BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6638
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 25 VLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GN 83
V R+D+G A N G + T++L V + P+ P+ +++++ S S+ ++WT P S G
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGG 227
Query: 84 TAITQYIIQY-KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
+ IT YI++ ++ E W L+ + +T T+ L T YQ R++AEN G+S+
Sbjct: 228 SKITNYIVEKCATTAERW----LR-VGQARETRYTVINLFGKTSYQFRVIAENKFGLSK 281
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXX 209
T E AP+G P +VT P V + + WKAP +E NGV+ GY +GY+
Sbjct: 10 TEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPKKELQNGVIRGYQIGYR--ENSPGSNGQ 65
Query: 210 YTLKSVELDNQYEGEL-RIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
Y++ VE+ + E+ + L + +Y +VV+ +N G GP S A T E
Sbjct: 66 YSI--VEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 116
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 59 PKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEEMWPTQ--PLKIIVPGSQT 114
P ++ + +S+S+Q++W AP N I Y I Y+ + Q +++ G
Sbjct: 19 PMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSE 78
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN 156
TL L QY V + A N G + +E+ A+TLE P+
Sbjct: 79 VYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
APKN+ ++E + SL++SWTAP + A ++IQY+ SE++ + + + VPGS+ S
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP---DAAFDSFMIQYQESEKV--GEAINLTVPGSERSYD 58
Query: 118 LQPLLPATQYQVRL 131
L L P T+Y V +
Sbjct: 59 LTGLKPGTEYTVSI 72
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 49 QLLVQETPEAPKN--IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK 106
L V++ P AP++ ++ R++ ++WT P+ GN+ + +YI++ + W T L
Sbjct: 11 HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPW-TVLLA 69
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
+ P + TS T++ L+PA YQ RL A N +G + + + +L E+
Sbjct: 70 SVDPKA-TSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
L IA D G +C ATN+ GT L + + P +P ++I E S + ++S+ P
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 80 YS-GNTAITQYIIQYKS-SEEMWPTQPLKII-VPGSQTSATLQPLLPATQYQVRLLAENP 136
S G I Y + K + E+W KI+ G QT L L P T Y++R+ A N
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIW-----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274
Query: 137 LGMSE 141
G +
Sbjct: 275 KGQGD 279
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
L IA D G +C ATN+ GT L + + P +P ++I E S + ++S+ P
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 80 YS-GNTAITQYIIQYKS-SEEMWPTQPLKII-VPGSQTSATLQPLLPATQYQVRLLAENP 136
S G I Y + K + E+W KI+ G QT L L P T Y++R+ A N
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIW-----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274
Query: 137 LGMSE 141
G +
Sbjct: 275 KGQGD 279
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 33 LSCLATNYHGTAEMTIQLLVQETP---EAPKNIRITEESSRSLQISWTAPYSGNTAITQY 89
+ A N G + + + Q P +P +I S +S ++S T G I +Y
Sbjct: 267 IRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEY 326
Query: 90 IIQYKS--SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
I++Y+S E+ W L+ V G++ L+ L Y+V++ A N LG SE
Sbjct: 327 IVKYRSKDKEDQW----LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSE 376
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE---MWPTQPLKII 108
V + P P ++ +T++ +S+Q+SWT N+ IT++II+Y+ + +W Q
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQ---TE 69
Query: 109 VPGSQTSATLQPLLPATQYQVRLLAENPLGMS 140
V G+QT+A L L P Y R++A N +G S
Sbjct: 70 VSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKS 100
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 19/153 (12%)
Query: 56 PEAPKNIRI--TEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGS 112
P P N+ + +EE S L+++WT P + I +Y IQY++ + W P + +
Sbjct: 199 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA-ST 257
Query: 113 QTSATLQPLLPATQY--QVRLLAENPLG-MSETGAELQASTLEEAPNGAPREVTSDPGVV 169
++S T+Q L P T+Y ++R + E+ G S+ E T E+ P+ AP S +
Sbjct: 258 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAP----SFWYKI 313
Query: 170 DPTE------LLIKWKA-PPRESWNGVLLGYDV 195
DP+ + + WK PP E+ NG +L Y+V
Sbjct: 314 DPSHTQGYRTVQLVWKTLPPFEA-NGKILDYEV 345
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + ++A T + P+ P++V + T + + W PP +S NGV+ Y V Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCV--SMGSTTVRVSWVPPPADSRNGVITQYSVAY 58
Query: 198 QIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ V+ ++ + GL +T+Y + VR + VG GP S P +
Sbjct: 59 EAVDGEDRGRHV-----VDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLV 113
Query: 258 RTNE 261
RT+E
Sbjct: 114 RTDE 117
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 53 QETPEAP-KNIRITEESSRSLQISWTAP--YSGNTAITQYIIQYKSSEEMWPTQPLKIIV 109
Q TP AP + + S ++++SW P S N ITQY + Y++ + + + +
Sbjct: 15 QSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGI 74
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
+S L L T+Y+V + A +G + + T E+ P+G PR+V S P
Sbjct: 75 SREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGP 131
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 48 IQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMWPTQPLK 106
I + + + P P+ ++I + ++ ++WT P GN AIT Y IQ + M +
Sbjct: 10 IDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSM---EWFT 66
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
+I +TSAT+ L+ +Y R+ +EN G+SE + S +
Sbjct: 67 VIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAV 111
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
++P I ++ ++ S + W AP + IT Y I++ E + +P + VP S+ S
Sbjct: 187 DSPTGIDFSDITANSFTVHWIAPRA---TITGYRIRHH--PEHFSGRPREDRVPHSRNSI 241
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAEL-QASTLEEAPNGAPREVTSDPGVVDPTELL 175
TL L P T+Y V ++A N G E+ + Q ST+ + P EV + PT LL
Sbjct: 242 TLTNLTPGTEYVVSIVALN--GREESPLLIGQQSTVSDVPRDL--EVVA----ATPTSLL 293
Query: 176 IKWKAP 181
I W AP
Sbjct: 294 ISWDAP 299
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+ P+++ + + SL ISW AP + Y I Y + P Q + VPGS+++A
Sbjct: 277 DVPRDLEVVAATPTSLLISWDAPA---VTVRYYRITYGETGGNSPVQ--EFTVPGSKSTA 331
Query: 117 TLQPLLPATQYQVRLLA 133
T+ L P Y + + A
Sbjct: 332 TISGLKPGVDYTITVYA 348
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 48 IQLLVQE-TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK 106
IQ++ Q P P N + ES S+ +SWT P S I Y + YK E +
Sbjct: 9 IQVITQTGVPGQPLNFKAEPESETSILLSWTPPRS--DTIANYELVYKDGEHG--EEQRI 64
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
I PG TS LQ L P + Y RL A +P G+ + AE+ A T++ +
Sbjct: 65 TIEPG--TSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSS 110
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + + T E+AP+ APR+V + ++ T +L++WK P E NG + GY V Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQAR--MLSSTTILVQWKEP--EEPNGQIQGYRVYY 56
Query: 198 QIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ +K D+Q I L P Y++ V + S+G GP S
Sbjct: 57 TMDPTQHVNNW---MKHNVADSQI---TTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQV 110
Query: 258 RTNEG 262
T G
Sbjct: 111 ITQTG 115
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP----LKII 108
Q AP++++ SS ++ + W P N I Y + Y M PTQ +K
Sbjct: 16 QAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYT----MDPTQHVNNWMKHN 71
Query: 109 VPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
V SQ + T+ L+P Y V++LA +G +++Q T
Sbjct: 72 VADSQIT-TIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT 112
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
++P ++ ++ S + W AP + IT YII++ + + +P + VP S+ S
Sbjct: 3 DSPTGFDSSDITANSFTVHWVAPRA---PITGYIIRHHAEHSVG--RPRQDRVPPSRNSI 57
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAEL-QASTLEEAPNGAPREVTSDPGVVDPTELL 175
TL L P T+Y V ++A N G E+ + Q +T+ + P EV + PT LL
Sbjct: 58 TLTNLNPGTEYVVSIIAVN--GREESPPLIGQQATVSDIPRDL--EVIAS----TPTSLL 109
Query: 176 IKWKAP 181
I W+ P
Sbjct: 110 ISWEPP 115
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+ P+++ + + SL ISW P ++ Y I Y + P Q + VPGS+++A
Sbjct: 93 DIPRDLEVIASTPTSLLISWEPPA---VSVRYYRITYGETGGNSPVQ--EFTVPGSKSTA 147
Query: 117 TLQPLLPATQYQVRLLA 133
T+ + P Y + L A
Sbjct: 148 TINNIKPGADYTITLYA 164
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+AP ++++T + S+ +SWT P + IT Y I Y S P +P ++ VP S TS
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP---SATITGYRITYTPSNG--PGEPKELTVPPSSTSV 57
Query: 117 TLQPLLPATQYQVRLLA 133
T+ L P +Y V + A
Sbjct: 58 TITGLTPGVEYVVSVYA 74
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 56 PEAPKNIRI--TEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGS 112
P P N+ + +EE S L+++WT P + I +Y IQY++ + W P + +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA-ST 162
Query: 113 QTSATLQPLLPATQY--QVRLLAENPLG-MSETGAELQASTLEEAPNGAP 159
++S T+Q L P T+Y ++R + E+ G S+ E T E+ P+ P
Sbjct: 163 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 27 RQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTA 85
D G +C A N G + L+ +TP +P +I E S + Q+ + P +G
Sbjct: 85 ENDFGNYNCTAVNRIGQESLEFILVQADTPSSP-SIDQVEPYSSTAQVQFDEPEATGGVP 143
Query: 86 ITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA 144
I +Y ++++ EE+W ++ + T+ L P T Y VRL A N G+ E A
Sbjct: 144 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 203
Query: 145 ELQAST 150
+ T
Sbjct: 204 ASEFKT 209
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNT-AITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
P+ P ++ +TE ++ S+ ++W SGN+ +T Y IQY+++ P Q + + + T
Sbjct: 8 PKPPIDLVVTETTATSVTLTWD---SGNSEPVTYYGIQYRAAGTEGPFQEVDGV---ATT 61
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
++ L P ++Y R+LA N +G ++A T E++
Sbjct: 62 RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
E+D I GL+P+++YA V NS+G+GP SE ART E
Sbjct: 54 EVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXXYT 211
E+ P AP V + VV+ T + W P +S G L GY + Y +
Sbjct: 11 EDLPMVAPGNVRVN--VVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHI 68
Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
K + + +PGL P++ Y + VR N G+GP S + T EG
Sbjct: 69 EKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 43 TAEMTIQLLVQETPEAPKNIRITEESSRSLQISWT--APYSGNTAITQYIIQYKSSEEMW 100
+ ++ ++ L AP+N+ + +S+S+ I W AP + N IT Y I+Y+ +
Sbjct: 6 SGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRK- 64
Query: 101 PTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
+ + +V G+Q S ++ L T+Y R+ A G L A T E
Sbjct: 65 -SDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + ++ TL + P+ AP+ ++ + V + ++I W+ P + NG + GY + Y
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLE--VRNSKSIMIHWQPPAPATQNGQITGYKIRY 58
Query: 198 QIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ TL S +Q I GL T+Y V G GP ++ A
Sbjct: 59 R--KASRKSDVTETLVSGTQLSQL-----IEGLDRGTEYNFRVAALTINGTGPATDWLSA 111
Query: 258 RTNEGDF 264
T E D
Sbjct: 112 ETFESDL 118
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 56 PEAPKNIRI--TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
P P N+ + +EE S L+++WT P + I +Y IQY++ + +Q ++
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 259
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
+S T+Q L P T+Y R+ M E G + EEA
Sbjct: 260 SSFTVQDLKPFTEYVFRIRC-----MKEDGKGYWSDWSEEA 295
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 56 PEAPKNIRI--TEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGS 112
P P N+ + +EE S L+++WT P + I +Y IQY++ + W P + +
Sbjct: 100 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA-ST 158
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
++S T+Q L P T+Y R+ M E G + EEA
Sbjct: 159 RSSFTVQDLKPFTEYVFRIRC-----MKEDGKGYWSDWSEEA 195
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 56 PEAPKNIRI--TEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGS 112
P P N+ + +EE S L+++WT P + I +Y IQY++ + W P + +
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPE-DTAST 258
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
++S T+Q L P T+Y R+ M E G + EEA
Sbjct: 259 RSSFTVQDLKPFTEYVFRIRC-----MKEDGKGYWSDWSEEA 295
>pdb|2EKJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 105
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 61 NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP 120
N+ + E+ SLQ+SWT P + Y + Y + + P + + VPG+++ TL
Sbjct: 13 NLALASETPDSLQVSWTPPLG---RVLHYWLTYAPASGLGPEK--SVSVPGARSHVTLPD 67
Query: 121 LLPATQYQVRLLAENPLGMSE 141
L AT+Y+V + A G SE
Sbjct: 68 LQAATKYRVLVSAIYAAGRSE 88
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 36 LATNYHGT---AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYII 91
LA N +G AE + E P P I + + + S+ +SW P + G + I YI+
Sbjct: 80 LAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIV 139
Query: 92 --QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
Q K S++ +K+ T AT+ L+ +Y R+ A+N G+S+
Sbjct: 140 EMQTKGSDKWATCATVKV------TEATITGLIQGEEYSFRVSAQNEKGISD 185
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 54 ETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPG 111
+TP P+++++ E + S+ ++W P G + I YI++ + S+ + + T +
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYST----VATNC 59
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQAS 149
+TS + L Y R+LAEN G+ +ET ++AS
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKAS 100
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P AP+++ + S+R ++++W P S + + E + + PG +
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPG-EMQ 76
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
T+Q L+PAT Y R++A+N G E+ A L+ T E+
Sbjct: 77 VTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPES 115
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 56 PEAPKNIRI--TEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGS 112
P P N+ + +EE S L+++WT P + I +Y IQY++ + W P + +
Sbjct: 6 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA-ST 64
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
++S T+Q L P T+Y R+ M E G + EEA
Sbjct: 65 RSSFTVQDLKPFTEYVFRIRC-----MKEDGKGYWSDWSEEA 101
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+ P+++ + + SL ISW AP + Y I Y + P Q + VPGS+++A
Sbjct: 3 DVPRDLEVVAATPTSLLISWDAP---AVTVRYYRITYGETGGNSPVQ--EFTVPGSKSTA 57
Query: 117 TLQPLLPATQYQVRLLAENPLGMS 140
T+ L P Y + + A G S
Sbjct: 58 TISGLKPGVDYTITVYAVTGRGDS 81
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 29/201 (14%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
PK+ +IT+ SR + W NT +YK++ L +V G
Sbjct: 31 PKHQKITD--SRYYTVRWKTNIPANT-------KYKNANAT----TLSYLVTG------- 70
Query: 119 QPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
L P T Y+ ++ S +T E P P++VT P +++ W
Sbjct: 71 --LKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNW 128
Query: 179 KAPPRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAI 238
+ PP E+ NG + GY + Y + ++ V + N+ +++ LT T Y
Sbjct: 129 Q-PPSEA-NGKITGYIIYYS--TDVNAEIHDWVIEPV-VGNRLTHQIQ--ELTLDTPYYF 181
Query: 239 VVRGYNSVGKGPFSEPFIART 259
++ NS G GP SE RT
Sbjct: 182 KIQARNSKGMGPMSEAVQFRT 202
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 43 TAEMTIQLLVQETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM- 99
TA T LV +P PK++ + E +++ ++W P N IT YII Y +
Sbjct: 95 TAHGTTFELVPTSP--PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAE 152
Query: 100 ---WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
W +P V G++ + +Q L T Y ++ A N GM +Q T
Sbjct: 153 IHDWVIEP----VVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 202
>pdb|3T04|D Chain D, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
Length = 103
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
P + + + + SL+ISW A YS + Y I Y + P Q + VPG ++AT+
Sbjct: 11 PTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQ--EFTVPGYYSTATI 68
Query: 119 QPLLPATQYQVRLLAEN 135
L P Y + + A +
Sbjct: 69 SGLKPGVDYTITVYAYD 85
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS--SEEMWPTQPLKIIVPGSQTS 115
+P +I S +S ++S T G I +YI++Y+S E+ W L+ V G++
Sbjct: 10 SPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQW----LEKKVQGNKDH 65
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
L+ L Y+V++ A N LG SE
Sbjct: 66 IILEHLQWTMGYEVQITAANRLGYSE 91
>pdb|2OCF|D Chain D, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 121
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+ P + + + SL ISW AP + Y I Y + P Q + VPGS+++A
Sbjct: 30 DVPTKLEVVAATPTSLLISWDAP---AVTVRYYRITYGETGGNSPVQ--EFTVPGSKSTA 84
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAE 145
T+ L P Y + + A L + G++
Sbjct: 85 TISGLKPGVDYTITVYAVTGLRLMLAGSK 113
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ--- 113
+AP N+R + SL +SW P + IT YII+Y+ P P + +VP +
Sbjct: 203 DAPSNLRFLATTPNSLLVSWQPPRA---RITGYIIKYEK-----PGSPPREVVPRPRPGV 254
Query: 114 TSATLQPLLPATQYQVRLLA 133
T AT+ L P T+Y + ++A
Sbjct: 255 TEATITGLEPGTEYTIYVIA 274
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
P+ R+T+ + ++ ISW + IT + + + P Q + I P + S T+
Sbjct: 116 PRRARVTDATETTITISW---RTKTETITGFQVDAVPANGQTPIQ--RTIKPDVR-SYTI 169
Query: 119 QPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
L P T Y++ L N S + + AST +AP+ T+ P LL+ W
Sbjct: 170 TGLQPGTDYKIYLYTLNDNARS-SPVVIDASTAIDAPSNLRFLATT------PNSLLVSW 222
Query: 179 KAPPRESWNGVLLGYD 194
+ PPR G ++ Y+
Sbjct: 223 Q-PPRARITGYIIKYE 237
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
AP +++ T+ + SL WT P N +T Y ++ E+ P + + + P S +S
Sbjct: 23 APTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKTGPMKEIN-LAPDS-SSVV 77
Query: 118 LQPLLPATQYQVRLLA 133
+ L+ AT+Y+V + A
Sbjct: 78 VSGLMVATKYEVSVYA 93
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ--- 113
+AP N+R + SL +SW P + IT YII+Y+ P P + +VP +
Sbjct: 184 DAPSNLRFLATTPNSLLVSWQPPRA---RITGYIIKYEK-----PGSPPREVVPRPRPGV 235
Query: 114 TSATLQPLLPATQYQVRLLA 133
T AT+ L P T+Y + ++A
Sbjct: 236 TEATITGLEPGTEYTIYVIA 255
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
P+ R+T+ + ++ ISW + IT + + + P Q + I P + S T+
Sbjct: 97 PRRARVTDATETTITISW---RTKTETITGFQVDAVPANGQTPIQ--RTIKPDVR-SYTI 150
Query: 119 QPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
L P T Y++ L N S + + AST +AP+ T+ P LL+ W
Sbjct: 151 TGLQPGTDYKIYLYTLNDNARS-SPVVIDASTAIDAPSNLRFLATT------PNSLLVSW 203
Query: 179 KAPPRESWNGVLLGYD 194
+ PPR G ++ Y+
Sbjct: 204 Q-PPRARITGYIIKYE 218
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
P N+ + + SL ISW A Y G ++ Y I Y + P Q + VP S ++AT+
Sbjct: 107 PTNLEVVAATPTSLLISWDASYYG---VSYYRITYGETGGNSPVQ--EFTVPYSSSTATI 161
Query: 119 QPLLPATQYQVRLLA 133
L P Y + + A
Sbjct: 162 SGLKPGVDYTITVYA 176
>pdb|3UYO|D Chain D, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 95
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
P + + + SL ISW AP + Y+I Y + P Q + VPGS+++A
Sbjct: 5 SVPTKLEVVAATPTSLLISWDAP---AVTVDFYVITYGETGGNSPVQ--EFTVPGSKSTA 59
Query: 117 TLQPLLPATQYQVRLLA 133
T+ L P Y + + A
Sbjct: 60 TISGLSPGVDYTITVYA 76
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 42 GTAEMTIQLLVQETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM 99
GTA T LV +P PK++ + E +++ ++W P N IT YII Y +
Sbjct: 7 GTAHGTTFELVPTSP--PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNA 64
Query: 100 ----WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
W +P V G++ + +Q L T Y ++ A N GM +Q T
Sbjct: 65 EIHDWVIEP----VVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 115
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + +T E P P++VT P +++ W+ PP E+ NG + GY + Y
Sbjct: 1 GSSGSSGTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQ-PPSEA-NGKITGYIIYY 58
Query: 198 QIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ ++ V + N+ +++ LT T Y ++ NS G GP SE
Sbjct: 59 S--TDVNAEIHDWVIEPV-VGNRLTHQIQ--ELTLDTPYYFKIQARNSKGMGPMSEAVQF 113
Query: 258 RT 259
RT
Sbjct: 114 RT 115
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY--KSSEEMWPTQPLKIIVPGSQ 113
P A +IR+T S SL ++W P + + A+ Y ++Y K +E + LK S+
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKT----SE 63
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST-LEEAPN 156
A L+ L Y V++ A + G G E + T L+ P+
Sbjct: 64 NRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSGPS 107
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P+ K ++T S+ Q++W P S T +T+Y +++ E ++I G S
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGS-----MQICYCGPGLS 62
Query: 116 ATLQPLLPATQYQVRLLAENPLG 138
++ L PAT Y R+ A + +G
Sbjct: 63 YEIKGLSPATTYYCRVQALSVVG 85
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSE 253
I GL+P T Y V+ + VG GPFSE
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSE 91
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNI 62
L I NV +DSG CLA+N G+ TI + V+ P + PKN+
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNL 322
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
P N+ + + SL ISW A Y ++ Y I Y + P Q + VPGS+++AT+
Sbjct: 108 PTNLEVVAATPTSLLISWDA-YR-ELPVSYYRITYGETGGNSPVQ--EFTVPGSKSTATI 163
Query: 119 QPLLPATQYQVRLLAE 134
L P Y + + A
Sbjct: 164 SGLKPGVDYTITVYAH 179
>pdb|1FNA|A Chain A, Crystal Structure Of The Tenth Type Iii Cell Adhesion
Module Of Human Fibronectin
Length = 91
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 60 KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQ 119
+++ + + SL ISW AP + Y I Y + P Q + VPGS+++AT+
Sbjct: 1 RDLEVVAATPTSLLISWDAP---AVTVRYYRITYGETGGNSPVQ--EFTVPGSKSTATIS 55
Query: 120 PLLPATQYQVRLLAENPLGMS 140
L P Y + + A G S
Sbjct: 56 GLKPGVDYTITVYAVTGRGDS 76
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 126
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLT 231
T +++ W P E+ N V+ GY +GY I T+K V+ +Y I L
Sbjct: 41 TSIVVSWTPP--ENQNIVVRGYAIGYGIGSPHAQ-----TIK-VDYKQRY---YTIENLD 89
Query: 232 PYTKYAIVVRGYNSVGKG-PFSEPFIAR 258
P + Y I ++ +N+VG+G P E + R
Sbjct: 90 PSSHYVITLKAFNNVGEGIPLYESAVTR 117
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
PE P ++ + + S+ +SWT P + N + Y I Y T I V Q
Sbjct: 28 PEVPSSLHVRPLVT-SIVVSWTPPENQNIVVRGYAIGYGIGSPHAQT----IKVDYKQRY 82
Query: 116 ATLQPLLPATQYQVRLLAENPLG 138
T++ L P++ Y + L A N +G
Sbjct: 83 YTIENLDPSSHYVITLKAFNNVG 105
>pdb|1LWR|A Chain A, Solution Structure Of The Ncam Fibronectin Type Iii Module
2
Length = 96
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P APK E S++++ G + I Y+++Y++ W + I +P
Sbjct: 3 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVKYRALASEWKPE---IRLPSGSDH 59
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSET 142
L+ L +Y+V ++AEN G S+
Sbjct: 60 VMLKSLDWNAEYEVYVVAENQQGKSKA 86
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 69 SRSLQISWTAPY-SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQY 127
++ +Q+ W P G + I+ Y ++ E+ P + + GS+ T+ LLP Y
Sbjct: 23 AKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE----VYQGSEVECTVSSLLPGKTY 78
Query: 128 QVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
RL A N +G + +T AP P
Sbjct: 79 SFRLRAANKMGFGPFSEKCDITT---APGSGP 107
>pdb|2CUM|A Chain A, The Solution Structure Of The 33rd Fibronectin Type Iii
Domain Of Human Tenascin-X
Length = 105
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
EAP+++ E + R+ ++WT P Y++ + + Q +I++PG TS
Sbjct: 9 EAPRDLEAKEVTPRTALLTWTEP---PVRPAGYLLSFHTPGG----QTQEILLPGGITSH 61
Query: 117 TLQPLLPATQYQVRLLA 133
L L P+T Y RL A
Sbjct: 62 QLLGLFPSTSYNARLQA 78
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTL-SCLATNYHGTAEMTIQLLVQ 53
RYT+ E+G+IS L I+N++R D T+ +C A N G+ I+L Q
Sbjct: 62 RYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 176 IKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTK 235
+ W P NG ++ Y V ++ L+++ D ++ + GL P T
Sbjct: 27 LAWDPPVLAERNGRIISYTVVFR------DINSQQELQNITTDTRFT----LTGLKPDTT 76
Query: 236 YAIVVRGYNSVGKGPFSEPFIART 259
Y I VR + S G GP S +RT
Sbjct: 77 YDIKVRAWTSKGSGPLSPSIQSRT 100
>pdb|2CK2|A Chain A, Structure Of Core-Swapped Mutant Of Fibronectin
pdb|2CK2|B Chain B, Structure Of Core-Swapped Mutant Of Fibronectin
Length = 96
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAIT-QYI-IQYKSSEEMWPTQPLKIIVPGSQT 114
+ P++I + + S ISW AP A+T +YI + Y + P Q +I +PGS++
Sbjct: 3 DVPRDIEVVAVTPTSALISWDAP-----AVTIRYIRLTYGETGGNSPVQ--EITLPGSKS 55
Query: 115 SATLQPLLPATQYQVRLLAENPLGMS 140
+ T+ L P T Y V L + G S
Sbjct: 56 TYTISGLKPGTDYTVTLYSVTGRGDS 81
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLT 231
T L + W+ P + NG+L GY + ++ Y L +V L E R+ GLT
Sbjct: 32 TSLKVSWQEPGEK--NGILTGYRISWEEYNRTNTRVTHY-LPNVTL------EYRVTGLT 82
Query: 232 PYTKYAIVVRGYNSVGKGPFSEPFIA 257
T Y I V S G+G S I+
Sbjct: 83 ALTTYTIEVAAMTSKGQGQVSASTIS 108
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
DG L + ++D G +C+ATN G E + +LL+Q TP+
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQ 102
>pdb|2DM4|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
SorlaLR11
Length = 108
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 56 PEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQY-KSSEEMWPTQPLKIIVPGS 112
P+AP+N++++ E+ + W P + I +YI++Y +S +MW +Q +
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQ------RAA 61
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGM 139
++ LL T Y VR+ A G+
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGI 88
>pdb|1J8K|A Chain A, Nmr Structure Of The Fibronectin Eda Domain, Nmr, 20
Structures
Length = 94
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE----EMWPTQPLKIIVPGS 112
+ PK + T+ S++I+W +P +++Y + Y S E E++P G
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESP---QGQVSRYRVTYSSPEDGIHELFPAP------DGE 53
Query: 113 QTSATLQPLLPATQYQVRLLA 133
+ +A LQ L P ++Y V ++A
Sbjct: 54 EDTAELQGLRPGSEYTVSVVA 74
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
PEAP I+ S S+ ++W +G I + ++YK +++ +P S+ S
Sbjct: 18 PEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLS 77
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGA 144
+ L Y+ R+ A N LG SE A
Sbjct: 78 VEITGLEKGISYKFRVRALNMLGESEPSA 106
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 61 NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP 120
N+R S S+ ++W P SGN I Y + Y M + V S S T+
Sbjct: 23 NLRAYAASPTSITVTWETPVSGNGEIQNYKLYY-----MEKGTDKEQDVDVSSHSYTING 77
Query: 121 LLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
L T+Y R++A N G + ++ TL ++
Sbjct: 78 LKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDS 111
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
Q+ ++G + L IA +DSGT S ATN G A T +LLVQ
Sbjct: 151 QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP------KNIRIT 65
DG ++L I V + +SG S ATN G A T +LLV+ P +++ +
Sbjct: 58 FSDGR-AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVR 116
Query: 66 EESSRSLQISWTA-PYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPA 124
+ S LQ+ T P T + ++ Y+ E+ + +I G S + P
Sbjct: 117 QGSQVRLQVRVTGIP----TPVVKF---YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE 169
Query: 125 TQYQVRLLAENPLGMSETGAEL--QASTLEE 153
+ A N +G + + AEL Q T EE
Sbjct: 170 DSGTYSVNATNSVGRATSTAELLVQGETREE 200
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P APK E S++++ G + I Y+++Y++ W + I +P
Sbjct: 110 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPE---IRLPSGSDH 166
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETG 143
L+ L +Y+V ++AEN G S+
Sbjct: 167 VMLKSLDWNAEYEVYVVAENQQGKSKAA 194
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 50 LLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKI 107
L +TP +P +I E S + Q+ + P +G I +Y ++++ EE+W ++
Sbjct: 3 LAQADTPSSP-SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA 144
+ T+ L P T Y VRL A N G+ E A
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 98
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
Q+ ++G + L IA +DSGT S ATN G A T +LLVQ
Sbjct: 151 QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P APK E S++++ G + I Y+++Y++ W + I +P
Sbjct: 110 PSAPKLEGQRGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPE---IRLPSGSDH 166
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETG 143
L+ L +Y+V ++AEN G S+
Sbjct: 167 VMLKSLDWNAEYEVYVVAENQQGKSKAA 194
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 50 LLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKI 107
L +TP +P +I E S + Q+ + P +G I +Y ++++ EE+W ++
Sbjct: 3 LAQADTPSSP-SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA 144
+ T+ L P T Y VRL A N G+ E A
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 98
>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 283
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 25/135 (18%)
Query: 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
S+Y++ Q L G E+ I+ V GT A++ T E+ +APKN
Sbjct: 67 LSQYSV--QALRPGSRYEVSISAV----RGTNESDASSTQFTTEI----------DAPKN 110
Query: 62 IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP---GSQTSATL 118
+R+ ++ SL + W + +Y + Y + + Q +++VP G T TL
Sbjct: 111 LRVGSRTATSLDLEWD---NSEAEAQEYKVVYST---LAGEQYHEVLVPKGIGPTTKTTL 164
Query: 119 QPLLPATQYQVRLLA 133
L+P T+Y V + A
Sbjct: 165 TDLVPGTEYGVGISA 179
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 58 APKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
APK++ + E R++ +SW P N IT YI+ Y + + + + G + +
Sbjct: 11 APKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLT 70
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
+ L T Y R+ A N G+ + TL+
Sbjct: 71 HQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLK 107
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKS 214
P AP+++T P +++ W+ PP E+ NG + Y + Y + + +++
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQ-PPLEA-NGKITAYILFYTLDKNIPIDD--WIMET 63
Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
+ D +I L T Y ++ NS G GP S+P + RT
Sbjct: 64 ISGDRLTH---QIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLT 231
T + + W+ P E NG++L Y++ Y TLK+V + GL
Sbjct: 25 TSVSLLWQEP--EQPNGIILEYEIKY--YEKDKEMQSYSTLKAVTT------RATVSGLK 74
Query: 232 PYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
P T+Y VR S G G FS+ T +
Sbjct: 75 PGTRYVFQVRARTSAGCGRFSQAMEVETGK 104
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ-YKSSEEMWPTQPLKIIVPG 111
Q P IR S+ + W P N I +Y I+ Y+ +EM LK +
Sbjct: 8 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVT-- 65
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLG 138
T AT+ L P T+Y ++ A G
Sbjct: 66 --TRATVSGLKPGTRYVFQVRARTSAG 90
>pdb|3QWQ|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 114
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+ P+++ + + SL ISW SG + Y I Y + P Q + VPG +A
Sbjct: 5 DVPRDLEVVAATPTSLLISWD---SGRGSYQYYRITYGETGGNSPVQ--EFTVPGPVHTA 59
Query: 117 TLQPLLPATQYQVRLLA 133
T+ L P Y + + A
Sbjct: 60 TISGLKPGVDYTITVYA 76
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
+PK I ++ + S +SWT P S + Y + Y + P + V GS+T
Sbjct: 97 SPKGISFSDITENSATVSWTPPRS---RVDSYRVSY---VPITGGTPNVVTVDGSKTRTK 150
Query: 118 LQPLLPATQYQVRLLA 133
L L+P Y V +++
Sbjct: 151 LVKLVPGVDYNVNIIS 166
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+ PK++ +++ + +L + W P + +Y + Y S + ++ +P TS
Sbjct: 8 DNPKDLEVSDPTETTLSLRWRRPVA---KFDRYRLTYVSPSG----KKNEMEIPVDSTSF 60
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNG 157
L+ L T+Y + L+AE S+ ++ ST+ +P G
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKSKP-TTIKGSTVVGSPKG 100
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
EL + ++ +DSG C+A N HGT + +L VQ
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
>pdb|2DBJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Proto-
Oncogene Tyrosine-Protein Kinase Mer Precursor
Length = 124
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVT------SDPGVVDPTELLIKWKAPPRESWNGVLL 191
G S + + AST E AP+ AP VT SD + I+W PP + +G L+
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSD-------NVDIRWMKPPTKQQDGELV 53
Query: 192 GYDVGYQIXXXXXXXXXXYTLKSV-ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
GY + + L+ V + ++ +++ T + A V RG G GP
Sbjct: 54 GYRISH---VWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRG----GVGP 106
Query: 251 FSEP 254
FS+P
Sbjct: 107 FSDP 110
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 145 ELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIXXXXX 204
++ TL + P+ P+ V+ + VV+ + + W PP + NG + GY + ++
Sbjct: 18 DITVVTLSDVPSAPPQNVSLE--VVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRG 75
Query: 205 XXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
++++E +N + GL ++Y+ V G GP S + A T E
Sbjct: 76 E------METLEPNNLW---YLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 43 TAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSS 96
T ++T+ L P+N+ + +SRS+++SW P SG N IT Y I+++ +
Sbjct: 16 TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKT 71
>pdb|3RZW|A Chain A, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|B Chain B, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 95
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
P + + + SL ISW A G I Y I Y + P Q + VPG ++AT+
Sbjct: 10 PTKLEVVAATPTSLLISWDA---GYWFIDYYRITYGETGGNSPVQ--EFTVPGYSSTATI 64
Query: 119 QPLLPATQYQVRLLA 133
L P Y + + A
Sbjct: 65 SGLSPGVDYTITVYA 79
>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of Human
Ncam1
Length = 105
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 54 ETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPG 111
+TP +P +I E S + Q+ + P +G I +Y ++++ EE+W ++
Sbjct: 5 DTPSSP-SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGA 144
+ T+ L P T Y VRL A N G+ E A
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 96
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA 58
R VL DG L ++VL D+G +C+ TN G + + L V P +
Sbjct: 55 RISVLNDG---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPSS 102
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P AP+++ SSR +++SW P I + + + S E + L PGS
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTV-FFSREGDNRERALNTTQPGS-LQ 75
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
T+ L P Y R++A N G E+ ++ +T E+
Sbjct: 76 LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPES 114
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHG--TAEMTIQL 50
Y +R VL DG L NV QD+G +C+ TN G TA T+ +
Sbjct: 358 YRVRISVLHDGT---LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 49 QLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKII 108
Q + + P N+ + + SL ISW A YS + + + I Y + P Q +
Sbjct: 363 QTRITKGSSVPTNLEVVAATPTSLLISWDASYSSSVSYYR--ITYGETGGNSPVQ--EFT 418
Query: 109 VPGSQTSATLQPLLPATQYQVRL 131
VPGS+++AT+ L P Y + +
Sbjct: 419 VPGSKSTATISGLKPGVDYTITV 441
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 49 QLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKII 108
Q + + P N+ + + SL ISW A YS + + + I Y + P Q +
Sbjct: 363 QTRITKGSSVPTNLEVVAATPTSLLISWDASYSSSVSYYR--ITYGETGGNSPVQ--EFT 418
Query: 109 VPGSQTSATLQPLLPATQYQVRL 131
VPGS+++AT+ L P Y + +
Sbjct: 419 VPGSKSTATISGLSPGVDYTITV 441
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
P N+ + + SL ISW A S I Y + P Q + VPGS+++AT+
Sbjct: 376 PTNLEVVAATPTSLLISWDAYSSSYYVYYYRIT-YGETGGNSPVQ--EFTVPGSKSTATI 432
Query: 119 QPLLPATQYQVRLLAENPL 137
L P Y + + A + L
Sbjct: 433 SGLKPGVDYTITVYAGHYL 451
>pdb|4HUK|B Chain B, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|B Chain B, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|B Chain B, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|B Chain B, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 99
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
P + + + SL ISW A + Y I Y + P Q + VPGS ++A
Sbjct: 11 SVPTKLEVVAATPTSLLISWDAR---GEYVVYYRITYGETGGNSPVQ--EFTVPGSSSTA 65
Query: 117 TLQPLLPATQYQVRLLAEN 135
T+ L P Y + + A +
Sbjct: 66 TISGLSPGVDYTITVYARS 84
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
L + V + D+G +C A+N G + QL VQE P K + + + +
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 80 YSGNTAITQYIIQYKSSEEMWPTQPLKI 107
G+ I ++ YK E+ + ++
Sbjct: 123 IGGSPEIK--VLWYKDETEIQESSKFRM 148
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 187 NGVLLGYDVGYQIXXXXXXXXXXYTLK--SVELDNQYEGELRIPGLTPYTKYAIVVRGYN 244
+G +GY V Y I K SVEL N Y PY Y + V Y
Sbjct: 30 SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLY----------PYCDYEMKVCAYG 79
Query: 245 SVGKGPFSEPFIARTNE 261
+ G+GP+S RT++
Sbjct: 80 AQGEGPYSSLVSCRTHQ 96
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIV 109
QE P P + SS Q+SW P N IT Y + Y +++ P P+K ++
Sbjct: 96 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL 153
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 187 NGVLLGYDVGYQIXXXXXXXXXXYTLK--SVELDNQYEGELRIPGLTPYTKYAIVVRGYN 244
+G +GY V Y I K SVEL N Y PY Y + V Y
Sbjct: 29 SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLY----------PYCDYEMKVCAYG 78
Query: 245 SVGKGPFSEPFIARTNE 261
+ G+GP+S RT++
Sbjct: 79 AQGEGPYSSLVSCRTHQ 95
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIV 109
QE P P + SS Q+SW P N IT Y + Y +++ P P+K ++
Sbjct: 95 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL 152
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 187 NGVLLGYDVGYQIXXXXXXXXXXYTLK--SVELDNQYEGELRIPGLTPYTKYAIVVRGYN 244
+G +GY V Y I K SVEL N Y PY Y + V Y
Sbjct: 26 SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLY----------PYCDYEMKVCAYG 75
Query: 245 SVGKGPFSEPFIARTNE 261
+ G+GP+S RT++
Sbjct: 76 AQGEGPYSSLVSCRTHQ 92
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIV 109
QE P P + SS Q+SW P N IT Y + Y +++ P P+K ++
Sbjct: 92 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL 149
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 30 SGTLSCLATNYHGTAEMTIQLLVQETPEAP-KNIRITEESSRSLQISWTAPYSGNTAITQ 88
SG C + T ++ + L + P P K +R TE S L++ W++ ++ +
Sbjct: 135 SGVKKCCSNGCGHTCQVP-KTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI 193
Query: 89 YIIQYKSSEEMWPTQP----LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG 138
Y++Q + + + P++ + + + L + P+ YQ R+ A N G
Sbjct: 194 YVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHG 247
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 187 NGVLLGYDVGYQIXXXXXXXXXXYTLK--SVELDNQYEGELRIPGLTPYTKYAIVVRGYN 244
+G +GY V Y I K SVEL N Y PY Y + V Y
Sbjct: 30 SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLY----------PYCDYEMKVCAYG 79
Query: 245 SVGKGPFSEPFIARTNE 261
+ G+GP+S RT++
Sbjct: 80 AQGEGPYSSLVSCRTHQ 96
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIV 109
QE P P + SS Q+SW P N IT Y + Y +++ P P+K ++
Sbjct: 96 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVL 153
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 224 ELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+L+ L P T Y V G N+ G+GPFSE
Sbjct: 47 QLKKQELQPGTAYKFRVAGINACGRGPFSE 76
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 6 TIREQVLEDGMISELGIANVLRQ-----DSGTLSCLATNYHGTAEMTIQLLV 52
T++ L ++SE G+ +++ + D+G +C+A N G A T+QL V
Sbjct: 45 TVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
L +ANV +D G C ATN+ G AE L V
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH 217
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
L + V + D+G +C A+N G + QL VQE P K + + + +
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314
Query: 80 YSGNTAITQYIIQYKSSEEMWPTQPLKI 107
G+ I ++ YK E+ + ++
Sbjct: 315 IGGSPEIK--VLWYKDETEIQESSKFRM 340
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA 44
R R VLE G L I NV ++D+G C+A N GTA
Sbjct: 142 RENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTA 179
>pdb|2EE3|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 108
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 59 PKNIRITEESSRSLQISW-TAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
P+++ ++ S + ++ W AP + + Y SSE Q PG+ TSA
Sbjct: 11 PRHLGFSDVSHDAARVFWEGAPR----PVRLVRVTYVSSEGGHSGQ---TEAPGNATSAM 63
Query: 118 LQPLLPATQYQVRLLAENPLGMSET 142
L PL +T Y VR+ P G S T
Sbjct: 64 LGPLSSSTTYTVRVTCLYPGGGSST 88
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 3 SRYTIREQVLEDG-MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
RY + + V +G ++S L I +V D G C+A + G AE + +L V P
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
+ +L + + +DSG C+A N HGT + +L VQ
Sbjct: 343 LAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQ 380
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
L I +V +D GT C A N G + +++VQ PE K I TE S + W
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGS-NLRWGCA 316
Query: 80 YSGN 83
+G
Sbjct: 317 AAGK 320
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 42 GTAEMTIQLLVQETP-EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMW 100
G++ + + Q+ P EAP + + SS + + W + + Y I+Y ++ +
Sbjct: 4 GSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWE--HVLEKIVESYQIRYWAAHDK- 60
Query: 101 PTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG 138
++ V + SA L+ LLP TQY + + A N G
Sbjct: 61 EEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAG 98
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET 55
Y +R VL DG L NV QD+G +C+ +N G + L V T
Sbjct: 387 YKVRIAVLSDG---TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGT 434
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51
R R + +DG + EL I + D+G SC+ +A +T++ L
Sbjct: 48 RDGDRHSLRQDGAVCELQICGLAVADAGEYSCVCGEERTSATLTVKAL 95
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
S L I V++ D G C+A N G A+ + QL+V
Sbjct: 365 SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 18 SELGIANVLRQDSGTLSCLAT----NYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ 73
S L I+NV DSGT +C+ T N +AE+T+ L+ P N+ E S+
Sbjct: 275 SNLLISNVTDDDSGTYTCVVTYKNENISASAELTV-LVPPWFLNHPSNLYAYE----SMD 329
Query: 74 ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA 133
I + SG T + K+ + + P+ +I+ ++ + ++ + + + +A
Sbjct: 330 IEFECAVSGKPVPT--VNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVA 384
Query: 134 ENPLGMSETGAEL 146
EN G +++ A+L
Sbjct: 385 ENEAGNAQSSAQL 397
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
W Q I+VPG S L ++PA RLL +PL + ++ A T E P
Sbjct: 140 WSEQEAAILVPGDIVSIKLGDIIPA---DARLLEGDPLKVDQS-----ALTGESLP---- 187
Query: 160 REVTSDPG 167
VT PG
Sbjct: 188 --VTKHPG 193
>pdb|2E3V|A Chain A, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|B Chain B, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|C Chain C, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
Length = 122
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 62 IRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSATLQ 119
I E S + Q+ + P +G I +Y ++++ EE+W ++ + T+
Sbjct: 13 IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASXEGIVTIV 72
Query: 120 PLLPATQYQVRLLAENPLGMSETGA 144
L P T Y VRL A N G+ E A
Sbjct: 73 GLKPETTYAVRLAALNGKGLGEISA 97
>pdb|3QHT|C Chain C, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|D Chain D, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 97
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL 118
P + + + SL ISW A +++++ Y I Y + P Q + VPGS ++AT+
Sbjct: 8 PTKLEVVAATPTSLLISWDAS---SSSVSYYRITYGETGGNSPVQ--EFTVPGSSSTATI 62
Query: 119 QPLLPATQYQVRL 131
L P Y + +
Sbjct: 63 SGLSPGVDYTITV 75
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 9 EQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMT--IQLLVQ 53
E+ + G +EL + N++ D G C ATN G E +Q+ VQ
Sbjct: 143 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
PE P+ I ++ +SW P G + +T Y I+ + E M + T
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKR--EAMGGS--WSPCAKSRYT 65
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSE 141
T++ L QY+ R++AEN G S+
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSK 92
>pdb|3D1M|C Chain C, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|D Chain D, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3N1F|C Chain C, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|D Chain D, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1Q|C Chain C, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|D Chain D, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|F Chain F, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 102
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 55 TPEAPKNIRITEE-SSRSLQISWT-APYSGN-TAITQYIIQYKSSEEMWPTQPLKIIVPG 111
TP +I TE S + + WT P S N T I + I Y+ ++ + + +V G
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSE 141
S+ + L P T Y +++ N G SE
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESE 92
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 11 VLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
V E+G+ S L I V +D+G +C+ATN G +++L+V P +
Sbjct: 60 VRENGVHS-LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPSS 109
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51
+Y++R+ DG + EL I + D+G SC+ +A +T++ L
Sbjct: 51 KYSLRQ----DGAVCELQIHGLAMADNGVYSCVCGQERTSATLTVRAL 94
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 9 EQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMT--IQLLVQ 53
E+ + G +EL + N++ D G C ATN G E +Q+ VQ
Sbjct: 239 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
>pdb|1WIS|A Chain A, Solution Structure Of The Fifth Fniii Domain From Human
Kiaa1514 Protein
Length = 124
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 216 ELDNQYEGE-LRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
+L N+ + + +P L P+T Y+ +R N VG P S+P
Sbjct: 71 QLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQP 110
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK 94
E P P N+ I+ RS+ + + Y G T+I++++++ +
Sbjct: 16 ELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQ 56
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
L + V + D+G +C A+N G + QL VQ P K + + + +
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 80 YSGNTAITQYIIQYKSSEEMWPTQPLKI 107
G+ I ++ YK E+ + ++
Sbjct: 123 IGGSPEIK--VLWYKDETEIQESSKFRM 148
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 9 EQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMT--IQLLVQ 53
E+ + G +EL + N++ D G C ATN G E +Q+ VQ
Sbjct: 49 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
>pdb|1Q15|A Chain A, Carbapenam Synthetase
pdb|1Q15|B Chain B, Carbapenam Synthetase
pdb|1Q15|C Chain C, Carbapenam Synthetase
pdb|1Q15|D Chain D, Carbapenam Synthetase
pdb|1Q19|A Chain A, Carbapenam Synthetase
pdb|1Q19|B Chain B, Carbapenam Synthetase
pdb|1Q19|C Chain C, Carbapenam Synthetase
pdb|1Q19|D Chain D, Carbapenam Synthetase
Length = 503
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 14 DGMISEL--GIANVLRQDSGTLSCLATNY 40
DG+ +E+ G+ NV RQ G +SC+ T Y
Sbjct: 317 DGLSAEIQSGLFNVYRQAQGQVSCMLTGY 345
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
R VL DG L ++VL D+G +C+ TN G + + L V
Sbjct: 400 RISVLNDG---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|1K85|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain
From Bacillus Circulans Wl-12 Chitinase A1
Length = 88
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQY 89
P AP N+ T +++ S+ +SWTA + N +T Y
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTAS-TDNVGVTGY 36
>pdb|2DB8|A Chain A, Solution Structures Of The Fn3 Domain Of Human Tripartite
Motif Protein 9
Length = 110
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 215 VELDNQYEGELR-----------IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
+ELD+ G+ R + GL + Y V+ +N G P+S+ + +T+EG
Sbjct: 46 LELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ--YKSSEEMWPTQPLKIIV 109
+ + P P ++T+ + S+ +SW G + YII+ +S W T +
Sbjct: 12 LSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHV-- 69
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
T T++ L P T Y + A NP G+S+
Sbjct: 70 --KTTLYTVRGLRPNTIYLFMVRAINPQGLSD 99
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51
RY++R+ DG EL I + D+G SC+ +A +T++ L
Sbjct: 52 RYSLRQ----DGTKCELQIRGLAMADTGEYSCVCGQERTSAMLTVRAL 95
>pdb|3TGX|A Chain A, Il-21:il21r Complex
pdb|3TGX|C Chain C, Il-21:il21r Complex
pdb|3TGX|E Chain E, Il-21:il21r Complex
pdb|3TGX|G Chain G, Il-21:il21r Complex
pdb|3TGX|I Chain I, Il-21:il21r Complex
pdb|3TGX|K Chain K, Il-21:il21r Complex
pdb|3TGX|M Chain M, Il-21:il21r Complex
pdb|3TGX|O Chain O, Il-21:il21r Complex
Length = 219
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAIT-----QYIIQYKSSEEMWPTQPLKIIVP 110
P P ++ +T S QISW + Y QY +QY++ + W P + ++
Sbjct: 101 PAPPFDVTVT--FSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLIS 158
Query: 111 GSQTSATLQPL 121
S +L PL
Sbjct: 159 VDSRSVSLLPL 169
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 71 SLQISWTAPYSGNTAITQYIIQYKSSEE-----MW 100
SL +WT SG TAIT Y S EE MW
Sbjct: 348 SLSKAWTNSQSGTTAITYTCDNYDSDEEFTRGCMW 382
>pdb|3CNV|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of A
Putative Gntr- Family Transcriptional Regulator From
Bordetella Bronchiseptica
pdb|3CNV|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of A
Putative Gntr- Family Transcriptional Regulator From
Bordetella Bronchiseptica
pdb|3CNV|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of A
Putative Gntr- Family Transcriptional Regulator From
Bordetella Bronchiseptica
pdb|3CNV|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of A
Putative Gntr- Family Transcriptional Regulator From
Bordetella Bronchiseptica
Length = 162
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 60 KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQ 119
+ +R E +R+L++ +G T +T I+ + S PT + +PG+
Sbjct: 27 RRLRAPAEIARALELR-----AGETVVT---IRRQLSXNHXPTVIDDLWLPGTHFRGLTL 78
Query: 120 PLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
LL A++ + L E+ G+S A+ + + +P AP
Sbjct: 79 ELLTASKAPLYGLFESEFGVSXVRADEKLRAVAASPEIAP 118
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
L + NV D+G C +NY G A + L V +AP
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
L + NV D+G C +NY G A + L V +AP
Sbjct: 186 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 225
>pdb|3HPG|A Chain A, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|B Chain B, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|C Chain C, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|D Chain D, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|E Chain E, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPG|F Chain F, Visna Virus Integrase (Residues 1-219) In Complex With
Ledgf Ibd: Examples Of Open Integrase Dimer-Dimer
Interfaces
pdb|3HPH|A Chain A, Closed Tetramer Of Visna Virus Integrase (Residues 1-219)
In Complex With Ledgf Ibd
pdb|3HPH|B Chain B, Closed Tetramer Of Visna Virus Integrase (Residues 1-219)
In Complex With Ledgf Ibd
pdb|3HPH|C Chain C, Closed Tetramer Of Visna Virus Integrase (Residues 1-219)
In Complex With Ledgf Ibd
pdb|3HPH|D Chain D, Closed Tetramer Of Visna Virus Integrase (Residues 1-219)
In Complex With Ledgf Ibd
Length = 219
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 141 ETGAELQASTLEEAPNGAPREVTSDPG---VVDPTELLIKW 178
ETG E + T++ AP+ + SD G V + T+LL+K+
Sbjct: 94 ETGQEFRVQTMKWYAMFAPKSLQSDNGPAFVAESTQLLMKY 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,145,125
Number of Sequences: 62578
Number of extensions: 320656
Number of successful extensions: 1346
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 204
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)