RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6634
         (90 letters)



>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
           merolae}
          Length = 632

 Score = 62.5 bits (152), Expect = 2e-13
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 23  SGSGIPEMKTILRGVA--LKEYLTFNTLVAKIIGLTATLGSGLPLGKE 68
            GSG+P+MK+IL G    ++  L    L AK +GL   +G GLP+G E
Sbjct: 78  EGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWE 125


>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
           FAB complex, membrane protein; 2.51A {Escherichia coli}
           SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
           2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
           2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
          Length = 465

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 23  SGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKE 68
            GSGIPE++  L     +    +  L  K  G   TLG G+ LG+E
Sbjct: 105 GGSGIPEIEGALED--QRPVRWWRVLPVKFFGGLGTLGGGMVLGRE 148


>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
           transport protein; 3.20A {Synechocystis} PDB: 3q17_A
          Length = 466

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 23  SGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKE 68
           SGSGIP+++  L G      +    L  K++G   +LG+G+  G E
Sbjct: 101 SGSGIPQIEGHLEG--KLPLVWQRVLPIKLVGGFLSLGAGMLAGFE 144


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.005
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 22/75 (29%)

Query: 16  GSNQVYLSGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTA-TLGSGLPLGKEPISVSG 74
           G+   Y       E++ +        Y T++ LV  +I  +A TL     L +  +    
Sbjct: 164 GNTDDYF-----EELRDL--------YQTYHVLVGDLIKFSAETL---SELIRTTLDAEK 207

Query: 75  HCGPISNFGI-VSSW 88
                   G+ +  W
Sbjct: 208 VFTQ----GLNILEW 218


>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown
           function, B-subunit binding, isomerase,
           nucleotide-binding, topoisomerase; HET: DNA; 1.95A
           {Myxococcus xanthus}
          Length = 369

 Score = 24.4 bits (54), Expect = 6.5
 Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 3/31 (9%)

Query: 26  GIPEMKTILRGV---ALKEYLTFNTLVAKII 53
            IP ++  +R        E L  + +   ++
Sbjct: 324 AIPGLEEAIRKQLQPLFIELLREHPVTPALL 354


>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
           hydrolase, nucleotide- binding; 2.00A {Pyrococcus
           furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
          Length = 720

 Score = 24.0 bits (52), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 35  RGVALKEYLTFNTLVAKIIGLTATLG 60
           RG  L+  L      A+IIGL+AT+G
Sbjct: 155 RGATLEVILAHMLGKAQIIGLSATIG 180


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,389,638
Number of extensions: 74075
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 10
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)