Query psy6634
Match_columns 90
No_of_seqs 106 out of 806
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 23:12:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 99.7 1.6E-18 5.5E-23 141.5 2.2 65 14-78 69-135 (632)
2 4ene_A CLC-EC1, H(+)/CL(-) exc 99.6 2.6E-16 8.8E-21 124.9 2.7 63 15-79 82-144 (446)
3 3nd0_A SLL0855 protein; CLC fa 99.6 5.5E-16 1.9E-20 124.0 2.7 63 15-79 93-155 (466)
4 1ots_A Voltage-gated CLC-type 99.5 1.1E-15 3.8E-20 121.6 2.7 66 15-84 97-162 (465)
5 3nd0_A SLL0855 protein; CLC fa 84.3 0.84 2.9E-05 36.2 3.7 56 18-74 300-355 (466)
6 1ots_A Voltage-gated CLC-type 80.6 0.98 3.4E-05 35.6 2.7 56 18-74 308-363 (465)
7 4ene_A CLC-EC1, H(+)/CL(-) exc 79.6 1 3.5E-05 35.3 2.5 57 18-75 293-349 (446)
8 3org_A CMCLC; transporter, tra 20.6 41 0.0014 27.2 1.7 29 46-74 323-351 (632)
9 3a1f_A Cytochrome B-245 heavy 16.4 40 0.0014 21.5 0.6 15 21-35 23-37 (186)
10 3lyu_A Putative hydrogenase; t 14.8 48 0.0016 21.3 0.7 16 20-35 23-38 (142)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.71 E-value=1.6e-18 Score=141.55 Aligned_cols=65 Identities=35% Similarity=0.544 Sum_probs=59.4
Q ss_pred eeEEeeeCCcCCCHHHHHHHHhCcc--cccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhh
Q psy6634 14 IGGSNQVYLSGSGIPEMKTILRGVA--LKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGP 78 (90)
Q Consensus 14 ~~~~~~P~A~GSGIPevka~L~G~~--~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~ 78 (90)
++.+++|.++||||||+|++++|.. +++++++|++++|+++.++++++|+++|||||+||++++.
T Consensus 69 l~~~~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~i 135 (632)
T 3org_A 69 WCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACII 135 (632)
T ss_dssp HHHHSCGGGCBCSHHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHH
T ss_pred HHHhcCCccCCCCHHHHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHH
Confidence 3567899999999999999999976 7889999999999999999999999999999999985444
No 2
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.59 E-value=2.6e-16 Score=124.86 Aligned_cols=63 Identities=29% Similarity=0.285 Sum_probs=55.4
Q ss_pred eEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhh
Q psy6634 15 GGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPI 79 (90)
Q Consensus 15 ~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~ 79 (90)
+++++|.++||||||+|+++++.. ++.++|+++.|+++.++++++|+|+|||||+||++++..
T Consensus 82 ~~~~~p~a~GsGip~v~~~l~~~~--~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig 144 (446)
T 4ene_A 82 VRKYAPEAGGSGIPEIEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 144 (446)
T ss_dssp HHHHCGGGSSCSHHHHHHHHHTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHH
T ss_pred HHHhCcccCCCCHHHHHHHHhCCC--ccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHH
Confidence 456799999999999999999753 566799999999999999999999999999999854443
No 3
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.57 E-value=5.5e-16 Score=123.98 Aligned_cols=63 Identities=25% Similarity=0.230 Sum_probs=55.5
Q ss_pred eEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhh
Q psy6634 15 GGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPI 79 (90)
Q Consensus 15 ~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~ 79 (90)
+++++|.++||||||+|+++++.. ++.++|+++.|+++.++++++|+|+|||||+||++++..
T Consensus 93 ~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig 155 (466)
T 3nd0_A 93 MKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIG 155 (466)
T ss_dssp HTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHH
T ss_pred HHHHCCCcCCCCHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHH
Confidence 457899999999999999999865 456789999999999999999999999999999854443
No 4
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.55 E-value=1.1e-15 Score=121.61 Aligned_cols=66 Identities=29% Similarity=0.309 Sum_probs=56.3
Q ss_pred eEEeeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhhhhhhhhhcc
Q psy6634 15 GGSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGHCGPISNFGI 84 (90)
Q Consensus 15 ~~~~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~~g~~~~~g~ 84 (90)
+++++|.++||||||+|+++++.. ++.++|+++.|+++.++++++|+++|||||+||+ |+.++..+
T Consensus 97 ~~~~~p~a~GsGip~v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqi--Ga~ig~~l 162 (465)
T 1ots_A 97 VRKYAPEAGGSGIPEIEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQI--GGNIGRMV 162 (465)
T ss_dssp HHHHCGGGSSCSHHHHHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHH--HHHHHHHH
T ss_pred HHHhCccccCCChHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHH--HHHHHHHH
Confidence 446799999999999999999864 4566999999999999999999999999999997 44444443
No 5
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=84.30 E-value=0.84 Score=36.21 Aligned_cols=56 Identities=11% Similarity=-0.051 Sum_probs=46.2
Q ss_pred eeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhh
Q psy6634 18 NQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSG 74 (90)
Q Consensus 18 ~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi 74 (90)
+.|..-|+|-..++..+++... -.+-+-.++.|++.+.+++++|.+=|.--|+.-+
T Consensus 300 ~~p~~~G~G~~~i~~~~~~~~~-~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~i 355 (466)
T 3nd0_A 300 FPLPLTDGGDNAVLWAFNSQSH-FSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGI 355 (466)
T ss_dssp SSSSCSSSSHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHcCCcc-HHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHH
Confidence 5688999999999999987431 1122456789999999999999999999999976
No 6
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=80.60 E-value=0.98 Score=35.58 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=45.6
Q ss_pred eeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhh
Q psy6634 18 NQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSG 74 (90)
Q Consensus 18 ~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi 74 (90)
+.|..-|+|-..++..+++.. .-..-+-.++.|++.+.+++++|.+=|.--|+.-+
T Consensus 308 ~~P~~lG~G~~~i~~~~~~~~-~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~i 363 (465)
T 1ots_A 308 VAPATSGGGFNLIPIATAGNF-SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLAL 363 (465)
T ss_dssp HCGGGSSCSTTHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHH
T ss_pred HhHhhcCChHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHH
Confidence 468889999999999998743 11123446789999999999999999999999976
No 7
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=79.56 E-value=1 Score=35.33 Aligned_cols=57 Identities=19% Similarity=0.095 Sum_probs=45.6
Q ss_pred eeeCCcCCCHHHHHHHHhCcccccccchhhHHHHHHHHHHHHhcCCCCCCCCchhhhh
Q psy6634 18 NQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKEPISVSGH 75 (90)
Q Consensus 18 ~~P~A~GSGIPevka~L~G~~~~~~l~~~tlv~K~vg~il~v~sGLslGrEGP~Vhi~ 75 (90)
+.|..-|+|-..++..+++.... ..-+-.++.|++.+.+++++|.+=|.--|+.-++
T Consensus 293 ~~p~~~G~G~~~i~~~~~~~~~~-~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iG 349 (446)
T 4ene_A 293 VAPATSGGGFNLIPIATAGNFSM-GMLVFIFVARVITTLLCFSSGAPGGIFAPMLALG 349 (446)
T ss_dssp HCGGGSSCCSTHHHHHHTTCSCH-HHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHH
T ss_pred HhHhhcCCcHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHH
Confidence 46888899999999988874311 1123467899999999999999999999999763
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=20.58 E-value=41 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCchhhh
Q psy6634 46 NTLVAKIIGLTATLGSGLPLGKEPISVSG 74 (90)
Q Consensus 46 ~tlv~K~vg~il~v~sGLslGrEGP~Vhi 74 (90)
-.++.|++.++++.++|.+-|---|+.-+
T Consensus 323 ~~~~~k~~~t~~s~g~g~pGGif~P~l~i 351 (632)
T 3org_A 323 LMPIIKFILVALSIGLPLPAGVFVPSFLI 351 (632)
T ss_dssp HHHHHHHHHHHHHTTSSSBCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 34789999999999999999999999976
No 9
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=16.40 E-value=40 Score=21.46 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.8
Q ss_pred CCcCCCHHHHHHHHh
Q psy6634 21 YLSGSGIPEMKTILR 35 (90)
Q Consensus 21 ~A~GSGIPevka~L~ 35 (90)
-|+|+||..+.+++.
T Consensus 23 IagG~GItP~~s~l~ 37 (186)
T 3a1f_A 23 VGAGIGVTPFASILK 37 (186)
T ss_dssp EEEGGGHHHHHHHHH
T ss_pred EecCccHHHHHHHHH
Confidence 588999999988874
No 10
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=14.75 E-value=48 Score=21.31 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.3
Q ss_pred eCCcCCCHHHHHHHHh
Q psy6634 20 VYLSGSGIPEMKTILR 35 (90)
Q Consensus 20 P~A~GSGIPevka~L~ 35 (90)
=-|+|+||..+.+++.
T Consensus 23 lIaGG~GiaPl~sm~~ 38 (142)
T 3lyu_A 23 AIGAYTGIVEVYPIAK 38 (142)
T ss_dssp EEEETTHHHHHHHHHH
T ss_pred EEECcCcHHHHHHHHH
Confidence 3689999999988774
Done!