RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6634
         (90 letters)



>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 33.6 bits (76), Expect = 0.001
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 23  SGSGIPEMKTILRGVALKEYLTFNTLVAKIIGLTATLGSGLPLGKE 68
            GSGIPE++  L     +    +  L  K  G   TLG G+ LG+E
Sbjct: 89  GGSGIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGRE 132


>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
          {Bacteriophage T4 [TaxId: 10665]}
          Length = 241

 Score = 24.1 bits (51), Expect = 2.9
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 51 KIIGLTATLGSG 62
          K+I L+    SG
Sbjct: 2  KLIFLSGVKRSG 13


>d1snba_ g.3.7.1 (A:) Scorpion toxin {Scorpion (Buthus martensii),
          toxin m8 [TaxId: 34649]}
          Length = 64

 Score = 22.4 bits (48), Expect = 6.5
 Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 1/16 (6%)

Query: 62 GLPLGKEPISVSGHCG 77
           LP   E I   G CG
Sbjct: 50 DLP-ASERIKEGGRCG 64


>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase,
          C-terminal domain {Arthrobacter globiformis [TaxId:
          1665]}
          Length = 88

 Score = 22.1 bits (47), Expect = 8.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 51 KIIGLTATLGSGLPLGKEPISVSG 74
          ++  LT   G  + LGKEP+    
Sbjct: 3  RLRCLTIDDGRSIVLGKEPVFYKE 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0663    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 334,466
Number of extensions: 12526
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 4
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)