RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6637
         (105 letters)



>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
           CBS domains, ION CH regulatory subunit, transport
           protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
          Length = 250

 Score = 97.9 bits (242), Expect = 1e-26
 Identities = 37/71 (52%), Positives = 54/71 (76%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           ++ E+  +WE+ E    V+FE C ID +PFQLVE TSL K H++FSL+G++ AYVT++G+
Sbjct: 171 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK 230

Query: 61  LVGVVGLKEVR 71
           LVGVV L E++
Sbjct: 231 LVGVVALAEIQ 241


>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
           merolae}
          Length = 632

 Score = 70.2 bits (172), Expect = 9e-16
 Identities = 15/70 (21%), Positives = 31/70 (44%)

Query: 3   PEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLV 62
               K      + +  S      D +P  +   + + ++H +F ++  +  YVT  G+LV
Sbjct: 552 EHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLV 611

Query: 63  GVVGLKEVRN 72
           G+V  ++V  
Sbjct: 612 GIVEREDVAY 621


>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
           (CBS) domains containing protein, transport protein;
           1.60A {Homo sapiens}
          Length = 164

 Score = 59.3 bits (143), Expect = 1e-12
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 9   WEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLK 68
              ++  Q +    C  +P    L   T+L +  ++F L+ +   +VT+ GR VG V   
Sbjct: 80  PGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWV 139

Query: 69  EVR 71
           E++
Sbjct: 140 EMK 142


>2j9l_A Chloride channel protein 5; ION channel, ION transport,
           voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
           d.37.1.1 PDB: 2ja3_A*
          Length = 185

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           +   +            +      +D +PF + + T +  V  IF  +G+    VT  GR
Sbjct: 91  IYFTEHSPPLPPYTPPTLKLRNI-LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGR 149

Query: 61  LVGVVGLKEV 70
           L+G++  K+V
Sbjct: 150 LLGIITKKDV 159


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
          cytoplasmic vesicle, membrane, Ca structural protein;
          7.94A {Bos taurus}
          Length = 190

 Score = 26.7 bits (58), Expect = 1.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 3  PEDQKKWEEEE 13
          PE  +KW EE+
Sbjct: 84 PESIRKWREEQ 94


>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
          PSI-2, protein structure initiative; HET: EPE; 1.66A
          {Chlorobium tepidum tls}
          Length = 128

 Score = 24.7 bits (54), Expect = 4.7
 Identities = 8/37 (21%), Positives = 12/37 (32%)

Query: 36 TSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEVRN 72
           S        +  G   A V    R +G+V L  +  
Sbjct: 22 GSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE 58


>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group
          box domain, helix-turn-helix, structural genomics,
          NPPSFA; NMR {Homo sapiens}
          Length = 81

 Score = 24.4 bits (52), Expect = 5.5
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 1  MSPEDQKKWEEEEMGQKVSFE 21
          +S E++K W  +  G+  S  
Sbjct: 48 LSTEERKVWANKAKGETASEG 68


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,584,813
Number of extensions: 80104
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 13
Length of query: 105
Length of database: 6,701,793
Length adjustment: 70
Effective length of query: 35
Effective length of database: 4,747,323
Effective search space: 166156305
Effective search space used: 166156305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)