Query psy6634
Match_columns 90
No_of_seqs 106 out of 806
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 23:11:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474|consensus 99.9 2.3E-22 4.9E-27 169.6 3.0 72 14-87 155-226 (762)
2 KOG0475|consensus 99.7 1.7E-19 3.8E-24 151.8 -0.7 62 14-75 147-208 (696)
3 cd01036 ClC_euk Chloride chann 99.7 2.3E-18 5E-23 136.7 4.5 66 14-79 54-119 (416)
4 cd03683 ClC_1_like ClC-1-like 99.7 4E-18 8.6E-23 135.9 5.0 70 14-85 62-131 (426)
5 KOG0476|consensus 99.7 1.9E-18 4.1E-23 148.1 2.7 61 14-74 157-217 (931)
6 cd03684 ClC_3_like ClC-3-like 99.7 6.2E-18 1.3E-22 135.6 4.4 66 14-79 45-110 (445)
7 cd03685 ClC_6_like ClC-6-like 99.6 1.6E-16 3.5E-21 128.2 4.8 64 15-78 96-159 (466)
8 cd01034 EriC_like ClC chloride 99.6 1.4E-15 3E-20 119.5 4.6 63 16-78 45-110 (390)
9 PF00654 Voltage_CLC: Voltage 99.5 1.8E-14 4E-19 111.8 1.9 66 15-84 10-75 (355)
10 PRK05277 chloride channel prot 99.4 3.1E-13 6.7E-18 107.7 4.8 62 15-78 62-123 (438)
11 COG0038 EriC Chloride channel 99.4 2.6E-13 5.5E-18 109.4 3.7 64 14-79 81-144 (443)
12 cd01031 EriC ClC chloride chan 99.3 9.7E-13 2.1E-17 103.5 4.9 60 16-77 56-115 (402)
13 cd01033 ClC_like Putative ClC 99.1 1.2E-10 2.5E-15 92.1 4.2 53 22-77 62-114 (388)
14 cd00400 Voltage_gated_ClC CLC 99.0 3.1E-10 6.8E-15 88.5 4.5 54 20-75 59-112 (383)
15 PRK01610 putative voltage-gate 98.9 2.5E-09 5.5E-14 85.6 5.2 54 21-77 76-129 (418)
16 PRK01862 putative voltage-gate 98.8 1.1E-08 2.4E-13 83.9 5.4 53 24-79 97-149 (574)
17 cd03682 ClC_sycA_like ClC sycA 98.8 9.6E-09 2.1E-13 80.8 4.7 59 17-78 50-108 (378)
18 PRK03655 putative ion channel 98.6 3.2E-08 6.9E-13 79.6 3.6 60 17-82 75-134 (414)
19 cd01034 EriC_like ClC chloride 97.4 0.00029 6.2E-09 55.7 5.3 52 20-74 262-313 (390)
20 cd00400 Voltage_gated_ClC CLC 97.3 8.9E-05 1.9E-09 58.0 1.3 64 17-83 257-320 (383)
21 cd01033 ClC_like Putative ClC 97.2 0.00016 3.6E-09 57.3 1.5 63 17-82 255-317 (388)
22 PRK05277 chloride channel prot 97.1 0.00029 6.3E-09 56.4 2.3 58 17-75 272-329 (438)
23 PRK01862 putative voltage-gate 96.4 0.0015 3.3E-08 53.9 1.8 56 18-74 291-346 (574)
24 PRK01610 putative voltage-gate 95.2 0.017 3.8E-07 46.5 3.0 56 18-74 273-328 (418)
25 cd03682 ClC_sycA_like ClC sycA 94.0 0.076 1.6E-06 42.0 3.9 56 20-82 256-312 (378)
26 cd01031 EriC ClC chloride chan 89.7 0.22 4.8E-06 39.4 2.0 62 18-82 260-321 (402)
27 PRK03655 putative ion channel 84.5 1.7 3.7E-05 35.2 4.4 62 19-82 276-337 (414)
28 PF00654 Voltage_CLC: Voltage 79.7 0.7 1.5E-05 36.1 0.5 64 17-82 218-285 (355)
29 COG0038 EriC Chloride channel 71.4 3.4 7.4E-05 33.7 2.4 62 17-82 286-348 (443)
30 cd03684 ClC_3_like ClC-3-like 50.0 19 0.00042 29.3 3.2 64 17-82 260-343 (445)
31 PF11382 DUF3186: Protein of u 44.3 12 0.00026 29.3 1.1 26 42-67 1-26 (308)
32 PF13721 SecD-TM1: SecD export 38.2 34 0.00073 22.7 2.4 37 40-76 2-38 (101)
33 COG2991 Uncharacterized protei 31.0 22 0.00048 23.3 0.6 33 54-86 9-43 (77)
34 cd03683 ClC_1_like ClC-1-like 25.5 64 0.0014 26.1 2.5 34 46-81 297-330 (426)
35 PF00175 NAD_binding_1: Oxidor 23.0 35 0.00076 21.0 0.5 14 22-35 3-16 (109)
36 PF13368 Toprim_C_rpt: Topoiso 22.9 31 0.00067 20.7 0.2 11 64-74 10-20 (61)
37 cd01036 ClC_euk Chloride chann 22.6 78 0.0017 25.4 2.5 33 47-81 299-331 (416)
38 cd03685 ClC_6_like ClC-6-like 20.7 89 0.0019 25.6 2.5 33 48-82 340-372 (466)
No 1
>KOG0474|consensus
Probab=99.85 E-value=2.3e-22 Score=169.56 Aligned_cols=72 Identities=31% Similarity=0.516 Sum_probs=66.7
Q ss_pred eeEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhhccccc
Q psy6634 14 IGGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNFGIVSS 87 (90)
Q Consensus 14 ~~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~g~~~~ 87 (90)
++.+++|.|+||||||+|++|||+++|+.+++||+++|++|.++++++||.+||||||||. |+.+|+||++.
T Consensus 155 lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHs--Ga~Vaagl~QG 226 (762)
T KOG0474|consen 155 LVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHS--GSVVAAGLGQG 226 (762)
T ss_pred HHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeeh--hHHHHhcccCC
Confidence 4678999999999999999999999999999999999999999999999999999999995 77777777654
No 2
>KOG0475|consensus
Probab=99.74 E-value=1.7e-19 Score=151.80 Aligned_cols=62 Identities=42% Similarity=0.556 Sum_probs=59.8
Q ss_pred eeEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhh
Q psy6634 14 IGGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGH 75 (90)
Q Consensus 14 ~~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~ 75 (90)
+++.++|+|+||||||+|+++.|+.+..|++.+|++.|.+++++++++||++|||||+||++
T Consensus 147 lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA 208 (696)
T KOG0475|consen 147 LVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIA 208 (696)
T ss_pred HhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeee
Confidence 46779999999999999999999999999999999999999999999999999999999996
No 3
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.73 E-value=2.3e-18 Score=136.74 Aligned_cols=66 Identities=41% Similarity=0.446 Sum_probs=60.3
Q ss_pred eeEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhh
Q psy6634 14 IGGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPI 79 (90)
Q Consensus 14 ~~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~ 79 (90)
++.+++|.++||||||+|+++||.+.++++++|++++|+++.++++++|+++|||||+||++++..
T Consensus 54 l~~~~~p~a~GsGIp~v~~~l~g~~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig 119 (416)
T cd01036 54 ICLYFAPQAAGSGIPEVMAYLNGVHLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIG 119 (416)
T ss_pred HHHhcCcccCCCCHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHH
Confidence 356789999999999999999998899999999999999999999999999999999999844433
No 4
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.72 E-value=4e-18 Score=135.91 Aligned_cols=70 Identities=59% Similarity=0.741 Sum_probs=62.8
Q ss_pred eeEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhhccc
Q psy6634 14 IGGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNFGIV 85 (90)
Q Consensus 14 ~~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~g~~ 85 (90)
++++++|.++||||||+|++++|...++++++|+++.|+++.++++++|+++|||||+||+ |++++..+.
T Consensus 62 l~~~~~p~a~GsGIp~v~~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~i--Ga~i~~~~~ 131 (426)
T cd03683 62 FCKYISPQAVGSGIPEMKTILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHI--SSIVAALLS 131 (426)
T ss_pred HHHhcCCccCCCCHHHHHHHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHH--HHHHHHHHH
Confidence 3567899999999999999999988899999999999999999999999999999999998 555554443
No 5
>KOG0476|consensus
Probab=99.72 E-value=1.9e-18 Score=148.12 Aligned_cols=61 Identities=66% Similarity=0.837 Sum_probs=58.7
Q ss_pred eeEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhh
Q psy6634 14 IGGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSG 74 (90)
Q Consensus 14 ~~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi 74 (90)
++..++|.|.||||||||.+|.|+..+.||++|||++|.+|+.+++++||++|||||+|||
T Consensus 157 f~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHi 217 (931)
T KOG0476|consen 157 FCHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHI 217 (931)
T ss_pred HHheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhH
Confidence 3567899999999999999999999999999999999999999999999999999999998
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.71 E-value=6.2e-18 Score=135.57 Aligned_cols=66 Identities=39% Similarity=0.490 Sum_probs=60.4
Q ss_pred eeEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhh
Q psy6634 14 IGGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPI 79 (90)
Q Consensus 14 ~~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~ 79 (90)
++.+++|.++||||||+|++++|...++.+++|++++|+++.++++++|+++|||||+||++++..
T Consensus 45 l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia 110 (445)
T cd03684 45 LVKVVAPYAAGSGIPEIKTILSGFIIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVG 110 (445)
T ss_pred HHHhcCccccCCCHHHHHHHHcCccccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHH
Confidence 356889999999999999999998889999999999999999999999999999999999854443
No 7
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.64 E-value=1.6e-16 Score=128.20 Aligned_cols=64 Identities=34% Similarity=0.467 Sum_probs=58.9
Q ss_pred eEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhh
Q psy6634 15 GGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGP 78 (90)
Q Consensus 15 ~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~ 78 (90)
+.+++|.++||||||+|+++||...++++++|++++|+++.++++++|+++|||||++|++++.
T Consensus 96 ~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~i 159 (466)
T cd03685 96 VAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACI 159 (466)
T ss_pred HHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHH
Confidence 4568899999999999999999888999999999999999999999999999999999984443
No 8
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.58 E-value=1.4e-15 Score=119.53 Aligned_cols=63 Identities=29% Similarity=0.244 Sum_probs=56.2
Q ss_pred EEeeeCCcCCCHHHHHHHHhCc---ccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhh
Q psy6634 16 GSNQVYLSGSGIPEMKTILRGV---ALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGP 78 (90)
Q Consensus 16 ~~~~P~A~GSGIPevka~L~G~---~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~ 78 (90)
.+++|.++||||||+|+.+++. ++++++++|+++.|+++.++++++|+|+|||||+||++++.
T Consensus 45 ~~~~p~~~gsGi~~v~~~~~~~~~~~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i 110 (390)
T cd01034 45 RRFFPGAAGSGIPQVIAALELPSAAARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAV 110 (390)
T ss_pred HhhCCCCCCCCHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHH
Confidence 4589999999999999999853 36778999999999999999999999999999999984443
No 9
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.46 E-value=1.8e-14 Score=111.83 Aligned_cols=66 Identities=39% Similarity=0.502 Sum_probs=51.5
Q ss_pred eEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhhcc
Q psy6634 15 GGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNFGI 84 (90)
Q Consensus 15 ~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~g~ 84 (90)
..+++|.++||||||++..+++...+ +++|+++.|+++.++++++|+++|||||++|+ |++++..+
T Consensus 10 ~~~~~p~~~g~Gi~~v~~~~~~~~~~--~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~i--ga~i~~~~ 75 (355)
T PF00654_consen 10 WKKFAPEAAGSGIPEVKAALRGKSGR--LPFRTLPVKFVGSILSLGSGLSVGREGPSVQI--GAAIGSWL 75 (355)
T ss_dssp HHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHH--HHHHHHHH
T ss_pred HHHHCCccCCCCHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHHhcCCCCcCccHHHHH--HHHHHHHH
Confidence 45678999999999999999987644 89999999999999999999999999999997 44444443
No 10
>PRK05277 chloride channel protein; Provisional
Probab=99.39 E-value=3.1e-13 Score=107.68 Aligned_cols=62 Identities=32% Similarity=0.357 Sum_probs=53.3
Q ss_pred eEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhh
Q psy6634 15 GGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGP 78 (90)
Q Consensus 15 ~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~ 78 (90)
+++++|.++||||||++.++++.... ..+|+++.|+++.++++++|.++|||||++|++++.
T Consensus 62 ~~~~~p~~~GsGi~~i~~~l~~~~~~--~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~i 123 (438)
T PRK05277 62 VRRFAPEAGGSGIPEIEGALEGLRPV--RWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNI 123 (438)
T ss_pred HHhcCcccCCCCHHHHHHHHcCCCcc--chHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHH
Confidence 34688999999999999999976532 337899999999999999999999999999984443
No 11
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.38 E-value=2.6e-13 Score=109.37 Aligned_cols=64 Identities=30% Similarity=0.296 Sum_probs=56.7
Q ss_pred eeEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhh
Q psy6634 14 IGGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPI 79 (90)
Q Consensus 14 ~~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~ 79 (90)
+..+++|.++||||||++..+++. +..+++|+.++|+++.++++++|+++|||||+||++.+..
T Consensus 81 ~~~~~~p~~~g~Gi~~~i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g 144 (443)
T COG0038 81 LVYKFAPEARGSGIPQAIEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIG 144 (443)
T ss_pred HHHHhCccccCCChhHHHHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 356789999999999999999886 4668899999999999999999999999999999854443
No 12
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.34 E-value=9.7e-13 Score=103.54 Aligned_cols=60 Identities=33% Similarity=0.427 Sum_probs=53.6
Q ss_pred EEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhh
Q psy6634 16 GSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCG 77 (90)
Q Consensus 16 ~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g 77 (90)
.+++|.++|+||||++..++++. +.+.+|+++.|+++.++++++|.++|||||++|++++
T Consensus 56 ~~~~p~~~g~G~~~v~~~l~~~~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ 115 (402)
T cd01031 56 KKFAPEAKGSGIPQVEGVLAGLL--PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAA 115 (402)
T ss_pred HhcCCccCCCCHHHHHHHHcCCC--CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Confidence 45699999999999999999865 3567899999999999999999999999999998433
No 13
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.07 E-value=1.2e-10 Score=92.13 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=46.7
Q ss_pred CcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhh
Q psy6634 22 LSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCG 77 (90)
Q Consensus 22 A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g 77 (90)
..||||||+++.+++.. .+++|+.+.|++..++++++|.|+|||||+||++++
T Consensus 62 ~~g~gi~~v~~~~~~~~---~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~ 114 (388)
T cd01033 62 RKGKKLVSIKQAVRGKK---RMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGAL 114 (388)
T ss_pred ccCCCcccHHHHhcCCC---CCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHH
Confidence 46999999999998753 367888999999999999999999999999998443
No 14
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.01 E-value=3.1e-10 Score=88.45 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=47.9
Q ss_pred eCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhh
Q psy6634 20 VYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGH 75 (90)
Q Consensus 20 P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~ 75 (90)
|.+.|+|+||++..+++.. +.+++|+++.|+++.++++++|.++|||||++|++
T Consensus 59 ~~~~g~G~~~v~~~~~~~~--~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iG 112 (383)
T cd00400 59 GPARGHGIPEVIEAIALGG--GRLPLRVALVKFLASALTLGSGGSVGREGPIVQIG 112 (383)
T ss_pred CcccCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Confidence 3388999999999998643 35689999999999999999999999999999974
No 15
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.88 E-value=2.5e-09 Score=85.58 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=47.9
Q ss_pred CCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhh
Q psy6634 21 YLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCG 77 (90)
Q Consensus 21 ~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g 77 (90)
..+++|++|++..++. ++.+++|+.+.|+++.++++++|.|+|||||+||++++
T Consensus 76 ~~~~~g~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~ 129 (418)
T PRK01610 76 QQRPHAPTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAAL 129 (418)
T ss_pred cccCCCcHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHH
Confidence 4779999999999975 25588999999999999999999999999999998443
No 16
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.76 E-value=1.1e-08 Score=83.87 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhh
Q psy6634 24 GSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPI 79 (90)
Q Consensus 24 GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~ 79 (90)
++++|+++++.++. +.+.+|+.+.|+++.++++++|+++|||||+||++++..
T Consensus 97 ~g~~~~~~~~~~~~---~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~ 149 (574)
T PRK01862 97 GGKTDYMEAVALGD---GVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAA 149 (574)
T ss_pred CCcHHHHHHHHcCC---CCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHH
Confidence 67777777777554 235689999999999999999999999999999854443
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.75 E-value=9.6e-09 Score=80.78 Aligned_cols=59 Identities=17% Similarity=0.047 Sum_probs=48.3
Q ss_pred EeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhh
Q psy6634 17 SNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGP 78 (90)
Q Consensus 17 ~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~ 78 (90)
++.|. .++|+||++..+++.. +.+++|.++.|+++..+++++|.++|||||++|++++.
T Consensus 50 ~~~~~-~~~g~~~v~~~~~~~~--~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~ 108 (378)
T cd03682 50 KFGKN-SEKGNNLIIEEIHGPE--EGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSL 108 (378)
T ss_pred HhCcc-cCCChHHHHHHHHccC--CCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHH
Confidence 34333 5789999999997543 45678999999999999999999999999999974433
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=98.60 E-value=3.2e-08 Score=79.58 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=47.9
Q ss_pred EeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhh
Q psy6634 17 SNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNF 82 (90)
Q Consensus 17 ~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~ 82 (90)
++.|..+|+ +|+++....+ -++.+.+..|++..++++++|.|+|||||+||++++..+..
T Consensus 75 ~~~~~~~G~-~~~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~ 134 (414)
T PRK03655 75 RFSPGHAGP-DPATEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAI 134 (414)
T ss_pred HHcCCCCCC-hHHHHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 445766677 7888888543 24468899999999999999999999999999966666554
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=97.42 E-value=0.00029 Score=55.71 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=45.4
Q ss_pred eCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhh
Q psy6634 20 VYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSG 74 (90)
Q Consensus 20 P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi 74 (90)
|...|+|.++++..+++.. ...+..++.|++.+++++++|.+-|+|+|++++
T Consensus 262 ~~~~G~G~~~i~~~~~~~~---~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~i 313 (390)
T cd01034 262 GLTFGTGYLQARAALEGGG---GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAV 313 (390)
T ss_pred CccccCcHHHHHHHHhCCC---cccHHHHHHHHHHHHHHHHcCCCcceechHHHH
Confidence 4677999999999998754 234677899999999999999999999999997
No 20
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=97.31 E-value=8.9e-05 Score=57.97 Aligned_cols=64 Identities=27% Similarity=0.212 Sum_probs=50.7
Q ss_pred EeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhhc
Q psy6634 17 SNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNFG 83 (90)
Q Consensus 17 ~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~g 83 (90)
.+.|+..|+|.+++...+++... -..-+..++.|++.+.+++++|.+-|+|+|++.+ |++++.-
T Consensus 257 ~~~p~~~g~G~~~~~~~~~~~~~-~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~i--Ga~~G~~ 320 (383)
T cd00400 257 LFLPQVLGSGYGAILLALAGELS-LLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFI--GAALGAA 320 (383)
T ss_pred HHHHHHHcCcHHHHHHHHcCChh-HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHH--HHHHHHH
Confidence 35689999999999988876432 1223567899999999999999999999999997 4544443
No 21
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=97.17 E-value=0.00016 Score=57.32 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=51.3
Q ss_pred EeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhh
Q psy6634 17 SNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNF 82 (90)
Q Consensus 17 ~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~ 82 (90)
.+.|+..|+|-..++..+++.....++ +..++.|++.+.+++++|.+-|.|+|++.+ |++.+.
T Consensus 255 ~~~p~~~G~G~~~i~~~~~~~~~~~~l-l~~~~~K~~~t~lt~gsG~~GG~f~P~l~i--Ga~~G~ 317 (388)
T cd01033 255 IFFPQILGNGRALAQLAFSTTLTLSLL-LILLVLKIVATLLALRAGAYGGLLTPSLAL--GALLGA 317 (388)
T ss_pred HHHHHHhCCcHHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHccCCCccchHHHHHH--HHHHHH
Confidence 456889999999999999875433333 778899999999999999999999999997 444443
No 22
>PRK05277 chloride channel protein; Provisional
Probab=97.11 E-value=0.00029 Score=56.44 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=48.3
Q ss_pred EeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhh
Q psy6634 17 SNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGH 75 (90)
Q Consensus 17 ~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~ 75 (90)
.+.|...|+|.++++..+++.. +-..-+..++.|++.+.+++++|.+-|.|+|+++++
T Consensus 272 ~~~p~~~g~G~~~i~~~~~~~~-~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iG 329 (438)
T PRK05277 272 LLAPAAVGGGFNLIPIALAGNF-SIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALG 329 (438)
T ss_pred HHhhhhcCChHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4579999999999999998743 212224567999999999999999999999999973
No 23
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.44 E-value=0.0015 Score=53.85 Aligned_cols=56 Identities=29% Similarity=0.159 Sum_probs=46.2
Q ss_pred eeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhh
Q psy6634 18 NQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSG 74 (90)
Q Consensus 18 ~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi 74 (90)
+.|...|+|-..++..+++... -..-+..++.|++.+.+++++|.+-|.++|++.+
T Consensus 291 ~~p~~~g~G~~~i~~~~~~~~~-~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~i 346 (574)
T PRK01862 291 WVPEVWGNGYSVVNTILHAPWT-WQALVAVLVAKLIATAATAGSGAVGGVFTPTLFV 346 (574)
T ss_pred HHHHHhcCCHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHccCCCccchhhHHHH
Confidence 5688899999999999876432 1122456789999999999999999999999997
No 24
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=95.19 E-value=0.017 Score=46.49 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=44.6
Q ss_pred eeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhh
Q psy6634 18 NQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSG 74 (90)
Q Consensus 18 ~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi 74 (90)
+.|+..|+|-+.++..+++... -.+-+-.++.|++.+.+++++|.+-|.+.|++.+
T Consensus 273 ~~p~~~G~G~~~i~~~~~~~~~-~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~i 328 (418)
T PRK01610 273 FTPAVWGNGYSVVQSFLTAPPL-LMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFV 328 (418)
T ss_pred HhhHHhCCcHHHHHHHHcCChh-HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Confidence 4588889999999988876331 1111233689999999999999999999999997
No 25
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=93.99 E-value=0.076 Score=41.96 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=43.1
Q ss_pred eCCcCCCHHHHHH-HHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhh
Q psy6634 20 VYLSGSGIPEMKT-ILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNF 82 (90)
Q Consensus 20 P~A~GSGIPevka-~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~ 82 (90)
|...|.|..+++. ..++. .++..++.|++.+.+++++|.+-|.+.|++.+ |++.+.
T Consensus 256 ~~~~G~g~~~i~~~~~~~~-----~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~i--Ga~~G~ 312 (378)
T cd03682 256 RRYLGLGTPLIEDSFFGGT-----VYPYDWLLKLIFTVITLGAGFKGGEVTPLFFI--GATLGN 312 (378)
T ss_pred CccccCCHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHhcCCCCceechHHHH--HHHHHH
Confidence 3456888888887 43332 23566899999999999999999999999986 444443
No 26
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=89.70 E-value=0.22 Score=39.45 Aligned_cols=62 Identities=19% Similarity=0.129 Sum_probs=47.0
Q ss_pred eeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhh
Q psy6634 18 NQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNF 82 (90)
Q Consensus 18 ~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~ 82 (90)
+.|+..|+|-..++..+++.. +-..-+..++.|++.+.+++++|.+-|...|++.+ |++.+.
T Consensus 260 ~~p~~~g~G~~~i~~~~~~~~-~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~i--Ga~~G~ 321 (402)
T cd01031 260 LLPEALGGGHGLILSLAGGNF-SISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLAL--GALLGL 321 (402)
T ss_pred HHHHHhCCHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHHHH
Confidence 468888999888888877643 11122346789999999999999999999999997 444443
No 27
>PRK03655 putative ion channel protein; Provisional
Probab=84.47 E-value=1.7 Score=35.24 Aligned_cols=62 Identities=21% Similarity=0.143 Sum_probs=46.3
Q ss_pred eeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhh
Q psy6634 19 QVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNF 82 (90)
Q Consensus 19 ~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~ 82 (90)
.|..-|+|=.+++..+++....-..-.-.++.|++.+.++.++|.+=|.-.|+.-+ |+..+.
T Consensus 276 ~~~~~g~Gy~~i~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~i--GA~~G~ 337 (414)
T PRK03655 276 GPLTLFKGLDEMQQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFV--GVALGL 337 (414)
T ss_pred CCccccCCHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHH--HHHHHH
Confidence 36678999999999887633222211225689999999999999999999999976 444443
No 28
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=79.69 E-value=0.7 Score=36.09 Aligned_cols=64 Identities=23% Similarity=0.158 Sum_probs=46.8
Q ss_pred EeeeC--CcCCCHHHHHHHHhCcc--cccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhh
Q psy6634 17 SNQVY--LSGSGIPEMKTILRGVA--LKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNF 82 (90)
Q Consensus 17 ~~~P~--A~GSGIPevka~L~G~~--~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~ 82 (90)
.+.|+ .-|+|-.+++..+++.. ..-..-.-.++.|++.+.+++++|.+=|.-.|++-+ |++.+.
T Consensus 218 ~~~p~~~~~g~G~~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~i--Ga~~G~ 285 (355)
T PF00654_consen 218 FFFPEGSVLGSGYELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFI--GAALGR 285 (355)
T ss_dssp HSSGG-SGSSSSTTHHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHH--HHHHHH
T ss_pred HHHhhhcccCCcHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHH--HHHHHH
Confidence 35577 88999999999997741 122222445799999999999999999999999976 444443
No 29
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=71.43 E-value=3.4 Score=33.72 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=48.6
Q ss_pred EeeeCCcCCCHHHHHHHHhCccccccc-chhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhh
Q psy6634 17 SNQVYLSGSGIPEMKTILRGVALKEYL-TFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNF 82 (90)
Q Consensus 17 ~~~P~A~GSGIPevka~L~G~~~~~~l-~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~ 82 (90)
.+.|...|.|--.+...+++..- .. ..-.++.|++.+.+++++|.+=|.--|++-+ |++.+.
T Consensus 286 l~~P~~lg~G~~~~~~~~~~~~~--~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~i--Ga~lG~ 348 (443)
T COG0038 286 LLFPEVLGNGYGLIQLALAGEGG--LLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFI--GAALGL 348 (443)
T ss_pred HhchhhhCCCccHHHHHHccCcc--HHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHH--HHHHHH
Confidence 35688888888888888877542 22 4667899999999999999999999999976 444443
No 30
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=49.96 E-value=19 Score=29.25 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=44.7
Q ss_pred EeeeCCcCCCHHHHHHHHhCcc---------------c-cccc----chhhHHHHHHHHHHHHhcCCCCCCCCchhhhhh
Q psy6634 17 SNQVYLSGSGIPEMKTILRGVA---------------L-KEYL----TFNTLVAKIIGLTATLGSGLPLGKEPISVSGHC 76 (90)
Q Consensus 17 ~~~P~A~GSGIPevka~L~G~~---------------~-~~~l----~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~ 76 (90)
.+.|+..|+|=..++..+++.. . ..+. -+-.++.|++.+.++.++|.+-|---|+.-+
T Consensus 260 ~~~p~~~~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~i-- 337 (445)
T cd03684 260 FPNPYTRLDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAV-- 337 (445)
T ss_pred hChHHHccchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHH--
Confidence 3568888888777777765311 0 0011 1235689999999999999999999999976
Q ss_pred hhhhhh
Q psy6634 77 GPISNF 82 (90)
Q Consensus 77 g~~~~~ 82 (90)
|++.+.
T Consensus 338 GA~~G~ 343 (445)
T cd03684 338 GALFGR 343 (445)
T ss_pred HHHHhH
Confidence 444443
No 31
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=44.31 E-value=12 Score=29.28 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=23.3
Q ss_pred ccchhhHHHHHHHHHHHHhcCCCCCC
Q psy6634 42 YLTFNTLVAKIIGLTATLGSGLPLGK 67 (90)
Q Consensus 42 ~l~~~tlv~K~vg~il~v~sGLslGr 67 (90)
+++||..++-++++.|+++-|+-||-
T Consensus 1 MI~~RyhivSl~aVFlALavGI~lG~ 26 (308)
T PF11382_consen 1 MIDFRYHIVSLAAVFLALAVGIVLGS 26 (308)
T ss_pred CcChhhHHHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999988883
No 32
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=38.22 E-value=34 Score=22.70 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=28.9
Q ss_pred ccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhh
Q psy6634 40 KEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHC 76 (90)
Q Consensus 40 ~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~ 76 (90)
++|-.||.++.=++.+++.+.+=-++=.|-|.|||+.
T Consensus 2 N~yp~WKyllil~vl~~~~lyALPnlyge~pAvqIs~ 38 (101)
T PF13721_consen 2 NRYPLWKYLLILVVLLLGALYALPNLYGEDPAVQISA 38 (101)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhccCCCCcEEEec
Confidence 4566788887777777777777788889999999965
No 33
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.01 E-value=22 Score=23.27 Aligned_cols=33 Identities=30% Similarity=0.630 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCCCC--CCchhhhhhhhhhhhcccc
Q psy6634 54 GLTATLGSGLPLGK--EPISVSGHCGPISNFGIVS 86 (90)
Q Consensus 54 g~il~v~sGLslGr--EGP~Vhi~~g~~~~~g~~~ 86 (90)
+..+.+..|+++|- .=-.|+-|||...++||-+
T Consensus 9 g~Fllvi~gMsiG~I~krk~I~GSCGGi~alGi~K 43 (77)
T COG2991 9 GIFLLVIAGMSIGYIFKRKSIKGSCGGIAALGIEK 43 (77)
T ss_pred HHHHHHHHHHhHhhheeccccccccccHHhhccch
Confidence 33444445555551 1135677999999999864
No 34
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=25.47 E-value=64 Score=26.07 Aligned_cols=34 Identities=15% Similarity=0.027 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhh
Q psy6634 46 NTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISN 81 (90)
Q Consensus 46 ~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~ 81 (90)
-.++.|++.+.++.++|.+-|.--|+.-+ |++.+
T Consensus 297 ~~~~~K~~~t~~t~gsG~~GGif~Psl~i--Ga~~G 330 (426)
T cd03683 297 LFIVVKFVLTALAITLPVPAGIFMPVFVI--GAALG 330 (426)
T ss_pred HHHHHHHHHHHHHHhCCCChhhhHHHHHH--HHHHH
Confidence 34679999999999999999999999976 44444
No 35
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=23.05 E-value=35 Score=21.04 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=12.2
Q ss_pred CcCCCHHHHHHHHh
Q psy6634 22 LSGSGIPEMKTILR 35 (90)
Q Consensus 22 A~GSGIPevka~L~ 35 (90)
|+|+||..+.+++.
T Consensus 3 agGtGIaP~~s~l~ 16 (109)
T PF00175_consen 3 AGGTGIAPFLSMLR 16 (109)
T ss_dssp EEGGGGHHHHHHHH
T ss_pred ecceeHHHHHHHHH
Confidence 67999999999885
No 36
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=22.85 E-value=31 Score=20.75 Aligned_cols=11 Identities=18% Similarity=-0.064 Sum_probs=9.0
Q ss_pred CCCCCCchhhh
Q psy6634 64 PLGKEPISVSG 74 (90)
Q Consensus 64 slGrEGP~Vhi 74 (90)
-.||-||+|+-
T Consensus 10 ~~GRfGPYv~~ 20 (61)
T PF13368_consen 10 KNGRFGPYVKH 20 (61)
T ss_pred eECCCCceEEE
Confidence 46999999973
No 37
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=22.59 E-value=78 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhh
Q psy6634 47 TLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISN 81 (90)
Q Consensus 47 tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~ 81 (90)
.++.|++.+.++.++|.+-|.--|+.-+ |+..+
T Consensus 299 ~~~~K~~~t~~t~~sg~pGG~f~Psl~i--GA~~G 331 (416)
T cd01036 299 FLLIYFWMSALAFGIAVPGGTFIPSLVI--GAAIG 331 (416)
T ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHH--HHHHH
Confidence 4688999999999999999999999976 44443
No 38
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=20.72 E-value=89 Score=25.64 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhh
Q psy6634 48 LVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNF 82 (90)
Q Consensus 48 lv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~ 82 (90)
++.|++.+.+++++|.+-|---|+.-+ |++.+.
T Consensus 340 ~~~k~l~t~lt~gsG~~GGif~Psl~i--GA~~G~ 372 (466)
T cd03685 340 FVLYYFLACWTFGIAVPSGLFIPMILI--GAAYGR 372 (466)
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHH--HHHHHH
Confidence 478999999999999999999999976 444443
Done!