Query psy6637
Match_columns 105
No_of_seqs 104 out of 202
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 23:20:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0476|consensus 99.9 2.6E-25 5.7E-30 195.2 6.4 77 1-77 784-860 (931)
2 KOG0474|consensus 99.2 1.4E-11 3.1E-16 107.8 5.9 64 8-72 680-744 (762)
3 PF00571 CBS: CBS domain CBS d 99.1 7.5E-10 1.6E-14 66.0 7.0 51 25-75 5-56 (57)
4 KOG0475|consensus 98.9 2E-09 4.3E-14 94.2 6.1 60 14-74 635-694 (696)
5 cd04591 CBS_pair_EriC_assoc_eu 98.7 7.9E-08 1.7E-12 63.4 6.2 49 25-73 57-105 (105)
6 cd04613 CBS_pair_SpoIVFB_EriC_ 98.6 1.5E-07 3.3E-12 60.5 5.4 55 18-73 58-114 (114)
7 cd04586 CBS_pair_BON_assoc Thi 98.6 1.4E-07 3.1E-12 63.7 5.3 54 19-73 82-135 (135)
8 cd04623 CBS_pair_10 The CBS do 98.5 3.6E-07 7.8E-12 58.7 6.3 53 20-73 61-113 (113)
9 cd04595 CBS_pair_DHH_polyA_Pol 98.5 3.3E-07 7.2E-12 59.3 6.0 52 20-72 58-109 (110)
10 cd04636 CBS_pair_23 The CBS do 98.5 5.2E-07 1.1E-11 60.7 6.8 53 19-72 79-131 (132)
11 cd04600 CBS_pair_HPP_assoc Thi 98.5 2.6E-07 5.6E-12 60.8 5.1 55 18-73 69-124 (124)
12 cd04625 CBS_pair_12 The CBS do 98.5 5.2E-07 1.1E-11 58.3 6.3 49 25-73 64-112 (112)
13 cd04629 CBS_pair_16 The CBS do 98.5 3.7E-07 8E-12 59.0 5.6 49 25-73 66-114 (114)
14 cd04618 CBS_pair_5 The CBS dom 98.4 4.2E-07 9E-12 59.8 5.0 45 29-73 52-98 (98)
15 cd04800 CBS_pair_CAP-ED_DUF294 98.4 8.1E-07 1.8E-11 57.3 6.2 48 25-72 63-110 (111)
16 cd04630 CBS_pair_17 The CBS do 98.4 8.9E-07 1.9E-11 57.9 6.2 49 25-73 66-114 (114)
17 cd04599 CBS_pair_GGDEF_assoc2 98.4 1.1E-06 2.3E-11 56.1 6.3 47 25-71 57-103 (105)
18 cd04594 CBS_pair_EriC_assoc_ar 98.4 1.2E-06 2.5E-11 56.8 6.0 52 21-73 53-104 (104)
19 cd04633 CBS_pair_20 The CBS do 98.4 9.2E-07 2E-11 57.9 5.6 48 25-72 73-120 (121)
20 cd04631 CBS_pair_18 The CBS do 98.4 1.1E-06 2.4E-11 57.8 5.8 53 20-73 72-125 (125)
21 cd04622 CBS_pair_9 The CBS dom 98.4 1.1E-06 2.5E-11 56.6 5.8 53 20-73 60-113 (113)
22 cd04584 CBS_pair_ACT_assoc Thi 98.4 1.3E-06 2.8E-11 57.0 6.1 49 25-73 73-121 (121)
23 cd04603 CBS_pair_KefB_assoc Th 98.3 1.5E-06 3.2E-11 57.1 5.7 48 25-72 62-110 (111)
24 cd04619 CBS_pair_6 The CBS dom 98.3 1.5E-06 3.2E-11 57.1 5.7 48 25-72 65-113 (114)
25 cd04611 CBS_pair_PAS_GGDEF_DUF 98.3 1.6E-06 3.5E-11 55.6 5.7 51 21-72 59-110 (111)
26 cd04585 CBS_pair_ACT_assoc2 Th 98.3 1.7E-06 3.6E-11 56.1 5.8 53 20-73 69-122 (122)
27 cd04589 CBS_pair_CAP-ED_DUF294 98.3 2.4E-06 5.2E-11 55.3 6.3 49 25-73 63-111 (111)
28 cd04612 CBS_pair_SpoIVFB_EriC_ 98.3 1.8E-06 4E-11 55.4 5.7 48 25-72 62-110 (111)
29 cd04638 CBS_pair_25 The CBS do 98.3 2.6E-06 5.6E-11 54.9 6.2 49 25-73 58-106 (106)
30 cd04588 CBS_pair_CAP-ED_DUF294 98.3 2E-06 4.3E-11 55.5 5.7 52 20-72 57-109 (110)
31 smart00116 CBS Domain in cysta 98.3 2.8E-06 6E-11 46.1 5.5 46 29-74 2-48 (49)
32 cd04641 CBS_pair_28 The CBS do 98.3 2.2E-06 4.7E-11 56.6 5.9 45 28-72 74-119 (120)
33 cd04639 CBS_pair_26 The CBS do 98.3 2.1E-06 4.5E-11 55.4 5.6 52 20-72 58-110 (111)
34 cd04626 CBS_pair_13 The CBS do 98.3 2.3E-06 5E-11 55.4 5.8 48 25-72 63-110 (111)
35 cd04627 CBS_pair_14 The CBS do 98.3 2.5E-06 5.4E-11 56.6 6.0 48 25-72 74-122 (123)
36 cd04803 CBS_pair_15 The CBS do 98.3 1.7E-06 3.6E-11 56.7 5.1 54 18-72 67-121 (122)
37 PRK10892 D-arabinose 5-phospha 98.3 2.3E-06 5.1E-11 67.2 6.7 51 22-73 273-323 (326)
38 cd04614 CBS_pair_1 The CBS dom 98.3 2.2E-06 4.9E-11 55.7 5.6 45 29-73 51-96 (96)
39 cd04618 CBS_pair_5 The CBS dom 98.3 2.9E-06 6.2E-11 55.7 6.1 47 29-75 3-51 (98)
40 cd04607 CBS_pair_NTP_transfera 98.3 2.1E-06 4.6E-11 55.9 5.3 50 21-71 61-111 (113)
41 cd04635 CBS_pair_22 The CBS do 98.3 2.7E-06 5.8E-11 55.8 5.8 49 25-73 73-122 (122)
42 cd04593 CBS_pair_EriC_assoc_ba 98.3 3.2E-06 6.9E-11 55.2 6.0 51 22-73 62-115 (115)
43 cd04596 CBS_pair_DRTGG_assoc T 98.3 3.2E-06 6.9E-11 54.7 5.8 53 20-73 55-108 (108)
44 cd04587 CBS_pair_CAP-ED_DUF294 98.3 2.2E-06 4.8E-11 55.3 5.0 49 25-73 64-113 (113)
45 cd04606 CBS_pair_Mg_transporte 98.2 3.8E-06 8.3E-11 54.5 6.1 53 21-74 56-109 (109)
46 cd04612 CBS_pair_SpoIVFB_EriC_ 98.2 4.9E-06 1.1E-10 53.4 6.3 50 27-76 1-50 (111)
47 cd04609 CBS_pair_PALP_assoc2 T 98.2 5.2E-06 1.1E-10 53.0 6.4 49 28-76 2-50 (110)
48 cd04624 CBS_pair_11 The CBS do 98.2 4.3E-06 9.3E-11 54.0 6.0 50 22-72 61-111 (112)
49 cd04801 CBS_pair_M50_like This 98.2 2.4E-06 5.1E-11 55.7 4.6 44 29-72 69-113 (114)
50 cd04620 CBS_pair_7 The CBS dom 98.2 4.8E-06 1E-10 54.1 6.0 49 25-73 64-115 (115)
51 cd04637 CBS_pair_24 The CBS do 98.2 7.5E-06 1.6E-10 53.8 6.8 48 28-75 2-49 (122)
52 cd04634 CBS_pair_21 The CBS do 98.2 4.4E-06 9.5E-11 57.6 5.8 48 25-72 95-142 (143)
53 cd04621 CBS_pair_8 The CBS dom 98.2 6.2E-06 1.3E-10 56.8 6.5 49 25-73 87-135 (135)
54 cd04642 CBS_pair_29 The CBS do 98.2 5.6E-06 1.2E-10 55.2 6.1 48 25-72 77-125 (126)
55 cd04597 CBS_pair_DRTGG_assoc2 98.2 5.9E-06 1.3E-10 55.5 6.2 52 20-72 60-112 (113)
56 COG2524 Predicted transcriptio 98.2 3.5E-06 7.6E-11 68.0 5.9 53 25-77 178-230 (294)
57 cd04585 CBS_pair_ACT_assoc2 Th 98.2 7.1E-06 1.5E-10 53.1 6.2 48 28-75 2-49 (122)
58 cd04610 CBS_pair_ParBc_assoc T 98.2 6.9E-06 1.5E-10 52.5 6.1 48 25-72 58-106 (107)
59 cd04802 CBS_pair_3 The CBS dom 98.2 7.7E-06 1.7E-10 52.8 6.3 51 21-72 61-111 (112)
60 cd04604 CBS_pair_KpsF_GutQ_ass 98.2 6.3E-06 1.4E-10 53.1 5.8 52 20-72 61-113 (114)
61 cd04588 CBS_pair_CAP-ED_DUF294 98.2 1.1E-05 2.3E-10 52.0 6.9 49 28-76 2-50 (110)
62 cd04632 CBS_pair_19 The CBS do 98.2 5.4E-06 1.2E-10 55.2 5.6 53 20-73 73-128 (128)
63 cd04583 CBS_pair_ABC_OpuCA_ass 98.2 6.9E-06 1.5E-10 52.5 5.9 52 20-72 56-108 (109)
64 cd04590 CBS_pair_CorC_HlyC_ass 98.2 5.8E-06 1.3E-10 53.3 5.5 46 27-72 64-110 (111)
65 cd04592 CBS_pair_EriC_assoc_eu 98.2 8.6E-06 1.9E-10 56.9 6.7 49 28-76 2-51 (133)
66 cd04593 CBS_pair_EriC_assoc_ba 98.2 8.9E-06 1.9E-10 53.0 6.4 49 27-75 1-50 (115)
67 cd04624 CBS_pair_11 The CBS do 98.1 1E-05 2.2E-10 52.2 6.4 48 28-75 2-50 (112)
68 cd04617 CBS_pair_4 The CBS dom 98.1 6.2E-06 1.3E-10 54.4 5.4 45 28-72 69-117 (118)
69 cd04601 CBS_pair_IMPDH This cd 98.1 9.1E-06 2E-10 52.0 5.9 48 25-72 60-109 (110)
70 cd04643 CBS_pair_30 The CBS do 98.1 9.3E-06 2E-10 52.6 6.0 48 29-76 3-51 (116)
71 cd04605 CBS_pair_MET2_assoc Th 98.1 1.1E-05 2.3E-10 52.0 6.3 52 20-72 57-109 (110)
72 cd04641 CBS_pair_28 The CBS do 98.1 1.1E-05 2.3E-10 53.3 6.4 47 29-75 3-50 (120)
73 PRK11543 gutQ D-arabinose 5-ph 98.1 7.3E-06 1.6E-10 64.0 6.4 51 22-73 267-318 (321)
74 cd04582 CBS_pair_ABC_OpuCA_ass 98.1 1.1E-05 2.4E-10 51.6 6.2 47 28-74 2-49 (106)
75 cd04617 CBS_pair_4 The CBS dom 98.1 1.1E-05 2.5E-10 53.2 6.3 47 29-75 3-50 (118)
76 COG2524 Predicted transcriptio 98.1 6E-06 1.3E-10 66.7 5.8 52 25-76 240-292 (294)
77 cd04608 CBS_pair_PALP_assoc Th 98.1 1.3E-05 2.9E-10 54.2 6.6 48 27-74 2-50 (124)
78 cd04599 CBS_pair_GGDEF_assoc2 98.1 1.4E-05 3.1E-10 50.8 6.3 47 28-74 2-48 (105)
79 cd04625 CBS_pair_12 The CBS do 98.1 1.8E-05 4E-10 51.0 6.8 48 28-75 2-49 (112)
80 cd04600 CBS_pair_HPP_assoc Thi 98.1 1.7E-05 3.7E-10 52.0 6.4 49 27-75 2-51 (124)
81 cd02205 CBS_pair The CBS domai 98.1 2E-05 4.4E-10 49.2 6.4 48 25-72 64-112 (113)
82 cd04633 CBS_pair_20 The CBS do 98.0 1.8E-05 4E-10 51.7 6.3 47 29-75 3-49 (121)
83 cd04637 CBS_pair_24 The CBS do 98.0 1.5E-05 3.3E-10 52.3 5.9 52 20-72 69-121 (122)
84 cd04605 CBS_pair_MET2_assoc Th 98.0 2.5E-05 5.5E-10 50.2 6.6 48 28-75 3-51 (110)
85 cd04602 CBS_pair_IMPDH_2 This 98.0 1.9E-05 4.1E-10 51.7 6.1 48 25-72 63-113 (114)
86 COG0517 FOG: CBS domain [Gener 98.0 3E-05 6.6E-10 50.1 7.0 51 27-77 7-57 (117)
87 cd04587 CBS_pair_CAP-ED_DUF294 98.0 2.9E-05 6.3E-10 50.0 6.8 46 28-73 2-47 (113)
88 cd04583 CBS_pair_ABC_OpuCA_ass 98.0 2.6E-05 5.6E-10 49.8 6.5 48 27-74 2-50 (109)
89 cd04589 CBS_pair_CAP-ED_DUF294 98.0 2.9E-05 6.3E-10 50.1 6.8 47 28-74 2-48 (111)
90 cd04614 CBS_pair_1 The CBS dom 98.0 2E-05 4.3E-10 51.2 5.9 47 28-74 2-49 (96)
91 cd04634 CBS_pair_21 The CBS do 98.0 1.9E-05 4.1E-10 54.4 6.1 49 27-75 1-49 (143)
92 cd04611 CBS_pair_PAS_GGDEF_DUF 98.0 2.8E-05 6.1E-10 49.8 6.5 47 29-75 3-49 (111)
93 cd04619 CBS_pair_6 The CBS dom 98.0 2.2E-05 4.7E-10 51.5 6.1 47 29-75 3-50 (114)
94 cd04627 CBS_pair_14 The CBS do 98.0 2E-05 4.4E-10 52.2 5.9 47 29-75 3-51 (123)
95 cd04603 CBS_pair_KefB_assoc Th 98.0 2.3E-05 5E-10 51.3 6.0 46 28-73 2-48 (111)
96 cd04623 CBS_pair_10 The CBS do 98.0 3.3E-05 7.1E-10 49.5 6.5 48 28-75 2-50 (113)
97 cd04613 CBS_pair_SpoIVFB_EriC_ 98.0 2.5E-05 5.5E-10 50.1 5.9 47 29-75 3-50 (114)
98 cd04615 CBS_pair_2 The CBS dom 98.0 2.8E-05 6E-10 50.2 6.0 48 25-72 64-112 (113)
99 cd04620 CBS_pair_7 The CBS dom 98.0 2.8E-05 6E-10 50.5 6.0 48 28-75 2-50 (115)
100 cd04800 CBS_pair_CAP-ED_DUF294 98.0 4.2E-05 9.2E-10 49.2 6.8 47 28-74 2-48 (111)
101 cd04630 CBS_pair_17 The CBS do 98.0 3.6E-05 7.9E-10 50.2 6.6 47 28-74 2-50 (114)
102 cd04631 CBS_pair_18 The CBS do 98.0 2.8E-05 6E-10 51.1 6.0 49 28-76 2-52 (125)
103 cd04582 CBS_pair_ABC_OpuCA_ass 98.0 2.9E-05 6.4E-10 49.6 5.9 51 21-72 54-105 (106)
104 cd04607 CBS_pair_NTP_transfera 98.0 3.5E-05 7.7E-10 50.0 6.4 49 27-75 2-51 (113)
105 cd04609 CBS_pair_PALP_assoc2 T 98.0 2.8E-05 6E-10 49.6 5.7 46 25-72 63-109 (110)
106 cd04594 CBS_pair_EriC_assoc_ar 98.0 5.7E-05 1.2E-09 48.8 7.2 45 30-74 4-48 (104)
107 cd04642 CBS_pair_29 The CBS do 97.9 2.4E-05 5.2E-10 52.2 5.4 48 28-75 2-50 (126)
108 cd04621 CBS_pair_8 The CBS dom 97.9 2.6E-05 5.6E-10 53.7 5.7 48 28-75 2-50 (135)
109 cd04598 CBS_pair_GGDEF_assoc T 97.9 3E-05 6.6E-10 50.5 5.7 53 19-72 62-118 (119)
110 cd04640 CBS_pair_27 The CBS do 97.9 3.7E-05 8.1E-10 51.4 6.2 45 28-72 2-47 (126)
111 cd04803 CBS_pair_15 The CBS do 97.9 3E-05 6.4E-10 50.7 5.6 48 28-75 2-50 (122)
112 cd04629 CBS_pair_16 The CBS do 97.9 3E-05 6.5E-10 50.0 5.5 48 28-75 2-50 (114)
113 cd04622 CBS_pair_9 The CBS dom 97.9 4.9E-05 1.1E-09 48.9 6.4 45 27-71 1-45 (113)
114 cd04643 CBS_pair_30 The CBS do 97.9 3.2E-05 7E-10 50.0 5.5 47 25-73 69-116 (116)
115 cd04639 CBS_pair_26 The CBS do 97.9 3.3E-05 7.2E-10 49.7 5.5 47 29-75 3-50 (111)
116 cd04802 CBS_pair_3 The CBS dom 97.9 6.9E-05 1.5E-09 48.3 6.9 47 28-74 2-48 (112)
117 cd04801 CBS_pair_M50_like This 97.9 4.2E-05 9.2E-10 49.7 5.9 47 29-75 3-51 (114)
118 cd04595 CBS_pair_DHH_polyA_Pol 97.9 6.4E-05 1.4E-09 48.4 6.7 48 28-75 3-50 (110)
119 cd04640 CBS_pair_27 The CBS do 97.9 2.7E-05 5.8E-10 52.1 5.0 39 34-72 85-125 (126)
120 cd04632 CBS_pair_19 The CBS do 97.9 5.2E-05 1.1E-09 50.4 6.3 46 29-74 3-49 (128)
121 cd04635 CBS_pair_22 The CBS do 97.9 3.6E-05 7.9E-10 50.3 5.5 46 28-73 2-48 (122)
122 cd04608 CBS_pair_PALP_assoc Th 97.9 1.1E-05 2.5E-10 54.5 3.1 55 19-74 60-124 (124)
123 PTZ00314 inosine-5'-monophosph 97.9 5.1E-05 1.1E-09 64.5 7.8 67 1-72 83-153 (495)
124 cd04586 CBS_pair_BON_assoc Thi 97.9 3.9E-05 8.5E-10 51.7 5.6 48 28-75 3-51 (135)
125 TIGR00400 mgtE Mg2+ transporte 97.9 3.8E-05 8.2E-10 63.9 6.5 55 22-77 199-254 (449)
126 PRK15094 magnesium/cobalt effl 97.9 2.8E-05 6.2E-10 61.7 5.5 50 28-77 141-191 (292)
127 cd04584 CBS_pair_ACT_assoc Thi 97.9 4.9E-05 1.1E-09 49.5 5.7 47 28-74 2-49 (121)
128 COG0517 FOG: CBS domain [Gener 97.8 7.1E-05 1.5E-09 48.3 6.3 46 25-70 68-116 (117)
129 cd02205 CBS_pair The CBS domai 97.8 8.1E-05 1.8E-09 46.4 6.4 49 28-76 2-51 (113)
130 cd04590 CBS_pair_CorC_HlyC_ass 97.8 7.8E-05 1.7E-09 48.0 6.4 48 29-76 3-52 (111)
131 TIGR01302 IMP_dehydrog inosine 97.8 8.1E-05 1.7E-09 62.2 8.0 64 10-74 72-139 (450)
132 cd04615 CBS_pair_2 The CBS dom 97.8 7.9E-05 1.7E-09 48.1 6.3 47 28-74 2-49 (113)
133 cd04602 CBS_pair_IMPDH_2 This 97.8 6.9E-05 1.5E-09 49.0 6.1 46 28-73 3-52 (114)
134 PRK01862 putative voltage-gate 97.8 4.8E-05 1E-09 64.6 6.6 55 20-75 514-571 (574)
135 cd04596 CBS_pair_DRTGG_assoc T 97.8 0.00011 2.4E-09 47.4 6.7 47 28-74 3-50 (108)
136 PRK07807 inosine 5-monophospha 97.8 6.4E-05 1.4E-09 63.9 6.9 56 21-77 151-207 (479)
137 PRK14869 putative manganese-de 97.8 3.7E-05 8.1E-10 64.7 5.4 61 14-75 242-304 (546)
138 cd04598 CBS_pair_GGDEF_assoc T 97.8 9.1E-05 2E-09 48.2 6.1 47 29-75 3-50 (119)
139 cd04636 CBS_pair_23 The CBS do 97.8 6.3E-05 1.4E-09 50.5 5.4 49 28-76 2-51 (132)
140 TIGR03520 GldE gliding motilit 97.8 6.7E-05 1.5E-09 62.0 6.2 58 18-77 255-313 (408)
141 PRK10892 D-arabinose 5-phospha 97.7 8.1E-05 1.8E-09 58.5 6.3 51 25-75 208-261 (326)
142 COG2905 Predicted signal-trans 97.7 5.6E-05 1.2E-09 66.1 5.9 53 25-77 220-272 (610)
143 PRK14869 putative manganese-de 97.7 8.6E-05 1.9E-09 62.6 6.8 56 21-77 71-127 (546)
144 TIGR01303 IMP_DH_rel_1 IMP deh 97.7 9.6E-05 2.1E-09 62.8 6.9 53 25-77 152-205 (475)
145 PRK07107 inosine 5-monophospha 97.7 8.5E-05 1.9E-09 63.5 6.4 47 28-74 172-219 (502)
146 PRK11543 gutQ D-arabinose 5-ph 97.7 0.0001 2.2E-09 57.6 6.3 54 21-75 200-256 (321)
147 cd04610 CBS_pair_ParBc_assoc T 97.7 0.00018 4E-09 45.8 6.4 47 27-73 2-48 (107)
148 cd04626 CBS_pair_13 The CBS do 97.7 0.00018 3.9E-09 46.4 6.2 47 29-75 3-50 (111)
149 PLN02274 inosine-5'-monophosph 97.6 0.0003 6.5E-09 60.1 8.6 68 1-73 87-158 (505)
150 COG3620 Predicted transcriptio 97.6 0.00014 3.1E-09 55.6 5.5 68 16-84 63-130 (187)
151 TIGR01303 IMP_DH_rel_1 IMP deh 97.6 0.00018 3.9E-09 61.1 6.7 55 17-72 87-141 (475)
152 TIGR01137 cysta_beta cystathio 97.6 0.00014 3.1E-09 59.5 5.8 56 19-75 336-392 (454)
153 PRK05567 inosine 5'-monophosph 97.6 0.00025 5.5E-09 59.8 7.1 62 11-73 80-142 (486)
154 cd04601 CBS_pair_IMPDH This cd 97.5 0.00025 5.4E-09 45.2 5.3 48 27-74 2-50 (110)
155 TIGR01302 IMP_dehydrog inosine 97.5 0.0002 4.4E-09 59.9 6.1 52 25-76 149-202 (450)
156 cd04604 CBS_pair_KpsF_GutQ_ass 97.5 0.0003 6.4E-09 45.2 5.2 47 30-76 5-52 (114)
157 TIGR00393 kpsF KpsF/GutQ famil 97.5 0.00025 5.5E-09 53.7 5.6 51 25-75 161-213 (268)
158 PRK07807 inosine 5-monophospha 97.5 0.00035 7.7E-09 59.4 6.9 56 16-72 87-143 (479)
159 cd04591 CBS_pair_EriC_assoc_eu 97.5 0.00032 6.9E-09 46.0 5.2 46 30-75 5-54 (105)
160 PLN02274 inosine-5'-monophosph 97.5 0.00037 8E-09 59.6 6.8 48 29-76 175-223 (505)
161 COG4109 Predicted transcriptio 97.4 0.00033 7.1E-09 59.1 5.9 57 20-77 251-308 (432)
162 COG3620 Predicted transcriptio 97.4 0.00033 7.2E-09 53.6 5.2 44 31-76 142-185 (187)
163 PRK01862 putative voltage-gate 97.4 0.00032 7E-09 59.6 5.3 56 18-74 447-503 (574)
164 COG3448 CBS-domain-containing 97.4 0.0004 8.7E-09 57.6 5.6 51 25-75 321-372 (382)
165 COG3448 CBS-domain-containing 97.3 0.00024 5.2E-09 58.9 4.2 53 25-77 251-304 (382)
166 PRK07107 inosine 5-monophospha 97.3 0.00045 9.7E-09 59.1 5.8 46 28-73 106-155 (502)
167 PRK05567 inosine 5'-monophosph 97.3 0.00061 1.3E-08 57.5 6.5 50 27-76 156-206 (486)
168 TIGR01137 cysta_beta cystathio 97.3 0.00076 1.7E-08 55.2 6.5 48 25-74 406-453 (454)
169 PTZ00314 inosine-5'-monophosph 97.2 0.0007 1.5E-08 57.7 5.8 48 28-75 170-218 (495)
170 cd04606 CBS_pair_Mg_transporte 97.2 0.00067 1.5E-08 43.8 4.5 42 32-73 2-49 (109)
171 cd04638 CBS_pair_25 The CBS do 97.2 0.0016 3.5E-08 41.6 6.1 45 29-73 3-48 (106)
172 TIGR00400 mgtE Mg2+ transporte 97.2 0.002 4.2E-08 53.8 7.8 50 25-74 137-192 (449)
173 COG1253 TlyC Hemolysins and re 97.1 0.0013 2.7E-08 54.6 6.2 50 28-77 280-330 (429)
174 PRK11573 hypothetical protein; 97.1 0.0014 3E-08 54.5 6.2 50 28-77 263-313 (413)
175 PRK15094 magnesium/cobalt effl 97.0 0.004 8.7E-08 49.5 7.8 63 12-74 56-126 (292)
176 TIGR01186 proV glycine betaine 97.0 0.0021 4.5E-08 52.8 6.0 52 25-77 308-360 (363)
177 COG2905 Predicted signal-trans 96.9 0.0012 2.6E-08 58.0 4.7 51 25-75 155-206 (610)
178 KOG1764|consensus 96.9 0.0023 4.9E-08 53.1 6.0 49 29-77 312-361 (381)
179 TIGR00393 kpsF KpsF/GutQ famil 96.9 0.0018 3.9E-08 49.1 4.8 44 22-66 224-268 (268)
180 COG2239 MgtE Mg/Co/Ni transpor 96.7 0.003 6.5E-08 53.8 5.1 53 25-77 202-255 (451)
181 PRK10070 glycine betaine trans 96.5 0.0074 1.6E-07 50.2 5.9 57 19-77 338-395 (400)
182 TIGR03520 GldE gliding motilit 96.3 0.013 2.9E-07 48.5 6.5 64 12-75 180-251 (408)
183 COG4536 CorB Putative Mg2+ and 96.0 0.018 3.9E-07 48.9 5.9 76 15-96 265-341 (423)
184 COG2239 MgtE Mg/Co/Ni transpor 95.8 0.034 7.4E-07 47.4 6.9 53 20-72 133-191 (451)
185 TIGR03415 ABC_choXWV_ATP choli 95.7 0.023 4.9E-07 47.1 5.4 50 25-75 331-380 (382)
186 KOG2550|consensus 94.9 0.017 3.6E-07 49.8 2.1 47 27-73 116-166 (503)
187 COG4175 ProV ABC-type proline/ 93.4 0.16 3.4E-06 42.9 4.9 53 24-76 332-384 (386)
188 cd04592 CBS_pair_EriC_assoc_eu 91.8 0.22 4.7E-06 34.5 3.3 32 27-58 86-117 (133)
189 KOG1764|consensus 91.6 0.32 7E-06 40.4 4.6 50 28-77 238-288 (381)
190 PRK11573 hypothetical protein; 90.3 1 2.2E-05 37.6 6.4 64 11-74 175-246 (413)
191 COG4109 Predicted transcriptio 88.2 0.78 1.7E-05 39.2 4.3 48 27-74 198-246 (432)
192 COG1253 TlyC Hemolysins and re 86.8 2.3 5.1E-05 35.3 6.3 67 11-77 194-268 (429)
193 PRK10070 glycine betaine trans 86.7 1.9 4.2E-05 35.9 5.8 44 33-76 291-335 (400)
194 KOG2550|consensus 86.7 1.2 2.6E-05 38.6 4.6 50 25-74 177-227 (503)
195 TIGR01186 proV glycine betaine 85.7 3 6.5E-05 34.3 6.3 50 27-76 250-300 (363)
196 COG1125 OpuBA ABC-type proline 73.1 7.4 0.00016 32.2 4.7 38 36-73 270-308 (309)
197 COG2216 KdpB High-affinity K+ 65.1 10 0.00022 34.1 4.2 35 38-72 415-449 (681)
198 COG4535 CorC Putative Mg2+ and 63.6 19 0.00041 29.5 5.2 48 30-77 143-191 (293)
199 PF01590 GAF: GAF domain; Int 54.4 29 0.00062 22.7 4.1 31 39-69 95-128 (154)
200 cd00565 ThiS ThiaminS ubiquiti 42.6 42 0.00091 20.5 3.3 39 23-62 2-40 (65)
201 PF13185 GAF_2: GAF domain; PD 38.9 42 0.00092 21.7 3.0 44 26-69 76-122 (148)
202 PF01693 Cauli_VI: Caulimoviru 37.5 38 0.00082 19.5 2.3 27 54-80 3-30 (44)
203 PF14827 Cache_3: Sensory doma 35.8 38 0.00082 22.7 2.5 16 52-67 93-109 (116)
204 cd01896 DRG The developmentall 33.0 70 0.0015 24.2 3.8 39 35-77 135-173 (233)
205 KOG0475|consensus 32.2 75 0.0016 29.1 4.3 42 36-77 566-610 (696)
206 PF03849 Tfb2: Transcription f 31.4 27 0.00059 28.9 1.4 32 41-77 319-350 (366)
207 TIGR01497 kdpB K+-transporting 31.3 78 0.0017 28.6 4.3 34 39-72 415-448 (675)
208 PF12282 H_kinase_N: Signal tr 30.9 61 0.0013 23.3 3.0 19 49-67 105-123 (145)
209 PF14237 DUF4339: Domain of un 29.5 46 0.001 19.1 1.8 27 54-80 3-29 (45)
210 COG3519 Type VI protein secret 28.9 44 0.00095 30.2 2.3 40 38-77 484-523 (621)
211 PF00564 PB1: PB1 domain; Int 28.8 83 0.0018 19.5 3.0 50 30-79 16-71 (84)
212 PF09924 DUF2156: Uncharacteri 28.7 1.1E+02 0.0023 23.7 4.2 33 38-70 168-201 (299)
213 PF13420 Acetyltransf_4: Acety 28.3 1E+02 0.0023 20.5 3.7 34 38-71 34-72 (155)
214 PF14721 AIF_C: Apoptosis-indu 28.2 61 0.0013 23.9 2.6 22 47-68 97-118 (133)
215 TIGR00158 L9 ribosomal protein 28.1 57 0.0012 23.8 2.5 21 57-77 85-105 (148)
216 COG0561 Cof Predicted hydrolas 27.9 1.2E+02 0.0025 22.7 4.2 37 29-65 38-74 (264)
217 PF02743 Cache_1: Cache domain 27.6 89 0.0019 19.2 3.0 25 53-77 19-48 (81)
218 KOG0476|consensus 27.2 84 0.0018 29.6 3.8 57 20-77 590-649 (931)
219 CHL00160 rpl9 ribosomal protei 27.1 45 0.00097 24.6 1.7 19 57-75 91-109 (153)
220 TIGR02463 MPGP_rel mannosyl-3- 26.8 1.3E+02 0.0028 21.8 4.2 36 28-63 33-69 (221)
221 COG0731 Fe-S oxidoreductases [ 26.6 1.2E+02 0.0026 24.9 4.3 70 23-104 78-151 (296)
222 PF05504 Spore_GerAC: Spore ge 26.6 1E+02 0.0022 21.6 3.5 20 52-71 3-22 (171)
223 COG1956 GAF domain-containing 26.3 66 0.0014 24.4 2.5 16 52-67 118-133 (163)
224 PF03948 Ribosomal_L9_C: Ribos 26.1 1.1E+02 0.0024 20.2 3.4 21 57-77 24-44 (87)
225 PF05198 IF3_N: Translation in 25.9 88 0.0019 20.4 2.8 25 51-75 13-38 (76)
226 TIGR01683 thiS thiamine biosyn 25.9 1E+02 0.0022 18.7 3.0 38 24-62 2-39 (64)
227 PF13508 Acetyltransf_7: Acety 25.4 1E+02 0.0022 18.5 3.0 16 52-67 5-20 (79)
228 smart00065 GAF Domain present 25.3 90 0.002 18.8 2.7 16 53-68 97-112 (149)
229 PF09992 DUF2233: Predicted pe 25.2 1E+02 0.0022 21.8 3.3 33 34-66 114-146 (170)
230 cd08815 Death_TNFRSF25_DR3 Dea 25.2 82 0.0018 21.1 2.6 22 30-51 3-24 (77)
231 PRK00137 rplI 50S ribosomal pr 25.0 2.2E+02 0.0049 20.5 5.1 40 38-77 62-105 (147)
232 PRK05659 sulfur carrier protei 24.9 1.3E+02 0.0028 18.1 3.3 39 23-62 3-41 (66)
233 PRK01122 potassium-transportin 24.8 91 0.002 28.2 3.5 31 40-70 415-445 (679)
234 PRK06944 sulfur carrier protei 24.7 91 0.002 18.7 2.6 38 23-62 3-40 (65)
235 PHA02996 poly(A) polymerase la 24.6 11 0.00023 32.7 -2.1 36 34-69 72-107 (467)
236 PF02824 TGS: TGS domain; Int 24.2 1.5E+02 0.0032 18.0 3.5 38 27-64 8-46 (60)
237 PF11102 Cap_synth_GfcB: Group 23.9 73 0.0016 23.8 2.4 23 50-72 72-95 (200)
238 KOG3471|consensus 23.8 39 0.00085 29.5 1.0 32 41-77 328-359 (465)
239 PF14759 Reductase_C: Reductas 23.4 1E+02 0.0022 19.8 2.8 17 52-69 36-52 (85)
240 PF13673 Acetyltransf_10: Acet 22.8 2E+02 0.0044 17.9 4.3 33 36-68 30-62 (117)
241 PF10453 NUFIP1: Nuclear fragi 22.7 70 0.0015 20.0 1.8 15 2-16 19-33 (56)
242 PF08621 RPAP1_N: RPAP1-like, 22.7 61 0.0013 19.7 1.5 16 1-17 15-30 (49)
243 PF13365 Trypsin_2: Trypsin-li 22.2 69 0.0015 20.2 1.8 10 55-64 111-120 (120)
244 cd06397 PB1_UP1 Uncharacterize 21.8 1.4E+02 0.0031 20.3 3.3 40 40-79 28-69 (82)
245 TIGR01486 HAD-SF-IIB-MPGP mann 21.8 1.7E+02 0.0037 21.9 4.1 35 28-62 33-67 (256)
246 PF07449 HyaE: Hydrogenase-1 e 21.7 2.1E+02 0.0046 19.9 4.3 27 41-67 74-100 (107)
247 cd05152 MPH2' Macrolide 2'-Pho 21.3 88 0.0019 24.3 2.5 23 48-70 192-214 (276)
248 TIGR02200 GlrX_actino Glutared 21.0 1.9E+02 0.0041 16.9 4.2 27 49-75 48-76 (77)
249 KOG0119|consensus 20.9 86 0.0019 28.0 2.6 93 4-104 110-220 (554)
250 cd05992 PB1 The PB1 domain is 20.7 1.6E+02 0.0034 18.0 3.2 50 29-78 13-69 (81)
251 TIGR01487 SPP-like sucrose-pho 20.4 1.6E+02 0.0035 21.3 3.6 34 29-62 36-69 (215)
252 PF13405 EF-hand_6: EF-hand do 20.3 63 0.0014 16.7 1.1 13 63-75 15-27 (31)
No 1
>KOG0476|consensus
Probab=99.91 E-value=2.6e-25 Score=195.22 Aligned_cols=77 Identities=61% Similarity=1.014 Sum_probs=75.4
Q ss_pred CChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637 1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 1 ~~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~ 77 (105)
|++|||++||+++|.+++|++.|.|||+||||++.|||+|||+||++||++|+|||+.|||||||++|||+|||++-
T Consensus 784 ~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~~GrLvGVValkELRkAie~I 860 (931)
T KOG0476|consen 784 LSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTSCGRLVGVVALKELRKAIENI 860 (931)
T ss_pred cChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHHHHHHHhccchhhhcccCcEEEEEEHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999983
No 2
>KOG0474|consensus
Probab=99.22 E-value=1.4e-11 Score=107.81 Aligned_cols=64 Identities=28% Similarity=0.524 Sum_probs=59.5
Q ss_pred hHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 8 KWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 8 ~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
...++++++++|++++ +||+|++|.++||+.++..+|+.||+||++|+. ..+++|++|+||+.+
T Consensus 680 ~lt~~e~~~yvDl~p~-~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 680 HLTSEEMEMYVDLHPF-MNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLAR 744 (762)
T ss_pred hcchHhHhhccccccc-cCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhh
Confidence 4567899999999999 999999999999999999999999999999997 677799999999973
No 3
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.08 E-value=7.5e-10 Score=65.98 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=48.2
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEe-eCCeEEEEEehHHHHHhhc
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVT-AIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt-~~GrLVGvVT~kDL~kaI~ 75 (105)
+.+.++++.+++|+.+|...|...+.++++|+ ++|+++|+||.+||.+++.
T Consensus 5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 66789999999999999999999999999999 5999999999999999874
No 4
>KOG0475|consensus
Probab=98.91 E-value=2e-09 Score=94.24 Aligned_cols=60 Identities=22% Similarity=0.463 Sum_probs=56.6
Q ss_pred hcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637 14 MGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 14 l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI 74 (105)
....++++.. +|.+||+|..+||+..+.++|+.+|++++.|+++|+|.|+||+||++++.
T Consensus 635 ~~~~~~lk~i-l~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 635 IPSRLDLKDI-LDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCcCceee-ccCCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHhh
Confidence 4567899988 99999999999999999999999999999999999999999999998875
No 5
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.66 E-value=7.9e-08 Score=63.37 Aligned_cols=49 Identities=45% Similarity=0.769 Sum_probs=46.0
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
+.+.|+++.+++++.++..+|...++++++|+++|+++|+||++|+.++
T Consensus 57 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 57 IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLLKA 105 (105)
T ss_pred ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhhcC
Confidence 6677889999999999999999999999999999999999999999764
No 6
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.56 E-value=1.5e-07 Score=60.50 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=48.5
Q ss_pred ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHh
Q psy6637 18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRND 73 (105)
Q Consensus 18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~ka 73 (105)
.....+ +++.+.++.+++++..++..|...+.++++|++. |+++|+||.+|+.++
T Consensus 58 ~~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~~ 114 (114)
T cd04613 58 VVASDI-MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred EEHHHh-ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhcC
Confidence 344455 6788999999999999999999999999999986 999999999998763
No 7
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.56 E-value=1.4e-07 Score=63.72 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=48.3
Q ss_pred cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
++..+ +++.+..+.+++++.+|..+|...+.++++|++.|+++||||++|+.+|
T Consensus 82 ~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~~ 135 (135)
T cd04586 82 KVADV-MTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLRA 135 (135)
T ss_pred CHHHH-hCCCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhcC
Confidence 34445 5677999999999999999999999999999999999999999999865
No 8
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=3.6e-07 Score=58.70 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=47.0
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
+..+ +++.+..+.+++++..+..+|...+.++++|+++|+++|+||.+|+.++
T Consensus 61 ~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~~ 113 (113)
T cd04623 61 VSEI-MTRNVITVTPDDTVDEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVKA 113 (113)
T ss_pred HHHh-cCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhhcC
Confidence 4445 5677899999999999999999999999999988999999999999764
No 9
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.52 E-value=3.3e-07 Score=59.28 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=47.0
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
...+ +++.++.+.+++++..+..+|...+.++++|+++|+++|+||++|+.+
T Consensus 58 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~ 109 (110)
T cd04595 58 VKDY-MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHH-hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence 3345 667899999999999999999999999999999999999999999875
No 10
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.50 E-value=5.2e-07 Score=60.73 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=47.5
Q ss_pred cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
++..+ +++.|..+.+++++..+..+|...+.++++|++.|+++|+||++|+.+
T Consensus 79 ~v~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEI-MTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR 131 (132)
T ss_pred CHHHh-ccCCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence 44444 677899999999999999999999999999998899999999999875
No 11
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.49 E-value=2.6e-07 Score=60.78 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=49.0
Q ss_pred ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
..+..+ ++..+..+.+++++.++..+|...+.++++|++ .|+++|+||++|+.+|
T Consensus 69 ~~i~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 69 ETVGDI-MSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred ccHHHh-ccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 344555 677899999999999999999999999999998 8999999999999875
No 12
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=5.2e-07 Score=58.35 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=45.3
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
++..+..+.+++++..+..+|...+..+++|++.|+++|+||++||.++
T Consensus 64 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 64 MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVAKA 112 (112)
T ss_pred hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhcC
Confidence 5666889999999999999999999999999999999999999999764
No 13
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=3.7e-07 Score=59.05 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=45.5
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
+++.++.+.+++++.++..+|...+.++++|+++|+++|+||++|+.++
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~~ 114 (114)
T cd04629 66 MTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLRA 114 (114)
T ss_pred hccCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhcC
Confidence 5677889999999999999999999999999988999999999999764
No 14
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.44 E-value=4.2e-07 Score=59.77 Aligned_cols=45 Identities=9% Similarity=0.038 Sum_probs=42.1
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-C-CeEEEEEehHHHHHh
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-I-GRLVGVVGLKEVRND 73 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~-GrLVGvVT~kDL~ka 73 (105)
++++.+++++.+|..+|...++++++|++ + |+++|+||.+|+.++
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILKF 98 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhcC
Confidence 78999999999999999999999999998 4 899999999999764
No 15
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.43 E-value=8.1e-07 Score=57.35 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=45.1
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
++..+.++.+++++.++..+|...+..+++|++.|+++|+||++|+.+
T Consensus 63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~ 110 (111)
T cd04800 63 MTAPPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLLR 110 (111)
T ss_pred hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence 567889999999999999999999999999999899999999999875
No 16
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=8.9e-07 Score=57.88 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=45.1
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
++..+.++.+++++.+|..+|...+.++++|++.|+++|+||+.|+.+|
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVENNELIGIISLTDIFLA 114 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhcC
Confidence 5566889999999999999999999999999988999999999999865
No 17
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.41 E-value=1.1e-06 Score=56.10 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=44.9
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVR 71 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ 71 (105)
+++.+..+.+++++..+...|...+.++++|+++|+++|+||.+++.
T Consensus 57 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 57 MTREVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 67889999999999999999999999999999999999999999986
No 18
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.38 E-value=1.2e-06 Score=56.80 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=46.9
Q ss_pred CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
..+ +.+.++++.+++++..+..+|...+.+.++|+++|+++|+||..|+.++
T Consensus 53 ~~~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~~~ 104 (104)
T cd04594 53 VDY-IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSILDA 104 (104)
T ss_pred hhh-hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhhcC
Confidence 344 5677899999999999999999999999999999999999999998764
No 19
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=9.2e-07 Score=57.89 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=45.1
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
++..+..+.+++++.++..+|...+.++++|+++|+++|+||.+|+.+
T Consensus 73 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 73 MTRPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR 120 (121)
T ss_pred ccCCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence 567899999999999999999999999999998899999999999875
No 20
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=1.1e-06 Score=57.84 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=47.2
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHh
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRND 73 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~ka 73 (105)
+..+ +.+.+..+.+++++.++..+|...+.++++|++. |+++|+||++|+.++
T Consensus 72 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 72 VRSI-MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred HHHH-hcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 4445 5678999999999999999999999999999985 999999999998764
No 21
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.37 E-value=1.1e-06 Score=56.64 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=47.0
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHh
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRND 73 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~ka 73 (105)
...+ ++..+.++.+++++.++...|..-+..+++|++. |+++|+||++|+.++
T Consensus 60 ~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~~ 113 (113)
T cd04622 60 VGDV-MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113 (113)
T ss_pred HHHh-ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 3344 6778999999999999999999999999999975 999999999999764
No 22
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.37 E-value=1.3e-06 Score=57.04 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=45.6
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
+++.+..+.+++++.++..+|...+..+++|+++|+++|+||.+|+.++
T Consensus 73 ~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~~ 121 (121)
T cd04584 73 MTKDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLRT 121 (121)
T ss_pred hhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhcC
Confidence 5678899999999999999999999999999988999999999998764
No 23
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=1.5e-06 Score=57.07 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=43.8
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
+...+.++.+++++..|..+|...+.++++|++ .|+++|+||..|+.+
T Consensus 62 ~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 62 YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 456678899999999999999999999999998 599999999999876
No 24
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.33 E-value=1.5e-06 Score=57.12 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=44.7
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
++..+..+.+++++.++..+|...+.++++|++ +|+++|+||++|+.+
T Consensus 65 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 65 MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 677889999999999999999999999999998 589999999999865
No 25
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.33 E-value=1.6e-06 Score=55.63 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=45.3
Q ss_pred CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
..+ +++.++.+.+++++.++...|...+.++++|++. |+++|+||++|+.+
T Consensus 59 ~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 59 GEV-MSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHh-cCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 344 5678899999999999999999999999999975 99999999999865
No 26
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.33 E-value=1.7e-06 Score=56.10 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=46.8
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHh
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRND 73 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~ka 73 (105)
+..+ +.+.+.++.+++++.++...|...+..+++|++. |+++|+||++|+.++
T Consensus 69 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 69 VSDI-MTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred HHHh-ccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhhC
Confidence 3344 5678999999999999999999999999999985 999999999999763
No 27
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.32 E-value=2.4e-06 Score=55.29 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=45.3
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
+++.++.+.+++++.++..+|...+...++|+++|+++|+||..|+.++
T Consensus 63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~~ 111 (111)
T cd04589 63 ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLLSF 111 (111)
T ss_pred hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhhcC
Confidence 6677889999999999999999999999999999999999999998753
No 28
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.31 E-value=1.8e-06 Score=55.35 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=44.4
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
+.+.+..+.+++++.++...|...+.++++|++. |+++|+||.+|+.+
T Consensus 62 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 62 MTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred ccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 5677899999999999999999999999999985 99999999999875
No 29
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=2.6e-06 Score=54.87 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=45.1
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
++..+.++.+++++.++..+|...+.+.++|+++|+++|+||.+|+.++
T Consensus 58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~~~ 106 (106)
T cd04638 58 MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIVRA 106 (106)
T ss_pred hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhcC
Confidence 5677888999999999999999999999999999999999999998753
No 30
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.30 E-value=2e-06 Score=55.45 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
+..+ +...+.++.+++++.++...|...+.++++|++. |+++|+||++|+.+
T Consensus 57 v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 57 VKDV-MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHH-hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 3344 5678899999999999999999999999999985 99999999999865
No 31
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.30 E-value=2.8e-06 Score=46.14 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=41.7
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhh
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDS 74 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI 74 (105)
+..+.+++++..+...|...+.++++|++. |+++|+++.+++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 467888999999999999999999999985 8999999999998875
No 32
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=2.2e-06 Score=56.65 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=41.7
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
.+.++.+++++.++..+|...+.++++|++. |+++|+||+.|+.+
T Consensus 74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 4679999999999999999999999999984 89999999999875
No 33
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=2.1e-06 Score=55.41 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=46.2
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
...+ ++..+..+.+++++.++..+|...+.++++|++. |+++|+||++|+.+
T Consensus 58 v~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 58 VRGV-MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHH-hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 3444 5677889999999999999999999999999986 99999999999875
No 34
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=2.3e-06 Score=55.37 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=44.3
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
++..+..+.+++++..|...|...+...++|++.|+++|+||..|+.+
T Consensus 63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~ 110 (111)
T cd04626 63 VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDILD 110 (111)
T ss_pred hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence 567788999999999999999999999999998899999999999864
No 35
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=2.5e-06 Score=56.60 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=44.2
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
+...+..+.+++++.+|..+|...+.++++|++ +|+++|+||+.|++.
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 567788999999999999999999999999997 699999999999874
No 36
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.28 E-value=1.7e-06 Score=56.75 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=47.7
Q ss_pred ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
.++..+ ++..+..+.+++++..+..+|...+.++++|++. |+++|+||.+|+.+
T Consensus 67 ~~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 67 VPVAEV-MKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCHHHh-hCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 344555 6788899999999999999999999999999986 99999999999875
No 37
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.28 E-value=2.3e-06 Score=67.20 Aligned_cols=51 Identities=10% Similarity=0.215 Sum_probs=47.2
Q ss_pred ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
.+ +.+.|.++.+++++.+|..+|...++++++|++.|+++||||+.|+.++
T Consensus 273 ~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 273 DV-MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA 323 (326)
T ss_pred Hh-cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence 44 5678899999999999999999999999999999999999999999875
No 38
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=2.2e-06 Score=55.68 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=42.4
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHh
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRND 73 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~ka 73 (105)
+.++.+++++.++..+|...+.++++|.+. |+++|+||++|+.+|
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 888999999999999999999999999985 999999999999875
No 39
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=2.9e-06 Score=55.74 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=42.9
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~ 75 (105)
.+++.+++|+.+|..+|...++++++|++ +|+++|+||.+|+.+++.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~ 51 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR 51 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee
Confidence 57899999999999999999999999997 389999999999998763
No 40
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.27 E-value=2.1e-06 Score=55.87 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=45.2
Q ss_pred CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHH
Q psy6637 21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVR 71 (105)
Q Consensus 21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ 71 (105)
..+ +++.+.++.+++++..+..+|...+.++++|++ +|+++|+||++|+.
T Consensus 61 ~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 61 SEV-MNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred HHh-hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 345 677788999999999999999999999999997 79999999999975
No 41
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.27 E-value=2.7e-06 Score=55.76 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=44.7
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
+...|..+.+++++.++...|...+.++++|++ +|+++|+||+.|+.+|
T Consensus 73 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 73 MSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 456789999999999999999999999999997 5999999999999864
No 42
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.26 E-value=3.2e-06 Score=55.18 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=46.0
Q ss_pred ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC---CeEEEEEehHHHHHh
Q psy6637 22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI---GRLVGVVGLKEVRND 73 (105)
Q Consensus 22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~---GrLVGvVT~kDL~ka 73 (105)
.+ +.+.+..+.+++++.++..+|...+.++++|++. |+++|+||+.|+.+|
T Consensus 62 ~~-~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 62 EV-ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred Hh-ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 44 5678999999999999999999999999999974 799999999999875
No 43
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=3.2e-06 Score=54.75 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=46.7
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
+..+ ++..+..+.+++++.++..+|...+.+.++|++ +|+++|+||.+|+.++
T Consensus 55 v~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~~ 108 (108)
T cd04596 55 IEKV-MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLKA 108 (108)
T ss_pred HHHH-hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhcC
Confidence 3344 567788999999999999999999999999997 7999999999998763
No 44
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.25 E-value=2.2e-06 Score=55.31 Aligned_cols=49 Identities=18% Similarity=0.353 Sum_probs=44.8
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
+++.+..+.+++++.++..+|...+.++++|++ +|+++|+||..|+..|
T Consensus 64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~~ 113 (113)
T cd04587 64 MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113 (113)
T ss_pred cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhccC
Confidence 677889999999999999999999999999998 5999999999998753
No 45
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=3.8e-06 Score=54.46 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=47.2
Q ss_pred CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
..+ +++.+..+.+++++..+..+|...+..+++|++ +|+++|+||+.||.+++
T Consensus 56 ~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 56 SDI-MDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred HHH-hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 344 567789999999999999999999999999997 79999999999998864
No 46
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.23 E-value=4.9e-06 Score=53.35 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=45.3
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~ 76 (105)
|.++.+.+++++.++..+|...+.++++|+++|+++|+|+.+||.++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~ 50 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAE 50 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhc
Confidence 46888999999999999999999999999988999999999999886643
No 47
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.23 E-value=5.2e-06 Score=52.98 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=44.4
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~ 76 (105)
.++++.+++++.++...|...+.++++|++.|+++|+||.+|+.+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhc
Confidence 3578899999999999999999999999988999999999999998643
No 48
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=4.3e-06 Score=54.01 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=44.5
Q ss_pred ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
.+ +++.+..+.+++++..+..+|...++..++|++ +|+++|+||++|+.+
T Consensus 61 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 61 EI-MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred Hh-ccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 44 567788999999999999999999999999987 599999999999865
No 49
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.21 E-value=2.4e-06 Score=55.71 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=40.8
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
++++.+++++..|..+|...+.++++|++. |+++|+||++|+.+
T Consensus 69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 69 LVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 568999999999999999999999999985 99999999999864
No 50
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.21 E-value=4.8e-06 Score=54.15 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=42.6
Q ss_pred cCCCceEEecc--CCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVER--TSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~--tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
+...+.++.++ +++.+|..+|...+...++|++ +|+++|+||+.|+.++
T Consensus 64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV 115 (115)
T ss_pred cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence 44557778776 7999999999999999999997 5999999999999764
No 51
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=7.5e-06 Score=53.77 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=43.7
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
.+.++.+++++.++..+|...++++++|++.|+++|+||.+|+.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~ 49 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAIS 49 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHH
Confidence 367889999999999999999999999999999999999999988753
No 52
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=4.4e-06 Score=57.61 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=44.6
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
+++.+.++.+++++.++..+|...+.++++|++.|+++|+||++|+.+
T Consensus 95 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 95 MTKKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE 142 (143)
T ss_pred cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 567899999999999999999999999999998899999999999864
No 53
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.19 E-value=6.2e-06 Score=56.75 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=44.8
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
+.+.+..+.+++++.+|..+|...+.++++|+++|+++|+||..|+.++
T Consensus 87 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~~ 135 (135)
T cd04621 87 MTEEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICRE 135 (135)
T ss_pred cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhhC
Confidence 5566788999999999999999999999999999999999999998763
No 54
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=5.6e-06 Score=55.25 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=43.5
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
+...+..+.+++++.+|..+|..-++++++|++ +|+++|+||..|+.+
T Consensus 77 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 77 KSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 455688899999999999999999999999998 499999999999875
No 55
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.18 E-value=5.9e-06 Score=55.53 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=45.4
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
...+ +.+.+.++.+++++.++..+|...+.+.++|++ +|+++|+||.+||.+
T Consensus 60 v~di-m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 60 VRDV-INRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHh-cCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 3344 456788999999999999999999999999997 699999999999864
No 56
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.18 E-value=3.5e-06 Score=68.05 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=50.5
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~ 77 (105)
+-+.|+++.+++|+.++..+|...|+|.+||.+++++||++|..|+.+||...
T Consensus 178 ~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g 230 (294)
T COG2524 178 MSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANG 230 (294)
T ss_pred ccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcC
Confidence 56789999999999999999999999999999999999999999999999874
No 57
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.18 E-value=7.1e-06 Score=53.10 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=44.0
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
.|+.+.+++++.++..+|...+.++++|++.|+++|+|+.+|+.++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~ 49 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASP 49 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhh
Confidence 467889999999999999999999999999999999999999988764
No 58
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.17 E-value=6.9e-06 Score=52.46 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=43.9
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
+++.+..+.+++++..+..+|..-+..+++|++ +|+++|+||..|+.+
T Consensus 58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 58 MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 567789999999999999999999999999986 689999999999875
No 59
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.17 E-value=7.7e-06 Score=52.81 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=45.6
Q ss_pred CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
..+ +++.+..+.+++++.++..+|...+...++|++.++++|+||++|+.+
T Consensus 61 ~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~ 111 (112)
T cd04802 61 GEV-MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM 111 (112)
T ss_pred HHh-cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence 344 567788999999999999999999999999999889999999999865
No 60
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.16 E-value=6.3e-06 Score=53.06 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=46.4
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
...+ +++.+..+.+++++.++..+|..-+...++|++ +|+++|+||..||.+
T Consensus 61 v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 61 VADV-MTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHh-hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 3445 677788999999999999999999999999997 899999999999875
No 61
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.16 E-value=1.1e-05 Score=51.96 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=44.2
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~ 76 (105)
.++++.+++++.++..+|...+.++++|++.|+++|+|+.+|+.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~ 50 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIAR 50 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhc
Confidence 4678899999999999999999999999988999999999999987643
No 62
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.16 E-value=5.4e-06 Score=55.17 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=46.0
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC---CeEEEEEehHHHHHh
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI---GRLVGVVGLKEVRND 73 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~---GrLVGvVT~kDL~ka 73 (105)
+..+ ++..++++.+++++.++..+|...+.+.++|+++ |+++|+||++|+.++
T Consensus 73 ~~~~-~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 73 VYDA-MSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred HHHH-hcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 3445 6677889999999999999999999999999965 999999999998763
No 63
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.16 E-value=6.9e-06 Score=52.49 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=46.2
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
...+ +...+..+.+++++.++..+|...+.++++|++ +|+++|+||++|+.+
T Consensus 56 v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 56 LEDI-MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HhHh-hcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 4444 667889999999999999999999999999997 699999999999864
No 64
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.16 E-value=5.8e-06 Score=53.30 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=41.7
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
..+..+.+++++..+..+|...+.++++|++. |+++|+||++|+.+
T Consensus 64 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 34778999999999999999999999999974 99999999999864
No 65
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.15 E-value=8.6e-06 Score=56.87 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=44.5
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
.+.++.+++++.+|...|...+..++||++ +|+++|+||.+||.+++..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 467899999999999999999999999997 6999999999999988754
No 66
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.15 E-value=8.9e-06 Score=53.03 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=44.4
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
|.|..+.+++++.++...|...+..+++|++ +|+++|+|+.+||.+++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 4577889999999999999999999999997 599999999999998764
No 67
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.14 E-value=1e-05 Score=52.21 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=43.1
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~ 75 (105)
.+..+.+++++..+..+|...+.++++|+++ |+++|+||.+|+++++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~ 50 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA 50 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh
Confidence 4678899999999999999999999999984 99999999999988764
No 68
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.13 E-value=6.2e-06 Score=54.45 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=41.5
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHH
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRN 72 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~k 72 (105)
.+.++.+++++..|..+|...++++++|++. |+|+|+||+.||.+
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 69 NITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 5789999999999999999999999999974 69999999999865
No 69
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.13 E-value=9.1e-06 Score=52.00 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=42.5
Q ss_pred cCCCceEEec-cCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVE-RTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~-~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
++..|..+.. ++++.+|..+|...+.+.++|++ +|+++|+||++|+.+
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 60 MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 5555677777 99999999999999999999997 699999999999865
No 70
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=9.3e-06 Score=52.56 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=43.5
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
+.++.+++++.++..+|...+++.++|++ +|+++|+|+.+|+.+++..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~ 51 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG 51 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence 56789999999999999999999999997 5899999999999988753
No 71
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=1.1e-05 Score=51.95 Aligned_cols=52 Identities=8% Similarity=0.136 Sum_probs=45.4
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
...+ ++..+.++.+++++.++..+|..-+.++++|.+ +|+++|+||++|+.+
T Consensus 57 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 57 VEDI-MTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHh-cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 3344 567788999999999999999999999999986 689999999999865
No 72
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.12 E-value=1.1e-05 Score=53.32 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=42.8
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.++.+++|+.++..+|...+.++++|++ .|+++|+||.+|+.++..
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 56789999999999999999999999996 799999999999998653
No 73
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.12 E-value=7.3e-06 Score=64.05 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=46.8
Q ss_pred ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
.+ +.+.|.++.+++++.+|...|...++.+++|++ +|+++|+||++|+.+|
T Consensus 267 ~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 267 EA-MTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred Hh-cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 45 667889999999999999999999999999998 6999999999999875
No 74
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.12 E-value=1.1e-05 Score=51.57 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=42.6
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
.|.++.+++++..|...|...+.++++|++ +|+++|+||.+|+.++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence 467889999999999999999999999997 79999999999999864
No 75
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.11 E-value=1.1e-05 Score=53.18 Aligned_cols=47 Identities=32% Similarity=0.375 Sum_probs=43.1
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
++++.+++++..+...|...+++.+||++ +|+++|+||.+|+.++..
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 57899999999999999999999999997 599999999999988774
No 76
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.11 E-value=6e-06 Score=66.72 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=49.4
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
|-+.++++.+++.++.|..+|..-|+.++.||+ +|+.||+||+.|+++.|.+
T Consensus 240 M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 240 MRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred hccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 668899999999999999999999999999999 9999999999999998854
No 77
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.10 E-value=1.3e-05 Score=54.20 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=43.6
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
+.|+++.+++++.++..+|+..+.+++||++ .|+++|+||.+|+.+.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~ 50 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSL 50 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 4688999999999999999999999999997 59999999999998654
No 78
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.09 E-value=1.4e-05 Score=50.81 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=42.7
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI 74 (105)
.++.+.+++++..+...|...+.+.++|+++|+++|+||.+|+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~ 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc
Confidence 36778999999999999999999999999999999999999998753
No 79
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.09 E-value=1.8e-05 Score=51.02 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=42.8
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
...++.+++++.++...|...+...++|++.|+++|+||.+|+.+++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~ 49 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMA 49 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHH
Confidence 456789999999999999888888889999999999999999998764
No 80
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.06 E-value=1.7e-05 Score=52.01 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=44.1
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.+.++.+++++.++..+|..-+.++++|++ .|+++|+||.+||.+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 51 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHAR 51 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhc
Confidence 5678899999999999999999999999987 599999999999987764
No 81
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.06 E-value=2e-05 Score=49.17 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=44.0
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~k 72 (105)
+...+..+.+++++..+...|...+..+++|++. |+++|+||..|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 64 MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred hcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 5677888999999999999999999999999974 99999999999876
No 82
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.05 E-value=1.8e-05 Score=51.67 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=43.0
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
++.+.+.+++.++..+|...+++.++|++.|+++|+||.+|+.+++.
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~ 49 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALR 49 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhh
Confidence 56788999999999999999999999999999999999999988654
No 83
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.05 E-value=1.5e-05 Score=52.29 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=46.1
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
...+ ++..++.+.+++++.++..+|...+...++|.+ +|+++|+||++|+.+
T Consensus 69 ~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 69 AHQI-MTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HHHh-hcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 3445 667899999999999999999999999999986 599999999999875
No 84
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.03 E-value=2.5e-05 Score=50.21 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=43.2
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
.++.+.+++++.++...|...+..+++|++ .|+++|+||.+++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence 567889999999999999999999999997 589999999999987764
No 85
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.03 E-value=1.9e-05 Score=51.66 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=42.2
Q ss_pred cCCCceEEec--cCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVE--RTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~--~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
+.+.+..+.. ++++.++..+|...+.++++|++ +|+++|+||++|+.+
T Consensus 63 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 63 MTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 4555667766 99999999999999999999997 699999999999875
No 86
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.03 E-value=3e-05 Score=50.05 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=48.5
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~ 77 (105)
+.++++.+++++..|..++...++..++|.+.++|+|+||.+|+.+++...
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~ 57 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAG 57 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999998655
No 87
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.02 E-value=2.9e-05 Score=50.01 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=41.4
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
.+.++.+++++..+..+|...+.++++|++.|+++|+||.+|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~ 47 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALR 47 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHH
Confidence 3567889999999999999999999999988999999999999753
No 88
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.02 E-value=2.6e-05 Score=49.78 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=43.1
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
+.+.++.++.++..+...|...+.++++|++ +|+++|+|+.+|+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 4577889999999999999999999999998 58999999999998765
No 89
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.02 E-value=2.9e-05 Score=50.13 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=43.2
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI 74 (105)
.|..+.+++++.++...|...+.++++|++.|+++|+|+.+|+.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~ 48 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHH
Confidence 46788999999999999999999999999889999999999998876
No 90
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.01 E-value=2e-05 Score=51.18 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=42.7
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
.+..+.+++++.++..+|...+++.++|++ +|+++|+||.+|+.++.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC
Confidence 467889999999999999999999999997 69999999999998754
No 91
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.01 E-value=1.9e-05 Score=54.40 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=44.8
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
+.++++.+++++..+...+...+...++|++.|+++|+||.+|+.+++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLV 49 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHH
Confidence 3578999999999999999999999999998899999999999988764
No 92
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.01 E-value=2.8e-05 Score=49.75 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=42.3
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
..++.+++++.+|..+|...+.+.++|++.|+++|++|.+||.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~ 49 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA 49 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh
Confidence 34678999999999999999999999999999999999999988763
No 93
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.01 E-value=2.2e-05 Score=51.52 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=42.6
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.++.+++|+.++...|...+.++++|++ +|+++|+||.+|+.++..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~ 50 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMG 50 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHh
Confidence 56789999999999999999999999986 899999999999988663
No 94
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.00 E-value=2e-05 Score=52.16 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=42.0
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~ 75 (105)
++++.+++++.+|...|...+.+++||++. |+++|+||.+|+.+++.
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~ 51 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHH
Confidence 567888999999999999999999999984 89999999999988764
No 95
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.00 E-value=2.3e-05 Score=51.31 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=41.8
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
.|.++.+++++.++...|...+.++++|++ +|+++|+||.+|+.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 377889999999999999999999999997 6899999999999874
No 96
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.98 E-value=3.3e-05 Score=49.47 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=42.8
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
.++.+.+++++.++...|...+..+++|++ +|+++|+||.+|+.+++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 50 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA 50 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence 356788999999999999999999999997 599999999999998764
No 97
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.98 E-value=2.5e-05 Score=50.05 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=42.5
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.++.+++++.++..+|...+.++++|++ +|+++|+||.+||.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILF 50 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHh
Confidence 56789999999999999999999999998 489999999999988764
No 98
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.97 E-value=2.8e-05 Score=50.23 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=43.1
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
+...+.++.+++++.++...|...+..+++|++ +|+++|+||..||.+
T Consensus 64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 64 MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 456788899999999999999999999999997 589999999999864
No 99
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.97 E-value=2.8e-05 Score=50.54 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=42.4
Q ss_pred CceEEeccCCHHHHHHHHHHhC-CcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVG-VNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lg-lr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
.|.++.+++++..+...|...+ .+.++|++.|+++|+||.+|+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTA 50 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHh
Confidence 3678899999999999998888 77888989999999999999998664
No 100
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.97 E-value=4.2e-05 Score=49.22 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=42.5
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI 74 (105)
.+.++..++++.++..+|...+.+.++|++.|+++|+|+.+|+.+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~ 48 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHH
Confidence 46788899999999999999999999999999999999999998743
No 101
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.97 E-value=3.6e-05 Score=50.18 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=42.4
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-C-CeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-I-GRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~-GrLVGvVT~kDL~kaI 74 (105)
.+..+.+++++.++...|...+.++++|++ + |+++|+||.+|+++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV 50 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence 467889999999999999999999999987 4 8999999999999865
No 102
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.97 E-value=2.8e-05 Score=51.08 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=43.8
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhcc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~~ 76 (105)
.+..+.+++++.++..+|...+...++|++. |+++|+|+.+||.+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~ 52 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG 52 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc
Confidence 4678899999999999999999999999975 899999999999987753
No 103
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.96 E-value=2.9e-05 Score=49.59 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=44.8
Q ss_pred CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
..+ +.+.+..+.+++++..+..+|...+...++|++ +|+++|+||++++.+
T Consensus 54 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 54 GDH-AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred hhh-cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 344 566678899999999999999999999999997 589999999999864
No 104
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.96 E-value=3.5e-05 Score=50.03 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=44.0
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
-.|+++.+++++..+...|...+.++++|++ +|+++|+||.+|+.+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 51 (113)
T cd04607 2 IKQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL 51 (113)
T ss_pred CcceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh
Confidence 3588999999999999999999999999986 699999999999988664
No 105
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.96 E-value=2.8e-05 Score=49.58 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=38.6
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEe-eCCeEEEEEehHHHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVT-AIGRLVGVVGLKEVRN 72 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt-~~GrLVGvVT~kDL~k 72 (105)
++..++.+.+++++..+..+|.. .- .++|+ ++|+++|+||++|+.+
T Consensus 63 ~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 63 MGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred hcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 56778899999999999999998 43 45555 5799999999999875
No 106
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.95 E-value=5.7e-05 Score=48.75 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=41.0
Q ss_pred eEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637 30 FQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 30 ~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI 74 (105)
..+.+++|+.++..+|...+...++|+++|+++|+|+.+|+.++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~ 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc
Confidence 467889999999999999999999999889999999999998754
No 107
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.94 E-value=2.4e-05 Score=52.19 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=43.6
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
.++.+.+++|+.++...|...+...++|++ .|+++|+||.+|++++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~ 50 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL 50 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence 467899999999999999999999999996 699999999999998764
No 108
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.94 E-value=2.6e-05 Score=53.66 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=43.5
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~ 75 (105)
.++++.+++++..|...|...+.+.++|++. |+++|+||.+||.+++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 3678899999999999999999999999985 99999999999998774
No 109
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=3e-05 Score=50.49 Aligned_cols=53 Identities=23% Similarity=0.356 Sum_probs=44.0
Q ss_pred cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEE----EEeeCCeEEEEEehHHHHH
Q psy6637 19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHA----YVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l----~Vt~~GrLVGvVT~kDL~k 72 (105)
....+ +++.+.++.+++++..+..+|...+.+++ .|.++|+++|+||.+|+.+
T Consensus 62 ~v~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 62 PVSEV-MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cHHHh-cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 34556 78889999999999999999998886433 4556899999999999864
No 110
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.93 E-value=3.7e-05 Score=51.36 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=41.3
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
.|.++.+++++.++...|...+.++++|++ +|+++|+|+.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 377899999999999999999999999997 699999999999985
No 111
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.93 E-value=3e-05 Score=50.74 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=43.4
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~ 75 (105)
.+.++.+++++..+..+|..-+.+.++|+++ |+++|+||.+||.++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence 4678899999999999999999999999885 99999999999998764
No 112
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.93 E-value=3e-05 Score=50.00 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=42.6
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
.++.+.+++++.++...|...+.+.++|++ .|+++|+|+.+|+.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence 467889999999999999988999999987 699999999999988653
No 113
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.92 E-value=4.9e-05 Score=48.94 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHH
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVR 71 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ 71 (105)
+.+.++.+++++.+|...|...+.+.++|+++|+++|+||.+|+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~ 45 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIV 45 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHH
Confidence 356789999999999999999999999999889999999999986
No 114
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.92 E-value=3.2e-05 Score=50.01 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=40.4
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
+.+.+.++.+++++.+|..+|...+ .++|++ +|+++|+||++|+.++
T Consensus 69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred hcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 6677899999999999999998755 577876 6999999999999864
No 115
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.90 E-value=3.3e-05 Score=49.71 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=42.2
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~ 75 (105)
+.++.+++++.++..+|...+.++++|++. |+++|+|+.+++.+++.
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALA 50 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHH
Confidence 567889999999999999899999999985 99999999999988754
No 116
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.90 E-value=6.9e-05 Score=48.28 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=42.9
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI 74 (105)
.++++.+++++.++...|..-+.+.++|++.|+++|+||.+|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 48 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKV 48 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 46778999999999999999999999999989999999999998865
No 117
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.90 E-value=4.2e-05 Score=49.72 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=40.4
Q ss_pred ceEEeccCCHHHHHHHHHHhC-CcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVG-VNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lg-lr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
..++.+++++.+|...|..-+ .++++|++ +|+++|+||.+||.++..
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 356789999999999987665 89999997 599999999999988764
No 118
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.89 E-value=6.4e-05 Score=48.44 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=43.1
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
.+..+..+.++.+|...|...+.++++|++.|+++|+|+.+|+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~ 50 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALR 50 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHh
Confidence 457888999999999999988999999998899999999999988763
No 119
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=2.7e-05 Score=52.06 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=36.1
Q ss_pred ccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHH
Q psy6637 34 ERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRN 72 (105)
Q Consensus 34 ~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~k 72 (105)
+++++.++...|...+.++++|++. |+++|+||+.|+.+
T Consensus 85 ~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 85 ENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 6899999999999999999999984 79999999999875
No 120
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=5.2e-05 Score=50.39 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=41.8
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
+.++.+++++..+..+|...+.+.++|++ +|+++|+||.+|+.+++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 46788999999999999999999999997 59999999999998765
No 121
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=3.6e-05 Score=50.32 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=42.0
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
.++++.+++++..+...|...+.++++|++ .|+++|+|+.+||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 467899999999999999999999999997 5999999999999875
No 122
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.89 E-value=1.1e-05 Score=54.54 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=44.3
Q ss_pred cCCccccCCCceEEeccCCHHHHHHHHHHh---------CCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLV---------GVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~L---------glr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
....+ ++..+.++.+++++..+..++..+ +.++++|.+ +|+++||||.+|+.+++
T Consensus 60 ~v~~i-m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 60 PVSKA-LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred cHHHH-hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 44556 678889999999999999865332 577888876 59999999999998864
No 123
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.89 E-value=5.1e-05 Score=64.52 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=54.7
Q ss_pred CChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHH
Q psy6637 1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRN 72 (105)
Q Consensus 1 ~~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~k 72 (105)
|++|++.+ +....-.++.. +-..|+++.+++++.++..+|...+++.++|++. |+|+|+||.+|++.
T Consensus 83 ~~~e~~~~----~v~kvk~~e~g-~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~ 153 (495)
T PTZ00314 83 CSIEEQVE----EVRKVKRFENG-FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF 153 (495)
T ss_pred CCHHHHHH----HHhhccccccc-cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh
Confidence 45555433 45555556666 4588999999999999999999999999999986 79999999999964
No 124
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.87 E-value=3.9e-05 Score=51.69 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=42.8
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
.++++.+++++..+..+|...+.++++|++ .|+++|+||.+||.++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~ 51 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAE 51 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhc
Confidence 467889999999999999999999999997 589999999999987653
No 125
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.87 E-value=3.8e-05 Score=63.92 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=50.2
Q ss_pred ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
.+ +.+.++++.+++++.+|..+|+..++..+||++ +|+++|+||.+|+.+++...
T Consensus 199 ~i-m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 199 SI-MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HH-hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 44 677889999999999999999999999999997 79999999999999988765
No 126
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.86 E-value=2.8e-05 Score=61.72 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=46.5
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
.|+.+.+++++.++...|+.-+.+.++|++ +|.++|+||+.|+.++|.+.
T Consensus 141 ~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 141 QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 466899999999999999999999999998 79999999999999999775
No 127
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.86 E-value=4.9e-05 Score=49.47 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=42.2
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI 74 (105)
.+.++.+++++..+...|...+.++++|+++ |+++|+|+.+||.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 4678889999999999999999999999975 9999999999998754
No 128
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.85 E-value=7.1e-05 Score=48.31 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=41.8
Q ss_pred cCCCceEEeccCCHHHHHHHHHH-hCCcEEEEeeCC--eEEEEEehHHH
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSL-VGVNHAYVTAIG--RLVGVVGLKEV 70 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~-Lglr~l~Vt~~G--rLVGvVT~kDL 70 (105)
+...++++.+++++..+..++.. .++++++|++.+ +|+|+||.+|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 68 MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 44578899999999999999999 599999999965 99999999986
No 129
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.85 E-value=8.1e-05 Score=46.40 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=43.6
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhcc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~~ 76 (105)
.++.+..++++..+..+|...+.++++|++. |+++|+|+.+|+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE 51 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence 4677889999999999999999999999985 899999999999887754
No 130
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.84 E-value=7.8e-05 Score=47.96 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=43.0
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-C-CeEEEEEehHHHHHhhcc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-I-GRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~-GrLVGvVT~kDL~kaI~~ 76 (105)
.+++.+++++.++..+|...+..+++|++ . |+++|+||.+||.++...
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence 56789999999999999999999999987 4 899999999999988753
No 131
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.84 E-value=8.1e-05 Score=62.24 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=56.3
Q ss_pred HHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHhh
Q psy6637 10 EEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRNDS 74 (105)
Q Consensus 10 e~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~kaI 74 (105)
+.+++.+...++.. +.+.|+++.+++++.++..+|...+++.+||+++ |+++|+||.+||..+.
T Consensus 72 q~~~V~~Vk~~~~~-~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~ 139 (450)
T TIGR01302 72 QAEQVKRVKRAENG-IISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK 139 (450)
T ss_pred HHHHHhhhccccCc-eecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh
Confidence 34567788888888 6689999999999999999999999999999986 4999999999997643
No 132
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.83 E-value=7.9e-05 Score=48.07 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=42.4
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
.|+.+.+++|+..+...|...+.++++|++ .|+++|+||.+|+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~ 49 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYA 49 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhh
Confidence 378899999999999999999999999987 58999999999998753
No 133
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.83 E-value=6.9e-05 Score=48.98 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=41.3
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRND 73 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~ka 73 (105)
.|.++.+++++.++..+|...+...++|++. |+++|+|+.+|+..+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~ 52 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL 52 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh
Confidence 5678899999999999999999999999984 899999999998753
No 134
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.82 E-value=4.8e-05 Score=64.62 Aligned_cols=55 Identities=15% Similarity=-0.014 Sum_probs=48.8
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC---CeEEEEEehHHHHHhhc
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI---GRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~---GrLVGvVT~kDL~kaI~ 75 (105)
...+ +++.+.++.+++++.+|..+|...+.++++|+++ |+++|+||++|+.+++.
T Consensus 514 v~di-m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 514 AADY-AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred HHHh-ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 3445 6788899999999999999999999999999974 58999999999999873
No 135
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.80 E-value=0.00011 Score=47.40 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=41.8
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
.+.++.+++++.++...|...+.+.++|++ .|+++|+|+.+++..+.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 50 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD 50 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc
Confidence 357889999999999999999999999997 69999999999998653
No 136
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.80 E-value=6.4e-05 Score=63.87 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=49.9
Q ss_pred CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
+.+ +.+.+.++.+++++.+|..+|...++++++|++ +|+|+|+||++||.++....
T Consensus 151 ~di-Mt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 151 RDV-MSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred HHh-ccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 344 667899999999999999999999999999998 79999999999999876544
No 137
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.79 E-value=3.7e-05 Score=64.73 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=53.1
Q ss_pred hcCcccCCccccC-CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 14 MGQKVSFEQCHID-PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 14 l~~~idl~~~~id-~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.+.+..+.+ |+ ..|.++.+++++.++..+|...++++++|++ +|+++|+||++||.+...
T Consensus 242 l~~~~~V~~i-M~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 242 INQSIPVSYI-MTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred hhcCCCHHHh-ccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 4455556666 77 7899999999999999999999999999998 799999999999987554
No 138
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.79 E-value=9.1e-05 Score=48.20 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=41.1
Q ss_pred ceEEeccCCHHHHHHHHHHhC-CcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVG-VNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lg-lr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
+.++.+++++..+...|...+ .+.++|++.|+++|+|+.+|+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLS 50 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHh
Confidence 346789999999999998887 88999997799999999999987654
No 139
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.78 E-value=6.3e-05 Score=50.49 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=43.9
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
.+..+.+++++..+..+|...+.++++|++ +|+++|+|+.+|+.+++..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence 367889999999999999999999999997 5999999999999987753
No 140
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.75 E-value=6.7e-05 Score=62.00 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=50.4
Q ss_pred ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
.++..+ + ..|+.|.+++++..+...|+.-+.+.++|++ +|.++|+||..|+.+.+.+.
T Consensus 255 ~~l~~~-~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 255 FDWQSL-L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred CCHHHH-c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence 344444 4 3589999999999999999999999999998 69999999999999999654
No 141
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.75 E-value=8.1e-05 Score=58.52 Aligned_cols=51 Identities=8% Similarity=0.034 Sum_probs=45.0
Q ss_pred cCC--CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 25 IDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 25 id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.+ .|.++.+++|+.+|..+|...+.+.++|++ +|+++|+||.+|+++++.
T Consensus 208 m~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 208 MHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred hCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 555 789999999999999999999988888876 899999999999988764
No 142
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.75 E-value=5.6e-05 Score=66.15 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=49.2
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~ 77 (105)
+-..|++|..++.+..|..+|.+.+++|++|+++|+.+||||..|++++...+
T Consensus 220 mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 220 MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLFSQN 272 (610)
T ss_pred hccCceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhhCCC
Confidence 44678999999999999999999999999999999999999999999988754
No 143
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.74 E-value=8.6e-05 Score=62.57 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=49.8
Q ss_pred CccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 21 EQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 21 ~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
..+ +.+.|.++.+++++.+|..+|...++++++|++ +|+++|+||.+|+.+++...
T Consensus 71 ~di-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~ 127 (546)
T PRK14869 71 RDL-EIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI 127 (546)
T ss_pred HHh-cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhh
Confidence 344 567899999999999999999999999999998 69999999999999877653
No 144
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.73 E-value=9.6e-05 Score=62.77 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=48.4
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
+.+.++++.+++++.+|..+|...++++++|++ +|+|+|+||++||.++....
T Consensus 152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 567799999999999999999999999999998 79999999999999876544
No 145
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.71 E-value=8.5e-05 Score=63.45 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=44.2
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
.++++.+++++.+|..+|...++++++|++ +|+|+|+||++|+.+..
T Consensus 172 ~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 172 KLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 678999999999999999999999999998 69999999999998864
No 146
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.70 E-value=0.0001 Score=57.57 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=47.6
Q ss_pred CccccCCC--ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 21 EQCHIDPA--PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 21 ~~~~id~s--P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.+ +++. +.++.+++|+.+|..+|...+..+++|++ +|+++|+||.+|+.+++.
T Consensus 200 ~~i-m~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 200 HHL-MRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred HHH-hccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence 334 6777 89999999999999999999999999997 799999999999988763
No 147
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.70 E-value=0.00018 Score=45.80 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=41.7
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHh
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRND 73 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~ka 73 (105)
+.++++..++++.++...|...+...++|++.|+++|+++.+||.+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~ 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc
Confidence 45677899999999999999888888999988999999999999764
No 148
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.68 E-value=0.00018 Score=46.37 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=41.7
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.++.+++++..+...|...+.+.++|++ .|+++|+|+.+|+.++..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL 50 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence 56788999999999999999999999987 599999999999987653
No 149
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.64 E-value=0.0003 Score=60.12 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=53.8
Q ss_pred CChHHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHh
Q psy6637 1 MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRND 73 (105)
Q Consensus 1 ~~~~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~ka 73 (105)
+++|++...-..-+ .++.- +-+.|+++.+++++.++..+|...++..++|+++ |+|+|+||.+|+...
T Consensus 87 as~E~q~~~Irkvk----~~~~g-mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v 158 (505)
T PLN02274 87 NTAEEQAAIVRKAK----SRRVG-FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV 158 (505)
T ss_pred CCHHHHHHHHHHhh----ccccc-ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc
Confidence 35566555444444 34444 4488999999999999999999999999999986 799999999999653
No 150
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.60 E-value=0.00014 Score=55.56 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=56.7
Q ss_pred CcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccCchhhhcc
Q psy6637 16 QKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSI 84 (105)
Q Consensus 16 ~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~~~~~~~~ 84 (105)
..+--..+ +....|.++++.++.+|..+|+..|+.+++|.+.|++||-||-.++.++.-..-+.++++
T Consensus 63 ~~ita~~i-M~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~ 130 (187)
T COG3620 63 TRITAKTI-MHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSL 130 (187)
T ss_pred ceEeHhhh-ccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhh
Confidence 45555556 778889999999999999999999999999999999999999999998885443333433
No 151
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.60 E-value=0.00018 Score=61.11 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=48.6
Q ss_pred cccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 17 KVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 17 ~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
.+.-... +...|+++.+++++.++..+|...+.++++|++.|+++|+||.+||..
T Consensus 87 ~VKv~ei-m~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~ 141 (475)
T TIGR01303 87 FVKSRDL-VLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLG 141 (475)
T ss_pred hcchhhc-cccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhc
Confidence 4444455 668899999999999999999999999999999999999999999854
No 152
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.59 E-value=0.00014 Score=59.46 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=48.8
Q ss_pred cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
..+.+ +.+.+.++.+++++.++..+|...++++++|++ +|+++|+||.+|+++++.
T Consensus 336 ~v~~i-m~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 336 TVKDL-HLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF 392 (454)
T ss_pred CHHHh-CcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 34445 678899999999999999999999999999997 589999999999998664
No 153
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.56 E-value=0.00025 Score=59.75 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=52.8
Q ss_pred HHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 11 EEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 11 ~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
.+++...-.++.. +...|+++.+++++.++..+|...++..++|++ .|+++|+||.+||...
T Consensus 80 ~~~I~~vk~~~di-m~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~ 142 (486)
T PRK05567 80 AEEVRKVKRSESG-VVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFE 142 (486)
T ss_pred HHHHHHhhhhhhc-ccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhc
Confidence 3445555566666 668899999999999999999999999999998 7999999999999754
No 154
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.54 E-value=0.00025 Score=45.24 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=41.8
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
+.|..+..++++..+...|...+...++|++ .|+++|+||.+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 50 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET 50 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc
Confidence 3577889999999999999999999999987 58999999999987543
No 155
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.53 E-value=0.0002 Score=59.88 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=47.3
Q ss_pred cC-CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 25 ID-PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 25 id-~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
+. ..++++.+++++.++..+|...+.++++|++ +|+++|+||++|+.++++.
T Consensus 149 m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~ 202 (450)
T TIGR01302 149 MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF 202 (450)
T ss_pred hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence 44 3789999999999999999999999999998 7999999999999998753
No 156
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.50 E-value=0.0003 Score=45.17 Aligned_cols=47 Identities=26% Similarity=0.200 Sum_probs=41.0
Q ss_pred eEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 30 FQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 30 ~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
.++.+++++..+...|...+.++++|++ .|+++|+|+.+++++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~ 52 (114)
T cd04604 5 PLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK 52 (114)
T ss_pred cccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhc
Confidence 3578899999999999888889999987 5899999999999987753
No 157
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.49 E-value=0.00025 Score=53.72 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=45.7
Q ss_pred cCCC-ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 25 IDPA-PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 25 id~s-P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.+. +.++.+++++.++...|...+.++++|++ +|+++|+||.+|+.+++.
T Consensus 161 m~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 161 MQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 5566 88899999999999999999999999998 799999999999988764
No 158
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.48 E-value=0.00035 Score=59.42 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=48.9
Q ss_pred CcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHH
Q psy6637 16 QKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 16 ~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
..+..... +.+.|+++.+++++.++..+|...+++.++|++ +|+++|+||.+||..
T Consensus 87 ~~VKv~~i-Mi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~ 143 (479)
T PRK07807 87 AWVKSRDL-VFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG 143 (479)
T ss_pred hhcccccc-cccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence 34444566 678999999999999999999999999999996 789999999999864
No 159
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.46 E-value=0.00032 Score=46.02 Aligned_cols=46 Identities=22% Similarity=0.151 Sum_probs=40.9
Q ss_pred eEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHhhc
Q psy6637 30 FQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 30 ~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~kaI~ 75 (105)
..+.+++++.++..++...+.+.++|++. |+++|+|+.+|+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~ 54 (105)
T cd04591 5 VLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK 54 (105)
T ss_pred EEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH
Confidence 46789999999999999999989999876 89999999999988664
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.46 E-value=0.00037 Score=59.59 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=45.1
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
+.++.+++++.+|..+|...+..+++|++ .|+|+|+||++|+.+++..
T Consensus 175 lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 175 LVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 67999999999999999999999999997 7999999999999998854
No 161
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.43 E-value=0.00033 Score=59.06 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=52.0
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
++.+ |..+|+++.+.||+..|.++|---|+.-+||++ +.+|+||||+.|+++++--.
T Consensus 251 ieKV-Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 251 IEKV-MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred HHHH-hccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 4445 788999999999999999999999999999998 89999999999999988655
No 162
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.39 E-value=0.00033 Score=53.56 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=38.8
Q ss_pred EEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637 31 QLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 31 qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~ 76 (105)
||++++|+.-++.|+... .-++|+++|++|||||+.|+.|.+.+
T Consensus 142 ~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 142 TVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred cCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHHHHHhc
Confidence 789999999999997654 57889999999999999999998754
No 163
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.36 E-value=0.00032 Score=59.64 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=48.6
Q ss_pred ccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 18 VSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 18 idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
+..+.+ +++.+.++.+++++.++.+.+...+.+++||++ +|+++|+||.+|+.+++
T Consensus 447 ~~V~di-m~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l 503 (574)
T PRK01862 447 TQMREL-IQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDL 503 (574)
T ss_pred CcHHHH-hcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHh
Confidence 334445 677888999999999999999999999999998 68999999999998865
No 164
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.35 E-value=0.0004 Score=57.59 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=48.4
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
|.+...|+.++|+......+|..-|+++++|.+ .|++|||||-.|+..|+-
T Consensus 321 mt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 321 MTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred ccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 788889999999999999999999999999998 899999999999998874
No 165
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.35 E-value=0.00024 Score=58.90 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=48.8
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
|-+..++++.+||+..++.++...+++-++|++ +.||||+||.+||.+....+
T Consensus 251 MSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~ 304 (382)
T COG3448 251 MSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPS 304 (382)
T ss_pred cCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcc
Confidence 778899999999999999999999999999998 78999999999998865544
No 166
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.33 E-value=0.00045 Score=59.10 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=42.1
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeC----CeEEEEEehHHHHHh
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAI----GRLVGVVGLKEVRND 73 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~----GrLVGvVT~kDL~ka 73 (105)
.|.++.+++|+.+|..+|...+++.++|+++ |+|+||||.+||+++
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~ 155 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS 155 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc
Confidence 4579999999999999999999999999985 899999999999754
No 167
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.32 E-value=0.00061 Score=57.45 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=46.1
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
..++++.+++++.++..+|...++++++|++ +|+++|+||.+||.+++..
T Consensus 156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~ 206 (486)
T PRK05567 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEF 206 (486)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhC
Confidence 5678999999999999999999999999997 8999999999999988743
No 168
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.28 E-value=0.00076 Score=55.17 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=42.2
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI 74 (105)
+.+.+..+.+++++..+..+|...+ ..+|+++|+++||||+.||.+++
T Consensus 406 m~~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 406 MSKKFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred cCCCCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHHHhh
Confidence 6677889999999999999998754 47788899999999999999886
No 169
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.22 E-value=0.0007 Score=57.66 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=44.6
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
.++++.+++++.+|..+|...+++.++|++ +|+++|+||++|+.++..
T Consensus 170 ~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 170 KLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 678899999999999999999999999997 799999999999998764
No 170
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.22 E-value=0.00067 Score=43.78 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=35.9
Q ss_pred EeccCCHHHHHHHHHHhC-----CcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 32 LVERTSLLKVHSIFSLVG-----VNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 32 v~~~tsL~kv~~LF~~Lg-----lr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
+.+++|+..+..+|...+ .++++|++ .|+++|+||.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~ 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence 567899999999998777 57888887 6899999999998764
No 171
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.19 E-value=0.0016 Score=41.62 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=38.8
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
.+.+..++++.++...|...+...++|++ +|+++|+|+.+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 35677888999999999888989999987 4999999999999764
No 172
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.16 E-value=0.002 Score=53.78 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=43.2
Q ss_pred cCCCceEEeccCCHHHHHHHHHH-----hCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSL-----VGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~-----Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
+.+..+++.+++|+.++...|+. .+...+||++ .|+++|+|+.+|+..+-
T Consensus 137 Mt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~ 192 (449)
T TIGR00400 137 MTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK 192 (449)
T ss_pred CcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC
Confidence 66778999999999999999986 5677899886 79999999999997653
No 173
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.11 E-value=0.0013 Score=54.61 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=48.1
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
.|+.|.+.+++.++...|+.-+.+-+.|++ +|-..|+||..|+.+.|.+.
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCC
Confidence 789999999999999999999999999998 89999999999999999886
No 174
>PRK11573 hypothetical protein; Provisional
Probab=97.10 E-value=0.0014 Score=54.53 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=47.1
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
.|+.|++++++.++...|+.-+.+-+.|++ +|..+|+||..|+.+.|-+.
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGe 313 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD 313 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCC
Confidence 588999999999999999999999999998 79999999999999998766
No 175
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.99 E-value=0.004 Score=49.49 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=50.5
Q ss_pred HHhcCcccCCccc----cCC--CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhh
Q psy6637 12 EEMGQKVSFEQCH----IDP--APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDS 74 (105)
Q Consensus 12 ~~l~~~idl~~~~----id~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI 74 (105)
+.+...++|+... |-| ..+.+..++|+.++..+|...+.+++||++. ++++|+|+.|||+++.
T Consensus 56 ~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 56 DMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred HHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 3444555665533 334 4689999999999999999999999999974 6899999999998765
No 176
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.96 E-value=0.0021 Score=52.78 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=46.2
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
+++...++.++++|..+..++...+.. ++|++ +|+++|+||+.++.+++...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 566677899999999999999999988 88877 89999999999999998543
No 177
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.94 E-value=0.0012 Score=58.03 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=46.1
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+...|+++++.+|+..|..-+...|...+.|.+ .|.+.||||++||+.++-
T Consensus 155 ~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~ 206 (610)
T COG2905 155 KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVI 206 (610)
T ss_pred hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHH
Confidence 668899999999999999999999999666665 899999999999988874
No 178
>KOG1764|consensus
Probab=96.91 E-value=0.0023 Score=53.07 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=45.6
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeC-CeEEEEEehHHHHHhhccC
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAI-GRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~-GrLVGvVT~kDL~kaI~~~ 77 (105)
.++..++.||.++...+...+.++++|++. |+|+||||..|+..++-..
T Consensus 312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred cEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 489999999999999999999999999995 9999999999999988554
No 179
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.89 E-value=0.0018 Score=49.07 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=39.3
Q ss_pred ccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEe
Q psy6637 22 QCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVG 66 (105)
Q Consensus 22 ~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT 66 (105)
.+ +.+.+..+.+++++.+|..+|...++++++|++ .|+++|+|+
T Consensus 224 ~i-m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 224 DF-MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred Hh-CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 44 566788999999999999999999999999997 589999985
No 180
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.003 Score=53.78 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=48.8
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
+++.|+.|.+++..+.|..+|+..++-.++|++ +|+|+|+||..|+...++.-
T Consensus 202 m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 202 MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 566699999999999999999999999999998 78999999999998888655
No 181
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.45 E-value=0.0074 Score=50.20 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=47.5
Q ss_pred cCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 19 SFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 19 dl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
.+... +++...++.++++|..+...+...... ++|++ .|+++|+||+.+|.+++...
T Consensus 338 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAA-LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhh-hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 34455 567788999999999999999886655 88877 89999999999999998543
No 182
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.27 E-value=0.013 Score=48.47 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=51.2
Q ss_pred HHhcCcccCCccccC----C--CceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhhc
Q psy6637 12 EEMGQKVSFEQCHID----P--APFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 12 ~~l~~~idl~~~~id----~--sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI~ 75 (105)
+-+..-++|+...+. | .++.+..++++.++..++...|.+++||.+. ++++|||+.|||..++.
T Consensus 180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 344456666653322 2 4699999999999999999999999999985 48999999999987654
No 183
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.018 Score=48.91 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=57.8
Q ss_pred cCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccCchhhhcccccCCcCCc
Q psy6637 15 GQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLGEG 93 (105)
Q Consensus 15 ~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~~~~~~~~~~~~~~~e~ 93 (105)
.++.|+... . .-|+=|.+.|+|..-..-|+.-+-|.+.|++ +|.+.|+||..|+.+-|-+--.. .|+..-.|.
T Consensus 265 ~~k~d~~~~-a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftd----e~d~~~~ev 338 (423)
T COG4536 265 FTKEDILRA-A-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTD----EHDTLAKEV 338 (423)
T ss_pred ccHhHHHHH-h-cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccc----cCcccchhh
Confidence 344444433 2 5689999999999999999999999999998 99999999999999988544111 244455565
Q ss_pred chh
Q psy6637 94 QWN 96 (105)
Q Consensus 94 ~~~ 96 (105)
.|+
T Consensus 339 ~~q 341 (423)
T COG4536 339 IPQ 341 (423)
T ss_pred ccc
Confidence 553
No 184
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.034 Score=47.43 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=44.9
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhC-----CcEEEEee-CCeEEEEEehHHHHH
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVG-----VNHAYVTA-IGRLVGVVGLKEVRN 72 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lg-----lr~l~Vt~-~GrLVGvVT~kDL~k 72 (105)
.-+-.|+.--+++.+++|+.+|....+..+ .+++||++ .++|+|+||.++|..
T Consensus 133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~ 191 (451)
T COG2239 133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLT 191 (451)
T ss_pred hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhc
Confidence 334447888899999999999999999665 48899998 788999999999863
No 185
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.72 E-value=0.023 Score=47.11 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=41.9
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhc
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~ 75 (105)
+.....++.++|+|..+..++...+.- +.|++.|+++|+|++.++++++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 331 LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHALL 380 (382)
T ss_pred hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHHh
Confidence 344566889999999999998888754 66667799999999999999884
No 186
>KOG2550|consensus
Probab=94.87 E-value=0.017 Score=49.76 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=42.8
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee----CCeEEEEEehHHHHHh
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA----IGRLVGVVGLKEVRND 73 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~----~GrLVGvVT~kDL~ka 73 (105)
..|+.++|++++-.|..++...|+..++||+ .+||||+||.+|+.-.
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~ 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh
Confidence 4588899999999999999999999999997 5889999999998654
No 187
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.39 E-value=0.16 Score=42.87 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=47.4
Q ss_pred ccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhcc
Q psy6637 24 HIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 24 ~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~ 76 (105)
.+++.+.++..++++.......+.-+.-.+.|-++||++|+|++.++..|+..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~~p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAPCPVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCCCceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 35667789999999999999999999888888889999999999999999854
No 188
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=91.78 E-value=0.22 Score=34.55 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=29.4
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEeeC
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI 58 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~ 58 (105)
..++++.+++++.+|..+|...++++++|++.
T Consensus 86 ~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 86 CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 45789999999999999999999999999973
No 189
>KOG1764|consensus
Probab=91.56 E-value=0.32 Score=40.43 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=45.1
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
.-..+..++++..|..+|..-++.-++|++ .|++||++++.|+...+...
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~ 288 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG 288 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence 356788999999999999999999999998 89999999999998877665
No 190
>PRK11573 hypothetical protein; Provisional
Probab=90.33 E-value=1 Score=37.58 Aligned_cols=64 Identities=5% Similarity=0.021 Sum_probs=50.1
Q ss_pred HHHhcCcccCCccccC------CCceEEeccCCHHHHHHHHHHhCCcEEEEeeC--CeEEEEEehHHHHHhh
Q psy6637 11 EEEMGQKVSFEQCHID------PAPFQLVERTSLLKVHSIFSLVGVNHAYVTAI--GRLVGVVGLKEVRNDS 74 (105)
Q Consensus 11 ~~~l~~~idl~~~~id------~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~--GrLVGvVT~kDL~kaI 74 (105)
.+-+..-++|+...+. .--+.+..++++.++..++...|..++||.++ ..++|+|..||+.++.
T Consensus 175 ~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 175 QDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM 246 (413)
T ss_pred HHHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence 3344566777654332 12377888999999999999999999999874 6899999999998765
No 191
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=88.18 E-value=0.78 Score=39.17 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=42.7
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
..+..+.+++++.+-+.+-...|-.+-||.+ .-++|||||-||+..+-
T Consensus 198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~ 246 (432)
T COG4109 198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK 246 (432)
T ss_pred ccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC
Confidence 4467789999999999999999999999998 78999999999986654
No 192
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=86.84 E-value=2.3 Score=35.34 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=52.1
Q ss_pred HHHhcCcccCCccccC------CCceEEeccCCHHHHHHHHHHhCCcEEEEee--CCeEEEEEehHHHHHhhccC
Q psy6637 11 EEEMGQKVSFEQCHID------PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA--IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 11 ~~~l~~~idl~~~~id------~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~--~GrLVGvVT~kDL~kaI~~~ 77 (105)
.+-+...++|+..++. .--+.++.+.++.++...+...+..+.+|.+ ...++|+|..|||..+....
T Consensus 194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 3444566666664332 1236677789999999999999999999998 67899999999999988655
No 193
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=86.68 E-value=1.9 Score=35.94 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=37.9
Q ss_pred eccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 33 VERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 33 ~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
.+..+...+...+...+...++|++ .|+++|+|+.+++.++...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (400)
T PRK10070 291 TPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ 335 (400)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc
Confidence 3556888899999999999999997 7999999999999876543
No 194
>KOG2550|consensus
Probab=86.66 E-value=1.2 Score=38.64 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=43.9
Q ss_pred cCCCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhh
Q psy6637 25 IDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDS 74 (105)
Q Consensus 25 id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI 74 (105)
+-+.|++.....+|.++-.+++...--.++|++ +|.||-+|++.||.|.-
T Consensus 177 mt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 177 MTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred cccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 445668888899999999999999999888887 89999999999999843
No 195
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=85.67 E-value=3 Score=34.33 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=41.6
Q ss_pred CCceEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhcc
Q psy6637 27 PAPFQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHL 76 (105)
Q Consensus 27 ~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~ 76 (105)
..+....++.+...+...+...+...++|++ .++++|+|+.+++.++...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 300 (363)
T TIGR01186 250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK 300 (363)
T ss_pred ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc
Confidence 3445566677899999999999999999997 7999999999999876643
No 196
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=73.07 E-value=7.4 Score=32.17 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHh
Q psy6637 36 TSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRND 73 (105)
Q Consensus 36 tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~ka 73 (105)
++...+.+-|-.-+...++|++ +|+++|+||..+|...
T Consensus 270 ~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 270 FVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred hhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 3444577777888888999998 8999999999998753
No 197
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=65.11 E-value=10 Score=34.13 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 38 LLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 38 L~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
+..+..=.+.+|-.-+.|.++||+.|||-+||+.|
T Consensus 415 l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK 449 (681)
T COG2216 415 LDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcc
Confidence 44555666788889999999999999999999844
No 198
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=63.55 E-value=19 Score=29.53 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=41.5
Q ss_pred eEEeccCCHHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHHHHhhccC
Q psy6637 30 FQLVERTSLLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 30 ~qv~~~tsL~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL~kaI~~~ 77 (105)
+-|.+.-.|.....=|+.-.-+-+.|++ +|-+-|+||..|+++-|-+-
T Consensus 143 v~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 143 VVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred eecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence 3456667888888889999999999998 99999999999999988766
No 199
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=54.40 E-value=29 Score=22.70 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCcEEEEe---eCCeEEEEEehHH
Q psy6637 39 LKVHSIFSLVGVNHAYVT---AIGRLVGVVGLKE 69 (105)
Q Consensus 39 ~kv~~LF~~Lglr~l~Vt---~~GrLVGvVT~kD 69 (105)
...+.++...|++..+++ ..|+++|+++.-.
T Consensus 95 ~~~~~~~~~~~~~s~l~vPi~~~g~~~G~l~l~~ 128 (154)
T PF01590_consen 95 SAERPFLAEYGVRSYLCVPIISGGRLIGVLSLYR 128 (154)
T ss_dssp HHHHHHHHTTTESEEEEEEEEETTEEEEEEEEEE
T ss_pred cccccccccccCceeeEeeeecccCcEEEEEEEE
Confidence 345677788999987666 5999999997544
No 200
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=42.59 E-value=42 Score=20.46 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=25.1
Q ss_pred cccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEE
Q psy6637 23 CHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLV 62 (105)
Q Consensus 23 ~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLV 62 (105)
+.||.-++++.+.+|+..+...+. +....+-|.-+|++|
T Consensus 2 i~iNg~~~~~~~~~tv~~ll~~l~-~~~~~i~V~vNg~~v 40 (65)
T cd00565 2 ITVNGEPREVEEGATLAELLEELG-LDPRGVAVALNGEIV 40 (65)
T ss_pred EEECCeEEEcCCCCCHHHHHHHcC-CCCCcEEEEECCEEc
Confidence 347788899988888765554433 223356666678765
No 201
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=38.90 E-value=42 Score=21.70 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=26.6
Q ss_pred CCCceEEeccCCHHHHHHHHHHhCCcE---EEEeeCCeEEEEEehHH
Q psy6637 26 DPAPFQLVERTSLLKVHSIFSLVGVNH---AYVTAIGRLVGVVGLKE 69 (105)
Q Consensus 26 d~sP~qv~~~tsL~kv~~LF~~Lglr~---l~Vt~~GrLVGvVT~kD 69 (105)
...|+-+..+.+...........|++. +|+..+|+++|+++.-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~ 122 (148)
T PF13185_consen 76 TGEPIIINDDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYS 122 (148)
T ss_dssp HTS-EEESCCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEE
T ss_pred cCceEEEeCccccccchhhhccccCCEEEEEEEeECCEEEEEEEEee
Confidence 345555551122222257788888888 56667999999997543
No 202
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=37.53 E-value=38 Score=19.54 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=19.7
Q ss_pred EEeeCCeEEEEE-ehHHHHHhhccCchh
Q psy6637 54 YVTAIGRLVGVV-GLKEVRNDSHLSSVV 80 (105)
Q Consensus 54 ~Vt~~GrLVGvV-T~kDL~kaI~~~~~~ 80 (105)
|++-.|+-.||- +|.+..+.+.+.+..
T Consensus 3 YaV~~G~~~GIy~~W~~~~~~v~g~~ga 30 (44)
T PF01693_consen 3 YAVFNGRQPGIYTSWAECKKQVSGYPGA 30 (44)
T ss_dssp EEEECSSS-EEECCHHHHHHHCTT-TT-
T ss_pred EEEEeCCCCCeECCHHHHHHHhCCCCCc
Confidence 788899999999 788888887765443
No 203
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=35.82 E-value=38 Score=22.73 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=11.9
Q ss_pred EEEEe-eCCeEEEEEeh
Q psy6637 52 HAYVT-AIGRLVGVVGL 67 (105)
Q Consensus 52 ~l~Vt-~~GrLVGvVT~ 67 (105)
.+||- .+|+++|+|+-
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 46777 59999999974
No 204
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=33.00 E-value=70 Score=24.22 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637 35 RTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 35 ~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~ 77 (105)
+++...|..++...|++++.| ...|=+|..|+..++++.
T Consensus 135 ~~~~~~v~~~l~~~~i~~~~v----~~~~~~~~~~~~~~~~~~ 173 (233)
T cd01896 135 KLDEKTIKAILREYKIHNADV----LIREDITVDDLIDVIEGN 173 (233)
T ss_pred CCCHHHHHHHHHHhCeeeEEE----EEccCCCHHHHHHHHhCC
Confidence 456789999999999999999 455568999999999865
No 205
>KOG0475|consensus
Probab=32.20 E-value=75 Score=29.13 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHhCCcEEEEe---eCCeEEEEEehHHHHHhhccC
Q psy6637 36 TSLLKVHSIFSLVGVNHAYVT---AIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 36 tsL~kv~~LF~~Lglr~l~Vt---~~GrLVGvVT~kDL~kaI~~~ 77 (105)
+++.+.-.+++.-...--+|+ +..+++|.|.++|+.-+|..+
T Consensus 566 ~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~a 610 (696)
T KOG0475|consen 566 MTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNA 610 (696)
T ss_pred eeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhh
Confidence 688999999888666644555 368999999999998888754
No 206
>PF03849 Tfb2: Transcription factor Tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.44 E-value=27 Score=28.93 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637 41 VHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 41 v~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~ 77 (105)
+.++|..+..|.- +-.||.||+.-+++|+...
T Consensus 319 iL~lF~~~~~r~p-----nlvvg~iTr~Sv~~A~~~G 350 (366)
T PF03849_consen 319 ILSLFCELKYRFP-----NLVVGQITRESVRRALKNG 350 (366)
T ss_pred HHHHHHHHHhcCC-----CeEEEEEcHHHHHHHHHcC
Confidence 5889998886432 7899999999999999543
No 207
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=31.28 E-value=78 Score=28.58 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHH
Q psy6637 39 LKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72 (105)
Q Consensus 39 ~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~k 72 (105)
.+...-+...|.+.++|..+++++|+|..+|-.|
T Consensus 415 ~~~~~~~a~~G~r~l~va~~~~~lG~i~l~D~~R 448 (675)
T TIGR01497 415 DQAVDQVARQGGTPLVVCEDNRIYGVIYLKDIVK 448 (675)
T ss_pred HHHHHHHHhCCCeEEEEEECCEEEEEEEecccch
Confidence 3444556778999999999999999999999644
No 208
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=30.87 E-value=61 Score=23.31 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCcEEEEeeCCeEEEEEeh
Q psy6637 49 GVNHAYVTAIGRLVGVVGL 67 (105)
Q Consensus 49 glr~l~Vt~~GrLVGvVT~ 67 (105)
.....||.++||++|||++
T Consensus 105 ~~~~~PI~~~~~vIaVl~~ 123 (145)
T PF12282_consen 105 RQEVVPIRRNGRVIAVLIR 123 (145)
T ss_dssp EEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEE
Confidence 3467899999999999994
No 209
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=29.46 E-value=46 Score=19.08 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.3
Q ss_pred EEeeCCeEEEEEehHHHHHhhccCchh
Q psy6637 54 YVTAIGRLVGVVGLKEVRNDSHLSSVV 80 (105)
Q Consensus 54 ~Vt~~GrLVGvVT~kDL~kaI~~~~~~ 80 (105)
|+..+|+=.|=+|..+|++.+......
T Consensus 3 y~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 3 YYARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EEeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 667799999999999999988666443
No 210
>COG3519 Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.91 E-value=44 Score=30.24 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637 38 LLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 38 L~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~ 77 (105)
-..+-.+.+.|+++|+.-.+.|.+-|+...+|+++.....
T Consensus 484 ~~~~WRLIs~LslNyLsL~d~~~~~~~~~Lrd~L~L~~~~ 523 (621)
T COG3519 484 DALAWRLISQLSLNYLSLADNDALKGVPALRDLLALYDQR 523 (621)
T ss_pred chHHHHHHHHhccccchhccCCcccccHhHHHHHHhhccc
Confidence 3456889999999999999999999999999998877665
No 211
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=28.85 E-value=83 Score=19.46 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=37.1
Q ss_pred eEEeccCCHHHH----HHHHHH--hCCcEEEEeeCCeEEEEEehHHHHHhhccCch
Q psy6637 30 FQLVERTSLLKV----HSIFSL--VGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSV 79 (105)
Q Consensus 30 ~qv~~~tsL~kv----~~LF~~--Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~~~ 79 (105)
+.+....++... ...|.. -.+..-|.-+.|-+|=|.+..||..|+..+..
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 556666666554 445555 46677888889999999999999999976643
No 212
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=28.70 E-value=1.1e+02 Score=23.72 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCcEEEEee-CCeEEEEEehHHH
Q psy6637 38 LLKVHSIFSLVGVNHAYVTA-IGRLVGVVGLKEV 70 (105)
Q Consensus 38 L~kv~~LF~~Lglr~l~Vt~-~GrLVGvVT~kDL 70 (105)
+..+...+..++.+..++.. +|+++|.+....+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~ 201 (299)
T PF09924_consen 168 IMGALEHFDELGLRGFVARVADGKIVAFAIGSPL 201 (299)
T ss_dssp HHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEE
T ss_pred HhccccchhhcCceEEEEEECCCcEEEEEEEEEc
Confidence 44567778899999999999 9999999987654
No 213
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=28.29 E-value=1e+02 Score=20.50 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=22.1
Q ss_pred HHHHHHHHHHh----CCcEEEEee-CCeEEEEEehHHHH
Q psy6637 38 LLKVHSIFSLV----GVNHAYVTA-IGRLVGVVGLKEVR 71 (105)
Q Consensus 38 L~kv~~LF~~L----glr~l~Vt~-~GrLVGvVT~kDL~ 71 (105)
.......+..+ +-....|.. +|++||+++.+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~ 72 (155)
T PF13420_consen 34 EESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDID 72 (155)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESS
T ss_pred HHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeee
Confidence 33444444443 555566666 99999999988653
No 214
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=28.18 E-value=61 Score=23.92 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=17.4
Q ss_pred HhCCcEEEEeeCCeEEEEEehH
Q psy6637 47 LVGVNHAYVTAIGRLVGVVGLK 68 (105)
Q Consensus 47 ~Lglr~l~Vt~~GrLVGvVT~k 68 (105)
..+=--+|-.++.++||||-|.
T Consensus 97 ~~~kGVVfYLrd~~VvGillWN 118 (133)
T PF14721_consen 97 DYGKGVVFYLRDDRVVGILLWN 118 (133)
T ss_dssp G-SEEEEEEEETTEEEEEEEES
T ss_pred ccCceEEEEEcCCeEEEEEEee
Confidence 3444568888999999999986
No 215
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=28.06 E-value=57 Score=23.82 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.9
Q ss_pred eCCeEEEEEehHHHHHhhccC
Q psy6637 57 AIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 57 ~~GrLVGvVT~kDL~kaI~~~ 77 (105)
++|+|-|-||.+|+.+++...
T Consensus 85 e~gklfGSVt~~~I~~~l~~~ 105 (148)
T TIGR00158 85 DEGKLFGSITTKQIADALKAA 105 (148)
T ss_pred CCCeEEEeECHHHHHHHHHHc
Confidence 489999999999999888443
No 216
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=27.94 E-value=1.2e+02 Score=22.71 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=32.7
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEE
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVV 65 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvV 65 (105)
+|.+.---++..+..++..|++...+|+.+|..+--.
T Consensus 38 ~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 38 KVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNG 74 (264)
T ss_pred EEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecC
Confidence 7788888899999999999999998899999888654
No 217
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=27.64 E-value=89 Score=19.16 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=16.6
Q ss_pred EEEee-CCeEEEEE----ehHHHHHhhccC
Q psy6637 53 AYVTA-IGRLVGVV----GLKEVRNDSHLS 77 (105)
Q Consensus 53 l~Vt~-~GrLVGvV----T~kDL~kaI~~~ 77 (105)
.+|.+ +|+++||+ +...|.+.+...
T Consensus 19 ~pi~~~~g~~~Gvv~~di~l~~l~~~i~~~ 48 (81)
T PF02743_consen 19 VPIYDDDGKIIGVVGIDISLDQLSEIISNI 48 (81)
T ss_dssp EEEEETTTEEEEEEEEEEEHHHHHHHHTTS
T ss_pred EEEECCCCCEEEEEEEEeccceeeeEEEee
Confidence 35556 89999985 456666666543
No 218
>KOG0476|consensus
Probab=27.23 E-value=84 Score=29.64 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=46.7
Q ss_pred CCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEee---CCeEEEEEehHHHHHhhccC
Q psy6637 20 FEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTA---IGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 20 l~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~---~GrLVGvVT~kDL~kaI~~~ 77 (105)
.+.+ |......+..+||..+...+...-.+|..++++ .--|+|.|+++.|.+.+..+
T Consensus 590 VE~i-MV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 590 VEHI-MVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH 649 (931)
T ss_pred eeee-ccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence 3445 556677889999999999998888789988886 56799999999998887664
No 219
>CHL00160 rpl9 ribosomal protein L9; Provisional
Probab=27.10 E-value=45 Score=24.63 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=17.5
Q ss_pred eCCeEEEEEehHHHHHhhc
Q psy6637 57 AIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 57 ~~GrLVGvVT~kDL~kaI~ 75 (105)
++|+|-|-||-+|+.+++.
T Consensus 91 e~gklfGSVt~~dIa~~l~ 109 (153)
T CHL00160 91 ENNQIFGSVTEKEISQIIK 109 (153)
T ss_pred CCCeEEcccCHHHHHHHHH
Confidence 6899999999999998884
No 220
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=26.77 E-value=1.3e+02 Score=21.78 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=30.4
Q ss_pred CceEEeccCCHHHHHHHHHHhCCc-EEEEeeCCeEEE
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVN-HAYVTAIGRLVG 63 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr-~l~Vt~~GrLVG 63 (105)
-+|.+.-.-+...+..+++.+|+. .-+++.+|-+|-
T Consensus 33 i~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~ 69 (221)
T TIGR02463 33 IPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIH 69 (221)
T ss_pred CeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEE
Confidence 378888888999999999999998 667888888774
No 221
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=26.65 E-value=1.2e+02 Score=24.90 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=43.2
Q ss_pred cccCCCceEEec----cCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccCchhhhcccccCCcCCcchhhh
Q psy6637 23 CHIDPAPFQLVE----RTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRSITMADGLGEGQWNAQ 98 (105)
Q Consensus 23 ~~id~sP~qv~~----~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~~~~~~~~~~~~~~~e~~~~~~ 98 (105)
+.+|-..|.++- ...|.+....|...|....+|+.+|.+ .|+++.+....-. .-+-++.+|.+|+
T Consensus 78 ~~pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl------pdv~~~L~~~dql---~~sLdA~~~~~~~-- 146 (296)
T COG0731 78 TEPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL------PDVLEELKLPDQL---YVSLDAPDEKTFR-- 146 (296)
T ss_pred CCCCEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCCh------HHHHHHhccCCEE---EEEeccCCHHHHH--
Confidence 444444444443 346788899999999546666666777 8888888644222 2344556676663
Q ss_pred hhhcCC
Q psy6637 99 EKINKP 104 (105)
Q Consensus 99 ~~~~~~ 104 (105)
+||.|
T Consensus 147 -~InRP 151 (296)
T COG0731 147 -RINRP 151 (296)
T ss_pred -HhcCC
Confidence 45544
No 222
>PF05504 Spore_GerAC: Spore germination B3/ GerAC like, C-terminal ; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response [].; GO: 0009847 spore germination, 0016020 membrane; PDB: 3N54_B.
Probab=26.62 E-value=1e+02 Score=21.61 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=15.9
Q ss_pred EEEEeeCCeEEEEEehHHHH
Q psy6637 52 HAYVTAIGRLVGVVGLKEVR 71 (105)
Q Consensus 52 ~l~Vt~~GrLVGvVT~kDL~ 71 (105)
-+.|-+++|+||.++.+|.+
T Consensus 3 G~avfk~~klvg~l~~~e~~ 22 (171)
T PF05504_consen 3 GAAVFKNDKLVGWLNPEETR 22 (171)
T ss_dssp EEEEEETTEEEEEE-HHHHH
T ss_pred EEEEEECCEEEEEECHHHHH
Confidence 35677899999999999974
No 223
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=26.28 E-value=66 Score=24.44 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.3
Q ss_pred EEEEeeCCeEEEEEeh
Q psy6637 52 HAYVTAIGRLVGVVGL 67 (105)
Q Consensus 52 ~l~Vt~~GrLVGvVT~ 67 (105)
.+||..+|+++||+-.
T Consensus 118 VvPi~~~g~~iGvlDi 133 (163)
T COG1956 118 VVPIFKDGKLIGVLDI 133 (163)
T ss_pred EEEEEECCEEEEEEec
Confidence 4688889999999853
No 224
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=26.12 E-value=1.1e+02 Score=20.19 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.8
Q ss_pred eCCeEEEEEehHHHHHhhccC
Q psy6637 57 AIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 57 ~~GrLVGvVT~kDL~kaI~~~ 77 (105)
++|+|-|=||.+|+.+++...
T Consensus 24 ~~gklfGSVt~~dIa~~l~~~ 44 (87)
T PF03948_consen 24 ENGKLFGSVTSKDIAKALKEQ 44 (87)
T ss_dssp SCSSBSSEBSHHHHHHHHHHC
T ss_pred CCcceecCcCHHHHHHHHHHh
Confidence 479999999999999998766
No 225
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=25.94 E-value=88 Score=20.41 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=16.9
Q ss_pred cEEEEee-CCeEEEEEehHHHHHhhc
Q psy6637 51 NHAYVTA-IGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 51 r~l~Vt~-~GrLVGvVT~kDL~kaI~ 75 (105)
+.+.|++ .|..+|+++..+-++...
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~ 38 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAK 38 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHH
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHH
Confidence 4555555 899999999999665443
No 226
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=25.93 E-value=1e+02 Score=18.66 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=25.9
Q ss_pred ccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEE
Q psy6637 24 HIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLV 62 (105)
Q Consensus 24 ~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLV 62 (105)
.+|-.++.+.+.+|+..+...+.. ....+.|.-+|++|
T Consensus 2 ~iNg~~~~~~~~~tv~~ll~~l~~-~~~~v~v~vN~~iv 39 (64)
T TIGR01683 2 TVNGEPVEVEDGLTLAALLESLGL-DPRRVAVAVNGEIV 39 (64)
T ss_pred EECCeEEEcCCCCcHHHHHHHcCC-CCCeEEEEECCEEc
Confidence 367778888888887766655432 24566677788876
No 227
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=25.42 E-value=1e+02 Score=18.54 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.3
Q ss_pred EEEEeeCCeEEEEEeh
Q psy6637 52 HAYVTAIGRLVGVVGL 67 (105)
Q Consensus 52 ~l~Vt~~GrLVGvVT~ 67 (105)
+..+.++|++||.+..
T Consensus 5 ~~~~~~~~~ivG~~~~ 20 (79)
T PF13508_consen 5 FFVAEDDGEIVGFIRL 20 (79)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEEEECCEEEEEEEE
Confidence 3445569999999986
No 228
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=25.32 E-value=90 Score=18.77 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=11.7
Q ss_pred EEEeeCCeEEEEEehH
Q psy6637 53 AYVTAIGRLVGVVGLK 68 (105)
Q Consensus 53 l~Vt~~GrLVGvVT~k 68 (105)
+++...|+++|+++..
T Consensus 97 ~Pl~~~~~~~G~l~~~ 112 (149)
T smart00065 97 VPLVADGELVGVLALH 112 (149)
T ss_pred eeeeecCEEEEEEEEE
Confidence 3444689999998754
No 229
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=25.18 E-value=1e+02 Score=21.76 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=21.6
Q ss_pred ccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEe
Q psy6637 34 ERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVG 66 (105)
Q Consensus 34 ~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT 66 (105)
..+|+.+..++|..||+..++-.+.|-=-+++.
T Consensus 114 ~g~tl~ela~~l~~lG~~~AinLDGGgSs~l~~ 146 (170)
T PF09992_consen 114 AGMTLDELAQLLKSLGCVDAINLDGGGSSTLVV 146 (170)
T ss_dssp --B-HHHHHHHHHHHT-SEEEE---GGG--EEE
T ss_pred CCCCHHHHHHHHHHcCcCeEEEecCCcceEEEE
Confidence 358999999999999999999999887677766
No 230
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.16 E-value=82 Score=21.10 Aligned_cols=22 Identities=5% Similarity=0.280 Sum_probs=18.5
Q ss_pred eEEeccCCHHHHHHHHHHhCCc
Q psy6637 30 FQLVERTSLLKVHSIFSLVGVN 51 (105)
Q Consensus 30 ~qv~~~tsL~kv~~LF~~Lglr 51 (105)
+++.+..|+.+-..+|+.||++
T Consensus 3 y~v~D~VP~~~wk~F~R~LGLs 24 (77)
T cd08815 3 YAVMDAVPARRWKEFVRTLGLR 24 (77)
T ss_pred eeeeccCChHHHHHHHHHcCCc
Confidence 4677888999999999999974
No 231
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=24.97 E-value=2.2e+02 Score=20.53 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCcEEEE----eeCCeEEEEEehHHHHHhhccC
Q psy6637 38 LLKVHSIFSLVGVNHAYV----TAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 38 L~kv~~LF~~Lglr~l~V----t~~GrLVGvVT~kDL~kaI~~~ 77 (105)
...+..+-..|.--.+-+ -++|+|-|-||.+|+.+++...
T Consensus 62 ~~~a~~l~~~l~~~~l~i~~k~g~~gklfGsVt~~~I~~~l~~~ 105 (147)
T PRK00137 62 LAEAEALAEKLEGLTVTIKAKAGEDGKLFGSVTTKDIAEALKKQ 105 (147)
T ss_pred HHHHHHHHHHhhCCEEEEEEEcCCCCeEEeeeCHHHHHHHHHHc
Confidence 334444444444222222 2489999999999999888543
No 232
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=24.93 E-value=1.3e+02 Score=18.09 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=25.0
Q ss_pred cccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEE
Q psy6637 23 CHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLV 62 (105)
Q Consensus 23 ~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLV 62 (105)
+.+|-.|+++.+.+|+..+...+.. ...++-|.-+|.++
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~l~~-~~~~vav~vNg~iv 41 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAREGL-AGRRVAVEVNGEIV 41 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHhcCC-CCCeEEEEECCeEe
Confidence 3477788999988887776655433 23455555566544
No 233
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=24.76 E-value=91 Score=28.18 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCcEEEEeeCCeEEEEEehHHH
Q psy6637 40 KVHSIFSLVGVNHAYVTAIGRLVGVVGLKEV 70 (105)
Q Consensus 40 kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL 70 (105)
+...-+...|.+.++|..+++++|+|..+|-
T Consensus 415 ~~~~~~a~~G~~~l~va~~~~~lG~i~l~D~ 445 (679)
T PRK01122 415 AAVDEVARKGGTPLVVAEDNRVLGVIYLKDI 445 (679)
T ss_pred HHHHHHHhCCCcEEEEEECCeEEEEEEEecc
Confidence 3444567789999999999999999998775
No 234
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=24.69 E-value=91 Score=18.66 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=24.4
Q ss_pred cccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEE
Q psy6637 23 CHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLV 62 (105)
Q Consensus 23 ~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLV 62 (105)
+.+|-.++++.+.+|+..+...+... ..+.|.-+|+++
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~l~~~--~~~~v~vN~~~v 40 (65)
T PRK06944 3 IQLNQQTLSLPDGATVADALAAYGAR--PPFAVAVNGDFV 40 (65)
T ss_pred EEECCEEEECCCCCcHHHHHHhhCCC--CCeEEEECCEEc
Confidence 34777888998888877666544331 334445577774
No 235
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=24.62 E-value=11 Score=32.71 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHH
Q psy6637 34 ERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKE 69 (105)
Q Consensus 34 ~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kD 69 (105)
.+....++-+++.-+.++++.||...+++|++|.|-
T Consensus 72 KQ~~~~kiG~i~tIielQ~vlVt~~t~~lgvLttk~ 107 (467)
T PHA02996 72 KQRRTYKIGKLLTIIELQSVLVTTYTDVLGVLTTKA 107 (467)
T ss_pred hccchhhhhhhheeeeeheehhhhHhhhhhhhccCC
Confidence 456667889999999999999999999999999854
No 236
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=24.16 E-value=1.5e+02 Score=17.99 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=27.4
Q ss_pred CCceEEeccCCHH-HHHHHHHHhCCcEEEEeeCCeEEEE
Q psy6637 27 PAPFQLVERTSLL-KVHSIFSLVGVNHAYVTAIGRLVGV 64 (105)
Q Consensus 27 ~sP~qv~~~tsL~-kv~~LF~~Lglr~l~Vt~~GrLVGv 64 (105)
-++..+...+|.. -|+.+...++-+.++..-+|+++|+
T Consensus 8 G~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl 46 (60)
T PF02824_consen 8 GSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDL 46 (60)
T ss_dssp SCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEET
T ss_pred CCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCC
Confidence 3445566655544 4578888888888888889999874
No 237
>PF11102 Cap_synth_GfcB: Group 4 capsule polysaccharide formation lipoprotein gfcB; InterPro: IPR021308 Some members in this bacterial family of proteins are annotated as YjbF however the function is unknown. ; PDB: 2IN5_B.
Probab=23.88 E-value=73 Score=23.81 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=17.5
Q ss_pred CcEEEEeeCCeEEEEEehH-HHHH
Q psy6637 50 VNHAYVTAIGRLVGVVGLK-EVRN 72 (105)
Q Consensus 50 lr~l~Vt~~GrLVGvVT~k-DL~k 72 (105)
=+..+|+++|+|||-.... ||..
T Consensus 72 D~~~lvt~~Grlv~T~GL~~dL~~ 95 (200)
T PF11102_consen 72 DGAMLVTRNGRLVKTRGLGNDLMS 95 (200)
T ss_dssp TTEEEEEETTEEEEEESSSS-EEE
T ss_pred CCeEEEEeCCEEEEEcCCCcChhh
Confidence 3678999999999988877 4433
No 238
>KOG3471|consensus
Probab=23.77 E-value=39 Score=29.46 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=26.0
Q ss_pred HHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccC
Q psy6637 41 VHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLS 77 (105)
Q Consensus 41 v~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~ 77 (105)
|..||..+-.|.- .-+||+||+.-+++|+...
T Consensus 328 vi~LF~~l~~rf~-----nlvvG~iTreSVr~Al~~G 359 (465)
T KOG3471|consen 328 VIALFTELTYRFP-----NLVVGVITRESVRRALDNG 359 (465)
T ss_pred HHHHHHHHHhhcc-----ccceeeeeHHHHHHHHhcC
Confidence 4789988876653 6689999999999999655
No 239
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=23.37 E-value=1e+02 Score=19.81 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=12.6
Q ss_pred EEEEeeCCeEEEEEehHH
Q psy6637 52 HAYVTAIGRLVGVVGLKE 69 (105)
Q Consensus 52 ~l~Vt~~GrLVGvVT~kD 69 (105)
..|. .+|+|+|+++...
T Consensus 36 ~~y~-~~g~lva~~~vn~ 52 (85)
T PF14759_consen 36 AFYL-RDGRLVAAVSVNR 52 (85)
T ss_dssp EEEE-ETTEEEEEEEES-
T ss_pred EEEE-cCCEEEEEEecCC
Confidence 3444 8999999999654
No 240
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=22.78 E-value=2e+02 Score=17.91 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehH
Q psy6637 36 TSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLK 68 (105)
Q Consensus 36 tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~k 68 (105)
.+......++..-......+..+|++||.+..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 30 YSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp SSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred cCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 556666677766443444455699999999864
No 241
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=22.74 E-value=70 Score=20.00 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=12.3
Q ss_pred ChHHHHhHHHHHhcC
Q psy6637 2 SPEDQKKWEEEEMGQ 16 (105)
Q Consensus 2 ~~~e~~~we~~~l~~ 16 (105)
||+||..|-++.--+
T Consensus 19 t~eeI~~W~eERrk~ 33 (56)
T PF10453_consen 19 TPEEIAKWIEERRKN 33 (56)
T ss_pred CHHHHHHHHHHHHHc
Confidence 799999999887544
No 242
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=22.65 E-value=61 Score=19.71 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=9.9
Q ss_pred CChHHHHhHHHHHhcCc
Q psy6637 1 MSPEDQKKWEEEEMGQK 17 (105)
Q Consensus 1 ~~~~e~~~we~~~l~~~ 17 (105)
||++||.+ +.++|...
T Consensus 15 MS~eEI~~-er~eL~~~ 30 (49)
T PF08621_consen 15 MSPEEIEE-EREELLES 30 (49)
T ss_pred CCHHHHHH-HHHHHHHh
Confidence 78888877 33444433
No 243
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=22.20 E-value=69 Score=20.20 Aligned_cols=10 Identities=40% Similarity=0.787 Sum_probs=7.1
Q ss_pred EeeCCeEEEE
Q psy6637 55 VTAIGRLVGV 64 (105)
Q Consensus 55 Vt~~GrLVGv 64 (105)
+..+|++|||
T Consensus 111 ~~~~G~vvGi 120 (120)
T PF13365_consen 111 FDSDGRVVGI 120 (120)
T ss_dssp EETTSEEEEE
T ss_pred ECCCCEEEeC
Confidence 3458888886
No 244
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=21.84 E-value=1.4e+02 Score=20.29 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=29.4
Q ss_pred HHHHHHHHh--CCcEEEEeeCCeEEEEEehHHHHHhhccCch
Q psy6637 40 KVHSIFSLV--GVNHAYVTAIGRLVGVVGLKEVRNDSHLSSV 79 (105)
Q Consensus 40 kv~~LF~~L--glr~l~Vt~~GrLVGvVT~kDL~kaI~~~~~ 79 (105)
+...||.+- .+---|+-++|-+|-+.+-+||+++...++.
T Consensus 28 kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~~~~ 69 (82)
T cd06397 28 KLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRLSHR 69 (82)
T ss_pred HHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence 345566554 3445567789999999999999999976543
No 245
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=21.80 E-value=1.7e+02 Score=21.88 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=29.5
Q ss_pred CceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEE
Q psy6637 28 APFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLV 62 (105)
Q Consensus 28 sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLV 62 (105)
.+|.+.-.-+...+..++..+|+..-+|+.+|-+|
T Consensus 33 ~~~~~~TgR~~~~~~~~~~~~~~~~~~I~~NGa~i 67 (256)
T TIGR01486 33 IPVIPCTSKTAAEVEYLRKELGLEDPFIVENGGAI 67 (256)
T ss_pred CeEEEEcCCCHHHHHHHHHHcCCCCcEEEcCCeEE
Confidence 36778888889999999999999877888888766
No 246
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=21.71 E-value=2.1e+02 Score=19.92 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=21.1
Q ss_pred HHHHHHHhCCcEEEEeeCCeEEEEEeh
Q psy6637 41 VHSIFSLVGVNHAYVTAIGRLVGVVGL 67 (105)
Q Consensus 41 v~~LF~~Lglr~l~Vt~~GrLVGvVT~ 67 (105)
...-|.....=.+.+.++|+.+|.|++
T Consensus 74 L~~r~gv~~~PaLvf~R~g~~lG~i~g 100 (107)
T PF07449_consen 74 LAARFGVRRWPALVFFRDGRYLGAIEG 100 (107)
T ss_dssp HHHHHT-TSSSEEEEEETTEEEEEEES
T ss_pred HHHHhCCccCCeEEEEECCEEEEEecC
Confidence 355666777778999999999999974
No 247
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=21.33 E-value=88 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=18.5
Q ss_pred hCCcEEEEeeCCeEEEEEehHHH
Q psy6637 48 VGVNHAYVTAIGRLVGVVGLKEV 70 (105)
Q Consensus 48 Lglr~l~Vt~~GrLVGvVT~kDL 70 (105)
++..+++|.+.|+++|||-|.+.
T Consensus 192 ~~~~Nilv~~~~~~~gviDWe~a 214 (276)
T cd05152 192 LHPGHILIDEDARVTGLIDWTEA 214 (276)
T ss_pred CCCCcEEEeCCCCEEEEECcHhc
Confidence 44667888766999999999874
No 248
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=21.00 E-value=1.9e+02 Score=16.85 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=20.8
Q ss_pred CCcEEEEe--eCCeEEEEEehHHHHHhhc
Q psy6637 49 GVNHAYVT--AIGRLVGVVGLKEVRNDSH 75 (105)
Q Consensus 49 glr~l~Vt--~~GrLVGvVT~kDL~kaI~ 75 (105)
|.+.+|+. ++|+.+.-.+-.|+..++.
T Consensus 48 ~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 48 GNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 77888877 5788888888888877653
No 249
>KOG0119|consensus
Probab=20.91 E-value=86 Score=27.98 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=53.8
Q ss_pred HHHHhHHHHHhcCcccCCccccCCCceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEEEEEehHHHHHhhccCchhhhc
Q psy6637 4 EDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRNDSHLSSVVIRS 83 (105)
Q Consensus 4 ~e~~~we~~~l~~~idl~~~~id~sP~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLVGvVT~kDL~kaI~~~~~~~~~ 83 (105)
+|+.+|.++.|..--+|..- -|..|-.+. +.-+.-=..=|-..++=-+++-.+|. |.|.|.+ ..++..+||+
T Consensus 110 ~er~e~I~~~lk~nP~fkpP-~DYk~p~~~-~~Kv~IPvke~Pd~NFvGLiiGPRG~-----TqK~lE~-etgAKI~IRG 181 (554)
T KOG0119|consen 110 DERHEIIEEILKLNPGFKPP-ADYKPPAKL-HDKVYIPVKEFPDINFVGLIIGPRGN-----TQKRLER-ETGAKIAIRG 181 (554)
T ss_pred HHHHHHHHHHHHhCcCCCCC-cccCccccc-ccceecchhhcCCcceeEEEecCCcc-----HHHHHHH-HhCCeEEEec
Confidence 57888999999988888865 677766422 22222222333333433333333333 7788755 4566666666
Q ss_pred -------------ccccCCcCCcch-----hhhhhhcCC
Q psy6637 84 -------------ITMADGLGEGQW-----NAQEKINKP 104 (105)
Q Consensus 84 -------------~~~~~~~~e~~~-----~~~~~~~~~ 104 (105)
..+..+..|..- +.||||+|-
T Consensus 182 kgSvkEgk~~~~d~~~~~~~~epLH~~Isadt~eki~~A 220 (554)
T KOG0119|consen 182 KGSVKEGKGRSDDLSYIPKENEPLHCLISADTQEKIKKA 220 (554)
T ss_pred cccccccccCCcccccccccccceeEEEecchHHHHHHH
Confidence 344444444433 888888764
No 250
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=20.66 E-value=1.6e+02 Score=18.00 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=36.1
Q ss_pred ceEEe-ccCCHHHH----HHHHHHh--CCcEEEEeeCCeEEEEEehHHHHHhhccCc
Q psy6637 29 PFQLV-ERTSLLKV----HSIFSLV--GVNHAYVTAIGRLVGVVGLKEVRNDSHLSS 78 (105)
Q Consensus 29 P~qv~-~~tsL~kv----~~LF~~L--glr~l~Vt~~GrLVGvVT~kDL~kaI~~~~ 78 (105)
.|++. ..++.... ...|... .+..-|.-+.|-+|=+-|..||..|++.+.
T Consensus 13 ~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 13 RFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHh
Confidence 45566 66666554 4455554 556667777999999999999999997653
No 251
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=20.37 E-value=1.6e+02 Score=21.27 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=27.5
Q ss_pred ceEEeccCCHHHHHHHHHHhCCcEEEEeeCCeEE
Q psy6637 29 PFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLV 62 (105)
Q Consensus 29 P~qv~~~tsL~kv~~LF~~Lglr~l~Vt~~GrLV 62 (105)
+|.+.---+...+..++..+++...+|..+|-++
T Consensus 36 ~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i 69 (215)
T TIGR01487 36 PVSLVTGNTVPFARALAVLIGTSGPVVAENGGVI 69 (215)
T ss_pred EEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEE
Confidence 6677777778888889999999877888888776
No 252
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=20.30 E-value=63 Score=16.72 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.8
Q ss_pred EEEehHHHHHhhc
Q psy6637 63 GVVGLKEVRNDSH 75 (105)
Q Consensus 63 GvVT~kDL~kaI~ 75 (105)
|.||..|+.+++.
T Consensus 15 G~I~~~el~~~l~ 27 (31)
T PF13405_consen 15 GFIDFEELRAILR 27 (31)
T ss_dssp SEEEHHHHHHHHH
T ss_pred CcCcHHHHHHHHH
Confidence 5899999988874
Done!