RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6637
         (105 letters)



>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
           CBS tandem {Marbled electric ray (Torpedo marmorata)
           [TaxId: 7788]}
          Length = 160

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 37/70 (52%), Positives = 53/70 (75%)

Query: 1   MSPEDQKKWEEEEMGQKVSFEQCHIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGR 60
           ++ E+  +WE+ E    V+FE C ID +PFQLVE TSL K H++FSL+G++ AYVT++G+
Sbjct: 85  LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK 144

Query: 61  LVGVVGLKEV 70
           LVGVV L E+
Sbjct: 145 LVGVVALAEI 154


>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 169

 Score = 26.0 bits (56), Expect = 0.83
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 24  HIDPAPFQLVERTSLLKVHSIFSLVGVNHAYVTAIGRLVGVVGLKEV 70
            +D +PF + + T +  V  IF  +G+    VT  GRL+G++  K+V
Sbjct: 105 ILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDV 151


>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 265

 Score = 23.4 bits (50), Expect = 8.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 89  GLGEGQWNAQEKI 101
           GL   +W A EK+
Sbjct: 25  GLAAQEWVACEKV 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 383,515
Number of extensions: 14385
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)