Query psy6638
Match_columns 273
No_of_seqs 194 out of 1802
Neff 11.7
Searched_HMMs 46136
Date Fri Aug 16 23:21:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4221|consensus 100.0 9.9E-30 2.1E-34 213.2 24.4 231 18-262 483-713 (1381)
2 KOG3513|consensus 100.0 1.5E-27 3.2E-32 200.5 25.6 237 18-265 577-820 (1051)
3 KOG3513|consensus 99.9 1.2E-23 2.6E-28 177.2 23.4 235 19-266 675-920 (1051)
4 KOG4221|consensus 99.9 9.6E-24 2.1E-28 177.7 20.6 228 20-268 383-619 (1381)
5 KOG0196|consensus 99.9 2.7E-22 5.8E-27 163.2 19.3 221 28-262 303-537 (996)
6 KOG4222|consensus 99.7 1.2E-16 2.7E-21 134.9 16.0 227 19-258 475-842 (1281)
7 PF00041 fn3: Fibronectin type 99.4 9.2E-13 2E-17 82.4 8.9 84 158-252 2-85 (85)
8 KOG0196|consensus 99.4 7.9E-12 1.7E-16 103.2 15.6 144 4-153 387-537 (996)
9 PF00041 fn3: Fibronectin type 99.3 2.8E-11 6E-16 75.6 9.1 84 57-142 1-84 (85)
10 KOG4258|consensus 99.1 2.9E-09 6.3E-14 88.8 12.5 230 19-258 567-921 (1025)
11 cd00063 FN3 Fibronectin type 3 99.0 1.5E-08 3.3E-13 63.8 10.1 90 158-258 3-92 (93)
12 KOG4802|consensus 98.9 2.1E-08 4.6E-13 76.9 10.3 127 114-250 209-341 (516)
13 cd05735 Ig8_DSCAM Eight immuno 98.9 1.4E-08 3.1E-13 63.4 7.6 57 3-59 32-88 (88)
14 KOG4222|consensus 98.8 1.2E-08 2.6E-13 87.8 8.1 217 19-253 377-614 (1281)
15 cd00063 FN3 Fibronectin type 3 98.7 8.4E-07 1.8E-11 55.7 11.7 85 56-144 1-87 (93)
16 cd05762 Ig8_MLCK Eighth immuno 98.7 1.1E-07 2.4E-12 60.6 6.8 47 13-59 51-97 (98)
17 cd05854 Ig6_Contactin-2 Sixth 98.5 5.7E-07 1.2E-11 55.7 6.5 40 17-56 46-85 (85)
18 smart00060 FN3 Fibronectin typ 98.5 2.6E-06 5.7E-11 52.0 8.8 77 161-248 6-82 (83)
19 cd05853 Ig6_Contactin-4 Sixth 98.4 8.7E-07 1.9E-11 54.5 5.4 39 18-56 47-85 (85)
20 cd04970 Ig6_Contactin_like Six 98.4 1.6E-06 3.5E-11 53.8 6.0 40 17-56 46-85 (85)
21 smart00060 FN3 Fibronectin typ 98.4 1.5E-05 3.3E-10 48.5 10.5 79 58-138 3-81 (83)
22 KOG4258|consensus 98.3 1.3E-05 2.9E-10 67.8 12.5 132 64-202 496-653 (1025)
23 PF10179 DUF2369: Uncharacteri 98.3 0.00064 1.4E-08 51.8 26.9 249 4-261 2-298 (300)
24 cd05773 Ig8_hNephrin_like Eigh 98.3 5.2E-06 1.1E-10 54.1 7.3 41 17-57 68-109 (109)
25 cd05898 Ig5_KIRREL3 Fifth immu 98.3 4.7E-06 1E-10 52.7 6.5 49 2-50 48-97 (98)
26 cd05892 Ig_Myotilin_C C-termin 98.2 7.9E-06 1.7E-10 49.1 6.1 36 17-52 40-75 (75)
27 KOG4367|consensus 98.2 4.1E-06 8.8E-11 65.2 5.6 82 169-261 450-531 (699)
28 cd05870 Ig5_NCAM-2 Fifth immun 98.2 1.1E-05 2.4E-10 51.5 6.6 37 15-51 61-97 (98)
29 cd05893 Ig_Palladin_C C-termin 98.1 9.7E-06 2.1E-10 48.8 5.8 36 17-52 40-75 (75)
30 cd05748 Ig_Titin_like Immunogl 98.1 1.2E-05 2.7E-10 48.3 6.3 39 14-52 36-74 (74)
31 cd05852 Ig5_Contactin-1 Fifth 98.1 8.3E-06 1.8E-10 48.8 5.0 33 19-51 40-72 (73)
32 cd05894 Ig_C5_MyBP-C C5 immuno 98.1 1.5E-05 3.3E-10 49.4 6.4 39 14-52 48-86 (86)
33 cd05869 Ig5_NCAM-1 Fifth immun 98.1 2E-05 4.2E-10 50.2 6.6 39 14-52 59-97 (97)
34 KOG4152|consensus 98.1 4.5E-05 9.6E-10 61.2 9.5 129 119-252 652-789 (830)
35 cd05726 Ig4_Robo Fhird immunog 98.0 2.5E-05 5.5E-10 48.9 6.6 38 19-56 48-85 (90)
36 KOG3632|consensus 98.0 7.2E-05 1.6E-09 64.4 10.8 198 30-250 644-857 (1335)
37 cd05758 Ig5_KIRREL3-like Fifth 98.0 2.5E-05 5.4E-10 49.9 6.3 48 3-50 49-97 (98)
38 cd05732 Ig5_NCAM-1_like Fifth 98.0 2.5E-05 5.5E-10 49.6 6.3 38 14-51 58-95 (96)
39 cd05866 Ig1_NCAM-2 First immun 98.0 3.4E-05 7.4E-10 48.4 6.0 39 13-51 51-90 (92)
40 cd05865 Ig1_NCAM-1 First immun 97.9 5.4E-05 1.2E-09 48.0 6.4 39 14-52 56-95 (96)
41 cd05745 Ig3_Peroxidasin Third 97.9 3.1E-05 6.7E-10 46.5 5.0 34 19-52 41-74 (74)
42 PF09294 Interfer-bind: Interf 97.9 8.6E-05 1.9E-09 48.2 7.2 89 158-259 5-105 (106)
43 cd04971 Ig_TrKABC_d5 Fifth dom 97.9 9.3E-05 2E-09 45.2 6.9 36 16-51 44-79 (81)
44 cd05725 Ig3_Robo Third immunog 97.9 4.4E-05 9.6E-10 45.1 5.2 33 19-51 36-68 (69)
45 cd05876 Ig3_L1-CAM Third immun 97.9 3.1E-05 6.6E-10 46.1 4.5 35 18-52 36-70 (71)
46 cd05723 Ig4_Neogenin Fourth im 97.9 4.3E-05 9.3E-10 45.5 5.1 34 19-52 38-71 (71)
47 cd05744 Ig_Myotilin_C_like Imm 97.9 5.6E-05 1.2E-09 45.5 5.6 36 16-51 39-74 (75)
48 KOG4802|consensus 97.8 0.0002 4.4E-09 55.8 9.5 121 19-142 210-342 (516)
49 cd05863 Ig2_VEGFR-3 Second imm 97.8 4.9E-05 1.1E-09 44.5 4.9 38 15-52 28-65 (67)
50 cd04969 Ig5_Contactin_like Fif 97.8 4.4E-05 9.6E-10 45.7 4.8 34 19-52 40-73 (73)
51 cd04974 Ig3_FGFR Third immunog 97.8 2.9E-05 6.2E-10 48.7 4.1 36 17-52 54-89 (90)
52 cd05855 Ig_TrkB_d5 Fifth domai 97.8 5.4E-05 1.2E-09 45.9 4.9 35 17-51 43-77 (79)
53 cd05737 Ig_Myomesin_like_C C-t 97.8 9.3E-05 2E-09 46.6 6.2 37 15-51 55-91 (92)
54 cd05858 Ig3_FGFR-2 Third immun 97.8 4.2E-05 9.1E-10 48.0 4.4 36 17-52 54-89 (90)
55 cd05763 Ig_1 Subgroup of the i 97.8 7.5E-05 1.6E-09 45.0 5.2 34 19-52 41-74 (75)
56 PHA02826 IL-1 receptor-like pr 97.8 0.00068 1.5E-08 50.3 11.0 114 17-136 97-210 (227)
57 PF07679 I-set: Immunoglobulin 97.8 9.6E-05 2.1E-09 46.3 5.8 39 14-52 52-90 (90)
58 cd05746 Ig4_Peroxidasin Fourth 97.8 6.5E-05 1.4E-09 44.4 4.7 32 19-50 37-68 (69)
59 cd04975 Ig4_SCFR_like Fourth i 97.8 8.1E-05 1.8E-09 47.6 5.4 37 17-53 64-100 (101)
60 cd05851 Ig3_Contactin-1 Third 97.8 6.5E-05 1.4E-09 46.8 4.7 34 19-52 54-87 (88)
61 cd05765 Ig_3 Subgroup of the i 97.7 8.9E-05 1.9E-09 45.4 4.9 35 18-52 47-81 (81)
62 cd05730 Ig3_NCAM-1_like Third 97.7 0.00012 2.6E-09 46.4 5.5 37 17-53 57-93 (95)
63 cd05891 Ig_M-protein_C C-termi 97.7 0.00018 3.9E-09 45.3 6.2 37 15-51 55-91 (92)
64 cd05895 Ig_Pro_neuregulin-1 Im 97.7 0.00018 3.9E-09 43.4 5.7 36 14-49 40-75 (76)
65 cd05747 Ig5_Titin_like M5, fif 97.7 0.00017 3.6E-09 45.4 5.7 37 14-50 55-91 (92)
66 cd05750 Ig_Pro_neuregulin Immu 97.7 0.00016 3.4E-09 43.5 5.4 36 14-49 39-74 (75)
67 cd05743 Ig_Perlecan_D2_like Im 97.7 0.00011 2.4E-09 44.6 4.7 37 14-50 38-74 (78)
68 KOG4194|consensus 97.6 0.012 2.6E-07 49.1 16.9 125 17-148 573-703 (873)
69 cd05736 Ig2_Follistatin_like S 97.6 0.00017 3.6E-09 43.6 5.2 37 17-53 38-74 (76)
70 cd04972 Ig_TrkABC_d4 Fourth do 97.6 0.00017 3.6E-09 45.2 5.4 36 16-51 54-89 (90)
71 PF01108 Tissue_fac: Tissue fa 97.6 0.0003 6.4E-09 45.7 6.6 81 54-138 20-103 (107)
72 PHA02785 IL-beta-binding prote 97.6 0.02 4.4E-07 45.3 19.9 113 18-139 82-202 (326)
73 cd05867 Ig4_L1-CAM_like Fourth 97.6 0.00013 2.9E-09 44.0 4.6 34 19-52 42-75 (76)
74 cd04976 Ig2_VEGFR Second immun 97.6 0.00012 2.6E-09 43.5 4.3 35 18-52 35-69 (71)
75 cd05859 Ig4_PDGFR-alpha Fourth 97.6 0.00012 2.6E-09 46.8 4.5 37 17-53 64-100 (101)
76 cd05864 Ig2_VEGFR-2 Second imm 97.6 0.00012 2.5E-09 43.4 4.2 35 18-52 34-68 (70)
77 cd05731 Ig3_L1-CAM_like Third 97.6 0.0001 2.2E-09 43.8 3.9 36 17-52 35-70 (71)
78 cd05764 Ig_2 Subgroup of the i 97.6 0.00025 5.4E-09 42.5 5.7 33 19-51 41-73 (74)
79 cd05734 Ig7_DSCAM Seventh immu 97.6 0.0002 4.3E-09 43.6 5.2 32 19-50 45-77 (79)
80 cd04977 Ig1_NCAM-1_like First 97.6 0.00036 7.9E-09 43.9 6.5 38 14-51 53-91 (92)
81 cd04968 Ig3_Contactin_like Thi 97.6 0.00022 4.8E-09 44.4 5.0 35 18-52 53-87 (88)
82 cd05742 Ig1_VEGFR_like First i 97.6 0.00022 4.8E-09 44.0 5.0 37 16-52 47-83 (84)
83 cd04978 Ig4_L1-NrCAM_like Four 97.6 0.00017 3.7E-09 43.5 4.4 35 18-52 41-75 (76)
84 cd05868 Ig4_NrCAM Fourth immun 97.5 0.00017 3.6E-09 43.6 4.3 34 19-52 42-75 (76)
85 cd05740 Ig_CEACAM_D4 Fourth im 97.5 0.00021 4.5E-09 44.8 4.7 35 18-52 55-90 (91)
86 PF01108 Tissue_fac: Tissue fa 97.5 0.0014 3E-08 42.5 8.4 82 157-250 23-106 (107)
87 cd05857 Ig2_FGFR Second immuno 97.5 0.00025 5.5E-09 43.8 4.7 35 17-51 50-84 (85)
88 cd05856 Ig2_FGFRL1-like Second 97.5 0.00026 5.6E-09 43.4 4.6 35 17-51 47-81 (82)
89 cd05760 Ig2_PTK7 Second immuno 97.5 0.00026 5.7E-09 42.8 4.4 29 18-46 38-66 (77)
90 cd04973 Ig1_FGFR First immunog 97.5 0.00046 1E-08 42.0 5.4 33 19-51 46-78 (79)
91 cd05728 Ig4_Contactin-2-like F 97.4 0.00047 1E-08 42.6 5.5 33 19-51 52-84 (85)
92 cd05738 Ig2_RPTP_IIa_LAR_like 97.4 0.00049 1.1E-08 41.3 5.2 34 19-52 39-73 (74)
93 cd05861 Ig1_PDGFR-alphabeta Fr 97.4 0.00072 1.6E-08 41.7 5.9 37 16-52 44-82 (84)
94 cd05862 Ig1_VEGFR First immuno 97.3 0.00053 1.2E-08 42.5 4.6 38 16-53 48-85 (86)
95 cd05771 IgC_Tapasin_R Tapasin- 97.3 0.0019 4.1E-08 44.2 7.5 39 19-57 2-40 (139)
96 cd05724 Ig2_Robo Second immuno 97.3 0.00088 1.9E-08 41.4 5.4 32 19-50 52-84 (86)
97 COG4733 Phage-related protein, 97.2 0.0058 1.3E-07 52.5 10.5 127 112-252 658-786 (952)
98 cd05886 Ig1_Nectin-1_like Firs 97.1 0.0019 4E-08 41.1 5.6 36 17-52 62-98 (99)
99 cd05756 Ig1_IL1R_like First im 97.1 0.001 2.2E-08 42.0 4.3 34 18-51 60-93 (94)
100 KOG4194|consensus 97.0 0.011 2.4E-07 49.3 10.4 60 19-78 670-730 (873)
101 cd05714 Ig_CSPGs_LP Immunoglob 97.0 0.0028 6.1E-08 41.0 6.0 40 15-54 65-104 (106)
102 cd07701 Ig1_Necl-3 First (N-te 97.0 0.0032 6.9E-08 39.8 5.9 35 15-50 59-93 (95)
103 cd05900 Ig_Aggrecan Immunoglob 97.0 0.0036 7.7E-08 40.8 6.2 39 16-54 72-110 (112)
104 KOG4367|consensus 97.0 0.0012 2.7E-08 51.9 4.6 82 67-152 450-531 (699)
105 cd05713 Ig_MOG_like Immunoglob 96.9 0.0037 8E-08 39.9 5.9 37 16-52 63-99 (100)
106 cd05849 Ig1_Contactin-1 First 96.9 0.0042 9E-08 39.1 5.9 32 19-50 58-91 (93)
107 cd05877 Ig_LP_like Immunoglobu 96.9 0.0038 8.2E-08 40.4 5.7 39 16-54 66-104 (106)
108 PF09294 Interfer-bind: Interf 96.9 0.0072 1.6E-07 39.1 7.0 86 58-149 5-104 (106)
109 PHA02785 IL-beta-binding prote 96.9 0.088 1.9E-06 41.7 14.3 117 18-138 177-316 (326)
110 cd05729 Ig2_FGFR_like Second i 96.9 0.0031 6.8E-08 38.7 5.1 36 16-51 49-84 (85)
111 cd05717 Ig1_Necl-1-3_like Firs 96.9 0.0059 1.3E-07 38.6 6.2 36 15-51 59-94 (95)
112 cd05754 Ig3_Perlecan_like Thir 96.8 0.0017 3.8E-08 40.0 3.6 33 18-50 52-84 (85)
113 PF10179 DUF2369: Uncharacteri 96.8 0.15 3.3E-06 39.3 15.4 130 17-150 127-296 (300)
114 PF09067 EpoR_lig-bind: Erythr 96.8 0.0031 6.7E-08 40.3 4.6 84 54-138 6-94 (104)
115 cd05757 Ig2_IL1R_like Second i 96.8 0.0042 9.2E-08 38.9 5.1 33 18-50 52-84 (92)
116 cd07690 Ig1_CD4 First immunogl 96.8 0.0014 3E-08 41.2 2.8 40 3-43 51-90 (94)
117 cd05848 Ig1_Contactin-5 First 96.8 0.0055 1.2E-07 38.6 5.6 28 19-46 59-87 (94)
118 cd05882 Ig1_Necl-1 First (N-te 96.8 0.0038 8.3E-08 39.4 4.8 24 16-39 60-83 (95)
119 cd05878 Ig_Aggrecan_like Immun 96.8 0.0068 1.5E-07 39.5 6.0 40 15-54 69-108 (110)
120 cd05775 Ig_SLAM-CD84_like_N N- 96.7 0.0079 1.7E-07 38.2 6.1 40 3-44 48-87 (97)
121 cd05850 Ig1_Contactin-2 First 96.7 0.0085 1.8E-07 37.8 6.2 28 19-46 59-87 (94)
122 cd05871 Ig_Semaphorin_classIII 96.7 0.0085 1.9E-07 37.5 5.9 35 19-53 54-89 (91)
123 cd05741 Ig_CEACAM_D1_like Firs 96.7 0.0058 1.3E-07 38.3 5.2 38 4-44 46-83 (92)
124 cd05739 Ig3_RPTP_IIa_LAR_like 96.7 0.0042 9.2E-08 36.6 4.2 31 18-50 38-68 (69)
125 cd05902 Ig_Neurocan Immunoglob 96.7 0.0072 1.6E-07 39.3 5.6 39 16-54 70-108 (110)
126 cd05901 Ig_Versican Immunoglob 96.6 0.012 2.7E-07 38.4 6.6 38 17-54 78-115 (117)
127 COG3401 Fibronectin type 3 dom 96.6 0.21 4.6E-06 38.7 15.2 199 23-250 129-333 (343)
128 cd05722 Ig1_Neogenin First imm 96.6 0.0089 1.9E-07 37.7 5.8 33 19-51 55-94 (95)
129 cd05733 Ig6_L1-CAM_like Sixth 96.6 0.005 1.1E-07 37.2 4.3 29 18-46 39-71 (77)
130 cd05774 Ig_CEACAM_D1 First imm 96.6 0.0068 1.5E-07 39.0 4.9 35 5-42 60-94 (105)
131 cd05887 Ig1_Nectin-3_like Firs 96.5 0.011 2.3E-07 37.4 5.6 37 16-52 58-95 (96)
132 cd05753 Ig2_FcgammaR_like Seco 96.5 0.0044 9.6E-08 38.0 3.7 30 17-46 47-76 (83)
133 cd05881 Ig1_Necl-2 First (N-te 96.5 0.0091 2E-07 37.6 4.9 35 2-39 49-83 (95)
134 cd05888 Ig1_Nectin-4_like Frst 96.4 0.017 3.7E-07 36.9 6.3 37 16-52 62-99 (100)
135 cd05718 Ig1_PVR_like First imm 96.4 0.02 4.3E-07 36.3 6.5 37 16-52 60-97 (98)
136 cd07693 Ig1_Robo First immunog 96.4 0.017 3.7E-07 36.6 6.1 40 13-52 57-99 (100)
137 cd07702 Ig2_VEGFR-1 Second imm 96.4 0.0072 1.6E-07 35.9 3.9 28 19-46 37-64 (72)
138 PLN02533 probable purple acid 96.2 0.14 3.1E-06 42.2 11.5 93 155-262 40-136 (427)
139 COG3401 Fibronectin type 3 dom 96.1 0.25 5.4E-06 38.3 11.7 164 68-253 82-246 (343)
140 cd05874 Ig6_NrCAM Sixth immuno 96.1 0.015 3.3E-07 35.0 4.5 28 19-46 40-71 (77)
141 cd05875 Ig6_hNeurofascin_like 96.1 0.02 4.3E-07 34.5 4.9 29 18-46 39-71 (77)
142 cd04967 Ig1_Contactin First Ig 96.1 0.01 2.2E-07 37.1 3.7 28 19-46 59-87 (91)
143 cd05860 Ig4_SCFR Fourth immuno 96.0 0.03 6.4E-07 35.5 5.5 38 16-53 63-100 (101)
144 smart00408 IGc2 Immunoglobulin 95.9 0.013 2.8E-07 33.2 3.5 26 17-42 38-63 (63)
145 cd04979 Ig_Semaphorin_C Immuno 95.9 0.024 5.2E-07 35.2 4.8 35 19-53 52-87 (89)
146 smart00410 IG_like Immunoglobu 95.9 0.064 1.4E-06 32.4 6.9 35 17-51 50-84 (86)
147 smart00409 IG Immunoglobulin. 95.9 0.064 1.4E-06 32.4 6.9 35 17-51 50-84 (86)
148 cd05880 Ig_EVA1 Immunoglobulin 95.9 0.031 6.7E-07 36.7 5.5 28 16-43 77-104 (115)
149 cd05715 Ig_P0-like Immunoglobu 95.8 0.038 8.3E-07 36.3 5.7 26 17-42 79-104 (116)
150 cd05749 Ig2_Tyro3_like Second 95.7 0.036 7.9E-07 33.8 5.0 29 16-46 47-75 (81)
151 KOG4806|consensus 95.7 0.72 1.6E-05 36.1 15.7 136 118-260 288-447 (454)
152 cd05897 Ig2_IL1R2_like Second 95.7 0.035 7.6E-07 34.9 4.9 28 18-45 55-82 (95)
153 PF13927 Ig_3: Immunoglobulin 95.6 0.027 5.8E-07 33.3 4.2 32 8-39 44-75 (75)
154 cd04983 IgV_TCR_alpha_like Imm 95.6 0.026 5.7E-07 36.6 4.4 37 3-41 57-93 (109)
155 cd05752 Ig1_FcgammaR_like Frst 95.5 0.024 5.1E-07 34.3 3.6 23 17-40 46-68 (78)
156 cd05889 Ig1_DNAM-1_like First 95.5 0.065 1.4E-06 33.8 5.7 35 16-50 58-93 (96)
157 cd05846 Ig1_MRC-OX-2_like Firs 95.3 0.09 2E-06 33.3 6.0 38 15-52 58-96 (97)
158 cd05879 Ig_P0 Immunoglobulin ( 95.3 0.087 1.9E-06 34.6 5.9 26 17-42 79-104 (116)
159 KOG3632|consensus 95.1 0.024 5.1E-07 49.8 3.6 172 64-265 586-769 (1335)
160 cd05896 Ig1_IL1RAPL-1_like Fir 95.0 0.1 2.3E-06 33.2 5.4 33 19-51 71-103 (104)
161 cd05873 Ig_Sema4D_like Immunog 95.0 0.075 1.6E-06 32.9 4.7 22 19-40 49-70 (87)
162 KOG4228|consensus 95.0 0.31 6.7E-06 44.0 9.9 202 32-261 1-254 (1087)
163 PHA03376 BARF1; Provisional 94.8 0.19 4.2E-06 35.6 6.7 37 5-41 74-110 (221)
164 PF09067 EpoR_lig-bind: Erythr 94.8 0.19 4.2E-06 32.2 6.3 81 155-248 7-95 (104)
165 cd05727 Ig2_Contactin-2-like S 94.5 0.064 1.4E-06 33.8 3.5 26 19-44 61-86 (96)
166 cd00099 IgV Immunoglobulin var 94.4 0.053 1.2E-06 34.8 3.2 27 16-42 65-91 (105)
167 cd04984 IgV_L_lambda Immunoglo 94.4 0.084 1.8E-06 33.5 4.0 33 3-39 52-84 (98)
168 cd05845 Ig2_L1-CAM_like Second 94.1 0.089 1.9E-06 33.1 3.6 25 19-43 59-84 (95)
169 PF00047 ig: Immunoglobulin do 94.0 0.047 1E-06 31.3 2.1 19 19-37 46-64 (64)
170 cd04980 IgV_L_kappa Immunoglob 93.7 0.11 2.3E-06 33.6 3.6 27 14-40 67-93 (106)
171 PF07686 V-set: Immunoglobulin 93.7 0.074 1.6E-06 34.5 2.9 26 15-40 76-101 (114)
172 smart00406 IGv Immunoglobulin 93.7 0.086 1.9E-06 31.7 3.0 22 15-36 59-80 (81)
173 PF09240 IL6Ra-bind: Interleuk 93.6 1.2 2.5E-05 28.3 9.5 79 59-138 2-85 (99)
174 PF13895 Ig_2: Immunoglobulin 93.6 0.16 3.5E-06 30.4 4.1 23 20-42 47-69 (80)
175 cd05872 Ig_Sema4B_like Immunog 93.5 0.38 8.2E-06 29.6 5.5 26 20-46 49-74 (85)
176 cd05751 Ig1_LILRB1_like First 93.4 0.17 3.6E-06 31.6 4.0 26 15-40 50-75 (91)
177 cd05899 IgV_TCR_beta Immunoglo 93.4 0.15 3.2E-06 33.1 3.9 26 16-41 70-95 (110)
178 KOG4152|consensus 93.4 0.1 2.3E-06 42.8 3.6 33 228-260 652-684 (830)
179 cd04982 IgV_TCR_gamma Immunogl 93.1 0.2 4.2E-06 32.9 4.2 24 16-39 75-98 (116)
180 KOG0613|consensus 92.7 1.5 3.2E-05 40.6 10.0 214 20-252 104-320 (1205)
181 cd05716 Ig_pIgR Immunoglobulin 92.3 0.21 4.6E-06 31.6 3.4 27 14-40 60-86 (98)
182 cd07706 IgV_TCR_delta Immunogl 92.3 0.27 5.8E-06 32.3 4.0 35 3-39 59-93 (116)
183 cd07700 IgV_CD8_beta Immunoglo 92.0 0.3 6.5E-06 31.5 3.9 27 12-38 66-92 (107)
184 cd05720 Ig_CD8_alpha Immunoglo 91.9 0.21 4.6E-06 32.1 3.1 26 14-39 65-90 (104)
185 cd05712 Ig_Siglec_N Immunoglob 91.9 0.39 8.4E-06 31.7 4.4 27 14-40 76-102 (119)
186 PHA02633 hypothetical protein; 91.3 0.98 2.1E-05 25.6 4.8 40 16-55 16-55 (63)
187 PF07495 Y_Y_Y: Y_Y_Y domain; 90.7 0.58 1.3E-05 27.0 3.9 26 224-250 30-55 (66)
188 PLN02533 probable purple acid 90.6 8.5 0.00018 32.0 11.7 87 55-152 40-135 (427)
189 PHA02987 Ig domain OX-2-like p 90.2 2.3 5E-05 30.3 7.0 41 14-54 81-123 (189)
190 KOG4806|consensus 89.9 7.7 0.00017 30.7 10.0 115 23-140 289-436 (454)
191 TIGR00868 hCaCC calcium-activa 89.4 3 6.5E-05 37.7 8.6 96 155-253 755-860 (863)
192 cd05885 Ig2_Necl-4 Second immu 89.0 2 4.3E-05 26.1 5.3 29 17-45 42-70 (80)
193 PF07495 Y_Y_Y: Y_Y_Y domain; 88.8 2.3 5E-05 24.4 5.4 24 115-139 30-53 (66)
194 cd05759 Ig2_KIRREL3-like Secon 87.9 2 4.3E-05 26.0 5.0 28 17-44 45-72 (82)
195 PF09240 IL6Ra-bind: Interleuk 87.5 5.4 0.00012 25.2 9.6 83 159-250 2-88 (99)
196 PF11465 Receptor_2B4: Natural 86.4 2.4 5.3E-05 27.1 4.6 28 19-46 72-99 (108)
197 cd05760 Ig2_PTK7 Second immuno 86.1 5.3 0.00011 23.8 6.6 27 113-139 37-63 (77)
198 KOG3515|consensus 85.6 8.3 0.00018 34.2 8.8 76 118-202 658-733 (741)
199 KOG1948|consensus 85.4 28 0.00062 31.5 14.6 23 113-135 945-967 (1165)
200 PF13754 Big_3_4: Bacterial Ig 85.3 4.6 9.9E-05 22.3 5.1 34 224-258 15-48 (54)
201 KOG3515|consensus 84.9 1.4 3E-05 38.7 4.0 76 21-97 657-732 (741)
202 PHA02982 hypothetical protein; 84.9 1.8 3.9E-05 31.3 3.9 75 6-95 88-162 (251)
203 KOG1378|consensus 84.7 14 0.0003 30.7 9.3 35 222-261 108-142 (452)
204 cd00096 Ig Immunoglobulin doma 84.4 2.3 5E-05 23.8 3.9 27 15-41 40-66 (74)
205 PF09423 PhoD: PhoD-like phosp 84.2 4.9 0.00011 33.7 7.0 38 222-262 63-100 (453)
206 KOG1225|consensus 83.4 6.7 0.00015 33.2 7.2 114 107-240 411-524 (525)
207 cd05711 Ig_FcalphaRI Immunoglo 83.4 1.9 4E-05 27.1 3.3 26 14-39 51-76 (94)
208 cd05735 Ig8_DSCAM Eight immuno 83.4 8.2 0.00018 23.7 8.4 35 114-148 47-81 (88)
209 cd05893 Ig_Palladin_C C-termin 83.0 3.7 8E-05 24.4 4.3 26 115-140 42-67 (75)
210 TIGR00868 hCaCC calcium-activa 83.0 38 0.00083 31.1 13.5 39 57-96 757-797 (863)
211 COG4733 Phage-related protein, 82.8 18 0.00038 32.5 9.5 121 17-141 659-784 (952)
212 cd05730 Ig3_NCAM-1_like Third 81.6 10 0.00022 23.5 8.2 29 112-140 56-84 (95)
213 cd04981 IgV_H Immunoglobulin ( 81.1 2.8 6.2E-05 27.5 3.7 25 15-39 73-97 (117)
214 cd05892 Ig_Myotilin_C C-termin 80.6 6 0.00013 23.5 4.6 27 114-140 41-67 (75)
215 TIGR00864 PCC polycystin catio 80.5 81 0.0017 33.2 16.5 26 234-259 1840-1865(2740)
216 cd05748 Ig_Titin_like Immunogl 79.2 10 0.00022 22.1 5.5 28 112-139 38-65 (74)
217 KOG0613|consensus 79.0 18 0.00039 34.0 8.7 129 115-253 292-423 (1205)
218 cd07694 Ig2_CD4 Second immunog 78.6 7.9 0.00017 23.9 4.6 24 17-40 50-73 (88)
219 PF02010 REJ: REJ domain; Int 77.1 3.9 8.4E-05 34.1 4.1 40 229-270 268-307 (440)
220 cd04978 Ig4_L1-NrCAM_like Four 77.0 11 0.00024 22.0 5.1 29 112-140 39-67 (76)
221 cd05867 Ig4_L1-CAM_like Fourth 75.8 11 0.00024 22.2 4.9 27 113-139 40-66 (76)
222 cd05868 Ig4_NrCAM Fourth immun 74.9 8.8 0.00019 22.7 4.3 27 114-140 41-67 (76)
223 cd05744 Ig_Myotilin_C_like Imm 74.5 13 0.00028 21.9 4.9 26 115-140 42-67 (75)
224 PHA02579 7 baseplate wedge sub 73.8 25 0.00055 31.3 7.8 92 158-259 7-102 (1030)
225 cd04975 Ig4_SCFR_like Fourth i 70.3 15 0.00032 23.4 4.7 27 114-140 65-91 (101)
226 PF11344 DUF3146: Protein of u 69.2 3.8 8.2E-05 24.2 1.5 15 229-243 66-80 (80)
227 TIGR00864 PCC polycystin catio 68.9 1.6E+02 0.0035 31.2 19.4 32 116-148 1662-1693(2740)
228 cd05894 Ig_C5_MyBP-C C5 immuno 68.4 24 0.00051 21.5 5.2 27 113-139 51-77 (86)
229 cd05851 Ig3_Contactin-1 Third 66.6 27 0.00059 21.3 6.8 28 113-140 52-79 (88)
230 cd05870 Ig5_NCAM-2 Fifth immun 66.2 30 0.00064 21.6 8.2 28 113-140 63-90 (98)
231 cd04972 Ig_TrkABC_d4 Fourth do 64.2 31 0.00066 21.1 7.0 28 113-140 55-82 (90)
232 TIGR03000 plancto_dom_1 Planct 62.7 16 0.00035 21.8 3.3 26 222-247 28-54 (75)
233 cd05762 Ig8_MLCK Eighth immuno 62.1 37 0.0008 21.3 9.3 37 112-148 54-90 (98)
234 cd05721 IgV_CTLA-4 Immunoglobu 62.0 18 0.00039 23.7 3.8 26 13-38 69-94 (115)
235 cd05725 Ig3_Robo Third immunog 61.7 28 0.00061 19.9 5.3 26 114-139 35-60 (69)
236 cd05854 Ig6_Contactin-2 Sixth 61.4 14 0.0003 22.5 3.2 31 114-144 47-77 (85)
237 cd05740 Ig_CEACAM_D4 Fourth im 59.9 39 0.00084 20.9 7.0 28 112-139 53-80 (91)
238 PF08329 ChitinaseA_N: Chitina 59.1 53 0.0011 22.3 5.7 28 230-258 79-106 (133)
239 cd05763 Ig_1 Subgroup of the i 57.8 36 0.00078 19.8 6.5 26 114-139 40-65 (75)
240 cd05751 Ig1_LILRB1_like First 57.5 43 0.00093 20.6 7.7 73 68-148 15-88 (91)
241 cd04970 Ig6_Contactin_like Six 57.0 41 0.00088 20.2 6.8 28 113-140 46-73 (85)
242 cd05859 Ig4_PDGFR-alpha Fourth 56.4 32 0.00069 21.9 4.3 27 114-140 65-91 (101)
243 cd05852 Ig5_Contactin-1 Fifth 55.3 41 0.00088 19.7 6.8 28 114-141 39-66 (73)
244 cd04974 Ig3_FGFR Third immunog 55.3 32 0.00069 21.1 4.2 31 114-144 55-85 (90)
245 PF07353 Uroplakin_II: Uroplak 54.7 25 0.00054 24.4 3.6 23 223-245 102-124 (184)
246 PF10342 GPI-anchored: Ser-Thr 54.5 48 0.001 20.3 8.7 66 171-242 12-78 (93)
247 cd05738 Ig2_RPTP_IIa_LAR_like 54.4 42 0.00091 19.6 5.6 26 114-139 38-63 (74)
248 cd04971 Ig_TrKABC_d5 Fifth dom 53.8 28 0.0006 21.0 3.6 27 114-140 46-72 (81)
249 cd05858 Ig3_FGFR-2 Third immun 52.3 22 0.00047 21.8 3.0 30 114-143 55-84 (90)
250 cd05855 Ig_TrkB_d5 Fifth domai 52.2 39 0.00085 20.3 4.0 27 114-140 44-70 (79)
251 PF14292 SusE: SusE outer memb 51.6 68 0.0015 21.2 9.7 34 68-101 43-77 (122)
252 PF07354 Sp38: Zona-pellucida- 51.6 22 0.00048 27.1 3.3 28 10-40 32-59 (271)
253 cd05743 Ig_Perlecan_D2_like Im 49.4 53 0.0012 19.3 6.5 28 113-140 41-68 (78)
254 COG3979 Uncharacterized protei 49.0 52 0.0011 23.7 4.8 82 161-261 10-92 (181)
255 PF04775 Bile_Hydr_Trans: Acyl 48.0 26 0.00057 23.4 3.1 37 223-260 5-41 (126)
256 PHA03283 envelope glycoprotein 47.7 57 0.0012 27.7 5.3 39 16-54 132-170 (542)
257 cd05732 Ig5_NCAM-1_like Fifth 45.6 70 0.0015 19.6 7.1 27 114-140 62-88 (96)
258 cd00098 IgC Immunoglobulin Con 44.0 36 0.00078 20.9 3.1 24 19-42 63-86 (95)
259 cd07692 Ig_CD3_epsilon Immunog 43.9 41 0.00089 19.5 2.9 23 16-39 33-55 (65)
260 cd02848 Chitinase_N_term Chiti 40.4 70 0.0015 20.7 3.9 27 230-257 76-102 (106)
261 cd05737 Ig_Myomesin_like_C C-t 39.2 91 0.002 19.1 7.0 27 113-139 57-83 (92)
262 PHA03282 envelope glycoprotein 38.5 1.2E+02 0.0027 25.5 5.8 20 19-38 125-144 (540)
263 cd07691 Ig_CD3_gamma_delta Imm 36.9 91 0.002 18.4 3.7 23 17-39 32-54 (69)
264 cd05891 Ig_M-protein_C C-termi 36.5 1E+02 0.0022 18.9 7.2 27 114-140 58-84 (92)
265 PHA02579 7 baseplate wedge sub 36.0 1.9E+02 0.0042 26.3 6.8 68 60-136 9-87 (1030)
266 PF09423 PhoD: PhoD-like phosp 35.7 70 0.0015 27.0 4.4 35 114-151 64-98 (453)
267 cd05761 Ig2_Necl-1-4_like Seco 35.5 92 0.002 18.6 3.9 16 28-43 55-70 (82)
268 PF13750 Big_3_3: Bacterial Ig 35.5 1.6E+02 0.0034 20.7 10.9 23 227-249 116-138 (158)
269 cd05736 Ig2_Follistatin_like S 35.2 93 0.002 18.0 7.4 30 112-141 37-66 (76)
270 PF10333 Pga1: GPI-Mannosyltra 32.6 67 0.0014 23.2 3.2 21 221-241 64-84 (180)
271 TIGR02695 azurin azurin. Azuri 32.2 1E+02 0.0022 20.7 3.7 35 4-38 77-113 (125)
272 KOG3834|consensus 31.5 1.4E+02 0.0031 24.8 5.2 71 161-240 67-137 (462)
273 cd04968 Ig3_Contactin_like Thi 31.2 1.2E+02 0.0027 18.2 8.3 28 113-140 52-79 (88)
274 cd05857 Ig2_FGFR Second immuno 31.1 1.2E+02 0.0026 18.0 7.1 26 114-139 51-76 (85)
275 cd07705 Ig2_Necl-1 Second immu 30.8 1.3E+02 0.0027 18.2 4.5 24 19-42 47-70 (83)
276 cd05884 Ig2_Necl-3 Second immu 30.8 1.3E+02 0.0028 18.2 4.5 23 19-41 47-69 (83)
277 cd05883 Ig2_Necl-2 Second immu 30.4 82 0.0018 19.2 3.0 26 16-41 42-67 (82)
278 PHA03286 envelope glycoprotein 28.9 3.6E+02 0.0078 22.8 7.9 38 15-52 124-162 (492)
279 COG3540 PhoD Phosphodiesterase 28.3 2E+02 0.0043 24.5 5.5 36 222-262 100-135 (522)
280 PF08204 V-set_CD47: CD47 immu 28.2 74 0.0016 21.5 2.7 32 19-51 87-118 (130)
281 cd05755 Ig2_ICAM-1_like Second 26.8 1.2E+02 0.0027 19.3 3.5 26 17-43 61-87 (100)
282 PF15417 DUF4624: Domain of un 25.5 94 0.002 20.2 2.6 24 220-243 86-109 (132)
283 PF05566 Pox_vIL-18BP: Orthopo 25.3 88 0.0019 20.2 2.5 30 19-48 94-123 (126)
284 KOG1225|consensus 25.0 1.9E+02 0.0041 25.1 5.1 109 15-131 415-524 (525)
285 KOG4228|consensus 24.3 3E+02 0.0066 26.3 6.4 80 65-150 173-252 (1087)
286 PF12245 Big_3_2: Bacterial Ig 24.3 1.4E+02 0.0031 16.7 3.3 20 233-252 22-41 (60)
287 PF00907 T-box: T-box; InterP 23.6 95 0.0021 22.4 2.8 23 223-245 33-55 (184)
288 PF01688 Herpes_gI: Alphaherpe 23.6 2.1E+02 0.0045 20.3 4.2 27 15-41 121-147 (161)
289 cd05861 Ig1_PDGFR-alphabeta Fr 22.5 1.9E+02 0.0041 17.4 8.9 26 113-138 45-70 (84)
290 PF05345 He_PIG: Putative Ig d 22.4 1.2E+02 0.0026 16.3 2.4 13 235-247 37-49 (49)
291 PF14299 PP2: Phloem protein 2 22.3 2.8E+02 0.006 19.4 4.8 24 224-247 50-73 (154)
292 KOG4680|consensus 21.8 1.9E+02 0.0042 19.8 3.6 26 223-248 108-133 (153)
293 smart00407 IGc1 Immunoglobulin 21.7 1.7E+02 0.0037 17.0 3.3 12 28-39 58-69 (75)
294 PF14250 AbrB-like: AbrB-like 21.5 89 0.0019 18.4 1.8 39 187-240 25-63 (71)
295 PF11811 DUF3331: Domain of un 21.1 2E+02 0.0044 18.3 3.4 23 160-183 16-38 (96)
296 PF14509 GH97_C: Glycosyl-hydr 20.4 2.5E+02 0.0054 18.0 4.0 51 189-245 12-64 (103)
No 1
>KOG4221|consensus
Probab=99.97 E-value=9.9e-30 Score=213.17 Aligned_cols=231 Identities=26% Similarity=0.416 Sum_probs=202.3
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE 97 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~ 97 (273)
.+..+.++.+..-|.|+|.|.|..|+..++..+.|..+|..|..+.........+.+.|.+|.-+++++.+|.+.+...+
T Consensus 483 ~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~ 562 (1381)
T KOG4221|consen 483 IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDD 562 (1381)
T ss_pred eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCC
Confidence 67889999999999999999999999999999999999987766777788889999999999888999999999999873
Q ss_pred CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEE
Q psy6638 98 EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIK 177 (273)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~ 177 (273)
.. ....+..+.+.++|.+|++.+.|.|+|.|.|..|.|..+..+.+.+..+.|..||.++++.. .++++|.|+
T Consensus 563 ~~-----~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev--~sStsVrVs 635 (1381)
T KOG4221|consen 563 TG-----KELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEV--VSSTSVRVS 635 (1381)
T ss_pred CC-----ceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEe--cCCCeEEEE
Confidence 21 22355567789999999999999999999999999999999999999999999999999998 899999999
Q ss_pred EeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEE
Q psy6638 178 WKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257 (273)
Q Consensus 178 W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~ 257 (273)
|.+|.....+|.+.+|+|+|+....+.. ............+.+.+|+|++.|.|+|.|.+..|.|++|++..+
T Consensus 636 W~pP~~~t~ng~itgYkIRy~~~~~~~~-------~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~a 708 (1381)
T KOG4221|consen 636 WLPPPSETQNGQITGYKIRYRKLSREDE-------VNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSA 708 (1381)
T ss_pred ccCCCcccccceEEEEEEEecccCcccc-------cceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceec
Confidence 9999998889999999999997654321 111223334678899999999999999999999999999999999
Q ss_pred EcCCC
Q psy6638 258 RTNEG 262 (273)
Q Consensus 258 ~t~~~ 262 (273)
.|+..
T Consensus 709 eT~~~ 713 (1381)
T KOG4221|consen 709 ETPES 713 (1381)
T ss_pred cCccc
Confidence 99754
No 2
>KOG3513|consensus
Probab=99.96 E-value=1.5e-27 Score=200.45 Aligned_cols=237 Identities=30% Similarity=0.517 Sum_probs=198.6
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC-
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS- 96 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~- 96 (273)
..|.|.++...|.|.|.|.|...+-+..+.+.+.+.++|.||.++.+.......+.|+|.+..+.+++|..|.|+.+..
T Consensus 577 g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~ 656 (1051)
T KOG3513|consen 577 GRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPF 656 (1051)
T ss_pred cceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCC
Confidence 4699999999999999999999888888889999999999999999999999999999999888778999999999885
Q ss_pred CCCCCCccceEEecCCc---cEEEecCCCCCCeEEEEEEEeCCCCCCCCCcce-EEEecCCCCCCCCeeEEecCCccCCc
Q psy6638 97 EEMWPTQPLKIIVPGSQ---TSATLQPLLPATQYQVRLLAENPLGMSETGAEL-QASTLEEAPNGAPREVTSDPGVVDPT 172 (273)
Q Consensus 97 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~-~~~~~~~~p~~~p~~~~~~~~~~~~~ 172 (273)
...|.... .++... .+.++.+|.|...|+|||.|.|..|.|.+|.+. ..+|.+++|...|.++.... ...+
T Consensus 657 ~~~W~~v~---~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g--~~~~ 731 (1051)
T KOG3513|consen 657 PGKWKAVT---TVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGG--GSPT 731 (1051)
T ss_pred CCcceEee---ECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccC--CCCc
Confidence 45787443 222222 246678899999999999999999999988765 77888899999999999988 7899
Q ss_pred eEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEE--cCCCCccceEEEEEEEecCCCcCC
Q psy6638 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR--IPGLTPYTKYAIVVRGYNSVGKGP 250 (273)
Q Consensus 173 ~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~L~p~~~Y~~~v~a~n~~g~~~ 250 (273)
.+.|.|+|......||+..+|.|.|+..+... .|....+.......+. .....|.+.|+++|+|+|..|.|+
T Consensus 732 eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~------~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp 805 (1051)
T KOG3513|consen 732 ELVITWEPLPEEEQNGPGFGYRVSWRPQGADK------EWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGP 805 (1051)
T ss_pred eEEEEeccCCHHHccCCCceEEEEEEeCCCCc------ccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCC
Confidence 99999999988778999999999999988752 1233333333233444 444667999999999999999999
Q ss_pred CCccEEEEcCCCCCc
Q psy6638 251 FSEPFIARTNEGDFL 265 (273)
Q Consensus 251 ~s~~~~~~t~~~~P~ 265 (273)
.|+.+.+.+.++.|.
T Consensus 806 ~s~~~v~~S~Ed~P~ 820 (1051)
T KOG3513|consen 806 ESQVTVGYSGEDEPP 820 (1051)
T ss_pred CCceEEEEcCCCCCC
Confidence 999999999888764
No 3
>KOG3513|consensus
Probab=99.93 E-value=1.2e-23 Score=177.16 Aligned_cols=235 Identities=25% Similarity=0.354 Sum_probs=189.0
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEE-EEE---ecCCC-CCcceEEEEeeccEEEEEEeCCC--CCCccceEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQ-LLV---QETPE-APKNIRITEESSRSLQISWTAPY--SGNTAITQYII 91 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~-~~~---~~~P~-~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~v 91 (273)
+-.+.+|.|-..|.|+++|.|..|.+..+.. -.+ ...|. .|.++.......+.+.|.|++-. ..+++-.+|.|
T Consensus 675 sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~V 754 (1051)
T KOG3513|consen 675 SATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRV 754 (1051)
T ss_pred ceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEE
Confidence 4667899999999999999999998876332 222 45554 78888888888899999999754 35678889999
Q ss_pred EEEeCCC--CCCCccceEEecCCccE--EEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCC
Q psy6638 92 QYKSSEE--MWPTQPLKIIVPGSQTS--ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG 167 (273)
Q Consensus 92 ~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~ 167 (273)
.|+..+. .|... ...+..... +..+...+.+.|.+.|+|.|..|.|..+....+...++.|+.+|..+.+..
T Consensus 755 swr~~g~~~~W~~~---~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~- 830 (1051)
T KOG3513|consen 755 SWRPQGADKEWKEV---IVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKP- 830 (1051)
T ss_pred EEEeCCCCccccee---EecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeec-
Confidence 9999763 67732 222222233 334567789999999999999999999998999999999999999999988
Q ss_pred ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCC
Q psy6638 168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG 247 (273)
Q Consensus 168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g 247 (273)
.+.+.+.|+|+++.. .+|.+++|.|+|+..+...... ....+. ...++..|.||++.+.|.|.|+|.|.+|
T Consensus 831 -~s~s~~~v~W~~~~~--~nG~l~gY~v~Y~~~~~~~~~~-----~~~~i~-~~~~~~~ltgL~~~T~Y~~~vrA~nsaG 901 (1051)
T KOG3513|consen 831 -LSSSEVNLSWKPPLW--DNGKLTGYEVKYWKINEKEGSL-----SRVQIA-GNRTSWRLTGLEPNTKYRFYVRAYTSAG 901 (1051)
T ss_pred -ccCceEEEEecCcCc--cCCccceeEEEEEEcCCCcccc-----cceeec-CCcceEeeeCCCCCceEEEEEEEecCCC
Confidence 899999999999976 4799999999999987653221 122222 4568999999999999999999999999
Q ss_pred cCCCCccEEEEcCCCCCcc
Q psy6638 248 KGPFSEPFIARTNEGDFLF 266 (273)
Q Consensus 248 ~~~~s~~~~~~t~~~~P~~ 266 (273)
.|+.|..+...|.+.+|+.
T Consensus 902 ~Gp~s~~~~~tt~k~pPs~ 920 (1051)
T KOG3513|consen 902 GGPASSEENVTTKKAPPSQ 920 (1051)
T ss_pred CCCCccceeccccCCCCcc
Confidence 9999999999999998886
No 4
>KOG4221|consensus
Probab=99.93 E-value=9.6e-24 Score=177.72 Aligned_cols=228 Identities=30% Similarity=0.439 Sum_probs=186.4
Q ss_pred EEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec---------CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE---------TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYI 90 (273)
Q Consensus 20 l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~---------~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~ 90 (273)
|.|..+...|.|.|.|.+.|..|.....+.+.+.. .|..|..+.+.......+.++|.+|....+.+..|.
T Consensus 383 lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~ 462 (1381)
T KOG4221|consen 383 LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYT 462 (1381)
T ss_pred cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEE
Confidence 99999999999999999999999998877764432 355777777777788899999998887778899999
Q ss_pred EEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccC
Q psy6638 91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD 170 (273)
Q Consensus 91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~ 170 (273)
+.++.....|.+ ............+.+|.+.+.|.|+|.|.|..|.+..+.++.+.+.+.. ++. +.... .+
T Consensus 463 v~~~~~~~~rer---~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEg---p~~-~~a~a--ts 533 (1381)
T KOG4221|consen 463 VFYKVEGDVRER---LQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEG---PVQ-LQAYA--TS 533 (1381)
T ss_pred EEEecCCchhhh---heeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCC---Ccc-ccccc--cC
Confidence 999998777662 2222233367788999999999999999999999999999999886652 333 66666 78
Q ss_pred CceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638 171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250 (273)
Q Consensus 171 ~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~ 250 (273)
+.++.+.|.+|.. .|++|++|.+.|...+.. .+... ..+...++|.+|++.+.|.|+|.|+|..|.|.
T Consensus 534 ~~ti~v~WepP~~--~n~~I~~yk~~ys~~~~~-------~~~~~---~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~ 601 (1381)
T KOG4221|consen 534 PTTILVTWEPPPF--GNGPITGYKLFYSEDDTG-------KELRV---ENNATEYTINGLEKYTEYSIRVVAYNSAGSGV 601 (1381)
T ss_pred cceEEEEecCCCC--CCCCceEEEEEEEcCCCC-------ceEEE---ecCccEEEeecCCCccceEEEEEEecCCCCCC
Confidence 9999999999986 589999999999987332 11111 22357899999999999999999999999999
Q ss_pred CCccEEEEcCCCCCcccc
Q psy6638 251 FSEPFIARTNEGDFLFLF 268 (273)
Q Consensus 251 ~s~~~~~~t~~~~P~~~~ 268 (273)
.|..+.+.|..++|++..
T Consensus 602 sS~~i~V~Tlsd~PsaPP 619 (1381)
T KOG4221|consen 602 SSADITVRTLSDVPSAPP 619 (1381)
T ss_pred CCCceEEEeccCCCCCCC
Confidence 999999999999887543
No 5
>KOG0196|consensus
Probab=99.90 E-value=2.7e-22 Score=163.19 Aligned_cols=221 Identities=24% Similarity=0.328 Sum_probs=164.6
Q ss_pred CCCEEEEEEEEcCCCCcee-EEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCCCC-CCc-
Q psy6638 28 QDSGTLSCLATNYHGTAEM-TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMW-PTQ- 103 (273)
Q Consensus 28 ~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~~~-~~~- 103 (273)
...|.-.|.+.+++.+... ........+|++|.++... ++.+++.|.|.+|.+ ++..-..|.+.++.....- .+.
T Consensus 303 ~~ega~~C~C~~gyyRA~~Dp~~mpCT~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~ 381 (996)
T KOG0196|consen 303 SSEGATSCTCENGYYRADSDPPSMPCTRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEP 381 (996)
T ss_pred CCCCCCcccccCCcccCCCCCCCCCCCCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCcccc
Confidence 3456667888887766655 5556678899999998544 889999999999975 3334457888777654211 111
Q ss_pred --cceEEec----CCccEEEecCCCCCCeEEEEEEEeCCCCCC----CCCcceEEEecCCCCCCCCeeEEecCCccCCce
Q psy6638 104 --PLKIIVP----GSQTSATLQPLLPATQYQVRLLAENPLGMS----ETGAELQASTLEEAPNGAPREVTSDPGVVDPTE 173 (273)
Q Consensus 104 --~~~~~~~----~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~----~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~ 173 (273)
......+ ...+++.+.+|.+.+.|+|.|.|+|....- .....+.+++...+|+ +...++... .+.++
T Consensus 382 Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~--~~~~s 458 (996)
T KOG0196|consen 382 CGDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVS--RTSDS 458 (996)
T ss_pred CCCCceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEee--eccCc
Confidence 0111111 246788999999999999999999976421 2234467777777775 555788887 89999
Q ss_pred EEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCc
Q psy6638 174 LLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253 (273)
Q Consensus 174 i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~ 253 (273)
++|+|..|.. ++|.|..|+|.|.+++..+ ..........+..++.+|+|++.|.|+|+|.+..|.|++|.
T Consensus 459 itlsW~~p~~--png~ildYEvky~ek~~~e--------~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~ 528 (996)
T KOG0196|consen 459 ITLSWSEPDQ--PNGVILDYEVKYYEKDEDE--------RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSG 528 (996)
T ss_pred eEEecCCCCC--CCCcceeEEEEEeeccccc--------cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCC
Confidence 9999999988 6899999999999986532 12222233357899999999999999999999999999999
Q ss_pred cEEEEcCCC
Q psy6638 254 PFIARTNEG 262 (273)
Q Consensus 254 ~~~~~t~~~ 262 (273)
.+.|.|.+.
T Consensus 529 ~~~fqT~~~ 537 (996)
T KOG0196|consen 529 KHEFQTLPS 537 (996)
T ss_pred ceeeeecCc
Confidence 999999876
No 6
>KOG4222|consensus
Probab=99.74 E-value=1.2e-16 Score=134.87 Aligned_cols=227 Identities=26% Similarity=0.426 Sum_probs=171.9
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe---------------cCCCCCcceEEEEeeccEEEEEEeCCCC-C
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ---------------ETPEAPKNIRITEESSRSLQISWTAPYS-G 82 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~---------------~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~ 82 (273)
.|+|.++.-.|.|.|+|.+.+..|....++.+.+. ..|++|....+..+..+.++|+|.+... +
T Consensus 475 ~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg 554 (1281)
T KOG4222|consen 475 SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSG 554 (1281)
T ss_pred eeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCC
Confidence 79999999999999999999999988877777663 2456676677788889999999998765 5
Q ss_pred CccceEEEEEEEeC--CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcc---------------
Q psy6638 83 NTAITQYIIQYKSS--EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE--------------- 145 (273)
Q Consensus 83 ~~~~~~y~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~--------------- 145 (273)
..++..|.+++... +..|...+.. ...+.+.|.+|+|...|.|.|+|.|..|.+.++..
T Consensus 555 ~vP~s~yiieafs~~~~etw~~ta~~----v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ 630 (1281)
T KOG4222|consen 555 AVPASGYIIEAFSPDLGETWQTTAGR----VKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAG 630 (1281)
T ss_pred ccccchhHHHHhhhhhcccccccccc----cccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhh
Confidence 66888899988764 3466643332 24577899999999999999999999986655432
Q ss_pred --------------------------------------------------------------------------------
Q psy6638 146 -------------------------------------------------------------------------------- 145 (273)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (273)
T Consensus 631 ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p 710 (1281)
T KOG4222|consen 631 ADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKP 710 (1281)
T ss_pred hhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccceEEEeccCccccccccccceeccCCcceeccccCC
Confidence
Q ss_pred -------------------------eEEEecCCCCCCCCeeE---EecCCccCCceEEEEEeCCCCCCccceeeeEEEEE
Q psy6638 146 -------------------------LQASTLEEAPNGAPREV---TSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197 (273)
Q Consensus 146 -------------------------~~~~~~~~~p~~~p~~~---~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~ 197 (273)
..+.+....|..+|..+ .... ...+++.|+|.++.....++.+.+|.|+.
T Consensus 711 ~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~--~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~ 788 (1281)
T KOG4222|consen 711 GTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGS--YNGTAGSVSWAPPPADVQNGILQGYKIEC 788 (1281)
T ss_pred CccceeeccCccCCCcceecCCcccccccccccCCCCCCCCcccccccc--CCCceeeEEecCCcccccCCcccceeEEe
Confidence 11223335566677764 3333 46678999999998877899999999998
Q ss_pred EEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEE
Q psy6638 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIAR 258 (273)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~ 258 (273)
...+.. .++.....+....+.+|.+|.++..|.|++.+.+..|.|..++.....
T Consensus 789 ~~~e~t-------r~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~ 842 (1281)
T KOG4222|consen 789 SGGEKT-------RIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIV 842 (1281)
T ss_pred ecCccc-------cccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeeee
Confidence 765421 122333334556789999999999999999999999999877665443
No 7
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.45 E-value=9.2e-13 Score=82.35 Aligned_cols=84 Identities=36% Similarity=0.629 Sum_probs=67.5
Q ss_pred CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA 237 (273)
Q Consensus 158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~ 237 (273)
+|.++++.. .+.+++.|.|+++.. .++.+.+|.|+|+..++.. .......... ...++|.+|.|++.|.
T Consensus 2 ~P~~l~v~~--~~~~sv~v~W~~~~~--~~~~~~~y~v~~~~~~~~~------~~~~~~~~~~-~~~~~i~~L~p~t~Y~ 70 (85)
T PF00041_consen 2 APENLSVSN--ISPTSVTVSWKPPSS--GNGPITGYRVEYRSVNSTS------DWQEVTVPGN-ETSYTITGLQPGTTYE 70 (85)
T ss_dssp SSEEEEEEE--ECSSEEEEEEEESSS--TSSSESEEEEEEEETTSSS------EEEEEEEETT-SSEEEEESCCTTSEEE
T ss_pred cCcCeEEEE--CCCCEEEEEEECCCC--CCCCeeEEEEEEEecccce------eeeeeeeeee-eeeeeeccCCCCCEEE
Confidence 577899988 899999999999973 3788999999999887653 1222222232 4589999999999999
Q ss_pred EEEEEecCCCcCCCC
Q psy6638 238 IVVRGYNSVGKGPFS 252 (273)
Q Consensus 238 ~~v~a~n~~g~~~~s 252 (273)
|+|+|++..|.|++|
T Consensus 71 ~~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 71 FRVRAVNSDGEGPPS 85 (85)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEEeCCcCcCCC
Confidence 999999999988764
No 8
>KOG0196|consensus
Probab=99.43 E-value=7.9e-12 Score=103.25 Aligned_cols=144 Identities=22% Similarity=0.324 Sum_probs=112.2
Q ss_pred eeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce------eEEEEEE-ecCCCCCcceEEEEeeccEEEEEE
Q psy6638 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE------MTIQLLV-QETPEAPKNIRITEESSRSLQISW 76 (273)
Q Consensus 4 r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~------~~~~~~~-~~~P~~p~~~~~~~~~~~~~~l~W 76 (273)
||..+...+.+. ...|.+|.+...|.|.+.|.|+...-. ..+.+.. +..|.+...++....+.++++|+|
T Consensus 387 ~f~P~q~gLt~~---~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW 463 (996)
T KOG0196|consen 387 RFTPRQRGLTET---SVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSW 463 (996)
T ss_pred eECCCCCCcccc---eEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEec
Confidence 455555555444 799999999999999999999764322 1333333 466777778888999999999999
Q ss_pred eCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCC
Q psy6638 77 TAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153 (273)
Q Consensus 77 ~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~ 153 (273)
..|...++.+..|+|.|.+....-. .........++.++.+|.|++.|.|+|+|....|.|..+....+.|...
T Consensus 464 ~~p~~png~ildYEvky~ek~~~e~---~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 464 SEPDQPNGVILDYEVKYYEKDEDER---SYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred CCCCCCCCcceeEEEEEeecccccc---ceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 9998888899999999998753111 1123334567889999999999999999999999999999999988654
No 9
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.31 E-value=2.8e-11 Score=75.57 Aligned_cols=84 Identities=36% Similarity=0.578 Sum_probs=68.4
Q ss_pred CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP 136 (273)
Q Consensus 57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~ 136 (273)
.+|.++.+.....+++.|.|.++....+.+.+|.|++....... .............+.+.+|.|++.|.|+|+|.+.
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~ 78 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS--DWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNS 78 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSS--EEEEEEEETTSSEEEEESCCTTSEEEEEEEEEET
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccce--eeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeC
Confidence 36889999999999999999988766778999999999876542 1223445556668999999999999999999999
Q ss_pred CCCCCC
Q psy6638 137 LGMSET 142 (273)
Q Consensus 137 ~g~~~~ 142 (273)
.|.|.+
T Consensus 79 ~g~g~~ 84 (85)
T PF00041_consen 79 DGEGPP 84 (85)
T ss_dssp TEEEEE
T ss_pred CcCcCC
Confidence 887654
No 10
>KOG4258|consensus
Probab=99.07 E-value=2.9e-09 Score=88.80 Aligned_cols=230 Identities=21% Similarity=0.341 Sum_probs=141.7
Q ss_pred EEEEeeeeeCCCEEEEEEEEcC--CCCce-eEEEE-EE---ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNY--HGTAE-MTIQL-LV---QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYII 91 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~--~g~~~-~~~~~-~~---~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v 91 (273)
...+.+|.|.+.|.|.+.+... .+... +...+ -+ ...|++|..+-..+..++.+.|.|.+|..+++.++.|.+
T Consensus 567 ~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv 646 (1025)
T KOG4258|consen 567 GFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLV 646 (1025)
T ss_pred ceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEE
Confidence 4778899999999999987632 22211 21111 12 356777777656666677899999999999999999999
Q ss_pred EEEeCCC-------------------------CCCCcc----------------------c------------------e
Q psy6638 92 QYKSSEE-------------------------MWPTQP----------------------L------------------K 106 (273)
Q Consensus 92 ~~~~~~~-------------------------~~~~~~----------------------~------------------~ 106 (273)
.|..... .|+... . .
T Consensus 647 ~wer~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~ 726 (1025)
T KOG4258|consen 647 VWERQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNA 726 (1025)
T ss_pred EEEeccCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccce
Confidence 9964311 000000 0 0
Q ss_pred EEec------------------------------------------------CCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638 107 IIVP------------------------------------------------GSQTSATLQPLLPATQYQVRLLAENPLG 138 (273)
Q Consensus 107 ~~~~------------------------------------------------~~~~~~~~~~l~~~~~y~~~v~a~~~~g 138 (273)
...+ .+..++.+.+|+..+.|.+.++|+|..+
T Consensus 727 i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~ 806 (1025)
T KOG4258|consen 727 IFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHAT 806 (1025)
T ss_pred eeecccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccc
Confidence 0000 0011345677888888999999988776
Q ss_pred C----CCCCcceEEEecCCC-CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeee
Q psy6638 139 M----SETGAELQASTLEEA-PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213 (273)
Q Consensus 139 ~----~~~s~~~~~~~~~~~-p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~ 213 (273)
. |.. ..+..+|.+.. ....|.-+....- ...+.+.|+|.+|.. ++|.|.+|.|.|+..+.+.... -..
T Consensus 807 ~~~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~-~~~~~v~l~w~EP~~--pNGli~~Y~Vk~r~~~~et~v~---cvs 879 (1025)
T KOG4258|consen 807 PKCGCSHA-AFVFARTMPTMGADDIPGPVTWECH-IEMNSVILRWLEPKE--PNGLILNYEVKYRRNGDETHVE---CVS 879 (1025)
T ss_pred cccccchh-hhhhhccccccccccCCCceeEecc-cCcceEEEecCCCCC--CCccEEEEEEEEeeccCcchhh---hhh
Confidence 4 211 11223332211 1112222222220 278899999999988 7999999999999776542100 000
Q ss_pred eEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEE
Q psy6638 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIAR 258 (273)
Q Consensus 214 ~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~ 258 (273)
.. .-.+...+.+..|.+| .|.++|+|-.-+|.|+|.+...|.
T Consensus 880 R~--~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~ 921 (1025)
T KOG4258|consen 880 RM--DYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFY 921 (1025)
T ss_pred hh--hhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceE
Confidence 00 1112345677888877 899999999999999987765543
No 11
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.96 E-value=1.5e-08 Score=63.81 Aligned_cols=90 Identities=29% Similarity=0.501 Sum_probs=64.2
Q ss_pred CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA 237 (273)
Q Consensus 158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~ 237 (273)
+|.++.+.. ....++.|.|.++... ++.+.+|.|++...... .+............+.+.+|.|++.|.
T Consensus 3 ~p~~~~~~~--~~~~~~~v~W~~~~~~--~~~~~~y~v~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~p~~~Y~ 71 (93)
T cd00063 3 PPTNLRVTD--VTSTSVTLSWTPPEDD--GGPITGYVVEYREKGSG-------DWKEVEVTPGSETSYTLTGLKPGTEYE 71 (93)
T ss_pred CCCCcEEEE--ecCCEEEEEECCCCCC--CCcceeEEEEEeeCCCC-------CCEEeeccCCcccEEEEccccCCCEEE
Confidence 444566665 6679999999998652 25677999999876422 122222221245789999999999999
Q ss_pred EEEEEecCCCcCCCCccEEEE
Q psy6638 238 IVVRGYNSVGKGPFSEPFIAR 258 (273)
Q Consensus 238 ~~v~a~n~~g~~~~s~~~~~~ 258 (273)
|+|++.+..|.|.++....+.
T Consensus 72 ~~v~a~~~~~~~~~s~~~~~~ 92 (93)
T cd00063 72 FRVRAVNGGGESPPSESVTVT 92 (93)
T ss_pred EEEEEECCCccCCCccccccc
Confidence 999999988888777644443
No 12
>KOG4802|consensus
Probab=98.90 E-value=2.1e-08 Score=76.93 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=83.8
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCC---CCCCCcceEEEecCCCCCCCCeeEEecCCc-cCCceEEEEEeCCCCCCccce
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLG---MSETGAELQASTLEEAPNGAPREVTSDPGV-VDPTELLIKWKAPPRESWNGV 189 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g---~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~-~~~~~i~l~W~~~~~~~~~~~ 189 (273)
..+...+++||..|.|+|.|+|..| .+.++......-.+.+|+ +|.++++...+ .+.-...|.|-|+.. +-+
T Consensus 209 ~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~s---dlP 284 (516)
T KOG4802|consen 209 NTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSKS---DLP 284 (516)
T ss_pred ceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCCC---CCc
Confidence 3567788999999999999999876 455565555554444554 67777765410 233346688888775 568
Q ss_pred eeeEEEEEEEcCC--CCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638 190 LLGYDVGYQISSG--SSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250 (273)
Q Consensus 190 i~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~ 250 (273)
+.+|.|.|..--. ...+... ..... .+..+.|.+|.|+..|.|.|+|+...|.+.
T Consensus 285 v~~Yki~Ws~~v~s~k~~m~tk---s~~~k---~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 285 VEKYKITWSLYVNSAKASMITK---SSYVK---DTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred ceeeEEEeehhhhhhhhhcccc---cceee---ccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 9999999875421 1101100 01110 122455999999999999999999877654
No 13
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.88 E-value=1.4e-08 Score=63.42 Aligned_cols=57 Identities=44% Similarity=0.632 Sum_probs=47.7
Q ss_pred ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59 (273)
Q Consensus 3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p 59 (273)
.||.+..........++|.|.++...|.|.|+|.|.|..|.....+.|.+..+|.+|
T Consensus 32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~P 88 (88)
T cd05735 32 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP 88 (88)
T ss_pred CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCCC
Confidence 356555433344556789999999999999999999999999999999999999887
No 14
>KOG4222|consensus
Probab=98.84 E-value=1.2e-08 Score=87.82 Aligned_cols=217 Identities=18% Similarity=0.159 Sum_probs=129.4
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec---CCCCCcceEEEEeec----cEEEEEEeCCCCCCccceEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE---TPEAPKNIRITEESS----RSLQISWTAPYSGNTAITQYII 91 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~---~P~~p~~~~~~~~~~----~~~~l~W~~~~~~~~~~~~y~v 91 (273)
.|.|+++.+.|.|.|.|...+..|+......+.+.. --.||..+.....+. .+...-|-.. .+. + .+.+
T Consensus 377 ~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~a-tg~-P--~p~i 452 (1281)
T KOG4222|consen 377 TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSA-TGA-P--TPNI 452 (1281)
T ss_pred CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhh-hCC-C--CCCc
Confidence 799999999999999999999888876644443321 112332222211110 1111122110 010 1 1223
Q ss_pred EEEeCCC---CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec-----------CCCCCC
Q psy6638 92 QYKSSEE---MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL-----------EEAPNG 157 (273)
Q Consensus 92 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~-----------~~~p~~ 157 (273)
.|...+- .|.. .... ....+.++.+|.....|.|.+.|.+..|.+.|+..+.+.-. ...-+.
T Consensus 453 ~wl~dg~~v~~~d~-~~s~---~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS 528 (1281)
T KOG4222|consen 453 SWLKDGCNVMNPDS-RISQ---QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPS 528 (1281)
T ss_pred hhhhcccccccCCc-ccce---eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCC
Confidence 3332221 1110 0001 12245677788888889999999999998888776533211 111123
Q ss_pred CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA 237 (273)
Q Consensus 158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~ 237 (273)
+|..-.+.. .+.++++|+|.+..... .+++.+|.+++....-.+ .|.... .....+.+.|.+|+|+..|.
T Consensus 529 ~p~~p~v~~--v~~~~v~LsW~~~s~sg-~vP~s~yiieafs~~~~e------tw~~ta-~~v~~t~~~I~gL~P~~syl 598 (1281)
T KOG4222|consen 529 PPGTPGVVN--VSRTSVTLSWQPTSPSG-AVPASGYIIEAFSPDLGE------TWQTTA-GRVKTTTYAIRGLKPNLSYL 598 (1281)
T ss_pred CCCCCcccc--CCCceEEecccCCCCCC-ccccchhHHHHhhhhhcc------cccccc-cccccceeeecCcCccceee
Confidence 444444555 68889999999987632 457889999987654322 111111 12235789999999999999
Q ss_pred EEEEEecCCCcCCCCc
Q psy6638 238 IVVRGYNSVGKGPFSE 253 (273)
Q Consensus 238 ~~v~a~n~~g~~~~s~ 253 (273)
|.|+|.|..|.+.++.
T Consensus 599 f~vRa~n~~Gis~Ps~ 614 (1281)
T KOG4222|consen 599 FLVRAENEQGISDPST 614 (1281)
T ss_pred eeeeccccccccCCcc
Confidence 9999999999877653
No 15
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.70 E-value=8.4e-07 Score=55.68 Aligned_cols=85 Identities=38% Similarity=0.649 Sum_probs=61.7
Q ss_pred CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEec-CCccEEEecCCCCCCeEEEEEEE
Q psy6638 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVP-GSQTSATLQPLLPATQYQVRLLA 133 (273)
Q Consensus 56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~y~~~v~a 133 (273)
|.+|.++.+......++.+.|.++......+..|.+.+.... ..|. ..... .....+.+.+|.|++.|.++|++
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~----~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWK----EVEVTPGSETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCE----EeeccCCcccEEEEccccCCCEEEEEEEE
Confidence 446667777777789999999987544346778999998754 2232 11111 25678889999999999999999
Q ss_pred eCCCCCCCCCc
Q psy6638 134 ENPLGMSETGA 144 (273)
Q Consensus 134 ~~~~g~~~~s~ 144 (273)
.+..|.+.++.
T Consensus 77 ~~~~~~~~~s~ 87 (93)
T cd00063 77 VNGGGESPPSE 87 (93)
T ss_pred ECCCccCCCcc
Confidence 98877766554
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.67 E-value=1.1e-07 Score=60.64 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=43.5
Q ss_pred cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638 13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59 (273)
Q Consensus 13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p 59 (273)
..+..+.|.|.++.+.|.|.|+|.|.|.+|...+.+.+.+..+|.+|
T Consensus 51 ~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 51 NTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred ecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence 34567799999999999999999999999999999999999999988
No 17
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.51 E-value=5.7e-07 Score=55.71 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=37.2
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P 56 (273)
...|.|.+++..|.|.|+|.|.|..|...+.+.+.+.++|
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 4589999999999999999999999999999999998876
No 18
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.46 E-value=2.6e-06 Score=51.96 Aligned_cols=77 Identities=29% Similarity=0.566 Sum_probs=49.4
Q ss_pred eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638 161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV 240 (273)
Q Consensus 161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v 240 (273)
++.+.. ....++.|.|+++... + . .+|.+.|........ . .+........ ...+.+.+|.+++.|.|+|
T Consensus 6 ~~~~~~--~~~~~~~v~W~~~~~~--~-~-~~y~~~~~~~~~~~~--~--~~~~~~~~~~-~~~~~i~~L~~~~~Y~v~v 74 (83)
T smart00060 6 NLRVTD--VTSTSVTLSWEPPPDD--G-I-TGYIVGYRVEYREEG--S--SWKEVNVTPS-STSYTLTGLKPGTEYEFRV 74 (83)
T ss_pred cEEEEE--EeCCEEEEEECCCCCC--C-C-CccEEEEEEEEecCC--C--ccEEEEecCC-ccEEEEeCcCCCCEEEEEE
Confidence 455554 5566999999977652 1 1 577777765533211 0 1111211111 4689999999999999999
Q ss_pred EEecCCCc
Q psy6638 241 RGYNSVGK 248 (273)
Q Consensus 241 ~a~n~~g~ 248 (273)
+|.+..|.
T Consensus 75 ~a~~~~g~ 82 (83)
T smart00060 75 RAVNGAGE 82 (83)
T ss_pred EEEcccCC
Confidence 99987553
No 19
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.40 E-value=8.7e-07 Score=54.49 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=36.9
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P 56 (273)
..|.|.+++..|.|.|+|.|.|..+....++.+.|.++|
T Consensus 47 ~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 47 GDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred CcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 379999999999999999999999999999999999887
No 20
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.36 E-value=1.6e-06 Score=53.81 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=36.8
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P 56 (273)
...|.|.+++..|.|.|+|.|.|..|.....+.+.+.++|
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 4479999999999999999999999999999999998876
No 21
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.36 E-value=1.5e-05 Score=48.47 Aligned_cols=79 Identities=34% Similarity=0.492 Sum_probs=50.3
Q ss_pred CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL 137 (273)
Q Consensus 58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~ 137 (273)
+|.++.+......++.++|.++..... ..|.+.+......-...............+.+.+|.+++.|.|+|+|.+..
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~ 80 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEccc
Confidence 445566666667799999997643322 567777765432100001112222224688999999999999999999865
Q ss_pred C
Q psy6638 138 G 138 (273)
Q Consensus 138 g 138 (273)
|
T Consensus 81 g 81 (83)
T smart00060 81 G 81 (83)
T ss_pred C
Confidence 4
No 22
>KOG4258|consensus
Probab=98.34 E-value=1.3e-05 Score=67.77 Aligned_cols=132 Identities=24% Similarity=0.383 Sum_probs=88.6
Q ss_pred EEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCC---------------CCCCCccceEEec------CCccEEEecCC
Q psy6638 64 ITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSE---------------EMWPTQPLKIIVP------GSQTSATLQPL 121 (273)
Q Consensus 64 ~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~---------------~~~~~~~~~~~~~------~~~~~~~~~~l 121 (273)
....+..++.++|..-.. +-....+|.+.|++.. ..|... .+..+ .....+.+.+|
T Consensus 496 ~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~--~v~~~~~~p~~~~~~~~~l~~L 573 (1025)
T KOG4258|consen 496 STVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVV--DVDPPDLIPNDGTHPGFLLDGL 573 (1025)
T ss_pred eEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEE--eccCCcCCCccccccceehhcC
Confidence 344567889999985432 2235678999998642 112210 00111 12225678999
Q ss_pred CCCCeEEEEEEEeCC--CCC--CCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEE
Q psy6638 122 LPATQYQVRLLAENP--LGM--SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197 (273)
Q Consensus 122 ~~~~~y~~~v~a~~~--~g~--~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~ 197 (273)
+|+++|-+-|++... .+. ...|.-..++|....|. ||..+-... .+++.|.|.|++|.. +||.++.|.|.|
T Consensus 574 kP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~s--nsSsqi~l~W~pP~~--pNG~lt~Ylv~w 648 (1025)
T KOG4258|consen 574 KPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKS--NSSSQILLKWKPPSQ--PNGNLTHYLVVW 648 (1025)
T ss_pred CccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-Ccchhhhcc--CcchheeEEecCCCC--CCCceeEEEEEE
Confidence 999999999998632 221 12355567888888775 776666655 567799999999988 799999999999
Q ss_pred EEcCC
Q psy6638 198 QISSG 202 (273)
Q Consensus 198 ~~~~~ 202 (273)
+....
T Consensus 649 er~~~ 653 (1025)
T KOG4258|consen 649 ERQAE 653 (1025)
T ss_pred EeccC
Confidence 87654
No 23
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.33 E-value=0.00064 Score=51.84 Aligned_cols=249 Identities=14% Similarity=0.118 Sum_probs=124.6
Q ss_pred eeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC-CCcee-EEEEEEe--cCCCCCcceE-----EEEeec-c-EE
Q psy6638 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH-GTAEM-TIQLLVQ--ETPEAPKNIR-----ITEESS-R-SL 72 (273)
Q Consensus 4 r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~-g~~~~-~~~~~~~--~~P~~p~~~~-----~~~~~~-~-~~ 72 (273)
||..-..++ .|..+.+.|.+|.++..|.|.+.+.|.. |.+.+ ....... .....|..++ ...... . .-
T Consensus 2 r~~~~~~vC-vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~ 80 (300)
T PF10179_consen 2 RYADCQIVC-VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFK 80 (300)
T ss_pred cceeEEEEE-cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCcee
Confidence 443333333 3445688899999999999999999863 33333 1111121 2222332221 111111 1 23
Q ss_pred EEEEeCCC-CCCccceEEEEEEEeCCCCCC----CccceEEe---cCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638 73 QISWTAPY-SGNTAITQYIIQYKSSEEMWP----TQPLKIIV---PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA 144 (273)
Q Consensus 73 ~l~W~~~~-~~~~~~~~y~v~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~ 144 (273)
..++..|. ........+.+ ...++... ........ -..-..+.+.++.|+..|.+++.+.+... +....
T Consensus 81 ~f~f~vP~~~~~~~~~~l~v--~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~ 157 (300)
T PF10179_consen 81 FFSFKVPKRSSTHQSLWLFV--QSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTF 157 (300)
T ss_pred EEEEcCCcCCCCCccEEEEE--EeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEE
Confidence 34555441 11111111212 12121100 00000000 01234678899999999999998766433 11111
Q ss_pred ceE-EEecCCCC--CCCCeeEEecC--CccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCC--C------c------
Q psy6638 145 ELQ-ASTLEEAP--NGAPREVTSDP--GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS--S------L------ 205 (273)
Q Consensus 145 ~~~-~~~~~~~p--~~~p~~~~~~~--~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~--~------~------ 205 (273)
-+. ..+..... |.-|.+..+.. .-.+-++++|.|.+..+. . ..|-|+.+...+. . .
T Consensus 158 kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~----~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~ 232 (300)
T PF10179_consen 158 KVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR----S-IKYCVYRREEHSNYQERSVSRMPNQCLGP 232 (300)
T ss_pred EEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC----C-ceEEEEEEEecCchhhhhhcccCccCCCC
Confidence 122 22222211 23444444432 003457999999997762 1 5788888765443 0 0
Q ss_pred c-ceeeeeeeE-Eec--------CCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638 206 A-LSSYTLKSV-ELD--------NQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261 (273)
Q Consensus 206 ~-~~~~~~~~~-~~~--------~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~ 261 (273)
+ ........+ ... ...-...+|.+|+||+.|.|.|.+.-..|.+-+-....+.|..
T Consensus 233 ~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr~ 298 (300)
T PF10179_consen 233 ESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKTRR 298 (300)
T ss_pred CccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEecC
Confidence 0 000000111 011 1112345899999999999999999877776555556666643
No 24
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.28 E-value=5.2e-06 Score=54.06 Aligned_cols=41 Identities=34% Similarity=0.462 Sum_probs=36.9
Q ss_pred EEEEEEeeee-eCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638 17 ISELGIANVL-RQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57 (273)
Q Consensus 17 ~~~l~i~~~~-~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~ 57 (273)
.+.|.|.++. ..|.|.|+|.|.|.+|.....+.|.+..+|+
T Consensus 68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p~ 109 (109)
T cd05773 68 TSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRPD 109 (109)
T ss_pred eeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence 5789999997 5899999999999999999999999888774
No 25
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.26 E-value=4.7e-06 Score=52.69 Aligned_cols=49 Identities=33% Similarity=0.521 Sum_probs=43.7
Q ss_pred cceeEEEEEEecCCcEEEEEEeeeeeCC-CEEEEEEEEcCCCCceeEEEE
Q psy6638 2 FSRYTIREQVLEDGMISELGIANVLRQD-SGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 2 ~~r~~~~~~~~~~~~~~~l~i~~~~~~~-~~~y~~~a~n~~g~~~~~~~~ 50 (273)
++||.+......++..+.|.|.++...| .|.|.|.|.|.+|.....+.|
T Consensus 48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 4799999988889999999999998877 689999999999999877665
No 26
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.19 E-value=7.9e-06 Score=49.15 Aligned_cols=36 Identities=33% Similarity=0.288 Sum_probs=32.0
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
..+|.|.++.++|.|.|+|.|.|..|.....+.|.|
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 40 RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 358999999999999999999999999988877653
No 27
>KOG4367|consensus
Probab=98.17 E-value=4.1e-06 Score=65.22 Aligned_cols=82 Identities=23% Similarity=0.443 Sum_probs=65.9
Q ss_pred cCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCc
Q psy6638 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK 248 (273)
Q Consensus 169 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~ 248 (273)
...++++|+|+.|+.. ..+..+|.++.-..++. .++++...+ .+..++++|.-++.|..+|.++|..|.
T Consensus 450 t~nns~t~~wkqp~~~--~~~~dg~~leld~g~~g-------~frevy~g~--etmctvdglhfns~y~arvka~n~tg~ 518 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLS--TVPADGYILELDDGNGG-------QFREVYVGK--ETMCTVDGLHFNSTYNARVKAFNKTGV 518 (699)
T ss_pred ccCCceEEEeecCCCC--CCCCcceEEEeecCCCC-------ceeEEEecC--ceeEEecceecchhHHHHHHHhhccCC
Confidence 4578999999976652 45778999998776543 355555433 579999999999999999999999999
Q ss_pred CCCCccEEEEcCC
Q psy6638 249 GPFSEPFIARTNE 261 (273)
Q Consensus 249 ~~~s~~~~~~t~~ 261 (273)
+++|+.+..+|.+
T Consensus 519 s~ys~tl~lqts~ 531 (699)
T KOG4367|consen 519 SPYSKTLVLQTSE 531 (699)
T ss_pred CcccceeEeeecc
Confidence 9999988887765
No 28
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.15 E-value=1.1e-05 Score=51.52 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=32.3
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
+....|.|.++.++|.|.|.|.|.|..|.....+.|.
T Consensus 61 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 97 (98)
T cd05870 61 HGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 97 (98)
T ss_pred CCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence 3456899999999999999999999999988877664
No 29
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.14 E-value=9.7e-06 Score=48.79 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=31.9
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.+.|.|.++.++|.|.|+|.|.|..|.....+.|.+
T Consensus 40 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 40 YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 457999999999999999999999999988877653
No 30
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.14 E-value=1.2e-05 Score=48.30 Aligned_cols=39 Identities=31% Similarity=0.312 Sum_probs=34.0
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.+..+.|.|.++.+.|.|.|+|.|.|..|.....+.+.+
T Consensus 36 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 36 TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 455778999999999999999999999999888776653
No 31
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.11 E-value=8.3e-06 Score=48.81 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=30.6
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
.|.|.++.++|.|.|+|.|.|..|.......+.
T Consensus 40 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 40 SLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 699999999999999999999999998887765
No 32
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.10 E-value=1.5e-05 Score=49.41 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.+..+.|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus 48 ~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 48 YKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred cCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 445678999999999999999999999999888776653
No 33
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.07 E-value=2e-05 Score=50.25 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=33.7
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
....+.|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus 59 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 59 HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred CccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 345578999999999999999999999999988777653
No 34
>KOG4152|consensus
Probab=98.06 E-value=4.5e-05 Score=61.23 Aligned_cols=129 Identities=17% Similarity=0.254 Sum_probs=83.4
Q ss_pred cCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEE
Q psy6638 119 QPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQ 198 (273)
Q Consensus 119 ~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~ 198 (273)
..|.+|..|.|+|.|+|..|.+.++....+.+....-|..|..+.+.. +-..+++.|.+|.... .|.|+.|..+..
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k---~~eGi~l~weppt~p~-sg~Iieys~ylA 727 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK---TIEGISLVWEPPTKPG-SGTIIEYSPYLA 727 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc---cccceeecccCCCCCC-CcceEEeehhhH
Confidence 568899999999999999999999998888886554445666666655 6678999999998754 667888887653
Q ss_pred EcCCCCc-cceeeeeeeEE--------ecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638 199 ISSGSSL-ALSSYTLKSVE--------LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS 252 (273)
Q Consensus 199 ~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s 252 (273)
-....-. ......+.... ...+. .---+.+...+-.-.|+|.|.|.+|.|+..
T Consensus 728 i~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~-l~tA~~d~t~~paivfri~aknekGyGpat 789 (830)
T KOG4152|consen 728 IITQAGATGVSQLPFMRSYCGIITTCVVTSGK-LITAVPDITTGPAIVFRIVAKNEKGYGPAT 789 (830)
T ss_pred hhhhhhccCccccceeeeecccceeeEEeccc-ceeeccccccCcceEEEEEecCCCCCCcce
Confidence 3211000 00000011111 11111 111122344466789999999999999754
No 35
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.04 E-value=2.5e-05 Score=48.95 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=34.8
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P 56 (273)
.|.|.++.++|.|.|.|.|.|..|.....+.+.|....
T Consensus 48 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 85 (90)
T cd05726 48 DLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVI 85 (90)
T ss_pred eEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecc
Confidence 69999999999999999999999999888888887654
No 36
>KOG3632|consensus
Probab=98.04 E-value=7.2e-05 Score=64.39 Aligned_cols=198 Identities=24% Similarity=0.330 Sum_probs=124.6
Q ss_pred CEEEEEEEEcCCCCcee-EEEEEE-ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceE
Q psy6638 30 SGTLSCLATNYHGTAEM-TIQLLV-QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI 107 (273)
Q Consensus 30 ~~~y~~~a~n~~g~~~~-~~~~~~-~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~ 107 (273)
.|...+.+....|+... ...+.+ ...+..|.++++...+..+..++|-+... ... .+.|...... .
T Consensus 644 s~~isvq~ltSrGsqd~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~ns---n~~--Hviyln~eE~-------~ 711 (1335)
T KOG3632|consen 644 SGYISVQRLTSRGSQDQLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNS---NFL--HVIYLNAEEP-------R 711 (1335)
T ss_pred ceeeehhhhhccCCCCcceeeEeccccccccchhhhhhhhhchhhheeeeecCC---Ccc--eeeecCCccC-------C
Confidence 44445556667777655 333333 56678999999999999999999986532 111 2222222111 0
Q ss_pred EecCCccEEEecCCCCCCeEEEEEEEeCC-CC--------CCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEE
Q psy6638 108 IVPGSQTSATLQPLLPATQYQVRLLAENP-LG--------MSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178 (273)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~y~~~v~a~~~-~g--------~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W 178 (273)
........+++.+|.|++.|..+|.+... .+ ++.-..++.|.|..+.|+.||.+|++..+ .++..+.++|
T Consensus 712 ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g-~spg~l~vsw 790 (1335)
T KOG3632|consen 712 PSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETG-GSPGRLEVSW 790 (1335)
T ss_pred CchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecC-CCCceeeeec
Confidence 11123345677899999999999988654 11 23335568899999999999999999873 5788899999
Q ss_pred eCCCCCC---ccc-eeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc-ceEEEEEEEecCCCcCC
Q psy6638 179 KAPPRES---WNG-VLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY-TKYAIVVRGYNSVGKGP 250 (273)
Q Consensus 179 ~~~~~~~---~~~-~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~-~~Y~~~v~a~n~~g~~~ 250 (273)
.|+.-+. .|| .+++|.|+.... .+.++.......+.+.+..|+.+ ..-.|.|+.....|++-
T Consensus 791 rPptldsag~sngv~vtgYavyadgq----------kv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv 857 (1335)
T KOG3632|consen 791 RPPTLDSAGCSNGVAVTGYAVYADGQ----------KVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV 857 (1335)
T ss_pred cCceeccccccCceeeeeeeeeeCCc----------eeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence 9986532 233 678999987522 22333333333345555556553 23346677666666653
No 37
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.02 E-value=2.5e-05 Score=49.87 Aligned_cols=48 Identities=31% Similarity=0.499 Sum_probs=38.2
Q ss_pred ceeEEEEEEecCCcEEEEEEeeeeeCC-CEEEEEEEEcCCCCceeEEEE
Q psy6638 3 SRYTIREQVLEDGMISELGIANVLRQD-SGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~-~~~y~~~a~n~~g~~~~~~~~ 50 (273)
.||.+.......+..++|.|.++..+| .|.|.|.|.|..|.....+.|
T Consensus 49 ~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 49 GRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred CCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 567776654445667899999999955 899999999999998877654
No 38
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.01 E-value=2.5e-05 Score=49.64 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
....++|.|.++..+|.|.|.|.|.|..|....++.+.
T Consensus 58 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~ 95 (96)
T cd05732 58 HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE 95 (96)
T ss_pred CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence 44567899999999999999999999999988777664
No 39
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=97.96 E-value=3.4e-05 Score=48.41 Aligned_cols=39 Identities=33% Similarity=0.483 Sum_probs=32.3
Q ss_pred cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEE
Q psy6638 13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLL 51 (273)
Q Consensus 13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~ 51 (273)
.++....|.|.++..+|.|.|+|.|.|..|.... .+.+.
T Consensus 51 ~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~ 90 (92)
T cd05866 51 KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 90 (92)
T ss_pred eCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence 4566678999999999999999999999998643 55554
No 40
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=97.92 E-value=5.4e-05 Score=47.96 Aligned_cols=39 Identities=31% Similarity=0.487 Sum_probs=32.9
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCC-CCceeEEEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYH-GTAEMTIQLLV 52 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~-g~~~~~~~~~~ 52 (273)
++..++|.|.++.++|.|.|+|.|.|.. |....++.+.+
T Consensus 56 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 56 DDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred CCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 3446789999999999999999999997 77777777654
No 41
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.91 E-value=3.1e-05 Score=46.54 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=30.9
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus 41 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 41 TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 7999999999999999999999999888777653
No 42
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.89 E-value=8.6e-05 Score=48.16 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=55.3
Q ss_pred CCeeEEecCCccCCceEEEEEeCCCCC----Cccce------eeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc
Q psy6638 158 APREVTSDPGVVDPTELLIKWKAPPRE----SWNGV------LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI 227 (273)
Q Consensus 158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~----~~~~~------i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 227 (273)
||. +.+. ...+.+.|.+.+|... ..+.. ...|.|.|+..++.. .... .......++|
T Consensus 5 PP~-v~v~---~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~------~~~~---~~~~~~~~~l 71 (106)
T PF09294_consen 5 PPS-VNVS---SCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNE------KKKE---IETKNSSVTL 71 (106)
T ss_dssp SSE-EEEE---EETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSC------EEEE---EESSSEEEEE
T ss_pred CCE-EEEE---ECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCcc------ceEE---EeecCCEEEE
Confidence 443 6664 4788999999999710 00111 257999999987641 0111 1222457799
Q ss_pred CCCCccceEEEEEEEec--CCCcCCCCccEEEEc
Q psy6638 228 PGLTPYTKYAIVVRGYN--SVGKGPFSEPFIART 259 (273)
Q Consensus 228 ~~L~p~~~Y~~~v~a~n--~~g~~~~s~~~~~~t 259 (273)
.+|.|++.|-|+|++.. ....|.+|++.-+.|
T Consensus 72 ~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 72 SDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp ES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred eCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 99999999999999943 233477777766655
No 43
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=97.89 E-value=9.3e-05 Score=45.24 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=31.6
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
....|.|.++.+.|.|.|+|.|.|.+|.....+.+.
T Consensus 44 ~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 44 YHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred cEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 356799999999999999999999999988876654
No 44
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=97.88 E-value=4.4e-05 Score=45.15 Aligned_cols=33 Identities=36% Similarity=0.509 Sum_probs=30.1
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
.|.|.++.++|.|.|+|.|.|..|.....+.+.
T Consensus 36 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 36 SLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 799999999999999999999999988777664
No 45
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.88 E-value=3.1e-05 Score=46.13 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=31.7
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.+|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus 36 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 36 KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 48999999999999999999999999888777765
No 46
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.87 E-value=4.3e-05 Score=45.48 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=30.2
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus 38 ~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 38 NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4888899999999999999999999988877653
No 47
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=97.87 E-value=5.6e-05 Score=45.53 Aligned_cols=36 Identities=25% Similarity=0.152 Sum_probs=31.9
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
...+|.|.++.++|.|.|+|.|.|..|.....+.+.
T Consensus 39 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (75)
T cd05744 39 GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD 74 (75)
T ss_pred CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence 345799999999999999999999999988877765
No 48
>KOG4802|consensus
Probab=97.85 E-value=0.0002 Score=55.77 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=77.8
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCcee-----EEEEEE-ecCCCCCcceEEEEeecc---EEEEEEeCCCCCCccceEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEM-----TIQLLV-QETPEAPKNIRITEESSR---SLQISWTAPYSGNTAITQY 89 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-----~~~~~~-~~~P~~p~~~~~~~~~~~---~~~l~W~~~~~~~~~~~~y 89 (273)
+....++.|+..|.|++.|.|..|...- .+...- .-+|.+|.++++..+... ...+.|.|+ ..+.++..|
T Consensus 210 ~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~-~sdlPv~~Y 288 (516)
T KOG4802|consen 210 TYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPS-KSDLPVEKY 288 (516)
T ss_pred eeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCC-CCCCcceee
Confidence 6888999999999999999998876422 222111 345667778776654322 245566655 567799999
Q ss_pred EEEEEeCCCCCCCcc-c--eEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCC
Q psy6638 90 IIQYKSSEEMWPTQP-L--KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET 142 (273)
Q Consensus 90 ~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~ 142 (273)
.|.|.-.-...+... . ........ ..|.+|.|+..|.+.|+|+...|.+..
T Consensus 289 ki~Ws~~v~s~k~~m~tks~~~k~thq--~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 289 KITWSLYVNSAKASMITKSSYVKDTHQ--FSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred EEEeehhhhhhhhhcccccceeeccch--hhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 999975421111000 0 01111122 238999999999999999988775543
No 49
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.85 E-value=4.9e-05 Score=44.48 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=32.1
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.....|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus 28 ~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 28 HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 34568999999999999999999999998777666544
No 50
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.84 E-value=4.4e-05 Score=45.72 Aligned_cols=34 Identities=41% Similarity=0.636 Sum_probs=30.8
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.|.|.++.++|.|.|+|.|.|..|.....+.+.|
T Consensus 40 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 40 SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6999999999999999999999999988777653
No 51
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=97.84 E-value=2.9e-05 Score=48.70 Aligned_cols=36 Identities=33% Similarity=0.397 Sum_probs=32.2
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
...|.|.++..+|.|.|+|.|.|..|...+++.|.|
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 357999999999999999999999999888887765
No 52
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=97.82 E-value=5.4e-05 Score=45.86 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=31.0
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
..+|.|.++.+.|.|.|+|.|.|..|.....+.+.
T Consensus 43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 43 HGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 56899999999999999999999999988776543
No 53
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=97.81 E-value=9.3e-05 Score=46.59 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=32.4
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
+..++|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus 55 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 55 GKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred CCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 4456899999999999999999999999988777664
No 54
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=97.80 E-value=4.2e-05 Score=47.96 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=32.5
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.+.|.|.++..+|.|.|+|.|.|..|.....+.+.|
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 54 MEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 468999999999999999999999999888877765
No 55
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.78 E-value=7.5e-05 Score=44.98 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=30.8
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus 41 ~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 41 VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 7999999999999999999999999887777665
No 56
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.77 E-value=0.00068 Score=50.32 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=70.3
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS 96 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~ 96 (273)
...|.|.+++.+|.|.|+|.+.|..|.....+.+.+...+ .++ .......+.|.+..............+.|..+
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~---~~~--~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn 171 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT---INY--QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN 171 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC---ccc--eEecCCCEEEEeeCCCCccccCCCceEEEEEC
Confidence 3479999999999999999999988887777777774322 222 22235566777764311000001224666655
Q ss_pred CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638 97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP 136 (273)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~ 136 (273)
+..-... ...........+.|.++.......|.+.|...
T Consensus 172 g~~l~~~-~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 172 GNIVLYT-DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred CEECCCC-CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 4321111 11222233457889999999888888888764
No 57
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=97.77 E-value=9.6e-05 Score=46.25 Aligned_cols=39 Identities=46% Similarity=0.701 Sum_probs=34.4
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.+..+.|.|.++..+|.|.|+|.+.|..|.....+.+.+
T Consensus 52 ~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 52 DGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp ETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 457889999999999999999999999988888777654
No 58
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.77 E-value=6.5e-05 Score=44.43 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=29.3
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~ 50 (273)
.|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus 37 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 37 YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 79999999999999999999999998777654
No 59
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.77 E-value=8.1e-05 Score=47.61 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=33.2
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~ 53 (273)
.++|.|.++.++|.|.|+|.|.|..|.....+.+.+.
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 5789999999999999999999999998888777664
No 60
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.76 E-value=6.5e-05 Score=46.83 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=31.3
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus 54 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 54 VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 7999999999999999999999999988887765
No 61
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.72 E-value=8.9e-05 Score=45.39 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=31.2
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.+|.|.++.++|.|.|.|.|.|..|.....+.|.|
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 48999999999999999999999999888777653
No 62
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=97.70 E-value=0.00012 Score=46.37 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=33.0
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~ 53 (273)
.+.|.|.++..+|.|.|+|.|.|..|.....+.+.+.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 57 GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence 3579999999999999999999999998888887764
No 63
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.70 E-value=0.00018 Score=45.25 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=32.2
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
+..++|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus 55 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 55 GKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred CCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 3346799999999999999999999999988877664
No 64
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.68 E-value=0.00018 Score=43.42 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=30.7
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQ 49 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~ 49 (273)
.+..+.|.|.++..+|.|.|+|.+.|..|....++.
T Consensus 40 ~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 40 KKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 345678999999999999999999999998776543
No 65
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.67 E-value=0.00017 Score=45.41 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~ 50 (273)
.+..+.|.|.++..+|.|.|.|.|.|..|.....+.|
T Consensus 55 ~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 55 TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 4446789999999999999999999999988776654
No 66
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.67 E-value=0.00016 Score=43.50 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=30.8
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQ 49 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~ 49 (273)
.....+|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus 39 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 39 KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 345678999999999999999999999998766543
No 67
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=97.67 E-value=0.00011 Score=44.65 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~ 50 (273)
.+....|.|.++.++|.|.|+|.|.|..|.......+
T Consensus 38 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 38 EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 4456789999999999999999999999987664443
No 68
>KOG4194|consensus
Probab=97.64 E-value=0.012 Score=49.09 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=84.1
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ 92 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~ 92 (273)
.+.|.+.++.-.|+|.|+|.+.|.+|+.-+ .+.+.+...|. .|.++.+..... ..+.+.+.-.+. -+|.
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~m--Arl~CaAtG~P~-----PeIa 645 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQM--ARLECAATGHPR-----PEIA 645 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccc--eeeeeeccCCCC-----ccee
Confidence 567999999999999999999999999866 88888988885 666665543333 334443321111 2355
Q ss_pred EEeCCCC-CCCc-cceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638 93 YKSSEEM-WPTQ-PLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA 148 (273)
Q Consensus 93 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~ 148 (273)
|...++. +... .+...+-.....+-|.+.++.....|.+.|.|..|.-...+.+.+
T Consensus 646 wqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V 703 (873)
T KOG4194|consen 646 WQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTV 703 (873)
T ss_pred ehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEE
Confidence 5554432 3211 123333345567788999999999999999999986555554433
No 69
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=97.64 E-value=0.00017 Score=43.58 Aligned_cols=37 Identities=41% Similarity=0.556 Sum_probs=33.2
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~ 53 (273)
.+.|.|.++...|.|.|+|.+.|..|.....+.+.+.
T Consensus 38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 38 GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3579999999999999999999999999988888764
No 70
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=97.64 E-value=0.00017 Score=45.22 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=32.2
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
....|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus 54 ~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 54 DIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred CEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 456899999999999999999999999988877764
No 71
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.63 E-value=0.0003 Score=45.66 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=56.6
Q ss_pred cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE-eCCCCCCCccceEEecCCccEEEecCCC--CCCeEEEE
Q psy6638 54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPGSQTSATLQPLL--PATQYQVR 130 (273)
Q Consensus 54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~y~~~ 130 (273)
....+|.++++.+. +....|.|+++.. ...-..|.|+++ ...+.|.....+... ..+.+.+.... ....|.+|
T Consensus 20 ~~lp~P~nv~~~s~-nf~~iL~W~~~~~-~~~~~~ytVq~~~~~~~~W~~v~~C~~i--~~~~Cdlt~~~~~~~~~Y~~r 95 (107)
T PF01108_consen 20 ASLPAPQNVTVDSV-NFKHILRWDPGPG-SPPNVTYTVQYKKYGSSSWKDVPGCQNI--TETSCDLTDETSDPSESYYAR 95 (107)
T ss_dssp SSGSSCEEEEEEEE-TTEEEEEEEESTT-SSSTEEEEEEEEESSTSCEEEECCEEEE--SSSEEECTTCCTTTTSEEEEE
T ss_pred ccCCCCCeeEEEEE-CCceEEEeCCCCC-CCCCeEEEEEEEecCCcceeeccceecc--cccceeCcchhhcCcCCEEEE
Confidence 34457888888775 5568999998533 335678999999 455677755444444 44677776533 78889999
Q ss_pred EEEeCCCC
Q psy6638 131 LLAENPLG 138 (273)
Q Consensus 131 v~a~~~~g 138 (273)
|+|..+..
T Consensus 96 V~A~~~~~ 103 (107)
T PF01108_consen 96 VRAEVGNQ 103 (107)
T ss_dssp EEEEETTE
T ss_pred EEEEeCCc
Confidence 99986543
No 72
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.63 E-value=0.02 Score=45.28 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=63.5
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC--C---CcceEEEEeeccEEEEEEeCCC---CCCccceEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--A---PKNIRITEESSRSLQISWTAPY---SGNTAITQY 89 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~--~---p~~~~~~~~~~~~~~l~W~~~~---~~~~~~~~y 89 (273)
+.|.|.++..+|+|.|+|.+.|..|.....+.+.+..... . +....+. ......+.+.... .++.+ -
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~--~g~~~~i~C~~~~~~~~~~~~---~ 156 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVN--ERSTGEMVCPNINAFIASNVN---A 156 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceec--ccCcEEEECCChhhcccCCCC---c
Confidence 3588999999999999999999998877777777644321 1 0111111 1222334332110 01111 1
Q ss_pred EEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 90 IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
.+.|..... .. ...... .....+.|.++.......|.+.+.|..|.
T Consensus 157 ~i~W~k~~~-~~--~~r~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 202 (326)
T PHA02785 157 DIIWSGHRR-LR--NKRLKQ-RTPGIITIEDVRKNDAGYYTCVLKYIYGD 202 (326)
T ss_pred eEEEccCCc-cC--CcceEe-cCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence 344432211 00 011111 12346888889888888999999987763
No 73
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=97.63 E-value=0.00013 Score=44.03 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=30.8
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.|.|.++.++|.|.|+|.|.|..|.....+.+.|
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 42 ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7999999999999999999999999888777654
No 74
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=97.62 E-value=0.00012 Score=43.53 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=30.4
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.+|.|.++.++|.|.|+|.|.|..|.......+.+
T Consensus 35 ~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 35 HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 47999999999999999999999998777665544
No 75
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.62 E-value=0.00012 Score=46.85 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=33.0
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~ 53 (273)
.++|.|.++..+|.|.|+|.|.|..|....++.+.+.
T Consensus 64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 4689999999999999999999999998887777654
No 76
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.62 E-value=0.00012 Score=43.37 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=30.0
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
..|.|.++.++|.|.|+|.|.|..|.......+.+
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 37999999999999999999999998877555443
No 77
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=97.61 E-value=0.0001 Score=43.85 Aligned_cols=36 Identities=39% Similarity=0.527 Sum_probs=31.5
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
...|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus 35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 35 NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 347999999999999999999999998887776654
No 78
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.61 E-value=0.00025 Score=42.54 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=29.5
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
+|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus 41 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 41 TLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 699999999999999999999999887776654
No 79
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=97.60 E-value=0.0002 Score=43.61 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=27.6
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEM-TIQL 50 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~ 50 (273)
+|.|.++.++|.|.|.|.|.|..|.... .+.+
T Consensus 45 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 45 SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred eEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 7999999999999999999999998744 4444
No 80
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=97.60 E-value=0.00036 Score=43.86 Aligned_cols=38 Identities=39% Similarity=0.553 Sum_probs=30.4
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcCCCC-ceeEEEEE
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNYHGT-AEMTIQLL 51 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~-~~~~~~~~ 51 (273)
.+..+.|.|.++..+|.|.|+|.|.|..|. ...++.+.
T Consensus 53 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 53 DDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred CCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 445679999999999999999999998765 44455553
No 81
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=97.55 E-value=0.00022 Score=44.42 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.5
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
..|.|.++..+|.|.|+|.|.|..|.......+.+
T Consensus 53 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 53 AVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred CEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 37999999999999999999999999888777765
No 82
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=97.55 E-value=0.00022 Score=44.01 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=32.3
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
..+.|.|.+++.+|.|.|+|.|.|..|....+..+.+
T Consensus 47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 4678999999999999999999999998887766643
No 83
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.55 E-value=0.00017 Score=43.48 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=31.5
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
..|.|.++.++|.|.|+|.|.|..|...+.+.+.+
T Consensus 41 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 41 GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 47999999999999999999999999888777654
No 84
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.55 E-value=0.00017 Score=43.58 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=31.3
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
.|.|.++.+.|.|.|+|.|.|..|...+.+.+.+
T Consensus 42 ~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 42 TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6899999999999999999999999998887765
No 85
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=97.53 E-value=0.00021 Score=44.83 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=29.9
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV 52 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~ 52 (273)
..|.|.++.++|.|.|+|.|.|..|...+ .+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 55 RTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 37999999999999999999999998765 555554
No 86
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.50 E-value=0.0014 Score=42.50 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=52.7
Q ss_pred CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCC--ccc
Q psy6638 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT--PYT 234 (273)
Q Consensus 157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~~ 234 (273)
.+|.++++.. ......|.|+++.. ...-..|.|+|+..+...+... ..... .....+.+++.. +..
T Consensus 23 p~P~nv~~~s---~nf~~iL~W~~~~~---~~~~~~ytVq~~~~~~~~W~~v----~~C~~--i~~~~Cdlt~~~~~~~~ 90 (107)
T PF01108_consen 23 PAPQNVTVDS---VNFKHILRWDPGPG---SPPNVTYTVQYKKYGSSSWKDV----PGCQN--ITETSCDLTDETSDPSE 90 (107)
T ss_dssp SSCEEEEEEE---ETTEEEEEEEESTT---SSSTEEEEEEEEESSTSCEEEE----CCEEE--ESSSEEECTTCCTTTTS
T ss_pred CCCCeeEEEE---ECCceEEEeCCCCC---CCCCeEEEEEEEecCCcceeec----cceec--ccccceeCcchhhcCcC
Confidence 3788999876 46678999999655 2345789999994443322111 11111 113577776643 678
Q ss_pred eEEEEEEEecCCCcCC
Q psy6638 235 KYAIVVRGYNSVGKGP 250 (273)
Q Consensus 235 ~Y~~~v~a~n~~g~~~ 250 (273)
.|.+||+|......|.
T Consensus 91 ~Y~~rV~A~~~~~~S~ 106 (107)
T PF01108_consen 91 SYYARVRAEVGNQTSD 106 (107)
T ss_dssp EEEEEEEEEETTEEEE
T ss_pred CEEEEEEEEeCCccCC
Confidence 9999999997654443
No 87
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=97.49 E-value=0.00025 Score=43.81 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=30.9
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
...|.|.++.++|.|.|+|.|.|..|.....+.+.
T Consensus 50 ~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 50 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 34799999999999999999999999988877665
No 88
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=97.48 E-value=0.00026 Score=43.38 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.7
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
...|.|.++.++|.|.|+|.|.|..|.....+.+.
T Consensus 47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 47 KWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 46899999999999999999999999877766654
No 89
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=97.46 E-value=0.00026 Score=42.83 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=26.2
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~ 46 (273)
..|.|.++.++|.|.|.|.|.|.+|....
T Consensus 38 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 38 RTLTLRSAGPDDSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred CEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence 37999999999999999999999998654
No 90
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.45 E-value=0.00046 Score=41.98 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=28.6
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
.|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus 46 ~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 46 EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred EEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 699999999999999999999998876665543
No 91
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.45 E-value=0.00047 Score=42.62 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=30.1
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
.|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus 52 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05728 52 DLRITKLSLSDSGMYQCVAENKHGTIYASAELA 84 (85)
T ss_pred EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence 699999999999999999999999988877665
No 92
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=97.43 E-value=0.00049 Score=41.27 Aligned_cols=34 Identities=38% Similarity=0.496 Sum_probs=28.3
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV 52 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~ 52 (273)
.|.|.++..+|.|.|+|.|.|..|.... .+.+.+
T Consensus 39 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 39 ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 6999999999999999999999998643 555543
No 93
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.40 E-value=0.00072 Score=41.68 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=30.0
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCC--CceeEEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHG--TAEMTIQLLV 52 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g--~~~~~~~~~~ 52 (273)
..+.|.|.+++.+|.|.|.|.|.|..+ ....++.+.|
T Consensus 44 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V 82 (84)
T cd05861 44 LRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV 82 (84)
T ss_pred EEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence 467999999999999999999998776 4445665554
No 94
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.32 E-value=0.00053 Score=42.45 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=32.5
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~ 53 (273)
..++|.|.++...|.|.|+|.|.|..|.......+.+.
T Consensus 48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 46789999999999999999999998877777666653
No 95
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.30 E-value=0.0019 Score=44.17 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=34.7
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~ 57 (273)
.|.|.+++..|.|.|.|.+.+..|.....+.+.+..+|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~ 40 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR 40 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc
Confidence 689999999999999999999888888888888887765
No 96
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=97.29 E-value=0.00088 Score=41.43 Aligned_cols=32 Identities=41% Similarity=0.583 Sum_probs=27.5
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEM-TIQL 50 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~ 50 (273)
.|.|.++.++|.|.|+|.|.|..|...+ .+.+
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l 84 (86)
T cd05724 52 NLLIAEARKSDEGTYKCVATNMVGERESAAARL 84 (86)
T ss_pred EEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence 7999999999999999999999998654 4443
No 97
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=97.19 E-value=0.0058 Score=52.50 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=65.9
Q ss_pred CccEEEecCCCCCCeEEEEEEEeCCCCCCCCCc-ceEEEecC-CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccce
Q psy6638 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGA-ELQASTLE-EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV 189 (273)
Q Consensus 112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~-~~~~~~~~-~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~ 189 (273)
....+.+.+|.+| .|.++|+|+|..|....-. ...+.... ..| +|..+.... ....-.+.+.|-.|.. .-.
T Consensus 658 ~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~P--pp~~~t~~a-~~it~~~~l~v~dPt~---~~d 730 (952)
T COG4733 658 SAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVP--PPKAMIYDA-VIITLVIRLVVGDPTG---AVD 730 (952)
T ss_pred cccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCC--CCcccccce-EEEEeeeeEEEecCCc---ceE
Confidence 4567888998885 6999999999888543222 33343332 223 222221111 0133456778877753 111
Q ss_pred eeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638 190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS 252 (273)
Q Consensus 190 i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s 252 (273)
+..-.+++....+.+.. ...+. ....-...-.+|+++..|.|+++++|..|.+.+-
T Consensus 731 ~~~sei~~s~~~d~~~~-----Ar~LG--~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~ 786 (952)
T COG4733 731 ITSTEIRSAVIADGNFQ-----ARSLG--NLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW 786 (952)
T ss_pred EeeeeeeeeccccchhH-----Hhhhh--ccccccccccCcCCCceEEEEeeecccccccccc
Confidence 22222333222211100 00000 0000111115899999999999999999986544
No 98
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.12 E-value=0.0019 Score=41.13 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.3
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV 52 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~ 52 (273)
..+|.|.+++.+|.|.|+|...+ ..|.....+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 34799999999999999999998 6777666776665
No 99
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.11 E-value=0.001 Score=41.96 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=30.3
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
..|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus 60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~ 93 (94)
T cd05756 60 DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT 93 (94)
T ss_pred CeEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence 3799999999999999999999999988777664
No 100
>KOG4194|consensus
Probab=97.03 E-value=0.011 Score=49.29 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=45.8
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEE-eeccEEEEEEeC
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE-ESSRSLQISWTA 78 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~-~~~~~~~l~W~~ 78 (273)
.+.|.++..+|.|.|+|.|.|..|.-.+.+.++|...|.+...+.-.. .-...+.|++..
T Consensus 670 ~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a 730 (873)
T KOG4194|consen 670 VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLA 730 (873)
T ss_pred EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEec
Confidence 699999999999999999999999999999999988876433332221 134456666654
No 101
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.02 E-value=0.0028 Score=40.99 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=33.4
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~ 54 (273)
.....|.|.+++.+|.|.|+|.+.+..+.....+.+.+.+
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 4567999999999999999999999877767777776654
No 102
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.01 E-value=0.0032 Score=39.81 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=26.4
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~ 50 (273)
...++|.|.++.++|.|.|.|.+.+..+. .....+
T Consensus 59 ~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~~~l 93 (95)
T cd07701 59 WHELSISISDVSLSDEGQYTCSLFTMPVK-TSKAYL 93 (95)
T ss_pred CCcEEEEECcCCcccCEEEEEEeEeecCc-cEEEEE
Confidence 34568999999999999999999984332 334444
No 103
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.01 E-value=0.0036 Score=40.84 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=32.3
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~ 54 (273)
....|.|.+++.+|.|.|+|.+.++.......+.+.+.+
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 457899999999999999999998777776677666653
No 104
>KOG4367|consensus
Probab=96.99 E-value=0.0012 Score=51.88 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=65.5
Q ss_pred eeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcce
Q psy6638 67 ESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAEL 146 (273)
Q Consensus 67 ~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~ 146 (273)
..++++++.|..|.....+..+|.++.....+. .....+.+..+.+++.+|.=++.|..||.+.|..|.+.++..+
T Consensus 450 t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g----~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl 525 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLSTVPADGYILELDDGNGG----QFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 525 (699)
T ss_pred ccCCceEEEeecCCCCCCCCcceEEEeecCCCC----ceeEEEecCceeEEecceecchhHHHHHHHhhccCCCccccee
Confidence 357899999996655666888999998775432 1234566788899999999999999999999999999999887
Q ss_pred EEEecC
Q psy6638 147 QASTLE 152 (273)
Q Consensus 147 ~~~~~~ 152 (273)
...+..
T Consensus 526 ~lqts~ 531 (699)
T KOG4367|consen 526 VLQTSE 531 (699)
T ss_pred Eeeecc
Confidence 766643
No 105
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=96.94 E-value=0.0037 Score=39.92 Aligned_cols=37 Identities=30% Similarity=0.294 Sum_probs=29.8
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~ 52 (273)
...+|.|.+++.+|.|.|+|.+.+..+.....+.+.+
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 4568999999999999999999987666555655543
No 106
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.92 E-value=0.0042 Score=39.10 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=26.4
Q ss_pred EEEEeeee-eCCCEEEEEEEEcCCCCcee-EEEE
Q psy6638 19 ELGIANVL-RQDSGTLSCLATNYHGTAEM-TIQL 50 (273)
Q Consensus 19 ~l~i~~~~-~~~~~~y~~~a~n~~g~~~~-~~~~ 50 (273)
.|.|.++. ..|.|.|+|.|.|..|...+ .+.+
T Consensus 58 ~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 58 NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 69999885 68999999999999998765 4443
No 107
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.90 E-value=0.0038 Score=40.38 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=32.9
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~ 54 (273)
....|.|.+++.+|.|.|+|.+.+..+.....+.+.|.+
T Consensus 66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 356899999999999999999999888877777776643
No 108
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.89 E-value=0.0072 Score=39.05 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=52.0
Q ss_pred CCcceEEEEeeccEEEEEEeCCC-----CCCc-------cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCC
Q psy6638 58 APKNIRITEESSRSLQISWTAPY-----SGNT-------AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT 125 (273)
Q Consensus 58 ~p~~~~~~~~~~~~~~l~W~~~~-----~~~~-------~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (273)
||. +.+ ....+.+.+.+.+|. .... ....|.|.+...+.. ............+.+.+|.|++
T Consensus 5 PP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~----~~~~~~~~~~~~~~l~~L~p~t 78 (106)
T PF09294_consen 5 PPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN----EKKKEIETKNSSVTLSDLKPGT 78 (106)
T ss_dssp SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS----CEEEEEESSSEEEEEES--TTS
T ss_pred CCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc----cceEEEeecCCEEEEeCCCCCC
Confidence 444 555 456788888888775 1110 235799998876654 1223344456677899999999
Q ss_pred eEEEEEEEeC--CCCCCCCCcceEEE
Q psy6638 126 QYQVRLLAEN--PLGMSETGAELQAS 149 (273)
Q Consensus 126 ~y~~~v~a~~--~~g~~~~s~~~~~~ 149 (273)
.|-++|++.. ....|.+|.+..+.
T Consensus 79 ~YCv~V~~~~~~~~~~s~~S~~~C~~ 104 (106)
T PF09294_consen 79 NYCVSVQAFSPSQNKNSQPSEPQCIT 104 (106)
T ss_dssp EEEEEEEEEECSSTEEEEEBSEEEEE
T ss_pred CEEEEEEEEeccCCCcCCCCCCEeEe
Confidence 9999999932 22244555554444
No 109
>PHA02785 IL-beta-binding protein; Provisional
Probab=96.89 E-value=0.088 Score=41.74 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=65.3
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCcee----EEEEEEecCCCC-----CcceEEEEeeccEEEEEEeCCCCCCccceE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEM----TIQLLVQETPEA-----PKNIRITEESSRSLQISWTAPYSGNTAITQ 88 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~----~~~~~~~~~P~~-----p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~ 88 (273)
..|.|.++..+|.|.|+|.+.|..|.... .+.+.+..+..+ |..+ .......+.|.+.....+. +. .
T Consensus 177 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~--~~~~G~~v~L~C~a~g~P~-~~-~ 252 (326)
T PHA02785 177 GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGV--VTSIGSNLTIACRVSLRPP-TT-D 252 (326)
T ss_pred CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcE--EecCCCcEEEEEEEECCCC-CC-C
Confidence 37999999999999999999998887543 233444332222 3222 2223556777776532111 11 1
Q ss_pred EEEEEEeCCCCCCC----ccceEEe-c------C---CccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638 89 YIIQYKSSEEMWPT----QPLKIIV-P------G---SQTSATLQPLLPATQYQVRLLAENPLG 138 (273)
Q Consensus 89 y~v~~~~~~~~~~~----~~~~~~~-~------~---~~~~~~~~~l~~~~~y~~~v~a~~~~g 138 (273)
-.+.|..++..... ....... . . ....+.|.++.......|.+.|.|..|
T Consensus 253 ~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~ 316 (326)
T PHA02785 253 ADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS 316 (326)
T ss_pred ceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence 13455544321100 0001000 0 0 123577888888888899999988764
No 110
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=96.88 E-value=0.0031 Score=38.71 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=30.5
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
....|.|.++..+|.|.|.|.+.|..|.....+.+.
T Consensus 49 ~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 49 KKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred cEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 345799999999999999999999998877766554
No 111
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.85 E-value=0.0059 Score=38.57 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=27.1
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
+....|.|.+++.+|.|.|.|.+.+... ..+.+.+.
T Consensus 59 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~ 94 (95)
T cd05717 59 ANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVT 94 (95)
T ss_pred CCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEE
Confidence 3456899999999999999999987643 34444443
No 112
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=96.83 E-value=0.0017 Score=40.04 Aligned_cols=33 Identities=39% Similarity=0.469 Sum_probs=29.3
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~ 50 (273)
..|.|.++.++|.|.|.|.|.|..|.....+.+
T Consensus 52 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 52 GILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 479999999999999999999999988776654
No 113
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.82 E-value=0.15 Score=39.30 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=75.1
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE-E------ecCCCCCcceEEEEe----eccEEEEEEeCCCCCCcc
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL-V------QETPEAPKNIRITEE----SSRSLQISWTAPYSGNTA 85 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~-~------~~~P~~p~~~~~~~~----~~~~~~l~W~~~~~~~~~ 85 (273)
-..+.|.++.++..|..++...+.... ...+.+. . ...|..|.+..+... +-++++|.|.+..+. .
T Consensus 127 ~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~--~ 203 (300)
T PF10179_consen 127 LRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR--S 203 (300)
T ss_pred eEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC--C
Confidence 457888888888888888866654332 2223333 2 234677887777554 347999999975432 2
Q ss_pred ceEEEEEEEeCCCC---------CC-Cc-------cceE-E---ec--------CCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638 86 ITQYIIQYKSSEEM---------WP-TQ-------PLKI-I---VP--------GSQTSATLQPLLPATQYQVRLLAENP 136 (273)
Q Consensus 86 ~~~y~v~~~~~~~~---------~~-~~-------~~~~-~---~~--------~~~~~~~~~~l~~~~~y~~~v~a~~~ 136 (273)
..|-|..+..... +. +. .+.. + .. .....-+|.+|+||..|.|.|.+.-.
T Consensus 204 -~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~ 282 (300)
T PF10179_consen 204 -IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGP 282 (300)
T ss_pred -ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecC
Confidence 3676666543221 00 00 0000 1 11 11233478999999999999999876
Q ss_pred CCCCCCCcceEEEe
Q psy6638 137 LGMSETGAELQAST 150 (273)
Q Consensus 137 ~g~~~~s~~~~~~~ 150 (273)
.|.+-.-....+.|
T Consensus 283 ~G~sl~Y~s~~VkT 296 (300)
T PF10179_consen 283 SGQSLPYRSKWVKT 296 (300)
T ss_pred CCceeecceEEEEe
Confidence 66543333333333
No 114
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=96.81 E-value=0.0031 Score=40.33 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=55.1
Q ss_pred cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCc-----cEEEecCCCCCCeEE
Q psy6638 54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ-----TSATLQPLLPATQYQ 128 (273)
Q Consensus 54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~y~ 128 (273)
.+|..|.++...+.....+++.|++...++.+. .|.+.|...+..|............. +.+.-....-...|.
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~-~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~ 84 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGSEGNLPT-NYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYC 84 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEESSSTSTC-EEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCCCCCCCC-cEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEE
Confidence 467888888888888899999999886555443 49999988764443211111001112 233334678888999
Q ss_pred EEEEEeCCCC
Q psy6638 129 VRLLAENPLG 138 (273)
Q Consensus 129 ~~v~a~~~~g 138 (273)
++|.+.+..|
T Consensus 85 i~V~a~~~~~ 94 (104)
T PF09067_consen 85 IQVEATNALG 94 (104)
T ss_dssp EEEEEEETTE
T ss_pred EEEEeccCCC
Confidence 9999998876
No 115
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=96.80 E-value=0.0042 Score=38.94 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=28.0
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~ 50 (273)
..|.|.++..+|.|.|+|.+.|..|.....+..
T Consensus 52 ~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 52 SKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred CEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 479999999999999999999998876654443
No 116
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.78 E-value=0.0014 Score=41.24 Aligned_cols=40 Identities=28% Similarity=0.201 Sum_probs=29.3
Q ss_pred ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCC
Q psy6638 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT 43 (273)
Q Consensus 3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~ 43 (273)
.|+..+.. ..+...+.|.|.+++.+|.|.|.|.+.|..+.
T Consensus 51 ~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~ 90 (94)
T cd07690 51 DRADSRRN-LWDQGSFPLIIKNLKIEDSDTYICEVEDKKEE 90 (94)
T ss_pred CCCceecc-cCCCCeEEEEECCCCHHHCEEEEEEECCccce
Confidence 34444432 22344678999999999999999999987654
No 117
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=96.78 E-value=0.0055 Score=38.65 Aligned_cols=28 Identities=43% Similarity=0.496 Sum_probs=24.2
Q ss_pred EEEEeeee-eCCCEEEEEEEEcCCCCcee
Q psy6638 19 ELGIANVL-RQDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 19 ~l~i~~~~-~~~~~~y~~~a~n~~g~~~~ 46 (273)
.|.|.++. +.|.|.|+|.|.|..|...+
T Consensus 59 ~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 59 NLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred eEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 58888874 69999999999999998755
No 118
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=96.77 E-value=0.0038 Score=39.39 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.1
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 16 MISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
....|.|.++..+|.|.|+|.+..
T Consensus 60 ~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 60 TELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ceEEEEECCCCcccCEEEEEEEEe
Confidence 457899999999999999999987
No 119
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.75 E-value=0.0068 Score=39.49 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=33.5
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~ 54 (273)
.....|.|.+++.+|.|.|.|.+..........+.+.+.+
T Consensus 69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 69 RGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 3456899999999999999999998777777788777754
No 120
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=96.73 E-value=0.0079 Score=38.17 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=30.1
Q ss_pred ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA 44 (273)
Q Consensus 3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~ 44 (273)
.+|.-|..+ ++....|.|.+++.+|.|.|.|...+..|..
T Consensus 48 ~~f~~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~ 87 (97)
T cd05775 48 PSYKERVNF--SQNDYSLQISNLKMEDAGSYRAEINTKNGVT 87 (97)
T ss_pred CCceeeEEe--cCCceeEEECCCchHHCEEEEEEEEcCCCCe
Confidence 345445544 3445689999999999999999998876554
No 121
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=96.72 E-value=0.0085 Score=37.78 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=24.2
Q ss_pred EEEEeeee-eCCCEEEEEEEEcCCCCcee
Q psy6638 19 ELGIANVL-RQDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 19 ~l~i~~~~-~~~~~~y~~~a~n~~g~~~~ 46 (273)
.|.|.++. ..|.|.|+|.|.|..|...+
T Consensus 59 ~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 59 NLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred eEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 58888865 59999999999999998765
No 122
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.68 E-value=0.0085 Score=37.49 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=27.8
Q ss_pred EEEEeeeeeCCCEEEEEEEE-cCCCCceeEEEEEEe
Q psy6638 19 ELGIANVLRQDSGTLSCLAT-NYHGTAEMTIQLLVQ 53 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~-n~~g~~~~~~~~~~~ 53 (273)
.|.|.++.++|.|.|.|.+. +..+.....+.|.+.
T Consensus 54 ~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 54 GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence 59999999999999999998 466555556666654
No 123
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=96.68 E-value=0.0058 Score=38.25 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=28.9
Q ss_pred eeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA 44 (273)
Q Consensus 4 r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~ 44 (273)
+|.-|..+..+ ..|.|.+++.+|.|.|+|......|..
T Consensus 46 ~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~~~~~~~ 83 (92)
T cd05741 46 AYSGRETIYPN---GSLLIQNLTKEDSGTYTLQIISTNGVT 83 (92)
T ss_pred CcCCeEEEcCC---ceEEEccCCchhcEEEEEEEEcCCCcE
Confidence 44455555444 489999999999999999998876443
No 124
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=96.67 E-value=0.0042 Score=36.57 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=25.6
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQL 50 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~ 50 (273)
..|.|.++. +.|.|+|.|.|..|.....+.+
T Consensus 38 ~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 38 NVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 368898874 7899999999999988776654
No 125
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=96.66 E-value=0.0072 Score=39.25 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=32.3
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~ 54 (273)
....|+|.+++++|.|.|+|............+.|.+.+
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 467999999999999999999998766666677777654
No 126
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=96.65 E-value=0.012 Score=38.42 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=33.1
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~ 54 (273)
...|.|.+++.+|.|.|+|............+.+.+.+
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 46899999999999999999999888887788777654
No 127
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=96.65 E-value=0.21 Score=38.67 Aligned_cols=199 Identities=11% Similarity=0.046 Sum_probs=105.1
Q ss_pred eeeeeCCCEEEEEEEEcCCCCceeEEEEEE---ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCC
Q psy6638 23 ANVLRQDSGTLSCLATNYHGTAEMTIQLLV---QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM 99 (273)
Q Consensus 23 ~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~---~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~ 99 (273)
+++.....+.|.+.+.+..+.-..++...- ...|..-.++++.....+.+.|+|+.+.. ...|.|+....+..
T Consensus 129 s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~----~~yy~IY~~~~g~e 204 (343)
T COG3401 129 SDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA----EDYYRIYASDSGNE 204 (343)
T ss_pred cccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccc----cceEEEeccCCccc
Confidence 366677788888888876665544433221 22232333444555667889999987643 22788887665432
Q ss_pred CCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC-CCCCCcceEEEecCCCCCC--CCeeEEecCCccCCceEEE
Q psy6638 100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG-MSETGAELQASTLEEAPNG--APREVTSDPGVVDPTELLI 176 (273)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g-~~~~s~~~~~~~~~~~p~~--~p~~~~~~~~~~~~~~i~l 176 (273)
-. ........+.+...--..|..|.+.|.++...| .+..+...........+.. +|... .....+.|
T Consensus 205 ~~----~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t------~~~s~i~V 274 (343)
T COG3401 205 EY----GFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGET------TEASFIGV 274 (343)
T ss_pred cc----cceeeccccchhhhhhccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCce------eeeeeeeE
Confidence 11 111111222332222234777888888876444 4443332222222222211 22111 12334557
Q ss_pred EEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638 177 KWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250 (273)
Q Consensus 177 ~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~ 250 (273)
.|...... ....|.+.....+..- .+... .........+.++..|.+.|.+++..|.+.
T Consensus 275 ~~E~~~~~----~av~ytvyr~~~g~~~------~~f~i-----t~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 275 AAEQNQLR----QAVTYTVYRVEDGTPT------KFFTI-----TETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred Eecccccc----eeeEEeeeeccCCCcc------eeeee-----eeccccchhhccccceeEEEEEeccccccc
Confidence 77776431 2345555544432210 11111 134566778889999999999999988753
No 128
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=96.62 E-value=0.0089 Score=37.74 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=25.7
Q ss_pred EEEEeee-----eeCCCEEEEEEEEcC-CCCcee-EEEEE
Q psy6638 19 ELGIANV-----LRQDSGTLSCLATNY-HGTAEM-TIQLL 51 (273)
Q Consensus 19 ~l~i~~~-----~~~~~~~y~~~a~n~-~g~~~~-~~~~~ 51 (273)
.+.|.++ .+.|.|.|+|.|.|. .|...+ .+.+.
T Consensus 55 ~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 55 SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEe
Confidence 4677776 588999999999999 998754 55543
No 129
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=96.59 E-value=0.005 Score=37.15 Aligned_cols=29 Identities=34% Similarity=0.382 Sum_probs=23.8
Q ss_pred EEEEEeeeee----CCCEEEEEEEEcCCCCcee
Q psy6638 18 SELGIANVLR----QDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 18 ~~l~i~~~~~----~~~~~y~~~a~n~~g~~~~ 46 (273)
..|.|.++.. +|.|.|+|.|.|..|...+
T Consensus 39 g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 39 GTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 3688888754 6899999999999998655
No 130
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.56 E-value=0.0068 Score=39.03 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=28.8
Q ss_pred eEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638 5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHG 42 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g 42 (273)
|.-|..+..+| +|.|.+++.+|.|.|+|.+.+..+
T Consensus 60 ~~gR~~~~~ng---SL~I~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 60 YSGRETIYPNG---SLLIQNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred cCCcEEEeCCC---cEEEecCCcccCEEEEEEEEeCCc
Confidence 34456666677 899999999999999999998763
No 131
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=96.53 E-value=0.011 Score=37.35 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=30.4
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV 52 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~ 52 (273)
...+|.|.+++.+|.|.|+|...+ ..|+..+...+.+
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 356899999999999999999754 7788877777654
No 132
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=96.50 E-value=0.0044 Score=38.03 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=26.1
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~ 46 (273)
...|.|.++..+|.|.|+|.+.+..|...+
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred CceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 458999999999999999999999875543
No 133
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.45 E-value=0.0091 Score=37.60 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=28.3
Q ss_pred cceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 2 ~~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
|.||.... ..+...+|.|.+++.+|.|.|.|.+..
T Consensus 49 d~Rf~~~~---~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 49 DSRFQLVN---FSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CcCEEEEe---CCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 56776542 246788999999999999999999875
No 134
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=96.44 E-value=0.017 Score=36.89 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=29.6
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV 52 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~ 52 (273)
....|.|.+++.+|.|.|.|.+.+ ..|.....+.|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 355799999999999999999987 6676655666554
No 135
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=96.42 E-value=0.02 Score=36.32 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=29.7
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV 52 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~ 52 (273)
....|.|.+++.+|.|.|.|.+.+ ..|.......+.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 456899999999999999999875 5677666666654
No 136
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=96.39 E-value=0.017 Score=36.64 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=26.3
Q ss_pred cCCcEEEEEEee--eeeCCCEEEEEEEEcCCCCce-eEEEEEE
Q psy6638 13 EDGMISELGIAN--VLRQDSGTLSCLATNYHGTAE-MTIQLLV 52 (273)
Q Consensus 13 ~~~~~~~l~i~~--~~~~~~~~y~~~a~n~~g~~~-~~~~~~~ 52 (273)
.++....+.|.. ...+|.|.|+|.|.|..|... ..+.+.+
T Consensus 57 ~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 57 PSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred cCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 344333344432 368999999999999999844 3555543
No 137
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=96.36 E-value=0.0072 Score=35.87 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=23.9
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~ 46 (273)
.|.|.++..+|.|.|+|.|.|.......
T Consensus 37 ~L~I~~v~~~D~G~YtC~a~~~~~~~~~ 64 (72)
T cd07702 37 SLVIKDVTEEDAGIYTILLGIKQYNLFK 64 (72)
T ss_pred EEEECcCCHHHCEEEEEEEEccccceEe
Confidence 6999999999999999999997544433
No 138
>PLN02533 probable purple acid phosphatase
Probab=96.15 E-value=0.14 Score=42.16 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=53.7
Q ss_pred CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE----ecCCcccEEEcCCC
Q psy6638 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE----LDNQYEGELRIPGL 230 (273)
Q Consensus 155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~L 230 (273)
.+..|..+++.. .+++++.|+|.-.... .+ .|+|-...+.-.....-...... ........+.|.+|
T Consensus 40 ~~~~P~qvhls~--~~~~~m~V~W~T~~~~---~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L 110 (427)
T PLN02533 40 DPTHPDQVHISL--VGPDKMRISWITQDSI---PP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPL 110 (427)
T ss_pred CCCCCceEEEEE--cCCCeEEEEEECCCCC---CC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCC
Confidence 334677888776 6788999999987642 11 34444322111000000001110 11222356789999
Q ss_pred CccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638 231 TPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262 (273)
Q Consensus 231 ~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~ 262 (273)
+|++.|.++|- ....++...|+|++.
T Consensus 111 ~p~T~Y~Yrvg------~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 111 KPNTVYYYKCG------GPSSTQEFSFRTPPS 136 (427)
T ss_pred CCCCEEEEEEC------CCCCccceEEECCCC
Confidence 99999999984 122466788998764
No 139
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=96.12 E-value=0.25 Score=38.31 Aligned_cols=164 Identities=11% Similarity=0.034 Sum_probs=89.2
Q ss_pred eccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceE
Q psy6638 68 SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQ 147 (273)
Q Consensus 68 ~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~ 147 (273)
....+.+-|.+.. +-+...|.|+.......+.+... ..++-.-.+...++.++..|.+.|.+.+..+.-..+....
T Consensus 82 ~~~~~~~~w~~~~--d~~~~~Y~i~~~~gD~~f~r~~~--~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gV 157 (343)
T COG3401 82 RPKSVKVFWSPHP--DVSVGKYIIQRQNGDGKFLRTGL--VKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGV 157 (343)
T ss_pred CcceeeecccccC--CCCCCeEEEEEecCchhhhhhhH--HHhccchhheecccccccceeeeEEeecccccceeeeeee
Confidence 4556899999754 33567899988765543221111 1111112334457899999999999987766333332111
Q ss_pred EEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc
Q psy6638 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI 227 (273)
Q Consensus 148 ~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 227 (273)
-.+....|+ .-.++++.. ...+.+.|+|+.++..+ .|+|+-...+...... ..+ .. ++.+..
T Consensus 158 E~~~~~~P~-ei~~~~~~~--d~~~~i~ls~dg~~~~~------yy~IY~~~~g~e~~~~---ia~----t~--~n~y~d 219 (343)
T COG3401 158 EATPKAEPK-EITNVRVSF--DLGNNIELSEDGSEAED------YYRIYASDSGNEEYGF---IAQ----TT--ENSYYD 219 (343)
T ss_pred ecccccCCc-eeeeeeeec--CCCCcceeeccCccccc------eEEEeccCCccccccc---eee----cc--ccchhh
Confidence 111122221 222344544 67788999999987621 7787766655432111 111 11 122222
Q ss_pred CCCCccceEEEEEEEecCC-CcCCCCc
Q psy6638 228 PGLTPYTKYAIVVRGYNSV-GKGPFSE 253 (273)
Q Consensus 228 ~~L~p~~~Y~~~v~a~n~~-g~~~~s~ 253 (273)
.--.-|..|.+.|.+++.. .++..+.
T Consensus 220 ~~eglga~~~y~VTtVd~~~~es~lp~ 246 (343)
T COG3401 220 VKEGLGAVEYYKVTTVDNTGFESDLPN 246 (343)
T ss_pred hhhccCceeEEEEEEEcCCcceeccCC
Confidence 2222377888888888744 4465554
No 140
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=96.12 E-value=0.015 Score=35.01 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=22.4
Q ss_pred EEEEeeeeeC----CCEEEEEEEEcCCCCcee
Q psy6638 19 ELGIANVLRQ----DSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 19 ~l~i~~~~~~----~~~~y~~~a~n~~g~~~~ 46 (273)
.|.|..+... |.|.|+|.|.|..|...+
T Consensus 40 ~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 40 TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 5777766643 789999999999998765
No 141
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=96.08 E-value=0.02 Score=34.54 Aligned_cols=29 Identities=31% Similarity=0.274 Sum_probs=23.1
Q ss_pred EEEEEeeeee----CCCEEEEEEEEcCCCCcee
Q psy6638 18 SELGIANVLR----QDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 18 ~~l~i~~~~~----~~~~~y~~~a~n~~g~~~~ 46 (273)
.+|.|..+.. +|.|.|+|.|.|..|...+
T Consensus 39 ~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 39 GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred ceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 3788887642 3689999999999997765
No 142
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=96.06 E-value=0.01 Score=37.10 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=23.9
Q ss_pred EEEEeeeee-CCCEEEEEEEEcCCCCcee
Q psy6638 19 ELGIANVLR-QDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 19 ~l~i~~~~~-~~~~~y~~~a~n~~g~~~~ 46 (273)
.|.|.++.. .|.|.|+|.|.|..|...+
T Consensus 59 ~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 59 NLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 688888774 8999999999999997654
No 143
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.00 E-value=0.03 Score=35.51 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=32.8
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~ 53 (273)
-.+.|.+..+...+.|.|+|.|.|..+.....+.+.++
T Consensus 63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 46789999999999999999999998888777776653
No 144
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=95.92 E-value=0.013 Score=33.15 Aligned_cols=26 Identities=42% Similarity=0.565 Sum_probs=23.1
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHG 42 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g 42 (273)
...|.|.++...|.|.|+|.+.|..|
T Consensus 38 ~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 38 GSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CcEEEEeeCCcccCEEEEEEEecCCC
Confidence 44799999999999999999998765
No 145
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=95.90 E-value=0.024 Score=35.25 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=26.4
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCC-ceeEEEEEEe
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGT-AEMTIQLLVQ 53 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~-~~~~~~~~~~ 53 (273)
.|.|.++.++|.|.|+|.|.+..+. ......+.|.
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 4999999999999999999876443 3345555543
No 146
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=95.89 E-value=0.064 Score=32.36 Aligned_cols=35 Identities=49% Similarity=0.594 Sum_probs=28.5
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
...|.|.++...|.|.|.|.+.+..+.....+.+.
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00410 50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 57899999999999999999998776655554443
No 147
>smart00409 IG Immunoglobulin.
Probab=95.89 E-value=0.064 Score=32.36 Aligned_cols=35 Identities=49% Similarity=0.594 Sum_probs=28.5
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
...|.|.++...|.|.|.|.+.+..+.....+.+.
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00409 50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 57899999999999999999998776655554443
No 148
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=95.89 E-value=0.031 Score=36.73 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.9
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCC
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGT 43 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~ 43 (273)
....|.|.+++.+|.|.|.|.+.|..+.
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 77 RDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 3567999999999999999999986543
No 149
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=95.78 E-value=0.038 Score=36.35 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.8
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHG 42 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g 42 (273)
.+.|.|.+++.+|.|.|.|.+.|.-.
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 46899999999999999999987543
No 150
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=95.75 E-value=0.036 Score=33.75 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.8
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~ 46 (273)
..+.|.|.++. |.|.|.|.|.|.+|...+
T Consensus 47 ~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 47 SPSVLNVPGLN--ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence 44579998874 679999999999997765
No 151
>KOG4806|consensus
Probab=95.74 E-value=0.72 Score=36.05 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=77.1
Q ss_pred ecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec---CCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEE
Q psy6638 118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTL---EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYD 194 (273)
Q Consensus 118 ~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~---~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~ 194 (273)
-..+.++..|.++++..|+.-.- ...-+...+. ..-| .-|.+-++..-...-++.+|.|....+. -.+|-
T Consensus 288 Qfvv~~~~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P-~LP~dTtVk~v~r~CSsAtIaW~gs~d~-----~~kyC 360 (454)
T KOG4806|consen 288 QFVVLPGERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLP-ELPQDTTVKNVRRRCSSATIAWNGSPDE-----ELKYC 360 (454)
T ss_pred EEEecCCCceEEEEEecCCchhh-heeEeeeecccccCcCC-CCCCCceEeeeccccchheeeeccCcch-----heeEE
Confidence 34577899999999998875321 1111222221 1223 3455544433114567889999988763 24777
Q ss_pred EEEEEcCCCCcc---------------ceeeeeeeEE------ecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCc
Q psy6638 195 VGYQISSGSSLA---------------LSSYTLKSVE------LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253 (273)
Q Consensus 195 v~~~~~~~~~~~---------------~~~~~~~~~~------~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~ 253 (273)
|+.+...+.+.. ...+..-... .....-..-+|.||.||..|.+.|.|.-..|..-+-.
T Consensus 361 Iy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyq 440 (454)
T KOG4806|consen 361 IYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQ 440 (454)
T ss_pred EEEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCccccce
Confidence 777665432210 0000000000 0111223468999999999999999998887766555
Q ss_pred cEEEEcC
Q psy6638 254 PFIARTN 260 (273)
Q Consensus 254 ~~~~~t~ 260 (273)
.+.+.|.
T Consensus 441 a~~v~t~ 447 (454)
T KOG4806|consen 441 ALTVHTA 447 (454)
T ss_pred eEEEEec
Confidence 5666654
No 152
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=95.69 E-value=0.035 Score=34.94 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.7
Q ss_pred EEEEEeeeeeCCCEEEEEEEEcCCCCce
Q psy6638 18 SELGIANVLRQDSGTLSCLATNYHGTAE 45 (273)
Q Consensus 18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~ 45 (273)
+.|.|.++.++|.|.|+|.+.+..|...
T Consensus 55 ~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 55 TYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred CEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 4699999999999999999999876653
No 153
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=95.63 E-value=0.027 Score=33.32 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=25.5
Q ss_pred EEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 8 REQVLEDGMISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 8 ~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
..........+.|.|.++..+|.|.|+|.|.|
T Consensus 44 ~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 44 SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 33334445577899999999999999999986
No 154
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=95.62 E-value=0.026 Score=36.56 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.2
Q ss_pred ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH 41 (273)
Q Consensus 3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~ 41 (273)
+||.+... .....+.|.|.+++.+|.|.|.|.+.+..
T Consensus 57 ~r~~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 57 GRFSATLD--KSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CcEEEEEc--ccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 45554332 23467899999999999999999998754
No 155
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=95.53 E-value=0.024 Score=34.30 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
...|.|.++ .+|.|.|+|.|.|.
T Consensus 46 ~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 46 TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCeEEEeec-ccCCEEeEEECCCC
Confidence 447999999 99999999999875
No 156
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=95.51 E-value=0.065 Score=33.84 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=27.6
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEE
Q psy6638 16 MISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQL 50 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~ 50 (273)
...+|.|.+++.+|.|.|+|...+ ..|...+.+.+
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 346899999999999999999876 46666665544
No 157
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=95.33 E-value=0.09 Score=33.28 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=28.4
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV 52 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~ 52 (273)
...+.|.|.+++.+|.|.|.|.... ..|.....+.|.|
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 3567899999999999999999764 5555555555543
No 158
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=95.26 E-value=0.087 Score=34.63 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHG 42 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g 42 (273)
..++.|.+++.+|.|.|+|.+.|.-+
T Consensus 79 daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 79 DGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred eeEEEEccCCcccCEEEEEEEEcCCC
Confidence 45899999999999999999998654
No 159
>KOG3632|consensus
Probab=95.14 E-value=0.024 Score=49.81 Aligned_cols=172 Identities=15% Similarity=0.061 Sum_probs=100.0
Q ss_pred EEEeeccEEEEEEeCCCC--CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCC-CCCeEEEEEEEeCCCCCC
Q psy6638 64 ITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL-PATQYQVRLLAENPLGMS 140 (273)
Q Consensus 64 ~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~y~~~v~a~~~~g~~ 140 (273)
+....+.++.+.|.+|.. ...++..|.+..-..- ......++.+...++.|. .+..|.+.|.+....|..
T Consensus 586 ~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~el-------rq~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsq 658 (1335)
T KOG3632|consen 586 AVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMEL-------RQTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQ 658 (1335)
T ss_pred hhhhhccceeeeccCCCCCCccccceeeeeecchhh-------hhhcccccchHHHHhhccccCCceeeehhhhhccCCC
Confidence 344567789999998753 2334444544322110 111222333333344443 233577888888888865
Q ss_pred CCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCC
Q psy6638 141 ETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQ 220 (273)
Q Consensus 141 ~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (273)
.....+ ..+...++ ..|.++.+.. .+..+..++|-+-... .-++.|...... .....
T Consensus 659 d~lrc~-Llvgg~a~-vvpsqlrv~n--~tqtSa~itwvp~nsn-------~~Hviyln~eE~------------~ps~a 715 (1335)
T KOG3632|consen 659 DQLRCI-LLVGGAAP-VVPSQLRVWN--ATQTSAMITWVPFNSN-------FLHVIYLNAEEP------------RPSVA 715 (1335)
T ss_pred Ccceee-Eecccccc-ccchhhhhhh--hhchhhheeeeecCCC-------cceeeecCCccC------------CCchh
Confidence 544433 22333344 4777888888 8999999999987542 223444333221 11112
Q ss_pred cccEEEcCCCCccceEEEEEEEecCC-C--------cCCCCccEEEEcCCCCCc
Q psy6638 221 YEGELRIPGLTPYTKYAIVVRGYNSV-G--------KGPFSEPFIARTNEGDFL 265 (273)
Q Consensus 221 ~~~~~~i~~L~p~~~Y~~~v~a~n~~-g--------~~~~s~~~~~~t~~~~P~ 265 (273)
....+++.+|.|++.|.++|-+.-.. + .+.....+.|+|.+..|+
T Consensus 716 ~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGpp 769 (1335)
T KOG3632|consen 716 EMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPP 769 (1335)
T ss_pred hhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCC
Confidence 23467899999999999999988651 1 122355688888876554
No 160
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=95.04 E-value=0.1 Score=33.24 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=27.3
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
.|.|..+..+|.|.|+|.+.|.-......+.+.
T Consensus 71 ~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 71 SIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence 699999999999999999999876665555443
No 161
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=95.01 E-value=0.075 Score=32.87 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEeeeeeCCCEEEEEEEEcC
Q psy6638 19 ELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
.|.|.++..+|.|.|+|.|.+.
T Consensus 49 ~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 49 GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cEEEeCCCHHHCEEEEEEEEec
Confidence 4999999999999999999876
No 162
>KOG4228|consensus
Probab=95.00 E-value=0.31 Score=43.98 Aligned_cols=202 Identities=17% Similarity=0.133 Sum_probs=106.0
Q ss_pred EEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecC
Q psy6638 32 TLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111 (273)
Q Consensus 32 ~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~ 111 (273)
.|+|.+....|.+.....+.+..-|..|....+.........+.|..... ....|.+.++......... ...
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~~~~~----~~~- 72 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSGYGYI----DVD- 72 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccCccee----ecc-
Confidence 38899998888888888888876666555555666677778888876532 2334444444322211100 000
Q ss_pred CccEEEecCCCCCCeEE----------------------------------------------------EEEEEeCCCCC
Q psy6638 112 SQTSATLQPLLPATQYQ----------------------------------------------------VRLLAENPLGM 139 (273)
Q Consensus 112 ~~~~~~~~~l~~~~~y~----------------------------------------------------~~v~a~~~~g~ 139 (273)
....+....+.+...+. +.+.+....|.
T Consensus 73 ~~~~~s~~~~~~~~~~~~~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1087)
T KOG4228|consen 73 LTTRLSYPCLSPPSFLELVEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVGPLAIASPGL 152 (1087)
T ss_pred ceeecccCCCCCcchhhhhhcccccccccccccCCccccccccccccchhhhhhhhhhhccCcccccccccccccCCccc
Confidence 00001111111111111 11222333333
Q ss_pred CCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecC
Q psy6638 140 SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDN 219 (273)
Q Consensus 140 ~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~ 219 (273)
+..+..+.+.+....|..+. .. .....++++|.++.. ..+..|.+.+...+... ......
T Consensus 153 ~~~~t~i~i~~~~~~p~~~~-----~~--~~~~~it~~w~~~~~----~~~~~ykl~~~~~d~~~---------~~~v~~ 212 (1087)
T KOG4228|consen 153 GPPSTYIQITTNANSPIQPG-----EE--EEYTTITGSWSPPHA----VSLDTYKLLHLDPDTGY---------EISVTL 212 (1087)
T ss_pred CCCCceEEEeccCCCCCCCC-----cc--eEEEEEEecCCCCCc----ccchhhhhhhcCCcccc---------eeeeec
Confidence 33333444444444443332 22 456788999998864 45678888877663221 111111
Q ss_pred CcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638 220 QYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261 (273)
Q Consensus 220 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~ 261 (273)
.........++.+...|.++..+....+.+.....+..++..
T Consensus 213 ~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~~ 254 (1087)
T KOG4228|consen 213 TPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQLQ 254 (1087)
T ss_pred cCCCCCcccCCCCcccccccccCccccccCCCCcceEEEehh
Confidence 112345556677778888888888776666555556665543
No 163
>PHA03376 BARF1; Provisional
Probab=94.83 E-value=0.19 Score=35.60 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=29.4
Q ss_pred eEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638 5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH 41 (273)
Q Consensus 5 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~ 41 (273)
|.-+..+.+++...+|.|.+++++|+|.|+|...-..
T Consensus 74 yRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge 110 (221)
T PHA03376 74 FRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGE 110 (221)
T ss_pred cccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCC
Confidence 3344455566778899999999999999999988654
No 164
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=94.79 E-value=0.19 Score=32.18 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=53.2
Q ss_pred CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecC-CcccE-----EEcC
Q psy6638 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDN-QYEGE-----LRIP 228 (273)
Q Consensus 155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~i~ 228 (273)
|+..|.++..-. .+...++.-|++.... + .-..|.+.|...+.. ++....-. ....+ ..+.
T Consensus 7 ~p~~P~~~~C~S--~~~etftC~W~~g~~~--~-l~~~y~L~Y~~~~~~--------~~eCp~~~~~~~ns~~~~~C~F~ 73 (104)
T PF09067_consen 7 PPEKPENLKCFS--REMETFTCFWEPGSEG--N-LPTNYTLFYKKEGEE--------WKECPDYSTSGPNSTVRHICYFP 73 (104)
T ss_dssp HCCCCEEEEEEB--SSSS-EEEEEEEESSS--T-STCEEEEEEEETTSE--------EEEESESSTTETTEEEEEEEEE-
T ss_pred CCCCCccCccCC--CCCCcEEEEeeCCCCC--C-CCCcEEEEEEeCCCC--------CccCCCeEecCCCCceeEEEEcC
Confidence 556888888877 7888999999998763 2 223499999987631 22322111 11122 3444
Q ss_pred --CCCccceEEEEEEEecCCCc
Q psy6638 229 --GLTPYTKYAIVVRGYNSVGK 248 (273)
Q Consensus 229 --~L~p~~~Y~~~v~a~n~~g~ 248 (273)
+..-.+.|.++|.|.|..|.
T Consensus 74 ~~~t~lf~~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 74 KSDTSLFVPYCIQVEATNALGS 95 (104)
T ss_dssp CCGCSSSSEEEEEEEEEETTEE
T ss_pred CCCeEEEEEEEEEEEeccCCCc
Confidence 67788899999999998764
No 165
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=94.45 E-value=0.064 Score=33.83 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.2
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTA 44 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~ 44 (273)
.|.|.+++++|.|.|.|.|.|.....
T Consensus 61 ~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 61 NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred cEEEeecCHhhCceeEEEEEecccCC
Confidence 79999999999999999999976443
No 166
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.40 E-value=0.053 Score=34.77 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.2
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHG 42 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g 42 (273)
....|.|.+++++|.|.|.|.+.+..+
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 577999999999999999999987654
No 167
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=94.38 E-value=0.084 Score=33.47 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=26.2
Q ss_pred ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
+||... .++....|.|.+++++|.|.|.|.+.+
T Consensus 52 ~rf~~~----~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 52 DRFSGS----KSGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCEEEE----ccCCEEEEEECCCChhhCEEEEEEEcc
Confidence 355543 355678899999999999999998864
No 168
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=94.14 E-value=0.089 Score=33.10 Aligned_cols=25 Identities=36% Similarity=0.202 Sum_probs=22.3
Q ss_pred EEEEeeeeeCCCE-EEEEEEEcCCCC
Q psy6638 19 ELGIANVLRQDSG-TLSCLATNYHGT 43 (273)
Q Consensus 19 ~l~i~~~~~~~~~-~y~~~a~n~~g~ 43 (273)
.|.|.++++.|.| .|.|.|.|....
T Consensus 59 nL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 59 NLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred eEEEEEEehhhCCCCeEEEEEccccc
Confidence 8999999999999 899999987533
No 169
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=93.98 E-value=0.047 Score=31.30 Aligned_cols=19 Identities=47% Similarity=0.807 Sum_probs=17.7
Q ss_pred EEEEeeeeeCCCEEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLA 37 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a 37 (273)
.|.|.++.++|.|.|+|.|
T Consensus 46 ~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 46 RLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEESSCTGGGTEEEEEEE
T ss_pred EEEEccCCHHHCEEEEEEC
Confidence 3999999999999999986
No 170
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.71 E-value=0.11 Score=33.58 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
.+....|.|.+++++|.|.|.|.+.+.
T Consensus 67 ~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 67 SGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred cCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 456778999999999999999998653
No 171
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=93.69 E-value=0.074 Score=34.50 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.3
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
....+|.|.+++.+|.|.|.|.+...
T Consensus 76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 76 QNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTEEEEEESSESGGGEEEEEEEEEES
T ss_pred CCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 34779999999999999999999876
No 172
>smart00406 IGv Immunoglobulin V-Type.
Probab=93.67 E-value=0.086 Score=31.74 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred CcEEEEEEeeeeeCCCEEEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCL 36 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~ 36 (273)
....+|.|.+++++|.|.|.|.
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEc
Confidence 5678899999999999999995
No 173
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=93.59 E-value=1.2 Score=28.34 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=48.0
Q ss_pred CcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEec-CCccEEEecCCCC----CCeEEEEEEE
Q psy6638 59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP-GSQTSATLQPLLP----ATQYQVRLLA 133 (273)
Q Consensus 59 p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~----~~~y~~~v~a 133 (273)
|+++...-.....+.++|.+..... +-+.|.+.++................ +....+.+..... ...|.+.|.+
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~~-~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ 80 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEAP-PDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNG 80 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTCS-TTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCCC-CcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEe
Confidence 5667766667889999999764433 45689999888654322222222222 2344555554444 3468888888
Q ss_pred eCCCC
Q psy6638 134 ENPLG 138 (273)
Q Consensus 134 ~~~~g 138 (273)
.+..|
T Consensus 81 ss~~~ 85 (99)
T PF09240_consen 81 SSSAG 85 (99)
T ss_dssp EETTE
T ss_pred ccCCC
Confidence 77655
No 174
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=93.58 E-value=0.16 Score=30.36 Aligned_cols=23 Identities=48% Similarity=0.637 Sum_probs=20.6
Q ss_pred EEEeeeeeCCCEEEEEEEEcCCC
Q psy6638 20 LGIANVLRQDSGTLSCLATNYHG 42 (273)
Q Consensus 20 l~i~~~~~~~~~~y~~~a~n~~g 42 (273)
+.|..+..++.|.|+|.+.+..+
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTE
T ss_pred eeeeeeccccCEEEEEEEEeCCC
Confidence 77889999999999999998665
No 175
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=93.53 E-value=0.38 Score=29.58 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.1
Q ss_pred EEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638 20 LGIANVLRQDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 20 l~i~~~~~~~~~~y~~~a~n~~g~~~~ 46 (273)
|.|..+.++|.|.|.|.+. ..|....
T Consensus 49 LlI~~~~~~dsG~Y~C~s~-E~gf~~~ 74 (85)
T cd05872 49 LLILVTSPEHSGTYRCYSE-EEGFQQL 74 (85)
T ss_pred CEEEECCHhhCEEEEEEEe-cCCCeEE
Confidence 8899999999999999987 3444443
No 176
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=93.43 E-value=0.17 Score=31.59 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.8
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
+....|.|.++.++|.|.|+|...+.
T Consensus 50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 50 QNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ceeEEEEccCCChhHCEEEEEEEECC
Confidence 44567999999999999999999875
No 177
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=93.40 E-value=0.15 Score=33.14 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=23.1
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYH 41 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~ 41 (273)
..++|.|.+++++|.|.|.|.+.+..
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CccEEEECCCChhhCEEEEEEeeCCC
Confidence 57899999999999999999988643
No 178
>KOG4152|consensus
Probab=93.35 E-value=0.1 Score=42.76 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=30.4
Q ss_pred CCCCccceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638 228 PGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN 260 (273)
Q Consensus 228 ~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~ 260 (273)
..|.+|+.|.|+|.|+|..|.|++|....+.|.
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc 684 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTC 684 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeec
Confidence 468899999999999999999999999998886
No 179
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=93.11 E-value=0.2 Score=32.91 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.9
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 16 MISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
....|.|.+++++|.|.|.|.+..
T Consensus 75 ~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 75 STSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CEEEEEEEECCHHHCEEEEEEEec
Confidence 678999999999999999999864
No 180
>KOG0613|consensus
Probab=92.75 E-value=1.5 Score=40.56 Aligned_cols=214 Identities=17% Similarity=0.174 Sum_probs=103.1
Q ss_pred EEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC-CCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCC
Q psy6638 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP-EAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSE 97 (273)
Q Consensus 20 l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P-~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~ 97 (273)
.-+.+...++.+.+...-.+.++ ......+.....| .+|.+-.........+...|..+. ++......|.++.+..+
T Consensus 104 ~~v~~~~ad~~~~~~~e~~~~i~-~~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g 182 (1205)
T KOG0613|consen 104 WAVGDEYADDRPIHLVERKALID-VVPSPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAG 182 (1205)
T ss_pred cccccccccccccccccccccCC-ccccchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEecc
Confidence 33344444445444444444444 2222222223334 455554455566777888898775 45556778899888765
Q ss_pred C-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEE
Q psy6638 98 E-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI 176 (273)
Q Consensus 98 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l 176 (273)
. .|....... .. .+ .+.... |.++++++-..|+...-...........|...|..-.... ....-+.+
T Consensus 183 ~s~~~~~l~~~-~~---~s-~~~~a~----~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e--~s~~~i~~ 251 (1205)
T KOG0613|consen 183 RSPWLKRLTQP-TD---DS-TDTDAH----YESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSVTLE--ASDRKIQL 251 (1205)
T ss_pred CCCcccccccc-cC---Cc-ceeccc----cceeEEEEEecCCCccchhhhhcccccCCCCccccccccc--hhheeeeE
Confidence 4 444222111 10 11 111122 4555555444443322221111111122333332211222 24456778
Q ss_pred EEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638 177 KWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS 252 (273)
Q Consensus 177 ~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s 252 (273)
.|..+.+.. .-.+.+|.+......+.. .+......+....+++...-..+..|.+++...-..|.+.+-
T Consensus 252 ~l~~~~G~~-~~~~~~~l~e~~~~~~~~------t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~ 320 (1205)
T KOG0613|consen 252 TLRAPRGPY-SAHILGYLIEQRKHKGGN------TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPG 320 (1205)
T ss_pred EeecCCCch-HHHHhcchhhhcccCCCc------cccccccCCccccceeeecccCCcccceeeeEEeeccccccC
Confidence 888877632 234556665554421110 222333334445566666666778888888888776765443
No 181
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=92.30 E-value=0.21 Score=31.56 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=23.5
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
.+..+.|.|.+++.+|.|.|.|.+...
T Consensus 60 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 60 DNGVFTVTLNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred CCCEEEEEEcCCCHHHCEEEEEEcccC
Confidence 356789999999999999999988764
No 182
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=92.27 E-value=0.27 Score=32.28 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=26.6
Q ss_pred ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
+||.+... ..+..+.|.|.+++.+|.|.|.|.+..
T Consensus 59 ~R~~~~~~--~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 59 GRYSVNFQ--KAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CeEEEEEe--ccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 56655321 234567899999999999999999885
No 183
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=91.97 E-value=0.3 Score=31.53 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=23.1
Q ss_pred ecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638 12 LEDGMISELGIANVLRQDSGTLSCLAT 38 (273)
Q Consensus 12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~ 38 (273)
...+..+.|.|.+++++|.|.|.|...
T Consensus 66 ~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 66 TSDSSRYRLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred ECCCCEEEEEECCCCHHHCEEEEEeEc
Confidence 345567889999999999999999975
No 184
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=91.94 E-value=0.21 Score=32.09 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
+.....|.|.+++.+|.|.|.|.+.+
T Consensus 65 ~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 65 SSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred cCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 45778899999999999999998753
No 185
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=91.87 E-value=0.39 Score=31.74 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=23.0
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
....+.|.|.+++.+|+|.|.|.....
T Consensus 76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 76 GKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 445678999999999999999987653
No 186
>PHA02633 hypothetical protein; Provisional
Probab=91.30 E-value=0.98 Score=25.60 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=31.4
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecC
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET 55 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~ 55 (273)
....|-|-+...+|+|.|.|+.+|..-....++.+.+...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 4457999999999999999999987666666776666433
No 187
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=90.74 E-value=0.58 Score=26.96 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638 224 ELRIPGLTPYTKYAIVVRGYNSVGKGP 250 (273)
Q Consensus 224 ~~~i~~L~p~~~Y~~~v~a~n~~g~~~ 250 (273)
.+.+.+|.|| .|.|.|+|.+..|...
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNGKWS 55 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred EEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence 8888899888 8999999999877643
No 188
>PLN02533 probable purple acid phosphatase
Probab=90.61 E-value=8.5 Score=32.03 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=49.1
Q ss_pred CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCcc--ceEE-------ecCCccEEEecCCCCCC
Q psy6638 55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP--LKII-------VPGSQTSATLQPLLPAT 125 (273)
Q Consensus 55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~l~~~~ 125 (273)
.+..|..+.+.-...+++.++|...... .+. |+|-...+...... .... .++......|.+|+|++
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~-~~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T 114 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSI-PPS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNT 114 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCC-CCE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCC
Confidence 4557777777766788999999976432 122 33433221110000 0000 11223457899999999
Q ss_pred eEEEEEEEeCCCCCCCCCcceEEEecC
Q psy6638 126 QYQVRLLAENPLGMSETGAELQASTLE 152 (273)
Q Consensus 126 ~y~~~v~a~~~~g~~~~s~~~~~~~~~ 152 (273)
.|.|+|-. ...+....|++.+
T Consensus 115 ~Y~Yrvg~------~~~s~~~~F~T~p 135 (427)
T PLN02533 115 VYYYKCGG------PSSTQEFSFRTPP 135 (427)
T ss_pred EEEEEECC------CCCccceEEECCC
Confidence 99999831 1224556777743
No 189
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=90.25 E-value=2.3 Score=30.34 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=29.4
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEc-CCC-CceeEEEEEEec
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATN-YHG-TAEMTIQLLVQE 54 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n-~~g-~~~~~~~~~~~~ 54 (273)
.-..+.+.|.++..+|.|.|.|.... ..| .......+.+..
T Consensus 81 s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 81 SFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred CCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 33557899999999999999999764 345 444455555543
No 190
>KOG4806|consensus
Probab=89.89 E-value=7.7 Score=30.68 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=65.4
Q ss_pred eeeeeCCCEEEEEEEEcCCCCcee-----EEEEEEecCCCCCcceEEEEe--eccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638 23 ANVLRQDSGTLSCLATNYHGTAEM-----TIQLLVQETPEAPKNIRITEE--SSRSLQISWTAPYSGNTAITQYIIQYKS 95 (273)
Q Consensus 23 ~~~~~~~~~~y~~~a~n~~g~~~~-----~~~~~~~~~P~~p~~~~~~~~--~~~~~~l~W~~~~~~~~~~~~y~v~~~~ 95 (273)
..+.+...|.++....|..-.... +...+....|..|++-.+..+ .-++.++.|....+. -..|-|+.+.
T Consensus 289 fvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~---~~kyCIy~~~ 365 (454)
T KOG4806|consen 289 FVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE---ELKYCIYVFN 365 (454)
T ss_pred EEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch---heeEEEEEec
Confidence 345667788888887775433211 222233466888887666554 456789999864321 3456665543
Q ss_pred CCC--C------------------------CCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 96 SEE--M------------------------WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 96 ~~~--~------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+ . |.........+.+...-+|.+|.|+..|.+-|.|.-..|..
T Consensus 366 ~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~ 436 (454)
T KOG4806|consen 366 LPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKP 436 (454)
T ss_pred ccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcc
Confidence 211 0 00000001111122334678999999999999998766644
No 191
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=89.44 E-value=3 Score=37.68 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=53.3
Q ss_pred CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCC---Cccc-eeeeeeeE-EecCCcccE--EEc
Q psy6638 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS---SLAL-SSYTLKSV-ELDNQYEGE--LRI 227 (273)
Q Consensus 155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~---~~~~-~~~~~~~~-~~~~~~~~~--~~i 227 (273)
||....++++.. ....+.|+|..|.++--.|...+|.|.|...-.. +... ...+-... ....+.... +..
T Consensus 755 PP~rItDL~~~~---~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~ 831 (863)
T TIGR00868 755 PPSKITDLEAGF---QGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKP 831 (863)
T ss_pred CCccceeeEEee---cCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeC
Confidence 444455666533 4556999999998865567888999998654110 0000 00000000 001111222 333
Q ss_pred CCC--CccceEEEEEEEecCCCc-CCCCc
Q psy6638 228 PGL--TPYTKYAIVVRGYNSVGK-GPFSE 253 (273)
Q Consensus 228 ~~L--~p~~~Y~~~v~a~n~~g~-~~~s~ 253 (273)
.+. +.++.|.|-|+|++..|. |+.|.
T Consensus 832 ~~~~~~~~~~~~~ai~a~d~~~~~s~~sn 860 (863)
T TIGR00868 832 EGIPIENGTDLFIAVQAIDKANLTSEVSN 860 (863)
T ss_pred CcccccCCeEEEEEEEEEccccccccccc
Confidence 332 357789999999998775 65554
No 192
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=89.03 E-value=2 Score=26.06 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=24.2
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCce
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAE 45 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~ 45 (273)
.+.|.|.-...+|.+.|+|.|.|..+...
T Consensus 42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~ 70 (80)
T cd05885 42 SNTIRFPVDRKDDGAILSCEASHPALVSQ 70 (80)
T ss_pred EEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence 34688888888999999999999887653
No 193
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=88.80 E-value=2.3 Score=24.39 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.1
Q ss_pred EEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 115 SATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 115 ~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
.+...+|.||. |.|.|+|.+..|.
T Consensus 30 ~~~~~~L~~G~-Y~l~V~a~~~~~~ 53 (66)
T PF07495_consen 30 SISYTNLPPGK-YTLEVRAKDNNGK 53 (66)
T ss_dssp EEEEES--SEE-EEEEEEEEETTS-
T ss_pred EEEEEeCCCEE-EEEEEEEECCCCC
Confidence 78888898885 9999999987763
No 194
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=87.90 E-value=2 Score=25.97 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=21.2
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTA 44 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~ 44 (273)
.+.|.|.....++.+.|+|.|.|.....
T Consensus 45 ~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 45 VSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred EEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 3567787777778889999999865443
No 195
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=87.47 E-value=5.4 Score=25.25 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=50.8
Q ss_pred CeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc----cc
Q psy6638 159 PREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP----YT 234 (273)
Q Consensus 159 p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p----~~ 234 (273)
|.++...- .+...+..+|.+..... .-..|.++|+......... . .......+......+..... ..
T Consensus 2 ~~nlsC~~--~~~~~m~CtW~~g~~~~---~~t~y~L~~~~~~~~~~~e-C---~~y~~~~~~~~gC~~~~~~~~~~~~~ 72 (99)
T PF09240_consen 2 PQNLSCFI--YNLEYMNCTWEPGKEAP---PDTQYTLYYWYSPLEEEKE-C---PHYSKDSGTRIGCQFPVSEIDSSEFS 72 (99)
T ss_dssp -EEEEEEE--ETTTEEEEEEECCTTCS---TTEEEEEEEEETTSSSEEE-E---SEEEESTSSEEEEEEESCTT-TTTTS
T ss_pred CeeCEEEE--ECCEEEEEEECCCCCCC---CcccEEEEEEcCCCCcccc-C---CCccccCCceeEEEecCCCccccccc
Confidence 45777666 67889999999876522 3468999999876432111 1 11111222234555555444 34
Q ss_pred eEEEEEEEecCCCcCC
Q psy6638 235 KYAIVVRGYNSVGKGP 250 (273)
Q Consensus 235 ~Y~~~v~a~n~~g~~~ 250 (273)
.|.|.|.+.+..|.-.
T Consensus 73 ~~~v~V~~ss~~~~i~ 88 (99)
T PF09240_consen 73 QYNVCVNGSSSAGSIR 88 (99)
T ss_dssp EEEEEEEEEETTEEEE
T ss_pred eEEEEEEeccCCCccC
Confidence 7999999998877653
No 196
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=86.38 E-value=2.4 Score=27.09 Aligned_cols=28 Identities=32% Similarity=0.215 Sum_probs=23.7
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEM 46 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~ 46 (273)
.|.|+..++.|.|.|.+...+..|....
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 7999999999999999999999888754
No 197
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=86.13 E-value=5.3 Score=23.77 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.1
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
...+.|.++.+.....|.+.|.|..|.
T Consensus 37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 63 (77)
T cd05760 37 ERTLTLRSAGPDDSGLYYCCAHNAFGS 63 (77)
T ss_pred CCEEEEeeCCcccCEEEEEEEEeCCCe
Confidence 346788889999999999999998884
No 198
>KOG3515|consensus
Probab=85.57 E-value=8.3 Score=34.19 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=55.2
Q ss_pred ecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEE
Q psy6638 118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197 (273)
Q Consensus 118 ~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~ 197 (273)
+-+..++..|.+.|.+.|..|...-+..+.--+ -+..|.++++.. .....+.|.|.+..+ +|....|.+.|
T Consensus 658 ~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t----~~~~~~n~~~~~--~~~~~i~l~~~p~fd---gg~~q~f~~~~ 728 (741)
T KOG3515|consen 658 ILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGT----ASVGPINLTYDN--LTYSTISLEWMPGFD---GGLQQRFFLKY 728 (741)
T ss_pred ccCCcchhhhcceeeecccCCCccccceecCCc----CCCCccceEeee--eeeeeeceeeeeccc---cccccceeeeh
Confidence 344567778888888888888554444333222 234677999888 889999999999987 66777888888
Q ss_pred EEcCC
Q psy6638 198 QISSG 202 (273)
Q Consensus 198 ~~~~~ 202 (273)
...+.
T Consensus 729 ~~~~~ 733 (741)
T KOG3515|consen 729 YDLGT 733 (741)
T ss_pred hhcCC
Confidence 77654
No 199
>KOG1948|consensus
Probab=85.38 E-value=28 Score=31.53 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.0
Q ss_pred ccEEEecCCCCCCeEEEEEEEeC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAEN 135 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~ 135 (273)
.-.++|.+|.|++.|.+++.+.-
T Consensus 945 nG~yRiRGL~Pdc~Y~V~vk~~~ 967 (1165)
T KOG1948|consen 945 NGTYRIRGLLPDCEYQVHVKSYA 967 (1165)
T ss_pred CCcEEEeccCCCceEEEEEeecc
Confidence 45699999999999999998874
No 200
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=85.25 E-value=4.6 Score=22.27 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=23.5
Q ss_pred EEEcCCCCccceEEEEEEEecCCCcCCCCccEEEE
Q psy6638 224 ELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIAR 258 (273)
Q Consensus 224 ~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~ 258 (273)
++++..+ ....|.+.+.|.+.+|.........|.
T Consensus 15 s~t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~t 48 (54)
T PF13754_consen 15 SFTVPAL-ADGTYTITVTATDAAGNTSTSSSVTFT 48 (54)
T ss_pred EEeCCCC-CCccEEEEEEEEeCCCCCCCccceeEE
Confidence 4455555 677999999999999985444333333
No 201
>KOG3515|consensus
Probab=84.94 E-value=1.4 Score=38.74 Aligned_cols=76 Identities=13% Similarity=0.296 Sum_probs=58.0
Q ss_pred EEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC
Q psy6638 21 GIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE 97 (273)
Q Consensus 21 ~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~ 97 (273)
-|-+.-....|...|.+.|..|+......+.-...|..|.++.+.......+.|.|.+..++.. ...|.+.+...+
T Consensus 657 ~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t~~~~~~n~~~~~~~~~~i~l~~~p~fdgg~-~q~f~~~~~~~~ 732 (741)
T KOG3515|consen 657 WILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGTASVGPINLTYDNLTYSTISLEWMPGFDGGL-QQRFFLKYYDLG 732 (741)
T ss_pred cccCCcchhhhcceeeecccCCCccccceecCCcCCCCccceEeeeeeeeeeceeeeecccccc-ccceeeehhhcC
Confidence 3344445566679999999999998877777788899999999999999999999998765443 345666665543
No 202
>PHA02982 hypothetical protein; Provisional
Probab=84.92 E-value=1.8 Score=31.35 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=47.4
Q ss_pred EEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCcc
Q psy6638 6 TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTA 85 (273)
Q Consensus 6 ~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~ 85 (273)
....++..++..++|.|+...+.+.|-|+|.+....+....--. ...+....+.+.|... .....
T Consensus 88 kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~k--------------Cl~V~~~~V~~~W~e~-nNeT~ 152 (251)
T PHA02982 88 KDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEK--------------CLEIQKEDILYVVEEH-NNETI 152 (251)
T ss_pred ceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchheehe--------------eeeEecceEEEEEEec-CCeEE
Confidence 34455566888999999999999999999999976654433110 1122345678888742 22223
Q ss_pred ceEEEEEEEe
Q psy6638 86 ITQYIIQYKS 95 (273)
Q Consensus 86 ~~~y~v~~~~ 95 (273)
+..|...+..
T Consensus 153 V~CyVgS~~~ 162 (251)
T PHA02982 153 ITCFVGSKHG 162 (251)
T ss_pred EEEEEEeccC
Confidence 4445554443
No 203
>KOG1378|consensus
Probab=84.72 E-value=14 Score=30.66 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=28.5
Q ss_pred ccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638 222 EGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261 (273)
Q Consensus 222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~ 261 (273)
....++.+|++++.|.++|-.- ..||....|+|++
T Consensus 108 ih~~~~~~L~~~t~YyY~~Gs~-----~~wS~~f~F~t~p 142 (452)
T KOG1378|consen 108 IHDAVMKNLEPNTRYYYQVGSD-----LKWSEIFSFKTPP 142 (452)
T ss_pred EeeeeecCCCCCceEEEEeCCC-----CCcccceEeECCC
Confidence 4567899999999999988544 2289999999988
No 204
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=84.38 E-value=2.3 Score=23.78 Aligned_cols=27 Identities=44% Similarity=0.573 Sum_probs=23.1
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYH 41 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~ 41 (273)
...+.|.|.++...|.|.|.|.+.+..
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCc
Confidence 346689999999999999999998765
No 205
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=84.24 E-value=4.9 Score=33.71 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=20.7
Q ss_pred ccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638 222 EGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262 (273)
Q Consensus 222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~ 262 (273)
...+.+.+|+|++.|.+++..... +..+..-.|+|.+.
T Consensus 63 t~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~p~ 100 (453)
T PF09423_consen 63 TVKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTAPD 100 (453)
T ss_dssp EEEEEE-S--TT-EEEEEEEE--T---TEE---EEEE--TT
T ss_pred EeecccCCCCCCceEEEEEEEecC---CCCCCceEEEcCCC
Confidence 356889999999999999999322 34455678888854
No 206
>KOG1225|consensus
Probab=83.44 E-value=6.7 Score=33.25 Aligned_cols=114 Identities=19% Similarity=0.154 Sum_probs=68.9
Q ss_pred EEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCc
Q psy6638 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESW 186 (273)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~ 186 (273)
...+.....+.+..|.++..|..+++++...-.+.+.. ....+... -+..+.+.. ....++.+.|..|...
T Consensus 411 ~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~~~~~~~~----~~g~~~v~~--~~~~s~e~~g~~~s~~-- 481 (525)
T KOG1225|consen 411 GRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKD-KSETTVLC----WNGGLCVDG--ETESSLEVGGPCPSSG-- 481 (525)
T ss_pred eeeccceeeeeeeeecCCcceeeehhhhhhhhccCCcc-cccceEee----cCCceeeee--eeeccccccCCCCCcc--
Confidence 34555667788899999999999998875432222111 11111111 233455555 6788999999998763
Q ss_pred cceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638 187 NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV 240 (273)
Q Consensus 187 ~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v 240 (273)
...+.+.+.....+ .. ....... ....+...+|.|++.|.+.+
T Consensus 482 ---~~~~~~~~~~~~~~-~~------~~~~~~~-~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 482 ---TCGWEVRCGPCGND-GG------VNAEPPP-ECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred ---ccceEEEeeecCcc-cc------cccCCCC-CCCCCCccCcccccceeccc
Confidence 34677777332221 10 1111122 45788899999999998765
No 207
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=83.42 E-value=1.9 Score=27.07 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.0
Q ss_pred CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 14 DGMISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 14 ~~~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
.+....|.|..++++|.|.|+|....
T Consensus 51 ~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 51 GGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CeEEEEEEecCCCcccCEEEEEEEEC
Confidence 34567899999999999999999753
No 208
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=83.41 E-value=8.2 Score=23.72 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=26.2
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQA 148 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~ 148 (273)
..+.|.++.......|.+.|.|..|.......+.+
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V 81 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTV 81 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEE
Confidence 46788888888889999999999986543333333
No 209
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=82.99 E-value=3.7 Score=24.40 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=22.9
Q ss_pred EEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 115 SATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 115 ~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
.+.|.++.+.....|.+.|.|..|..
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~ 67 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEAGIV 67 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCCCEE
Confidence 57889999999999999999998844
No 210
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=82.96 E-value=38 Score=31.08 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=26.4
Q ss_pred CCCcceEEEEeeccEEEEEEeCCCC--CCccceEEEEEEEeC
Q psy6638 57 EAPKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSS 96 (273)
Q Consensus 57 ~~p~~~~~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~ 96 (273)
....++++. .....+.|+|++|-+ +.+....|.|.+...
T Consensus 757 ~rItDL~~~-~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~ 797 (863)
T TIGR00868 757 SKITDLEAG-FQGDNIILTWTAPGDVLDHGRADRYIIRISTS 797 (863)
T ss_pred ccceeeEEe-ecCCEEEEEeeCCCccCCCCccceEEEEecCC
Confidence 333455443 345569999999864 556778999988653
No 211
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=82.82 E-value=18 Score=32.54 Aligned_cols=121 Identities=9% Similarity=0.045 Sum_probs=60.8
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcCCCCcee---EEEEEEecCCCCCc-ceEEEEe-eccEEEEEEeCCCCCCccceEEEE
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNYHGTAEM---TIQLLVQETPEAPK-NIRITEE-SSRSLQISWTAPYSGNTAITQYII 91 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~---~~~~~~~~~P~~p~-~~~~~~~-~~~~~~l~W~~~~~~~~~~~~y~v 91 (273)
...+.+.++-+ ..|..+++|.|..|-... +....+.++-.||. .+..... -...+.+.|-.|. ....+..-++
T Consensus 659 ~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it~~~~l~v~dPt-~~~d~~~sei 736 (952)
T COG4733 659 AAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIITLVIRLVVGDPT-GAVDITSTEI 736 (952)
T ss_pred ccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEEeeeeEEEecCC-cceEEeeeee
Confidence 44688888887 578888888888776543 33444444333222 2222111 1234567776653 2112222222
Q ss_pred EEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCC
Q psy6638 92 QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141 (273)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~ 141 (273)
++....+. ...... .-........-.+|.++..|.|++++++..|...
T Consensus 737 ~~s~~~d~-~~~Ar~-LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~ 784 (952)
T COG4733 737 RSAVIADG-NFQARS-LGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNND 784 (952)
T ss_pred eeeccccc-hhHHhh-hhccccccccccCcCCCceEEEEeeecccccccc
Confidence 22221110 000000 0000111111157999999999999999888543
No 212
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=81.58 E-value=10 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=24.3
Q ss_pred CccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 112 SQTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
....+.|.++.......|.|.|.|..|..
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 84 (95)
T cd05730 56 DGSEMTILDVDKLDEAEYTCIAENKAGEQ 84 (95)
T ss_pred CCCEEEECCCChhhCEEEEEEEEcCCCeE
Confidence 34568889999999999999999998854
No 213
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=81.14 E-value=2.8 Score=27.52 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=21.4
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
...+.|.|.+++++|.|.|.|.+..
T Consensus 73 ~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 73 KSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEEc
Confidence 3456899999999999999998764
No 214
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=80.61 E-value=6 Score=23.52 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=23.4
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+.|.++.......|.+.|.|..|..
T Consensus 41 ~~L~I~~~~~~D~G~Y~C~A~N~~G~~ 67 (75)
T cd05892 41 VTLLIKNVNKKDAGWYTVSAVNEAGVA 67 (75)
T ss_pred EEEEECCCChhhCEEEEEEEEcCcCeE
Confidence 368889999999999999999998843
No 215
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=80.45 E-value=81 Score=33.16 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=19.3
Q ss_pred ceEEEEEEEecCCCcCCCCccEEEEc
Q psy6638 234 TKYAIVVRGYNSVGKGPFSEPFIART 259 (273)
Q Consensus 234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t 259 (273)
..|.+++.|.|..+.-..+..+.++.
T Consensus 1840 G~ytV~L~AsN~vs~~~~s~~~~VQe 1865 (2740)
T TIGR00864 1840 GTFAIRLNASNAVSGKSASREFFAEE 1865 (2740)
T ss_pred eEEEEEEEEEcccCcceeeeeEEEEE
Confidence 38999999999987665665555553
No 216
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=79.16 E-value=10 Score=22.12 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=24.0
Q ss_pred CccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 112 SQTSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
....+.|.++.+.....|.|.|.|..|.
T Consensus 38 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 65 (74)
T cd05748 38 SSTSLVIKNAERSDSGKYTLTLKNPAGE 65 (74)
T ss_pred CeEEEEECCCCcCcCEEEEEEEECCCcc
Confidence 3467888999999999999999998874
No 217
>KOG0613|consensus
Probab=79.05 E-value=18 Score=34.04 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=74.8
Q ss_pred EEEecCCCCCCeEEEEEEEeCCCCCCCCCcce---EEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceee
Q psy6638 115 SATLQPLLPATQYQVRLLAENPLGMSETGAEL---QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLL 191 (273)
Q Consensus 115 ~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~---~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~ 191 (273)
+.+...-.++..+.+++...-..|.+.+.... .+......+..-+....+.. .....+.+.|....... .....
T Consensus 292 s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a--~d~~~v~m~~~~~~~~~-p~~~~ 368 (1205)
T KOG0613|consen 292 SWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTA--RDNTLVEMPTALSGTQK-PDEAQ 368 (1205)
T ss_pred ceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceecc--ccCcceeecccccCCcC-Cchhe
Confidence 34444456777888888887666665554433 23333334444444555555 66778888888765432 22234
Q ss_pred eEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCc
Q psy6638 192 GYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253 (273)
Q Consensus 192 ~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~ 253 (273)
+|+..-....+..+ ............+.+.++.++..|..++.|.|..|.....+
T Consensus 369 ~~~~~~~~~~~~~~-------~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~ 423 (1205)
T KOG0613|consen 369 GYHGEEVSSESLGA-------LPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIA 423 (1205)
T ss_pred eecccccccccccc-------cccccccccCcchhhhhcCcccccccccceeccCCcccccc
Confidence 45544333222211 11111222245778889999999999999999988665443
No 218
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=78.58 E-value=7.9 Score=23.93 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638 17 ISELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
.-+|.+.++...|.|.++|.....
T Consensus 50 ~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 50 KKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred ccEEEeceeCcccCCEEEEEEEEC
Confidence 347899999999999999998754
No 219
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=77.05 E-value=3.9 Score=34.09 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred CCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcccccc
Q psy6638 229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCA 270 (273)
Q Consensus 229 ~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~~~~~ 270 (273)
.|++|..|.|++.+.+..+....+ .+.+.+ ..+|..=.|.
T Consensus 268 ~l~~g~~Y~~~l~v~~~~~~~~~a-~~~~~~-n~pP~~g~c~ 307 (440)
T PF02010_consen 268 VLEPGSTYTFRLTVTDSSGSSGSA-SISFTV-NAPPSGGSCS 307 (440)
T ss_dssp ------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccc-cccccccccc
Confidence 589999999999999886654322 344544 4444433343
No 220
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=76.96 E-value=11 Score=22.03 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=23.7
Q ss_pred CccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 112 SQTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
....+.|.++.......|.+.|.|..|..
T Consensus 39 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 67 (76)
T cd04978 39 DGGTLILSNVQPNDTAVYQCNASNVHGYL 67 (76)
T ss_pred cCCEEEECCCChhhCEEEEEEEEccCCeE
Confidence 34578888899888899999999988743
No 221
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=75.80 E-value=11 Score=22.17 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=23.1
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
...+.|.++.+.....|.+.|.|..|.
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 66 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGN 66 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCe
Confidence 346788999999999999999998874
No 222
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=74.89 E-value=8.8 Score=22.72 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=22.5
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+.+.++.+.....|++.|.|..|..
T Consensus 41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~ 67 (76)
T cd05868 41 DTIIFSKVQERSSAVYQCNASNEYGYL 67 (76)
T ss_pred CEEEECCCCHhhCEEEEEEEEcCCCEE
Confidence 356778889999999999999998854
No 223
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=74.50 E-value=13 Score=21.91 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=22.8
Q ss_pred EEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 115 SATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 115 ~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
.+.|.++.......|.+.|.|..|..
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~ 67 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEAGVV 67 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCCCcE
Confidence 58889999999999999999998843
No 224
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=73.85 E-value=25 Score=31.26 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=53.4
Q ss_pred CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcc---ceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA---LSSYTLKSVELDNQYEGELRIPGLTPYT 234 (273)
Q Consensus 158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~L~p~~ 234 (273)
+...+++.. .+.+.+.|.|+.... ...|.|++......+.. .....|.+..... ....--..++|.+
T Consensus 7 ~vtslrI~k--LsaN~v~l~WddVG~------NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~--~~~wFed~~~p~t 76 (1030)
T PHA02579 7 SVTSLRIDK--LSANQVYLTWDDVGA------NFYYFVELAETRDADGELIPDDELRWINLGYTA--NNEWFEDKLQPNT 76 (1030)
T ss_pred cccEEEhhh--hccceEEEEeeccCC------ceEEEEEEEeeccCCCccCCCccccceecCccc--chhhhhhccCCcc
Confidence 344677777 899999999998644 46888998865332211 1122233322211 1223233499999
Q ss_pred eEEEEEEEecC-CCcCCCCccEEEEc
Q psy6638 235 KYAIVVRGYNS-VGKGPFSEPFIART 259 (273)
Q Consensus 235 ~Y~~~v~a~n~-~g~~~~s~~~~~~t 259 (273)
.|.+||+..-. ...|.|...-.|.|
T Consensus 77 ~Yk~Rv~~~~qGFe~SdWv~teef~T 102 (1030)
T PHA02579 77 YYKFRVAVAAQGFEQSDWVYTEEFET 102 (1030)
T ss_pred eEEEEEEeeccCCCccccEEeeceEe
Confidence 99999987642 22244443333444
No 225
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=70.25 E-value=15 Score=23.40 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=23.2
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+.|..+.+.....|+|.|.|..|..
T Consensus 65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 65 SELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEEEEeecCHhhCeeEEEEEECCCccE
Confidence 567888899999999999999998843
No 226
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=69.20 E-value=3.8 Score=24.17 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=13.1
Q ss_pred CCCccceEEEEEEEe
Q psy6638 229 GLTPYTKYAIVVRGY 243 (273)
Q Consensus 229 ~L~p~~~Y~~~v~a~ 243 (273)
.|+||..|.|.|+|.
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 588999999999974
No 227
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.94 E-value=1.6e+02 Score=31.22 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQA 148 (273)
Q Consensus 116 ~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~ 148 (273)
..+.-.++| .|.++|.|.|..|....+..+.+
T Consensus 1662 ~~vt~~~pG-~Y~VtL~aSN~vG~~t~s~~i~v 1693 (2740)
T TIGR00864 1662 AKLNPLEAG-PCDIFLQAANLLGQATADCTIDF 1693 (2740)
T ss_pred eEEecCCCc-eEEEEEEEeecccceeeEEEEEE
Confidence 344445665 59999999999987654443333
No 228
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=68.40 E-value=24 Score=21.54 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=23.8
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
...+.|.++.+.....|.|.|.|..|.
T Consensus 51 ~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 51 LSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred eEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 457889999999999999999999884
No 229
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=66.57 E-value=27 Score=21.35 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=23.9
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
...+.|.++.+.....|.|.|.|..|..
T Consensus 52 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 79 (88)
T cd05851 52 GAVLKIFNIQPEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCEEEECcCChhhCEEEEEEEEcCCCce
Confidence 3468889999999999999999998854
No 230
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=66.21 E-value=30 Score=21.64 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=24.1
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
...+.|.++.+.....|.|.|.|..|..
T Consensus 63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 90 (98)
T cd05870 63 ESSLHIKDVKLSDSGRYDCEAASRIGGH 90 (98)
T ss_pred eeEEEEeeCCcCCCEEEEEEEeccCCcc
Confidence 3568899999999999999999998854
No 231
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=64.24 E-value=31 Score=21.12 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=23.4
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
...+.|.++.+.....|.+.|.|..|..
T Consensus 55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 55 IYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred EEEEEEecCCcccCEEEEEEEECCCCce
Confidence 4567888999988899999999998853
No 232
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=62.72 E-value=16 Score=21.77 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.5
Q ss_pred ccEEEcCCCCccceEEEEEEEec-CCC
Q psy6638 222 EGELRIPGLTPYTKYAIVVRGYN-SVG 247 (273)
Q Consensus 222 ~~~~~i~~L~p~~~Y~~~v~a~n-~~g 247 (273)
.++|.-.+|++|..|.|+|.+.- ..|
T Consensus 28 ~R~F~T~~L~~G~~y~Y~v~a~~~~dG 54 (75)
T TIGR03000 28 VRTFTTPPLEAGKEYEYTVTAEYDRDG 54 (75)
T ss_pred EEEEECCCCCCCCEEEEEEEEEEecCC
Confidence 46788899999999999999964 445
No 233
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=62.08 E-value=37 Score=21.33 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=27.9
Q ss_pred CccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA 148 (273)
Q Consensus 112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~ 148 (273)
....+.|.+........|.|.|.|..|....+..+.+
T Consensus 54 ~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V 90 (98)
T cd05762 54 NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90 (98)
T ss_pred CeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEE
Confidence 3467888999999999999999999986544333333
No 234
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=61.96 E-value=18 Score=23.73 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=21.5
Q ss_pred cCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638 13 EDGMISELGIANVLRQDSGTLSCLAT 38 (273)
Q Consensus 13 ~~~~~~~l~i~~~~~~~~~~y~~~a~ 38 (273)
....+-.|.|.+|+.+|.+.|.|...
T Consensus 69 ~s~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 69 LGNEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCCCEEEEEEcCCCHHHCeEEEEEee
Confidence 34556789999999999999999753
No 235
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=61.70 E-value=28 Score=19.86 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=22.5
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
..+.|.++.+.....|.+.|.|..|.
T Consensus 35 ~~L~I~~v~~~D~G~Y~C~a~N~~G~ 60 (69)
T cd05725 35 KSLKIRNVTAGDEGSYTCEAENMVGK 60 (69)
T ss_pred CEEEECcCChhHCEEEEEEEEcCCCc
Confidence 46888999999999999999998874
No 236
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=61.42 E-value=14 Score=22.52 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=25.1
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMSETGA 144 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~ 144 (273)
..+.|.++.......|.+.|.|..|....+.
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 4688899999999999999999988544333
No 237
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=59.87 E-value=39 Score=20.88 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=24.4
Q ss_pred CccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 112 SQTSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
....+.|.++.......|+|.|.|..|.
T Consensus 53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 80 (91)
T cd05740 53 DNRTLTFNNVTRSDTGHYQCEASNEVSN 80 (91)
T ss_pred CCCEEEECcCChhhCEEEEEEEEcCCCC
Confidence 4457899999999999999999999884
No 238
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=59.14 E-value=53 Score=22.27 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=18.7
Q ss_pred CCccceEEEEEEEecCCCcCCCCccEEEE
Q psy6638 230 LTPYTKYAIVVRGYNSVGKGPFSEPFIAR 258 (273)
Q Consensus 230 L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~ 258 (273)
...+..|.++|..+|..|.+. |.++.+.
T Consensus 79 ~~~gG~y~~~VeLCN~~GCS~-S~~~~V~ 106 (133)
T PF08329_consen 79 VTKGGRYQMQVELCNADGCST-SAPVEVV 106 (133)
T ss_dssp E-S-EEEEEEEEEEETTEEEE----EEEE
T ss_pred ecCCCEEEEEEEEECCCCccc-CCCEEEE
Confidence 456779999999999999764 4455554
No 239
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=57.82 E-value=36 Score=19.82 Aligned_cols=26 Identities=12% Similarity=-0.066 Sum_probs=22.3
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
..+.|.++.+.....|.+.|.|..|.
T Consensus 40 ~~L~I~~~~~~D~G~Y~C~A~N~~G~ 65 (75)
T cd05763 40 DVFFIVDVKIEDTGVYSCTAQNTAGS 65 (75)
T ss_pred CEEEEeeCCcccCEEEEEEEEcCCCE
Confidence 46788889999999999999998874
No 240
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=57.54 E-value=43 Score=20.62 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=40.5
Q ss_pred eccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC-CCCCCCCcce
Q psy6638 68 SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP-LGMSETGAEL 146 (273)
Q Consensus 68 ~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~-~g~~~~s~~~ 146 (273)
....++|.+.... +...|.+........+. ..........+.|..+.+.....|+|+..+. .+++..|.++
T Consensus 15 ~G~~VtL~C~~~~----~~~~f~l~k~g~~~~~~----~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~l 86 (91)
T cd05751 15 LGKPVTLRCQGPY----GAVEYRLYREGSTFAVK----KPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPL 86 (91)
T ss_pred CCCcEEEEEecCC----CCCEEEEEECCCCcccc----ccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcE
Confidence 4667888887542 23445443221111111 1112234456888889888888999988875 4455555544
Q ss_pred EE
Q psy6638 147 QA 148 (273)
Q Consensus 147 ~~ 148 (273)
.+
T Consensus 87 el 88 (91)
T cd05751 87 EL 88 (91)
T ss_pred EE
Confidence 33
No 241
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=57.02 E-value=41 Score=20.23 Aligned_cols=28 Identities=4% Similarity=-0.113 Sum_probs=23.3
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
...+.|.++.......|.+.|.|..|..
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 73 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVDSL 73 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCCcE
Confidence 4568899999999999999999987743
No 242
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=56.39 E-value=32 Score=21.85 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=23.0
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+.|..+.+.....|.+.|.|..|..
T Consensus 65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred cEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 567888899999999999999998743
No 243
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=55.31 E-value=41 Score=19.70 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=23.9
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMSE 141 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~~ 141 (273)
..+.|.++.......|.+.|.|..|...
T Consensus 39 g~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 66 (73)
T cd05852 39 GSLEILNITKLDEGSYTCFAENNRGKAN 66 (73)
T ss_pred CEEEECcCChhHCEEEEEEEECCCCcee
Confidence 4688899999999999999999988543
No 244
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=55.27 E-value=32 Score=21.10 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=24.8
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMSETGA 144 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~ 144 (273)
..+.|.++.+.....|.+.|.|..|....+.
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa 85 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSA 85 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCE
Confidence 4577888888899999999999998654443
No 245
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=54.66 E-value=25 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.2
Q ss_pred cEEEcCCCCccceEEEEEEEecC
Q psy6638 223 GELRIPGLTPYTKYAIVVRGYNS 245 (273)
Q Consensus 223 ~~~~i~~L~p~~~Y~~~v~a~n~ 245 (273)
..|.+.||.||+.|.|+-...+.
T Consensus 102 saYqVtNL~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 102 SAYQVTNLQPGTKYYISYLVTKG 124 (184)
T ss_pred eeEEeeccCCCcEEEEEEEEecC
Confidence 56889999999999988777653
No 246
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=54.53 E-value=48 Score=20.32 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=36.5
Q ss_pred CceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc-CCCCccceEEEEEEE
Q psy6638 171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI-PGLTPYTKYAIVVRG 242 (273)
Q Consensus 171 ~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~L~p~~~Y~~~v~a 242 (273)
...+.|.|+..... ...|.|............. ..+............+++ .+|.++..|.|++..
T Consensus 12 g~~~~I~W~~~~~~-----~~~~~I~L~~g~~~~~~~~-~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 12 GQPITITWTSDGTD-----PGNVTIYLCNGNNTNLNFV-QTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CCcEEEEEeCCCCC-----CcEEEEEEEcCCCCCccee-EEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 35799999997521 1467777776654221111 111111111112345566 459999999999883
No 247
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=54.41 E-value=42 Score=19.56 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.8
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
..+.|.++.......|.+.|.|..|.
T Consensus 38 g~L~i~~~~~~D~G~Y~C~a~N~~G~ 63 (74)
T cd05738 38 GALQIENSEESDQGKYECVATNSAGT 63 (74)
T ss_pred cEEEECCCChhhCEEEEEEEECCCCc
Confidence 35778888888889999999998874
No 248
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=53.76 E-value=28 Score=20.98 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=22.8
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+.|.++.......|.|.|.|..|..
T Consensus 46 ~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 46 GCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred EEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 357788888888999999999998853
No 249
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=52.26 E-value=22 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=25.1
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMSETG 143 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s 143 (273)
..+.|.++.......|++.|.|..|....+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 84 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHS 84 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccce
Confidence 468899999999999999999999865433
No 250
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=52.25 E-value=39 Score=20.34 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=22.7
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+.|.+..+.....|.|.|.|..|..
T Consensus 44 ~~L~i~~~~~~D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 44 GCLQLDNPTHLNNGIYTLVAKNEYGED 70 (79)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCccc
Confidence 357788888888999999999999854
No 251
>PF14292 SusE: SusE outer membrane protein
Probab=51.64 E-value=68 Score=21.18 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=24.0
Q ss_pred eccEEEEEEeCCCCCCc-cceEEEEEEEeCCCCCC
Q psy6638 68 SSRSLQISWTAPYSGNT-AITQYIIQYKSSEEMWP 101 (273)
Q Consensus 68 ~~~~~~l~W~~~~~~~~-~~~~y~v~~~~~~~~~~ 101 (273)
....+++.|+++..+.. ....|.++....+..+.
T Consensus 43 ~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~ 77 (122)
T PF14292_consen 43 SDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFS 77 (122)
T ss_pred CCceEEEEEECCccCCCCCceEEEEEEeccCCCcc
Confidence 45679999998865443 45589999887555444
No 252
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=51.57 E-value=22 Score=27.08 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.6
Q ss_pred EEecCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638 10 QVLEDGMISELGIANVLRQDSGTLSCLATNY 40 (273)
Q Consensus 10 ~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~ 40 (273)
.+...| .|.+.+....++|.|+|...-.
T Consensus 32 nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 32 NITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred EEccCc---eEEeeccccccCCceEEEEEEE
Confidence 344455 7999999999999999998753
No 253
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=49.44 E-value=53 Score=19.33 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=23.5
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
...+.|.++.......|.+.|.|..|..
T Consensus 41 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 41 YGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred EEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 3468888999998899999999998854
No 254
>COG3979 Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
Probab=49.04 E-value=52 Score=23.74 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=47.5
Q ss_pred eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638 161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV 240 (273)
Q Consensus 161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v 240 (273)
.+.... ....++.+.|....+ ...+..|.+.++.. . ... -.....+++.+|.+.+.|.+.+
T Consensus 10 ~~~~~~--~~~~s~~~~~~s~~~---~~~~~~~p~~~~~d-~----------~~~---~t~~~~~~~~g~~~et~y~~~~ 70 (181)
T COG3979 10 SLMLTN--VTTTSASLAASSSSD---NKASDTYPYVYAWD-P----------KTV---YTTGTVVTVEGLAPETEYWTLV 70 (181)
T ss_pred ceeecc--hhhhhhhhccccccc---cccccCCCcccccC-c----------cce---ecccceEEecCcceeeEEEEee
Confidence 444444 567788888888633 23344454111111 0 011 1113578889999999999999
Q ss_pred EEecCCCc-CCCCccEEEEcCC
Q psy6638 241 RGYNSVGK-GPFSEPFIARTNE 261 (273)
Q Consensus 241 ~a~n~~g~-~~~s~~~~~~t~~ 261 (273)
.+....|. +.++..+...+..
T Consensus 71 ~a~~t~g~~s~~~~~~~~~~~~ 92 (181)
T COG3979 71 EAPDTSGNWSAWSRLLTVSTSG 92 (181)
T ss_pred eccCCCCccccceeeeeeccCc
Confidence 99986554 5555444444443
No 255
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=48.00 E-value=26 Score=23.41 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=21.4
Q ss_pred cEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638 223 GELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN 260 (273)
Q Consensus 223 ~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~ 260 (273)
..+.+.+|.|+..|+++....+..|.- |.....|...
T Consensus 5 ~~I~v~GL~p~~~vtl~a~~~~~~g~~-w~S~A~f~Ad 41 (126)
T PF04775_consen 5 VDIRVSGLPPGQEVTLRARLTDDNGVQ-WQSYATFRAD 41 (126)
T ss_dssp -EEEEES--TT-EEEEEEEEE-TTS-E-EEEEEEEE--
T ss_pred eEEEEeCCCCCCEEEEEEEEEeCCCCE-EEEEEEEEcC
Confidence 467888999999999999999766632 4434555543
No 256
>PHA03283 envelope glycoprotein E; Provisional
Probab=47.65 E-value=57 Score=27.73 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=29.8
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~ 54 (273)
..+.|+|.+.++++.|.|+...++..+.....+.+.+..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 356899999999999999999998776333355555544
No 257
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=45.58 E-value=70 Score=19.61 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=23.2
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+.|.++.......|.|.|.|..|..
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 467889999999999999999998854
No 258
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=43.97 E-value=36 Score=20.90 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=15.7
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHG 42 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g 42 (273)
.|.|......+.+.|+|.+.+...
T Consensus 63 ~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 63 QLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EEEECHHHhCCCCCEEEEEEeCCC
Confidence 344444444488899999987543
No 259
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=43.86 E-value=41 Score=19.49 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=17.1
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 16 MISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
....+.+.+-. ++.|.|.|.+.+
T Consensus 33 ~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 33 SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred CCceEEeeccC-CCCceEEEEeCC
Confidence 34466666776 889999999864
No 260
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=40.43 E-value=70 Score=20.68 Aligned_cols=27 Identities=19% Similarity=0.042 Sum_probs=20.6
Q ss_pred CCccceEEEEEEEecCCCcCCCCccEEE
Q psy6638 230 LTPYTKYAIVVRGYNSVGKGPFSEPFIA 257 (273)
Q Consensus 230 L~p~~~Y~~~v~a~n~~g~~~~s~~~~~ 257 (273)
...+..|..+|.++|..|.+ .|.+..+
T Consensus 76 v~kgG~y~m~V~lCn~dGCS-~S~~~~I 102 (106)
T cd02848 76 VGKGGRYQMQVALCNGDGCS-TSAAKEI 102 (106)
T ss_pred eCCCCeEEEEEEEECCCCcc-CcCCEEE
Confidence 44577999999999999976 4555443
No 261
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=39.18 E-value=91 Score=19.07 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=23.0
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
...+.|.++.......|.|.|.|..|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05737 57 YASLTIKGVSSEDSGKYGIVVKNKYGG 83 (92)
T ss_pred EEEEEEccCChhhCEEEEEEEEECCCc
Confidence 346888999999999999999998884
No 262
>PHA03282 envelope glycoprotein E; Provisional
Probab=38.54 E-value=1.2e+02 Score=25.49 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.2
Q ss_pred EEEEeeeeeCCCEEEEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLAT 38 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~ 38 (273)
+|.|.+...+|.|.|++.+.
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVS 144 (540)
T ss_pred eEEEeeccccCCceEEEEec
Confidence 59999999999999999964
No 263
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=36.86 E-value=91 Score=18.35 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=19.6
Q ss_pred EEEEEEeeeeeCCCEEEEEEEEc
Q psy6638 17 ISELGIANVLRQDSGTLSCLATN 39 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~~y~~~a~n 39 (273)
..+|.+.....+-.|.|.|.+.+
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc
Confidence 45788888888999999998876
No 264
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=36.47 E-value=1e+02 Score=18.91 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=22.8
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
..+.|.++.+.....|.|.|.|..|..
T Consensus 58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 58 ASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCce
Confidence 367889999999999999999988743
No 265
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=35.98 E-value=1.9e+02 Score=26.26 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=42.2
Q ss_pred cceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC---CC--------CCCccceEEecCCccEEEecCCCCCCeEE
Q psy6638 60 KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE---EM--------WPTQPLKIIVPGSQTSATLQPLLPATQYQ 128 (273)
Q Consensus 60 ~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~y~ 128 (273)
..+++...+.+.+.|.|+.. +.-..|.|+..... +. |.+ .-.......+. ..+.|.+.|.
T Consensus 9 tslrI~kLsaN~v~l~WddV----G~NFyY~Ve~a~t~~~~g~~ip~~~~~w~n----lg~T~~~~wFe-d~~~p~t~Yk 79 (1030)
T PHA02579 9 TSLRIDKLSANQVYLTWDDV----GANFYYFVELAETRDADGELIPDDELRWIN----LGYTANNEWFE-DKLQPNTYYK 79 (1030)
T ss_pred cEEEhhhhccceEEEEeecc----CCceEEEEEEEeeccCCCccCCCcccccee----cCcccchhhhh-hccCCcceEE
Confidence 45667777899999999854 23457888887532 11 221 11111222232 3489999999
Q ss_pred EEEEEeCC
Q psy6638 129 VRLLAENP 136 (273)
Q Consensus 129 ~~v~a~~~ 136 (273)
+||+....
T Consensus 80 ~Rv~~~~q 87 (1030)
T PHA02579 80 FRVAVAAQ 87 (1030)
T ss_pred EEEEeecc
Confidence 99987654
No 266
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=35.69 E-value=70 Score=26.96 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=17.3
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~ 151 (273)
..+.+.+|.|++.|.|++..... ...+..-.++|.
T Consensus 64 ~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~ 98 (453)
T PF09423_consen 64 VKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTA 98 (453)
T ss_dssp EEEEE-S--TT-EEEEEEEE--T---TEE---EEEE--
T ss_pred eecccCCCCCCceEEEEEEEecC---CCCCCceEEEcC
Confidence 45788999999999999988322 222333456664
No 267
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=35.52 E-value=92 Score=18.63 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=11.1
Q ss_pred CCCEEEEEEEEcCCCC
Q psy6638 28 QDSGTLSCLATNYHGT 43 (273)
Q Consensus 28 ~~~~~y~~~a~n~~g~ 43 (273)
++...|+|.+.+....
T Consensus 55 d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 55 DDGAPIICRVDHPALK 70 (82)
T ss_pred hCCCEEEEEEeChhcC
Confidence 3456899998876543
No 268
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=35.52 E-value=1.6e+02 Score=20.72 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.2
Q ss_pred cCCCCccceEEEEEEEecCCCcC
Q psy6638 227 IPGLTPYTKYAIVVRGYNSVGKG 249 (273)
Q Consensus 227 i~~L~p~~~Y~~~v~a~n~~g~~ 249 (273)
+..|+.+..|.+.|.|.+.+|..
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCE
Confidence 35788999999999999999974
No 269
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=35.23 E-value=93 Score=18.02 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=24.3
Q ss_pred CccEEEecCCCCCCeEEEEEEEeCCCCCCC
Q psy6638 112 SQTSATLQPLLPATQYQVRLLAENPLGMSE 141 (273)
Q Consensus 112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~ 141 (273)
....+.|.++.......|.+.|.|..|...
T Consensus 37 ~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~ 66 (76)
T cd05736 37 NGSELHISNVRYEDTGAYTCIAKNEAGVDE 66 (76)
T ss_pred CCCEEEECcCCcccCEEEEEEEEcCCCCcc
Confidence 345678888988888999999999988654
No 270
>PF10333 Pga1: GPI-Mannosyltransferase II co-activator; InterPro: IPR019433 Pga1 is found only in yeasts and not in mammals. It localises in the ER as a glycosylated integral membrane protein. It binds to the GPI-mannosyltransferase II subunit of the GPI and it is responsible for the second mannose addition to GPI precursors. The GPI-anchoring complex is a glycolipid that functions as a membrane anchor for many cell-surface proteins [].
Probab=32.57 E-value=67 Score=23.16 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.0
Q ss_pred cccEEEcCCCCccceEEEEEE
Q psy6638 221 YEGELRIPGLTPYTKYAIVVR 241 (273)
Q Consensus 221 ~~~~~~i~~L~p~~~Y~~~v~ 241 (273)
.+..+.+.+|++|..|.+++.
T Consensus 64 ~t~~V~L~nl~~~e~y~vKiC 84 (180)
T PF10333_consen 64 STTYVELNNLQPGETYQVKIC 84 (180)
T ss_pred ceEEEEeccCCCCCeEEEEEE
Confidence 356778999999999999987
No 271
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=32.17 E-value=1e+02 Score=20.70 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=23.4
Q ss_pred eeEEEEEEecCCcEEEEEEe--eeeeCCCEEEEEEEE
Q psy6638 4 RYTIREQVLEDGMISELGIA--NVLRQDSGTLSCLAT 38 (273)
Q Consensus 4 r~~~~~~~~~~~~~~~l~i~--~~~~~~~~~y~~~a~ 38 (273)
|.--...++..|...++.+. .+.++..|.|.|..-
T Consensus 77 ~ViAhTkliggGes~svtF~~~~l~~g~~Y~f~CSFP 113 (125)
T TIGR02695 77 RVIAHTKVIGGGEKTSVTFDVSKLSAGEDYTFFCSFP 113 (125)
T ss_pred ceEEEccccCCCceEEEEEECCCCCCCCcceEEEcCC
Confidence 44445566667766666665 456777899999753
No 272
>KOG3834|consensus
Probab=31.53 E-value=1.4e+02 Score=24.79 Aligned_cols=71 Identities=24% Similarity=0.441 Sum_probs=47.0
Q ss_pred eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638 161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV 240 (273)
Q Consensus 161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v 240 (273)
.+++.. .....+++.|-.+... +.|.++++.|.+....... ...|+...+.+. .-..+-+|.+++.|.+-+
T Consensus 67 kltv~n--~kt~~~R~v~I~ps~~-wggqllGvsvrFcsf~~A~----~~vwHvl~V~p~--SPaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 67 KLTVYN--SKTQEVRIVEIVPSNN-WGGQLLGVSVRFCSFDGAV----ESVWHVLSVEPN--SPAALAGLRPYTDYIVGI 137 (462)
T ss_pred EEEEEe--cccceeEEEEeccccc-ccccccceEEEeccCccch----hheeeeeecCCC--CHHHhcccccccceEecc
Confidence 444444 4556788889888765 4666899999998774322 113455554443 356778899999988766
No 273
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=31.21 E-value=1.2e+02 Score=18.19 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=23.9
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLGMS 140 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~~ 140 (273)
...+.|.++.......|.+.|.|..|..
T Consensus 52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (88)
T cd04968 52 GAVLKIPNIQFEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCEEEECCCCcccCEEEEEEEEECCCcE
Confidence 4578889999999999999999998854
No 274
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=31.14 E-value=1.2e+02 Score=17.99 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=21.5
Q ss_pred cEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638 114 TSATLQPLLPATQYQVRLLAENPLGM 139 (273)
Q Consensus 114 ~~~~~~~l~~~~~y~~~v~a~~~~g~ 139 (273)
..+.|.++.+.....|++.|.|..|.
T Consensus 51 ~~l~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05857 51 WSLIMESVVPSDKGNYTCVVENEYGS 76 (85)
T ss_pred eEEEEccCCcccCEEEEEEEEeCCCE
Confidence 45677888888889999999999884
No 275
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=30.79 E-value=1.3e+02 Score=18.19 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=14.5
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHG 42 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g 42 (273)
.|.|.-...++...|+|.+.+...
T Consensus 47 ~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 47 SVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEecchhCCCEEEEEEECccc
Confidence 344433344566788998887653
No 276
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=30.76 E-value=1.3e+02 Score=18.23 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=13.2
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCC
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYH 41 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~ 41 (273)
.|.|..-...+...|+|.+.+..
T Consensus 47 ~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 47 TLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEcccccCCCEEEEEEechh
Confidence 34443333445668888887654
No 277
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=30.44 E-value=82 Score=19.21 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=17.0
Q ss_pred cEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638 16 MISELGIANVLRQDSGTLSCLATNYH 41 (273)
Q Consensus 16 ~~~~l~i~~~~~~~~~~y~~~a~n~~ 41 (273)
..++|.|.--..+|.-.|+|+|.|..
T Consensus 42 ~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 42 VTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEEECchhhCCCEEEEEEcCcc
Confidence 35566665444445559999999864
No 278
>PHA03286 envelope glycoprotein E; Provisional
Probab=28.93 E-value=3.6e+02 Score=22.84 Aligned_cols=38 Identities=32% Similarity=0.284 Sum_probs=30.0
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEE-EEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTI-QLLV 52 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~-~~~~ 52 (273)
+..+.|+|.+.++.+.|.|+....|+.|.+...+ .+.+
T Consensus 124 ~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 124 GRGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred CCCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 3446799999999999999999998877766644 4444
No 279
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=28.31 E-value=2e+02 Score=24.51 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=25.9
Q ss_pred ccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638 222 EGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262 (273)
Q Consensus 222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~ 262 (273)
+..+.+.+|.|++.|.+|+.+.+.. +..-.++|.+.
T Consensus 100 tv~v~~~gL~P~~~yfYRf~~~~~~-----spvGrtrTapa 135 (522)
T COG3540 100 TVHVDLRGLSPDQDYFYRFKAGDER-----SPVGRTRTAPA 135 (522)
T ss_pred eEEEeccCCCCCceEEEEEeeCCcc-----ccccccccCCC
Confidence 4567889999999999999998642 23344555443
No 280
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=28.25 E-value=74 Score=21.51 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~ 51 (273)
.|.+.....- .|.|+|.+..........+.+.
T Consensus 87 SL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk 118 (130)
T PF08204_consen 87 SLKMDKSDAV-EGNYTCEVTELSREGETTIELK 118 (130)
T ss_dssp -EEEEHHHHH--EEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEcchhcc-ccceEEEEEecCCCceEEEEEE
Confidence 4666664444 8999999987655554444443
No 281
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=26.80 E-value=1.2e+02 Score=19.28 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=17.4
Q ss_pred EEEEEEeeeeeCCCE-EEEEEEEcCCCC
Q psy6638 17 ISELGIANVLRQDSG-TLSCLATNYHGT 43 (273)
Q Consensus 17 ~~~l~i~~~~~~~~~-~y~~~a~n~~g~ 43 (273)
.++|.+. ..++|.| .|+|.|.+.++.
T Consensus 61 ~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 61 PATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred EEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 4556665 4455555 999999987644
No 282
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=25.48 E-value=94 Score=20.17 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=19.3
Q ss_pred CcccEEEcCCCCccceEEEEEEEe
Q psy6638 220 QYEGELRIPGLTPYTKYAIVVRGY 243 (273)
Q Consensus 220 ~~~~~~~i~~L~p~~~Y~~~v~a~ 243 (273)
+.+..+.+.+|+.+..|.++.+..
T Consensus 86 ~dt~tisL~nlqk~kEY~V~ftGt 109 (132)
T PF15417_consen 86 GDTFTISLNNLQKEKEYVVCFTGT 109 (132)
T ss_pred cceEEEEhhhcccCceEEEEEecc
Confidence 335678899999999999988754
No 283
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=25.28 E-value=88 Score=20.19 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEeeeeeCCCEEEEEEEEcCCCCceeEE
Q psy6638 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTI 48 (273)
Q Consensus 19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~ 48 (273)
.|.|++...-..|.|+|......|.+...+
T Consensus 94 vL~vt~t~Kf~h~rfTCVL~t~DGvskk~i 123 (126)
T PF05566_consen 94 VLHVTDTEKFAHYRFTCVLTTIDGVSKKNI 123 (126)
T ss_dssp EEEE--TTTTTTEEEEEEEEETTEEEEE--
T ss_pred eeeecchhhccceeEEEEEEcCCccccccc
Confidence 466788888899999999988777665543
No 284
>KOG1225|consensus
Probab=25.01 E-value=1.9e+02 Score=25.05 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=60.6
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEE-cCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638 15 GMISELGIANVLRQDSGTLSCLAT-NYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY 93 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~-n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~ 93 (273)
+......|..+.+.+.+.-++.+. +..|+..... .....-.-+..+.+.....+++.+.|..|.. ....+.+.+
T Consensus 415 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~g~~~v~~~~~~s~e~~g~~~s~---~~~~~~~~~ 489 (525)
T KOG1225|consen 415 GDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDK--SETTVLCWNGGLCVDGETESSLEVGGPCPSS---GTCGWEVRC 489 (525)
T ss_pred cceeeeeeeeecCCcceeeehhhhhhhhccCCccc--ccceEeecCCceeeeeeeeccccccCCCCCc---cccceEEEe
Confidence 345567778888888766555432 2222222211 1122223455666777888899999998754 344666776
Q ss_pred EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638 94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL 131 (273)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v 131 (273)
...... ...........+.+...+|.+++.|.+.+
T Consensus 490 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 490 GPCGND---GGVNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred eecCcc---cccccCCCCCCCCCCccCcccccceeccc
Confidence 332211 00111222244566777888888887653
No 285
>KOG4228|consensus
Probab=24.29 E-value=3e+02 Score=26.27 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=36.4
Q ss_pred EEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638 65 TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA 144 (273)
Q Consensus 65 ~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~ 144 (273)
...+...+++.|.++... .+..|.+.......... ...............+.+-..+.+++.+....+.+....
T Consensus 173 ~~~~~~~it~~w~~~~~~--~~~~ykl~~~~~d~~~~----~~v~~~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a 246 (1087)
T KOG4228|consen 173 EEEEYTTITGSWSPPHAV--SLDTYKLLHLDPDTGYE----ISVTLTPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTA 246 (1087)
T ss_pred cceEEEEEEecCCCCCcc--cchhhhhhhcCCcccce----eeeeccCCCCCcccCCCCcccccccccCccccccCCCCc
Confidence 344566778888876432 34455555444322111 111111122223344555555666665554444443344
Q ss_pred ceEEEe
Q psy6638 145 ELQAST 150 (273)
Q Consensus 145 ~~~~~~ 150 (273)
.+..++
T Consensus 247 ~i~~r~ 252 (1087)
T KOG4228|consen 247 EIEARQ 252 (1087)
T ss_pred ceEEEe
Confidence 444443
No 286
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=24.25 E-value=1.4e+02 Score=16.71 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=15.8
Q ss_pred cceEEEEEEEecCCCcCCCC
Q psy6638 233 YTKYAIVVRGYNSVGKGPFS 252 (273)
Q Consensus 233 ~~~Y~~~v~a~n~~g~~~~s 252 (273)
...|.+.+++.+.+|....+
T Consensus 22 dg~yt~~v~a~D~AGN~~~~ 41 (60)
T PF12245_consen 22 DGEYTLTVTATDKAGNTSSS 41 (60)
T ss_pred CccEEEEEEEEECCCCEEEe
Confidence 34899999999999985433
No 287
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=23.60 E-value=95 Score=22.35 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.6
Q ss_pred cEEEcCCCCccceEEEEEEEecC
Q psy6638 223 GELRIPGLTPYTKYAIVVRGYNS 245 (273)
Q Consensus 223 ~~~~i~~L~p~~~Y~~~v~a~n~ 245 (273)
..|.|.||.|...|.+.+...-.
T Consensus 33 l~y~vsGL~p~~~Y~i~l~~~~~ 55 (184)
T PF00907_consen 33 LEYSVSGLDPDSLYSISLHFERV 55 (184)
T ss_dssp EEEEEESS-TTSEEEEEEEEEES
T ss_pred cEEEecCCCCCcceEEEEEEEEe
Confidence 57899999999999998887643
No 288
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=23.59 E-value=2.1e+02 Score=20.30 Aligned_cols=27 Identities=22% Similarity=-0.091 Sum_probs=22.0
Q ss_pred CcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638 15 GMISELGIANVLRQDSGTLSCLATNYH 41 (273)
Q Consensus 15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~ 41 (273)
+..--|.|.+..++|.|.|.++..-..
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEECC
Confidence 345669999999999999999987543
No 289
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=22.48 E-value=1.9e+02 Score=17.36 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=21.3
Q ss_pred ccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638 113 QTSATLQPLLPATQYQVRLLAENPLG 138 (273)
Q Consensus 113 ~~~~~~~~l~~~~~y~~~v~a~~~~g 138 (273)
...+.|.++.+.....|.+.|.+..+
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECcc
Confidence 34688899999999999999987654
No 290
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=22.45 E-value=1.2e+02 Score=16.26 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=10.3
Q ss_pred eEEEEEEEecCCC
Q psy6638 235 KYAIVVRGYNSVG 247 (273)
Q Consensus 235 ~Y~~~v~a~n~~g 247 (273)
.|.|.|.+.+..|
T Consensus 37 ~y~~~vtatd~~G 49 (49)
T PF05345_consen 37 TYTFTVTATDGSG 49 (49)
T ss_pred EEEEEEEEEcCCC
Confidence 7888888887654
No 291
>PF14299 PP2: Phloem protein 2
Probab=22.26 E-value=2.8e+02 Score=19.35 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=17.8
Q ss_pred EEEcCCCCccceEEEEEEEecCCC
Q psy6638 224 ELRIPGLTPYTKYAIVVRGYNSVG 247 (273)
Q Consensus 224 ~~~i~~L~p~~~Y~~~v~a~n~~g 247 (273)
.+....|.|++.|.+.....-...
T Consensus 50 ~i~~~~Lsp~t~Y~vy~v~kl~~~ 73 (154)
T PF14299_consen 50 KINTRMLSPGTTYAVYFVFKLKDD 73 (154)
T ss_pred EEEceEcCCCCEEEEEEEEEecCC
Confidence 455566899999998888775443
No 292
>KOG4680|consensus
Probab=21.78 E-value=1.9e+02 Score=19.75 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=22.2
Q ss_pred cEEEcCCCCccceEEEEEEEecCCCc
Q psy6638 223 GELRIPGLTPYTKYAIVVRGYNSVGK 248 (273)
Q Consensus 223 ~~~~i~~L~p~~~Y~~~v~a~n~~g~ 248 (273)
.+..|.+..|-..|.+.+++.+.+|.
T Consensus 108 hsq~LPg~tPPG~Y~lkm~~~d~~~~ 133 (153)
T KOG4680|consen 108 HSQVLPGYTPPGSYVLKMTAYDAKGK 133 (153)
T ss_pred eeEeccCcCCCceEEEEEEeecCCCC
Confidence 46678888888899999999998774
No 293
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=21.69 E-value=1.7e+02 Score=17.04 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=6.5
Q ss_pred CCCEEEEEEEEc
Q psy6638 28 QDSGTLSCLATN 39 (273)
Q Consensus 28 ~~~~~y~~~a~n 39 (273)
++...|+|.+..
T Consensus 58 ~~~~~~tC~V~H 69 (75)
T smart00407 58 ESGDTYTCQVTH 69 (75)
T ss_pred CCCCEEEEEEEE
Confidence 444566666543
No 294
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=21.54 E-value=89 Score=18.36 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=25.2
Q ss_pred cceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638 187 NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV 240 (273)
Q Consensus 187 ~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v 240 (273)
.|.-..|++..+..++- -+.. .-....+|+||.++++++
T Consensus 25 ~GR~~syr~~Vq~NGnL------------LIG~---AYT~~m~L~PGdEFeI~L 63 (71)
T PF14250_consen 25 RGRKASYRVSVQGNGNL------------LIGS---AYTKQMGLKPGDEFEIKL 63 (71)
T ss_pred CCcCceEEEEEecCCCE------------EEcH---HHHHHhCCCCCCEEEEEe
Confidence 45566899988877641 1111 122345899999999876
No 295
>PF11811 DUF3331: Domain of unknown function (DUF3331); InterPro: IPR021769 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.
Probab=21.14 E-value=2e+02 Score=18.27 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=16.4
Q ss_pred eeEEecCCccCCceEEEEEeCCCC
Q psy6638 160 REVTSDPGVVDPTELLIKWKAPPR 183 (273)
Q Consensus 160 ~~~~~~~~~~~~~~i~l~W~~~~~ 183 (273)
..+.+... .++++++|.|..+..
T Consensus 16 ~~I~vlEr-~S~~t~~V~W~D~~~ 38 (96)
T PF11811_consen 16 VRIRVLER-PSDTTLSVSWSDPTR 38 (96)
T ss_pred CEEEEEEe-cCCCEEEEEEECCCC
Confidence 34554440 589999999999864
No 296
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=20.38 E-value=2.5e+02 Score=18.04 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=28.3
Q ss_pred eeeeEEEEEEEc--CCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC
Q psy6638 189 VLLGYDVGYQIS--SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS 245 (273)
Q Consensus 189 ~i~~y~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~ 245 (273)
.+-.|.+.-|.. ++.+ -+-.+.........+.|.-|..+..|.+.+..-..
T Consensus 12 ~pGeyvviARr~~~G~~W------yvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~ 64 (103)
T PF14509_consen 12 YPGEYVVIARRKRDGDDW------YVGGINGEDARTITLPLSFLDKGKKYTATIYTDGP 64 (103)
T ss_dssp ETTTEEEEEEEETTTTEE------EEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-T
T ss_pred cCceEEEEEEEcCCCCCE------EEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCC
Confidence 344677777776 4432 12222223333456788899999999999988764
Done!