BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6637
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D4Z|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The
Chloride Channel Clc-0
pdb|2D4Z|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The
Chloride Channel Clc-0
Length = 250
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 54/71 (76%)
Query: 1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
++ E+ +WE+ E V+FE C ID +PFQLVE TSL K H++FSL+G++ AYVT++G+
Sbjct: 171 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK 230
Query: 61 LVGVVGLKEVR 71
LVGVV L E++
Sbjct: 231 LVGVVALAEIQ 241
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEV 70
+D +PF + + T + V IF +G+ VT GRL+G++ K+V
Sbjct: 114 LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 159
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 26 DPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEV 70
D +P + + + ++H +F ++ + YVT G+LVG+V ++V
Sbjct: 575 DVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDV 619
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 32 LVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLG 91
L++ L +HS +N + + G K V D HL + V+++ DG
Sbjct: 233 LIDEKGLRDIHSAGYFSAINQGVQSVMASFNSWNG-KRVHGDKHLLTDVLKNQLGFDGFV 291
Query: 92 EGQWNAQE 99
WNA +
Sbjct: 292 VSDWNAHK 299
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 32 LVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLG 91
L++ L +HS +N + + G K V D HL + V+++ DG
Sbjct: 233 LIDEKGLRDIHSAGYFSAINQGVQSVMASFNSWNG-KRVHGDKHLLTDVLKNQLGFDGFV 291
Query: 92 EGQWNAQE 99
WNA +
Sbjct: 292 VSDWNAHK 299
>pdb|4EP5|A Chain A, Thermus Thermophilus Ruvc Structure
Length = 166
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQL---VERTSLLKVHSIFSLVGVNHAYVTAIGR 60
E+Q + + E+ KV + + A F+ V ++V +L G HA +
Sbjct: 70 EEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQ--ALAGHGHAAKEEVAL 127
Query: 61 LV-GVVGLKEVRNDSHLSSVVIRSITMA 87
+V G++GLKE SHL++ + ++T A
Sbjct: 128 MVRGILGLKEAPRPSHLANALAIALTHA 155
>pdb|4EP4|A Chain A, Thermus Thermophilus Ruvc Structure
pdb|4EP4|B Chain B, Thermus Thermophilus Ruvc Structure
Length = 166
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQL---VERTSLLKVHSIFSLVGVNHAYVTAIGR 60
E+Q + + E+ KV + + A F+ V ++V +L G HA +
Sbjct: 70 EEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQ--ALAGHGHAAKEEVAL 127
Query: 61 LV-GVVGLKEVRNDSHLSSVVIRSITMA 87
+V G++GLKE SHL+ + ++T A
Sbjct: 128 MVRGILGLKEAPRPSHLADALAIALTHA 155
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 179 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 236
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 237 KVGEEVEIVGIKETQKST 254
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 171 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 228
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 229 KVGEEVEIVGIKETQKST 246
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 179 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 236
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 237 KVGEEVEIVGIKETQKST 254
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 180 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 237
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 238 KVGEEVEIVGIKETQKST 255
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 165 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 222
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 223 KVGEEVEIVGIKETQKST 240
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 121 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 179 KVGEEVEIVGIKETQKST 196
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 179 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 236
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 237 KVGEEVEIVGIKETQKST 254
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 180 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 237
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 238 KVGEEVEIVGIKETQKST 255
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAY-------VT 56
E +WE + + + F +I P P + +++ LL + +FS+ G +
Sbjct: 121 EGDAEWEAKIL-ELAGFLDSYI-PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 57 AIGRLVGVVGLKEVRNDS 74
+G V +VG+KE + +
Sbjct: 179 KVGEEVEIVGIKETQKST 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,078,692
Number of Sequences: 62578
Number of extensions: 100494
Number of successful extensions: 236
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 20
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)