RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6638
(273 letters)
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 185 bits (470), Expect = 2e-56
Identities = 49/258 (18%), Positives = 85/258 (32%), Gaps = 16/258 (6%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
++ T + G L IA D G +C ATN+ GT L + + P +P +
Sbjct: 143 AKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGV 202
Query: 63 RITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
+I E S + ++S+ P G I Y + K E+ + G QT L L
Sbjct: 203 KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVK---EVASEIWKIVRSHGVQTMVVLNNL 259
Query: 122 LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
P T Y++R+ A N G + TL P +
Sbjct: 260 EPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQP---SSGKSFKLSIT-- 314
Query: 182 PRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR 241
++ +L Y V Y+ ++ + + + L Y + +
Sbjct: 315 KQDDGGAPILEYIVKYRSKDKED------QWLEKKVQGN-KDHIILEHLQWTMGYEVQIT 367
Query: 242 GYNSVGKGPFSEPFIART 259
N +G + +
Sbjct: 368 AANRLGYSEPTVYEFSMP 385
Score = 86.8 bits (215), Expect = 9e-20
Identities = 44/264 (16%), Positives = 82/264 (31%), Gaps = 32/264 (12%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
R +V S L I +V DSG C A + G + ++ L ++ P
Sbjct: 53 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYS 112
Query: 65 TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPA 124
E + ++ N + I + + + + L+ + P
Sbjct: 113 WEGNPINISC----DVKSNPPAS--IHWRRDKLVLPAKNTTNLKTYSTGRKMILE-IAPT 165
Query: 125 T-----QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWK 179
+ +Y A N +G L L + P +P V + T + +
Sbjct: 166 SDNDFGRYNCT--ATNHIGTRFQEYIL---ALADVP-SSPYGVKIIE--LSQTTAKVSFN 217
Query: 180 APPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIV 239
P + Y V + + + + + + + L P T Y I
Sbjct: 218 -KPDSHGGVPIHHYQVDVKEVASEI--------WKIVRSHGVQTMVVLNNLEPNTTYEIR 268
Query: 240 VRGYNSVGKGPFSEPFIARTNEGD 263
V N G+G +S+ I +T
Sbjct: 269 VAAVNGKGQGDYSKIEIFQTLPVR 292
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 174 bits (443), Expect = 1e-54
Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 12/213 (5%)
Query: 51 LVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP 110
+VQ+ P APK IT + +I W + I Y IQ+ +S VP
Sbjct: 1 IVQDVPNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGAPREVTSDPGVV 169
+ S+ + + P Y R++A N +G S + +T + P P V
Sbjct: 60 NT-DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQG--T 116
Query: 170 DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG 229
+P L+I W P N Y V ++ ++ ++ + + + + I
Sbjct: 117 EPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAA------AWENNNIFDWRQNNIVIAD 170
Query: 230 LTPYTKYAIVVRGYNSVGKGPFS-EPFIARTNE 261
+ KY I V N G+ + E + + E
Sbjct: 171 QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 203
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 175 bits (445), Expect = 2e-50
Identities = 50/263 (19%), Positives = 91/263 (34%), Gaps = 15/263 (5%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETPEAPKNI 62
+ I+ + N ++D+G C+ G +L+V+E P
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268
Query: 63 RITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
++ + L I A +G+ I ++Y ++ W P TS + L
Sbjct: 269 QLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSW-----NDRQPVDSTSYKIGHL 323
Query: 122 LPATQYQVRLLAENP--LGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWK 179
P T+Y++ +L P G G L+ T P PR++ V ++ I+W+
Sbjct: 324 DPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLE--VVEVKSRQITIRWE 381
Query: 180 APPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIV 239
V Y G + + I L+PYT ++
Sbjct: 382 PFGYNVTRCHSYNLTVHYCYQVGGQ---EQVREEVSWDTENSHPQHTITNLSPYTNVSVK 438
Query: 240 VRGYNSVGKGPFSEPFIARTNEG 262
+ N G+ S+ I +T+E
Sbjct: 439 LILMNPEGRKE-SQELIVQTDED 460
Score = 132 bits (334), Expect = 3e-35
Identities = 50/241 (20%), Positives = 80/241 (33%), Gaps = 16/241 (6%)
Query: 32 TLSCLATNYH--GTAEMTIQLLVQETPE----APKNIRITEESSRSLQISWTAPYS--GN 83
+S L T GT L + P+ + + E SR + I W
Sbjct: 330 EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTR 389
Query: 84 TAITQYIIQYK--SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
+ Y + + + S T+ L P T V+L+ NP G E
Sbjct: 390 CHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE 449
Query: 142 TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISS 201
+ EL T E+ P P E G ++ ++W+ P + GV+ Y++ Y+ S
Sbjct: 450 S-QELIVQTDEDLPGAVPTESIQ--GSTFEEKIFLQWREPTQT--YGVITLYEITYKAVS 504
Query: 202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
+ E GL P T Y+ +R + G GP + T
Sbjct: 505 SFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATN-QFTTKI 563
Query: 262 G 262
Sbjct: 564 S 564
Score = 116 bits (290), Expect = 2e-29
Identities = 39/246 (15%), Positives = 60/246 (24%), Gaps = 43/246 (17%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPL-----KIIVP 110
P + + W P IT Y I YK+ P L ++
Sbjct: 463 GAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKL 522
Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD 170
G++T L P T Y + A G A Q +T AP P P
Sbjct: 523 GNETHFLFFGLYPGTTYSFTIRASTAKGFGPP-ATNQFTTKISAP-SMPAYELETPLNQT 580
Query: 171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL------------- 217
+ + K S + Y + + ++ LK +
Sbjct: 581 DNTVTVMLKPA--HSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQ 638
Query: 218 ---------------------DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFI 256
DN+ L PY Y I + + +
Sbjct: 639 YYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQ 698
Query: 257 ARTNEG 262
T
Sbjct: 699 VATKGA 704
Score = 44.0 bits (103), Expect = 4e-05
Identities = 19/148 (12%), Positives = 35/148 (23%), Gaps = 41/148 (27%)
Query: 53 QETPEAPKNIRITEE--SSRSLQISWTAPYSGNTAITQYIIQYK----SSEEMWPTQPLK 106
P P T + ++ + +S ++ Y I + +
Sbjct: 563 ISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKC 622
Query: 107 IIVPGSQTSATLQ-----------------------------------PLLPATQYQVRL 131
VP +A+L PLLP Y++
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682
Query: 132 LAENPLGMSETGAELQASTLEEAPNGAP 159
A + +Q +T A
Sbjct: 683 QAASRANGETKIDCVQVATKGAATPKPV 710
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 151 bits (384), Expect = 1e-45
Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 14/213 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP----YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
P ++ + S +++I+W + T Y +++K++
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKY---KNANA 61
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
+ S + L P T Y+ ++ S +T E P P++VT P
Sbjct: 62 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKP 121
Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
+++ W+ P NG + GY + Y + + + ++ V + +I LT
Sbjct: 122 KTIIVNWQPPSE--ANGKITGYIIYYSTDVNAE--IHDWVIEPVVGNRL---THQIQELT 174
Query: 232 PYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDF 264
T Y ++ NS G GP SE RT +
Sbjct: 175 LDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHH 207
Score = 77.5 bits (191), Expect = 2e-17
Identities = 23/103 (22%), Positives = 41/103 (39%)
Query: 54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
+P + E +++ ++W P N IT YII Y + + V G++
Sbjct: 106 TSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNR 165
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN 156
+ +Q L T Y ++ A N GM +Q T + +
Sbjct: 166 LTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHH 208
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 144 bits (365), Expect = 9e-43
Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 23/219 (10%)
Query: 55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS----------SEEMWPTQP 104
+ P +T S S+ + W P + I + +QY+ ++ + +P
Sbjct: 1 STYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 105 LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE----TGAELQASTLEEAPNGAPR 160
G +A++ L P Y+ R+LA ++ + P P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQ 220
+ + T +++ W ++ ++ GY Y+ SS + Y ++E +
Sbjct: 121 LLEIEE--YSETAVVLHWS-LASDADEHLITGYYAYYRPSSSA----GEYFKATIEGAH- 172
Query: 221 YEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
+I L T Y ++ +++ FS RT
Sbjct: 173 -ARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 142 bits (359), Expect = 4e-42
Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 17/202 (8%)
Query: 54 ETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
+TP P+++++ E + S+ ++W P G + I YI++ + S + +
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYS---TVATNCH 60
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
+TS + L Y R+LAEN G+ ++ E P P ++T V
Sbjct: 61 KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLMD--VTRN 117
Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
+ + W+ P +LGY V Q + + + I GL
Sbjct: 118 SVSLSWE-KPEHDGGSRILGYIVEMQTKGS-----DKWATCATVKVTEA----TITGLIQ 167
Query: 233 YTKYAIVVRGYNSVGKGPFSEP 254
+Y+ V N G +
Sbjct: 168 GEEYSFRVSAQNEKGISDPRQL 189
Score = 74.7 bits (184), Expect = 2e-16
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 37 ATNYHGT---AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQ 92
A N +G AE + E P P I + + + S+ +SW P + G + I YI++
Sbjct: 81 AENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVE 140
Query: 93 YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
++ T AT+ L+ +Y R+ A+N G+S+ +
Sbjct: 141 MQTKGSDKWAT----CATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Query: 153 E 153
+
Sbjct: 197 D 197
Score = 43.5 bits (103), Expect = 2e-05
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
G P+++ V T + + W PP + Y V + S+ + + +
Sbjct: 7 GPPQDLKVKE--VTKTSVTLTWD-PPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
++ L Y V N G G +E +
Sbjct: 64 W--------KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVK 98
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 140 bits (355), Expect = 4e-41
Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 13/204 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
AP+N SR + +W P + Y ++Y + ++ S
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSESEA---HLLDSKVPS 59
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL 175
L L P Y++++ A G + + T +E P P + + V T
Sbjct: 60 VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNV--VSSTVTQ 116
Query: 176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK 235
+ W P NG + Y+V Y + + + + +K V +DN L I L
Sbjct: 117 LSWAEPAET--NGEITAYEVCYGLVNDDNRPIG--PMKKVLVDNPKNRMLLIENLRESQP 172
Query: 236 YAIVVRGYNSVGKGPFSEPFIART 259
Y V+ N G GP E I
Sbjct: 173 YRYTVKARNGAGWGPEREAIINLA 196
Score = 79.8 bits (197), Expect = 5e-18
Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 7/137 (5%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK---SSEEMWPTQPLKIIV 109
QE P P + SS Q+SW P N IT Y + Y ++
Sbjct: 96 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 155
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGAPREVTSDPGV 168
++ L + Y+ + A N G A + +T + P P
Sbjct: 156 NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVD 215
Query: 169 VDPTEL---LIKWKAPP 182
E + +
Sbjct: 216 AQSGEDYDSFLMYSDDV 232
Score = 77.5 bits (191), Expect = 3e-17
Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 15/111 (13%)
Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
GAP+ + ++ W P +G +GY V Y I S
Sbjct: 2 SHMDLGAPQNPNA--KAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLD 54
Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
K + + L PY Y + V Y + G+GP+S RT++
Sbjct: 55 SK--------VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE 97
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 146 bits (369), Expect = 2e-40
Identities = 52/241 (21%), Positives = 90/241 (37%), Gaps = 23/241 (9%)
Query: 26 LRQDSGTLSCLATNYHGTAE---MTIQLLVQETPEAPKNIRI--TEESSRSLQISWTAPY 80
+ + + A N G + + + P P N+ + +EE S L+++WT P
Sbjct: 166 VYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS 225
Query: 81 SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG-- 138
+ I +Y IQY++ + +Q +++S T+Q L P T+Y R+ G
Sbjct: 226 IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 285
Query: 139 -MSETGAELQASTLEEAPNGAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDV 195
S+ E T E+ P+ AP + + WK P NG +L Y+V
Sbjct: 286 YWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEV 345
Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF 255
+YT+ + +L +Y + N VGK +
Sbjct: 346 TLTRWKSHL---QNYTVNATKLT----------VNLTNDRYLATLTVRNLVGKSDAAVLT 392
Query: 256 I 256
I
Sbjct: 393 I 393
Score = 113 bits (284), Expect = 1e-28
Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 16/241 (6%)
Query: 26 LRQDSGTLSCLATNYHGTAEM--TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN 83
+ + L+C + + I ++ PE PKN+ + ++ W +
Sbjct: 71 IASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH 130
Query: 84 TAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETG 143
T + ++ + + + K + + +V + AEN LG +
Sbjct: 131 L-ETNFTLKSEWATHKFADCKAK--RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS- 186
Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS 203
+ + + P ++ + L + W P + ++L Y++ Y+
Sbjct: 187 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKYNIQYRTKDA- 243
Query: 204 SLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP---FIARTN 260
S+++ E + L P+T+Y +R GKG +S+ T
Sbjct: 244 ----STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 299
Query: 261 E 261
E
Sbjct: 300 E 300
Score = 105 bits (264), Expect = 6e-26
Identities = 38/238 (15%), Positives = 76/238 (31%), Gaps = 21/238 (8%)
Query: 26 LRQDSGTLSCLATNYHGT---AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSG 82
L D + N G A +TI + +++ L + WT P
Sbjct: 368 LTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP-KDNMLWVEWTTP--- 423
Query: 83 NTAITQYIIQYK-SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
++ +YI+++ S++ + + L + Y + + G
Sbjct: 424 RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGS 483
Query: 142 TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISS 201
++A + P V + V E +++W P + NG + Y + Y+
Sbjct: 484 P-ESIKAYLKQAPP-SKGPTVRTKK--VGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 539
Query: 202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
G+ ++ + S E + LT T Y + + Y G E
Sbjct: 540 GNE---TAVNVDSSHT------EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTP 588
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 141 bits (356), Expect = 2e-38
Identities = 42/240 (17%), Positives = 89/240 (37%), Gaps = 12/240 (5%)
Query: 27 RQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAI 86
+ SG C + T ++ L + K +R TE S L++ W++ ++ +
Sbjct: 132 NECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEP 191
Query: 87 TQYIIQYKSSEEMWPTQPL----KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET 142
Y++Q + + + P++ + + + L + P+ YQ R+ A N G
Sbjct: 192 VIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGF 251
Query: 143 GAELQASTLEEAPN--GAPREVT---SDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
A + + P+ AP + S + I W P E + + Y V +
Sbjct: 252 TAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP--EEPDIPVHHYKVFW 309
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
SS +L K + + ++ + + L P Y + ++ G+ ++
Sbjct: 310 S-WMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVS 368
Score = 94.3 bits (233), Expect = 5e-22
Identities = 41/262 (15%), Positives = 69/262 (26%), Gaps = 34/262 (12%)
Query: 37 ATNYHGTAEMTIQLLVQETPEAPK-----------NIRITEESSRSLQISWTAPYSGNTA 85
A N HGT T + + P N + + S ++ I W P +
Sbjct: 242 AVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIP 301
Query: 86 ITQYIIQYKSSEEMWPTQPLK----IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
+ Y + + P K G Q S L+ L P Y V L A G +
Sbjct: 302 VHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTR 361
Query: 142 TGAELQA--STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP----------------R 183
+ + T A N + V + G + + + +
Sbjct: 362 LKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVK 421
Query: 184 ESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQ-YEGELRIPGLTPYTKYAIVVRG 242
W Y + + T S +E + + L+ KY + V+
Sbjct: 422 VYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQP 481
Query: 243 YNSVGKGPFSEPFIARTNEGDF 264
F
Sbjct: 482 IRPKSHSKAEAVFFTTPPCSAL 503
Score = 88.1 bits (217), Expect = 7e-20
Identities = 38/234 (16%), Positives = 72/234 (30%), Gaps = 28/234 (11%)
Query: 55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK--SSEEMWPTQPLKIIVPGS 112
P P + LQ+ + + + +Y +++ + T
Sbjct: 401 RPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTH 460
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNG--------------- 157
+ LQ L + +Y+V + P S+ A + A G
Sbjct: 461 ENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHV 520
Query: 158 ------APREVTSDPGVVD-PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS- 209
P +++ V D WK + + + G+ V + + S S
Sbjct: 521 LSKVLAKPENLSASFIVQDVNITGHFSWK-MAKANLYQPMTGFQVTWAEVTTESRQNSLP 579
Query: 210 -YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
+ ++ L +P L P T Y + V+ G+GP + RT E
Sbjct: 580 NSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTF-RTPEL 632
Score = 51.1 bits (121), Expect = 2e-07
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
+ + P +E+ + +L +KW + S V Y V + + G +
Sbjct: 154 TLYKGVPLKPRKELRFT--ELQSGQLEVKWSSKFNISIEPV--IYVVQRRWNYGIHPSED 209
Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD 263
T + + +++ + P Y V N G F+ P + D
Sbjct: 210 DAT-HWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKD 263
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 132 bits (334), Expect = 3e-38
Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 15/211 (7%)
Query: 49 QLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYK-SSEEMWPTQPLK 106
L +TP +P E S + Q+ + P +G I +Y +++ EE+W ++
Sbjct: 2 PLAQADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
+ T+ L P T Y VRL A N G+ E A + T AP+
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMG 120
Query: 167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR 226
D + + + + Y V Y+ S +
Sbjct: 121 --EDGNSIKVNLIKQ--DDGGSPIRHYLVRYRALSSEWKPEIRLPSG--------SDHVM 168
Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ L +Y + V N GK +
Sbjct: 169 LKSLDWNAEYEVYVVAENQQGKSKAAHFVFR 199
Score = 54.4 bits (131), Expect = 3e-09
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV-LLGYDVGYQISSGSSLALS 208
+ P +P +P + +++ P E+ GV +L Y ++
Sbjct: 4 AQADTP-SSPSIDQVEPY---SSTAQVQFDEP--EATGGVPILKYKAEWRAVGEEVWHSK 57
Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
Y K ++ I GL P T YA+ + N G G S +T
Sbjct: 58 WYDAKEASMEGIVT----IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 106
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 137 bits (347), Expect = 2e-37
Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 23/250 (9%)
Query: 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTA 78
+ L G SC A + P + + +++ WT
Sbjct: 296 LECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTP 355
Query: 79 P-YSGNTAITQYIIQYK-SSEEMWPTQPLKIIV-------PGSQTSATLQPLLPATQYQV 129
P SG Y + + E P + V ++TS T+ L P Y
Sbjct: 356 PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTF 415
Query: 130 RLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV 189
+ A N + T + +++ P +V + T L + W PP +
Sbjct: 416 TVEARNGVSGLVTSRSFRTASVSINQ-TEPPKVRLEG--RSTTSLSVSWSIPPPQ--QSR 470
Query: 190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG 249
+ Y+V Y+ S+ SY ++ E + L P T Y + V+ G+G
Sbjct: 471 VWKYEVTYRKKGDSN----SYNVRRTE-GFSVT----LDDLAPDTTYLVQVQALTQEGQG 521
Query: 250 PFSEPFIART 259
S+ +T
Sbjct: 522 AGSKVHEFQT 531
Score = 75.6 bits (185), Expect = 1e-15
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 7/125 (5%)
Query: 32 TLSCLATNYHGTAEMTIQLLV---QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQ 88
T + A N + P +R+ S+ SL +SW+ P + + +
Sbjct: 414 TFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWK 473
Query: 89 YIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA 148
Y + Y+ + + S TL L P T Y V++ A G +
Sbjct: 474 YEVTYRKKGDSNSYN----VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEF 529
Query: 149 STLEE 153
TL
Sbjct: 530 QTLSP 534
Score = 68.7 bits (167), Expect = 2e-13
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 7/118 (5%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQ---ISSGSS 204
AS P AP +T+ V ++ ++W PP++S + Y V + SG
Sbjct: 326 ASMPCTRPPSAPHYLTA---VGMGAKVELRWT-PPQDSGGREDIVYSVTCEQCWPESGEC 381
Query: 205 LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
+ S + + L P+ Y V N V S F +
Sbjct: 382 GPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSI 439
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 129 bits (326), Expect = 5e-36
Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
+ ++ S + V R+D+G A N G + T++L V + P+ P+ +++++
Sbjct: 151 YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDV 210
Query: 68 SSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSATLQPLLPAT 125
S S+ ++WT P G + IT YI++ + + E W + +T T+ L T
Sbjct: 211 SRDSVNLTWTEPASDGGSKITNYIVEKCATTAERW-----LRVGQARETRYTVINLFGKT 265
Query: 126 QYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
YQ R++AEN G+S+ + + +E A
Sbjct: 266 SYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299
Score = 81.0 bits (200), Expect = 5e-18
Identities = 55/266 (20%), Positives = 85/266 (31%), Gaps = 44/266 (16%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------ 56
+Y I+E G +L IA+V D+ ATN G+ T L V+
Sbjct: 50 LKYRIQEF---KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106
Query: 57 --EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
E + +S P+SG I K + + ++IV S T
Sbjct: 107 TLEGMGAVHALRGEV----VSIKIPFSGKPDPV--ITWQKGQDLIDNNGHYQVIVTRSFT 160
Query: 115 SATLQPLLPAT---QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
S + Y V A+N G+ + EL + + P PR V D
Sbjct: 161 SLVFPNGVERKDAGFYVVC--AKNRFGIDQKTVEL---DVADVP-DPPR----GVKVSDV 210
Query: 172 TE--LLIKWKAPPRESWNGVLLGYDVGY-QISSGSSLALSSYTLKSVELDNQYEGELRIP 228
+ + + W P + Y V ++ L + + +Y +
Sbjct: 211 SRDSVNLTWT-EPASDGGSKITNYIVEKCATTAERWLRVGQAR------ETRYT----VI 259
Query: 229 GLTPYTKYAIVVRGYNSVGKGPFSEP 254
L T Y V N G SEP
Sbjct: 260 NLFGKTSYQFRVIAENKFGLSKPSEP 285
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 123 bits (311), Expect = 1e-34
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
S ++ S L + D G +C A N G + L+ +TP +P
Sbjct: 61 SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 120
Query: 63 RITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSATLQP 120
++ E S + Q+ + P +G I +Y ++++ EE+W ++ + T+
Sbjct: 121 QV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVG 179
Query: 121 LLPATQYQVRLLAENPLGMSETGAELQAST 150
L P T Y VRL A N G+ E A + T
Sbjct: 180 LKPETTYAVRLAALNGKGLGEISAASEFKT 209
Score = 61.0 bits (148), Expect = 2e-11
Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 34/236 (14%)
Query: 31 GTLSCLATNYHGTAEMTIQLLVQETPE--APKNIRITEESSRSLQISWTAPYSGNTAITQ 88
T + ++ P+ P + E + ++ + T
Sbjct: 1 ATYAAASSALVPRGS------HMYAPKLQGPVAVYTWEGNQVNITC----EVFAYPSAT- 49
Query: 89 YIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT-----QYQVRLLAENPLGMSETG 143
I ++ + + + I + + +++ L+ + P + Y A N +G
Sbjct: 50 -ISWFRDGQLLPSSNYSNIKIYNTPSASYLE-VTPDSENDFGNYNCT--AVNRIGQESLE 105
Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS 203
L + +P+ E S +++ P +L Y ++
Sbjct: 106 FILVQADTPSSPSIDQVEPYSS-------TAQVQFDEPEATG-GVPILKYKAEWRAVGEE 157
Query: 204 SLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
Y K ++ I GL P T YA+ + N G G S +T
Sbjct: 158 VWHSKWYDAKEASMEGIV----TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 122 bits (309), Expect = 1e-33
Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 23/215 (10%)
Query: 36 LATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS 95
+A ++H + L AP +++ T+ + SL WT P N +T Y ++
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTP 57
Query: 96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
E+ P + I + +S + L+ AT+Y+V + A S + + +P
Sbjct: 58 KEKTGPMKE--INLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP 115
Query: 156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV 215
PR T + I W+ + G+ V ++G T
Sbjct: 116 ---PRRARVTD--ATETTITISWRTK-----TETITGFQVDAVPANGQ-------TPIQR 158
Query: 216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
+ I GL P T Y I + N +
Sbjct: 159 TIKPDVR-SYTITGLQPGTDYKIYLYTLNDNARSS 192
Score = 107 bits (268), Expect = 1e-27
Identities = 42/215 (19%), Positives = 67/215 (31%), Gaps = 26/215 (12%)
Query: 37 ATNYHGTAEMTIQLLVQET-PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS 95
A T+ ++ P+ R+T+ + ++ ISW IT + +
Sbjct: 93 ALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTK---TETITGFQVDAVP 149
Query: 96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+ P Q + S T+ L P T Y++ L N S
Sbjct: 150 ANGQTPIQ---RTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSS-----PVVIDASTA 201
Query: 156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV 215
AP + P LL+ W+ P + GY + Y+ + V
Sbjct: 202 IDAPSNLRFLA--TTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPRPGV 254
Query: 216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
E I GL P T+Y I V + K
Sbjct: 255 T-------EATITGLEPGTEYTIYVIALKNNQKSE 282
Score = 59.0 bits (143), Expect = 2e-10
Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 18/128 (14%)
Query: 132 LAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLL 191
+A + S L+ A AP ++ V PT L +W P N L
Sbjct: 1 MAHHHHHHSSG---LEVLFQGPAI-PAPTDLKFTQ--VTPTSLSAQWTPP-----NVQLT 49
Query: 192 GYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF 251
GY V + +K + L + + GL TKY + V
Sbjct: 50 GYRVRVTPKEKTG------PMKEINLAPD-SSSVVVSGLMVATKYEVSVYALKDTLTSRP 102
Query: 252 SEPFIART 259
++ +
Sbjct: 103 AQGVVTTL 110
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 120 bits (303), Expect = 3e-32
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 22/199 (11%)
Query: 56 PEAPKNIRITEES-SRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
P N+ + + L +SW + + IT Y I + L+ +V Q+
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNG-QQGNSLEEVVHADQS 58
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
S T L P +Y V + S + + + P P ++ + P +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIPAVP--PPTDLRFTN--IGPDTM 111
Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
+ W PP + L + V Y + + + + + + L P T
Sbjct: 112 RVTWAPPP----SIDLTNFLVRYSPVKNEE------DVAELSISPS-DNAVVLTNLLPGT 160
Query: 235 KYAIVVRGYNSVGKGPFSE 253
+Y + V +
Sbjct: 161 EYVVSVSSVYEQHESTPLR 179
Score = 117 bits (294), Expect = 6e-31
Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 24/212 (11%)
Query: 48 IQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI 107
++ + ++P I ++ ++ S + W AP IT Y I++ +P +
Sbjct: 178 LRGRQKTGLDSPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHF--SGRPRED 232
Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG 167
VP S+ S TL L P T+Y V ++A N S + + PR++
Sbjct: 233 RVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL-----LIGQQSTVSDVPRDLEVVA- 286
Query: 168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI 227
PT LLI W AP + Y + Y + G+S S I
Sbjct: 287 -ATPTSLLISWDAP-----AVTVRYYRITYGETGGNSPVQEFTVPGSKS-------TATI 333
Query: 228 PGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
GL P Y I V G P S I+
Sbjct: 334 SGLKPGVDYTITVYAVTGRGDSPASSKPISIN 365
Score = 115 bits (289), Expect = 3e-30
Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 24/217 (11%)
Query: 37 ATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS 96
+ I + P ++R T +++++W P S + +T ++++Y
Sbjct: 77 TVKDDKESV-PISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPSID--LTNFLVRYSPV 133
Query: 97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN 156
+ ++ + S + L LLP T+Y V + + S ++
Sbjct: 134 KNEEDVA--ELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP-----LRGRQKTGL 186
Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
+P + + + W AP + GY + + S S
Sbjct: 187 DSPTGIDFSD--ITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVPHS-- 237
Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+ + LTP T+Y + + N + P
Sbjct: 238 -----RNSITLTNLTPGTEYVVSIVALNGREESPLLI 269
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 120 bits (303), Expect = 4e-32
Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 22/205 (10%)
Query: 56 PEAPKNIRITEESSRS-LQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
P N+ + L +SW + + IT Y I + L+ +V Q+
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNG-QQGNSLEEVVHADQS 59
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
S T L P +Y V + S + + + E P +++ + + +
Sbjct: 60 SCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIPEVP--QLTDLSFVD--ITDSSI 112
Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
++W + ++GY + + + S G + GL P
Sbjct: 113 GLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVDSS-------VGYYTVTGLEPGI 161
Query: 235 KYAIVVRGYNSVGKGPFSEPFIART 259
Y I V + G+ +
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTA 186
Score = 112 bits (281), Expect = 5e-29
Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 23/202 (11%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
Q P ++R T +++++W P S + +T ++++Y + ++ +
Sbjct: 183 QQTAVPPPTDLRFTNIGPDTMRVTWAPPPSID--LTNFLVRYSPVKNEEDVA--ELSISP 238
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
S + L LLP T+Y V + + S ++ +P + +
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHEST-----PLRGRQKTGLDSPTGIDFSD--ITA 291
Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
+ W AP + GY + + S + + LT
Sbjct: 292 NSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRV-------PHSRNSITLTNLT 339
Query: 232 PYTKYAIVVRGYNSVGKGPFSE 253
P T+Y + + N + P
Sbjct: 340 PGTEYVVSIVALNGREESPLLI 361
Score = 111 bits (280), Expect = 7e-29
Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 23/222 (10%)
Query: 32 TLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYII 91
+S + I + ++ + + S+ + WT S I Y I
Sbjct: 73 NVSVYTVKDDKESV-PISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSST--IIGYRI 129
Query: 92 QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
++ E P + V S T+ L P Y + ++ G S +
Sbjct: 130 TVVAAGEGIPIF--EDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAP-----TTLT 182
Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
++ P ++ + P + + W PP + L + V Y + +
Sbjct: 183 QQTAVPPPTDLRFTN--IGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDV-AELS 235
Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+ + + + L P T+Y + V +
Sbjct: 236 ISPSDN------AVVLTNLLPGTEYVVSVSSVYEQHESTPLR 271
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 117 bits (296), Expect = 8e-32
Identities = 43/254 (16%), Positives = 86/254 (33%), Gaps = 21/254 (8%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT---AEMTIQLLVQETPEAPK 60
T + L++ ++ + L D + N G A +TI +
Sbjct: 47 TLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVM 106
Query: 61 NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP 120
+++ L + WT P ++ +YI+++ + P G+ L+
Sbjct: 107 DLK-AFPKDNMLWVEWTTP---RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRG 162
Query: 121 -LLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWK 179
L + Y + + G ++A + P+ P T G E +++W
Sbjct: 163 NLAESKCYLITVTPVYADGPGSP-ESIKAYLKQAPPSKGPTVRTKKVG---KNEAVLEWD 218
Query: 180 APPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIV 239
P + NG + Y + Y+ G+ ++ + S E + LT T Y +
Sbjct: 219 QLPVDVQNGFIRNYTIFYRTIIGNE---TAVNVDSSHT------EYTLSSLTSDTLYMVR 269
Query: 240 VRGYNSVGKGPFSE 253
+ Y G E
Sbjct: 270 MAAYTDEGGKDGPE 283
Score = 106 bits (266), Expect = 2e-27
Identities = 33/213 (15%), Positives = 61/213 (28%), Gaps = 28/213 (13%)
Query: 56 PEAPKNIRITEE----SSRSLQISWTA--PYSGNTAITQYIIQYKSSEEMWPTQPLKIIV 109
+AP + R++Q+ W P+ N I Y + + V
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYT----V 60
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV 169
++ + L +Y L N +G S+ A L + ++ + P
Sbjct: 61 NATKLTVN----LTNDRYLATLTVRNLVGKSDA-AVLTIPACDFQATHPVMDLKAFPK-- 113
Query: 170 DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG 229
L ++W P + Y + + + S + + D
Sbjct: 114 -DNMLWVEWTTP-----RESVKKYILEWCVLSDK----APCITDWQQEDGTVHRTYLRGN 163
Query: 230 LTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
L Y I V + G G E A +
Sbjct: 164 LAESKCYLITVTPVYADGPGS-PESIKAYLKQA 195
Score = 55.6 bits (134), Expect = 3e-09
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 152 EEAPNGAP---REVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
E+ P+ AP ++ + + WK P NG +L Y+V
Sbjct: 1 EDRPSKAPSFWYKIDPSH-TQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL---Q 56
Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+YT+ + +L +Y + N VGK +
Sbjct: 57 NYTVNATKLT----------VNLTNDRYLATLTVRNLVGKSDAAV 91
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 112 bits (282), Expect = 1e-30
Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 22/198 (11%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
P ++ + + S+ + WT ++ I Y I ++ E P + V S
Sbjct: 20 HMEVPQPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPIF--EDFVDSS 75
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
T+ L P Y + + G S + ++ P ++ + P
Sbjct: 76 VGYYTVTGLEPGIDYDISVYTVKNGGESTP-----TTLTQQTAVPPPTDLRFTN--IGPD 128
Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
+ + W PP + L + V Y + + + + + + L P
Sbjct: 129 TMRVTWAPPP----SIDLTNFLVRYSPVKNEE------DVAELSISP-SDNAVVLTNLLP 177
Query: 233 YTKYAIVVRGYNSVGKGP 250
T+Y + V +
Sbjct: 178 GTEYVVSVSSVYEQHEST 195
Score = 74.1 bits (182), Expect = 3e-16
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
Q P ++R T +++++W P S + +T ++++Y + L +
Sbjct: 110 QQTAVPPPTDLRFTNIGPDTMRVTWAPPPSID--LTNFLVRYSPVKNEEDVAELS--ISP 165
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSE 141
S + L LLP T+Y V + + S
Sbjct: 166 SDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195
Score = 47.1 bits (112), Expect = 1e-06
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
+ E P P +++ + + + ++W + ++GY + +
Sbjct: 19 SHMEVP--QPTDLSFVD--ITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFED 70
Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+ S G + GL P Y I V + G+ +
Sbjct: 71 FVDSS-------VGYYTVTGLEPGIDYDISVYTVKNGGESTPTT 107
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 108 bits (272), Expect = 5e-30
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 47 TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK 106
V + P P ++ +T++ +S+Q+SWT N+ IT++II+Y+ + +
Sbjct: 8 PTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQ 67
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGAPREV 162
V G+QT+A L L P Y R++A N +G S + A Q T P+ P
Sbjct: 68 TEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSG 123
Score = 35.0 bits (81), Expect = 0.006
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
L+PY Y+ V NS+GK SE
Sbjct: 78 QLNLSPYVNYSFRVMAVNSIGKSLPSEA 105
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 112 bits (283), Expect = 5e-30
Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 23/207 (11%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
+ P I + + S + WT P + +++Y +
Sbjct: 12 IPVIDGPTQILVRDVSDTVAFVEWTPP---RAKVDFILLKYGLVGGEGGKTT--FRLQPP 66
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
+ ++Q L P ++Y+V + A S+ +ST AP+ + T
Sbjct: 67 LSQYSVQALRPGSRYEVSISAVRGTNESDA-----SSTQFTTEIDAPKNLRVGS--RTAT 119
Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
L ++W Y V Y +G Y V + + L P
Sbjct: 120 SLDLEWDNSE-----AEAQEYKVVYSTLAG-----EQYHEVLVPKGIGPTTKTTLTDLVP 169
Query: 233 YTKYAIVVRGYNSVGKGPFSEPFIART 259
T+Y + + + + ART
Sbjct: 170 GTEYGVGISAVMNSKQSI-PATMNART 195
Score = 95.6 bits (238), Expect = 2e-23
Identities = 41/198 (20%), Positives = 69/198 (34%), Gaps = 24/198 (12%)
Query: 55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
+APKN+R+ ++ SL + W +Y + Y + + L G T
Sbjct: 104 EIDAPKNLRVGSRTATSLDLEWDNS---EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTT 160
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
TL L+P T+Y V + A S A + A T +PR++ T +
Sbjct: 161 KTTLTDLVPGTEYGVGISAVMNSKQSIP-ATMNARTEL----DSPRDLMVTA--SSETSI 213
Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
+ W +G + Y + + SSG S V + + L P
Sbjct: 214 SLIWTKA-----SGPIDHYRITFTPSSGIS--------SEVTVPRD-RTSYTLTDLEPGA 259
Query: 235 KYAIVVRGYNSVGKGPFS 252
+Y I + + S
Sbjct: 260 EYIISITAERGRQQSLES 277
Score = 71.4 bits (175), Expect = 1e-14
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
+ ++P+++ +T S S+ + WT + I Y I + S + + VP
Sbjct: 193 ARTELDSPRDLMVTASSETSISLIWTKA---SGPIDHYRITFTPSSGISSE----VTVPR 245
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
+TS TL L P +Y + + AE S + + A T
Sbjct: 246 DRTSYTLTDLEPGAEYIISITAERGRQQSLE-STVDAFT 283
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 113 bits (283), Expect = 8e-30
Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 17/243 (6%)
Query: 15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQI 74
GM L + +V DSG SC G T+ LLV PE P+ + ++
Sbjct: 57 GMGRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVC 113
Query: 75 SWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI----IVPGSQTSATLQPLLPATQYQVR 130
W + + T+ ++ + + + + P ++ Y V
Sbjct: 114 EWGPRSTPS-LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVS 172
Query: 131 LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVL 190
+ + +G + P +T +P L + W+ P + +
Sbjct: 173 MCVASSVGSKFS-KTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYR 231
Query: 191 LGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
L +++ Y+ + + + + I ++ + +R G+G
Sbjct: 232 LRFELRYRAERSKT--------FTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGE 283
Query: 251 FSE 253
+SE
Sbjct: 284 WSE 286
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 107 bits (268), Expect = 2e-29
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS 203
ST E AP+G P +VT P V + + WKAP +E NGV+ GY +GY+ +S
Sbjct: 4 GSSGISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 204 SLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
S S D++ + L + +Y +VV+ +N G GP S A T E
Sbjct: 62 SNGQYSIVEMKATGDSE---VYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLES 117
Score = 68.9 bits (169), Expect = 5e-15
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 53 QETP-EAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYK--SSEEMWPTQPLKI 107
+ P P ++ + +S+S+Q++W AP N I Y I Y+ S +++
Sbjct: 12 EAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEM 71
Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGA 158
G TL L QY V + A N G + +E+ A+TLE P+
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSSG 122
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 106 bits (266), Expect = 4e-29
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 42 GTAEMTIQLLVQETPEAPKN--IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM 99
G++ + L V++ P AP++ ++ R++ ++WT P+ GN+ + +YI++ +
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAP 63
Query: 100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
W V TS T++ L+PA YQ RL A N +G + + + +L E+
Sbjct: 64 WTVLLAS--VDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESG 117
Score = 38.5 bits (90), Expect = 3e-04
Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S A L+ L AP +++ V+ + + W P N L+ Y +
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLST----VERRAINLTWTKPF--DGNSPLIRYILEM 57
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
++ L + + GL P Y + N VGKG FS+
Sbjct: 58 SENNAPWTVLLASVDPK---ATSVT----VKGLVPARSYQFRLCAVNDVGKGQFSKD 107
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 104 bits (262), Expect = 2e-28
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + ++A T + P+ P++V + T + + W PP +S NGV+ Y V Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVS--MGSTTVRVSWVPPPADSRNGVITQYSVAY 58
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ G + + + ++ + GL +T+Y + VR + VG GP S P +
Sbjct: 59 EAVDGEDR--GRHVVDGISREHS---SWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLV 113
Query: 258 RTNEG 262
RT+E
Sbjct: 114 RTDED 118
Score = 78.2 bits (193), Expect = 2e-18
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 53 QETPE-APKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIV 109
Q TP P+ + S ++++SW P + N ITQY + Y++ + + + +
Sbjct: 15 QSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGI 74
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
+S L L T+Y+V + A +G + + T E+ P+G PR+V S P
Sbjct: 75 SREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGP 131
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 103 bits (260), Expect = 3e-28
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 128 QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWN 187
+ N G + ++ TL + P+ P+ V+ + VV+ + + W PP + N
Sbjct: 3 SGS--SGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLE--VVNSRSIKVSWLPPPSGTQN 58
Query: 188 GVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG 247
G + GY + ++ ++ ++++E +N GL ++Y+ V G
Sbjct: 59 GFITGYKIRHRKTT------RRGEMETLEPNNL---WYLFTGLEKGSQYSFQVSAMTVNG 109
Query: 248 KGPFSEPFIARTNE 261
GP S + A T E
Sbjct: 110 TGPPSNWYTAETPE 123
Score = 65.8 bits (161), Expect = 8e-14
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Query: 34 SCLATNYHGTAEMTIQLLVQETPE-----APKNIRITEESSRSLQISWTAPYSG--NTAI 86
S + N +G T + V T P+N+ + +SRS+++SW P SG N I
Sbjct: 3 SGSSGNRYGPGVSTDDITVV-TLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 87 TQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAEL 146
T Y I+++ + + + + L +QY ++ A G
Sbjct: 62 TGYKIRHRKTTRRGEME----TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY 117
Query: 147 QASTLE 152
A T E
Sbjct: 118 TAETPE 123
Score = 36.9 bits (86), Expect = 0.001
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 237 AIVVRGYNSVGKGPFSEPFIARTNEG 262
N G G ++ T
Sbjct: 1 GSSGSSGNRYGPGVSTDDITVVTLSD 26
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 103 bits (258), Expect = 6e-28
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
+ E+ P AP V + V+ T + W P +S G L GY + Y + SS
Sbjct: 9 SGEDLPMVAPGNVRVNV--VNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRR 66
Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
+ K + + +PGL P++ Y + VR N G+GP S + T EG
Sbjct: 67 HIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119
Score = 62.4 bits (152), Expect = 1e-12
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 57 EAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYK----SSEEMWPTQPLKII-V 109
AP N+R+ +S ++ W S + Y I Y SS+ KI+
Sbjct: 16 VAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTF 75
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
GS+T L L P + Y + + N G + +T E +
Sbjct: 76 QGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 107 bits (267), Expect = 1e-27
Identities = 43/259 (16%), Positives = 87/259 (33%), Gaps = 16/259 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSC--LATNYHGTAEMTIQLLVQETPEAPKNIRIT 65
+EQ + + + L+C L I ++ PE PKN+
Sbjct: 54 KEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCI 113
Query: 66 EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT 125
+ ++ W + T + ++ + + + K P S T +
Sbjct: 114 VNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCT--VDYSTVYFV 170
Query: 126 QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES 185
+V + AEN LG + + + + P ++ + L + W P
Sbjct: 171 NIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS--I 227
Query: 186 WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS 245
+ ++L Y++ Y+ S+ ++ E + L P+T+Y +R
Sbjct: 228 KSVIILKYNIQYRTKDAST-----WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKE 282
Query: 246 VGKGPFSE---PFIARTNE 261
GKG +S+ T E
Sbjct: 283 DGKGYWSDWSEEASGITYE 301
Score = 69.9 bits (170), Expect = 4e-14
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 37 ATNYHGTA---EMTIQLLVQETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYII 91
A N G + + + P P N+ + EE S L+++WT P + I +Y I
Sbjct: 178 AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI 237
Query: 92 QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG---MSETGAELQA 148
QY++ + +Q +++S T+Q L P T+Y R+ G S+ E
Sbjct: 238 QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297
Query: 149 STLEE 153
T E+
Sbjct: 298 ITYED 302
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 104 bits (260), Expect = 1e-27
Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 27/196 (13%)
Query: 55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
+ PK++ +++ + +L + W P +Y + Y S + +P T
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRP---VAKFDRYRLTYVSPSGKKNE----MEIPVDST 58
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
S L+ L T+Y + L+AE S+ + G+P+ ++ +
Sbjct: 59 SFILRGLDAGTEYTISLVAEKGRHKSKP-----TTIKGSTVVGSPKGISFSD--ITENSA 111
Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
+ W P + Y V Y +G T V +D + ++ L P
Sbjct: 112 TVSWTPPR-----SRVDSYRVSYVPITGG-------TPNVVTVDGS-KTRTKLVKLVPGV 158
Query: 235 KYAIVVRGYNSVGKGP 250
Y + + +
Sbjct: 159 DYNVNIISVKGFEESE 174
Score = 75.2 bits (185), Expect = 1e-16
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
+PK I ++ + S +SWT P + + Y + Y P + V G
Sbjct: 91 GSTVVGSPKGISFSDITENSATVSWTPP---RSRVDSYRVSYVPITGGTPNV---VTVDG 144
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
S+T L L+P Y V +++ SE T ++
Sbjct: 145 SKTRTKLVKLVPGVDYNVNIISVKGFEESEP-ISGILKTALDS 186
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 100 bits (252), Expect = 2e-27
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P+G P+ + + + + W P NG ++ Y V ++ +
Sbjct: 1 GSSGSSGPSGFPQNLHVTG--LTTSTTELAWDPPVLAERNGRIISYTVVFRDIN------ 52
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
S L+++ D ++ + GL P T Y I VR + S G GP S +RT
Sbjct: 53 SQQELQNITTDTRF----TLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 61.2 bits (149), Expect = 2e-12
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 53 QETP-EAPKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIV 109
P P+N+ +T ++ + +++W P N I Y + ++ Q
Sbjct: 5 SSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQ-----N 59
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
+ T TL L P T Y +++ A G +Q+ T+
Sbjct: 60 ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 101 bits (253), Expect = 3e-27
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + ++ TL + P+ AP+ ++ + + ++I W+ P + NG + GY + Y
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEV--RNSKSIMIHWQPPAPATQNGQITGYKIRY 58
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ + ++ + +L I GL T+Y V G GP ++ A
Sbjct: 59 R-KASRKSDVTETLVSGTQL------SQLIEGLDRGTEYNFRVAALTINGTGPATDWLSA 111
Query: 258 RTNEGD 263
T E D
Sbjct: 112 ETFESD 117
Score = 68.5 bits (168), Expect = 8e-15
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
AP+N+ + +S+S+ I W P N IT Y I+Y+ + + +V G+Q
Sbjct: 20 AAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVT--ETLVSGTQL 77
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
S ++ L T+Y R+ A G L A T E +
Sbjct: 78 SQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 122
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 98.3 bits (245), Expect = 3e-26
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
S+ P P +D V+ T +++KW P + N + G+ + Y+ + S S
Sbjct: 2 SSGSSGPVAGPYITFTDA--VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTD--SDNDS 57
Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD 263
Y VE D I L P T Y I ++ +N G+ FS I T
Sbjct: 58 DYKKDMVEGDRY---WHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARS 109
Score = 77.1 bits (190), Expect = 3e-18
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 56 PEAPKNIRITEESSRSLQISWTA--PYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
P + ++ + W + NT I + I Y+ ++ + K +V G +
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGA 158
++ L P T Y +++ N G SE + T + +
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 97.9 bits (244), Expect = 4e-26
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 42 GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP 101
G++ I + P+ P RI + SL + W AP + I +++++ +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE 63
Query: 102 TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
GSQ + L PA + RL A N G S E+ T +
Sbjct: 64 FCQ---CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
Score = 42.0 bits (99), Expect = 2e-05
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTE--LLIKWKAPPRESWNGVLLGYDV 195
G S + +TL P P + P + + T+ L ++WKAP + + +
Sbjct: 1 GSSGSSGAEIFTTLSCEP-DIP----NPPRIANRTKNSLTLQWKAP--SDNGSKIQNFVL 53
Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF 255
+ G+ Y Q++ I L+P + N G FSE
Sbjct: 54 EWDEGKGNGEFCQCYMGS----QKQFK----ITKLSPAMGCKFRLSARNDYGTSGFSEEV 105
Query: 256 IART 259
+ T
Sbjct: 106 LYYT 109
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 100 bits (249), Expect = 7e-26
Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 28/217 (12%)
Query: 55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
+ I T S I W AP + I++YI++++ + + + +PG
Sbjct: 1 SGPVEVFITETPSQPNSHPIQWNAPQPSH--ISKYILRWRPKNSVGRWK--EATIPGHLN 56
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGV------ 168
S T++ L P Y+ +L++ G E +T P +
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVAT 116
Query: 169 ------VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYE 222
+ + ++ W + + G+ V Y++S + ++L +
Sbjct: 117 SESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGD------EPQYLDLPST-A 164
Query: 223 GELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
+ IP L P KY + V + G+ T
Sbjct: 165 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 68.9 bits (168), Expect = 3e-14
Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 43 TAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT 102
T+ +P + +TE ++ S +SW + + ++ + ++Y+ SEE
Sbjct: 99 TSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSEEGDEP 155
Query: 103 QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
Q + +P + TS + LLP +Y V + + G +T
Sbjct: 156 Q--YLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 42.0 bits (98), Expect = 7e-05
Identities = 17/106 (16%), Positives = 27/106 (25%), Gaps = 11/106 (10%)
Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
P EV P I+W AP + Y + ++ + K +
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVG------RWKEATI 51
Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD 263
I GL P Y + G + T+
Sbjct: 52 PGH-LNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTST 96
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 103 bits (258), Expect = 2e-25
Identities = 37/254 (14%), Positives = 70/254 (27%), Gaps = 18/254 (7%)
Query: 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ 73
DG + I N+ S + + P+ P+ + + +
Sbjct: 242 DGENVAIKIRNISVSASSGTNV--VFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEII 299
Query: 74 ISWTAP---YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR 130
SW T Y + S + + Q L Y
Sbjct: 300 CSWNPGRVTALVGPRATSYTLVESFSGK-YVRLKRAEAPTNESYQLLFQMLPNQEIYNFT 358
Query: 131 LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVL 190
L A NPLG S++ + + E+ P ++ T + + W P +
Sbjct: 359 LNAHNPLGRSQS--TILVNITEKVYPHTPTSFKVKD--INSTAVKLSWHLPGNFAKIN-- 412
Query: 191 LGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRG--YNSVGK 248
++ + S+ +++ + + L PYT Y +R
Sbjct: 413 FLCEIEIKKSNSV----QEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKW 468
Query: 249 GPFSEPFIARTNEG 262
+S T E
Sbjct: 469 SKWSNKKQHLTTEA 482
Score = 74.9 bits (183), Expect = 2e-15
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 32 TLSCLATNYHGTAEMTIQLLVQET--PEAPKNIRITEESSRSLQISWTAPYSGNTAITQY 89
+ A N G ++ TI + + E P P + ++ + +S ++++SW P +
Sbjct: 356 NFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLC 415
Query: 90 IIQYKSSEEMWPTQPLKII-VPGSQTSATLQPLLPATQY--QVRLLAENPLGMSETGAEL 146
I+ K S + + + I V S L L P T Y ++R E S+ +
Sbjct: 416 EIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKK 475
Query: 147 QASTLEEA 154
Q T E +
Sbjct: 476 QHLTTEAS 483
Score = 52.5 bits (125), Expect = 5e-08
Identities = 21/191 (10%), Positives = 53/191 (27%), Gaps = 13/191 (6%)
Query: 61 NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP 120
+++ + + Q SW AP + + S + + I +P
Sbjct: 1 DLKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQRSRSCYQLEKTSIKIPALSH------ 54
Query: 121 LLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKA 180
Y++ + + + G S + L + P P + + L +KW
Sbjct: 55 ----GDYEITINSLHDFGSSTSKFTLNEQNVSLIP-DTPEILQLSA-DFSTSTLYLKWND 108
Query: 181 PPRESWNGVLLGYDVGYQISSGSS-LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIV 239
+ + +++ + L ++ D + + +
Sbjct: 109 RGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVE 168
Query: 240 VRGYNSVGKGP 250
+R Y
Sbjct: 169 IRCYIDNLHFS 179
Score = 34.0 bits (77), Expect = 0.048
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 10/125 (8%)
Query: 52 VQETPEAPKNIRITEESSRS-LQISWTAPYSG--NTAITQYIIQYKSSEEM------WPT 102
V P+ P+ ++++ + S S L + W S + + + I+ E M
Sbjct: 81 VSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQ 140
Query: 103 QPLKIIVPGSQTSATLQPLLPATQYQVRLLAE-NPLGMSETGAELQASTLEEAPNGAPRE 161
L S L + V + + L S S +++ +
Sbjct: 141 TTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQ 200
Query: 162 VTSDP 166
P
Sbjct: 201 TKVFP 205
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 96.4 bits (240), Expect = 2e-25
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 7/126 (5%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + + AST E AP+ AP VT + I+W PP + +G L+GY + +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNE-SSDNVDIRWMKPPTKQQDGELVGYRISH 59
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
S S L+ V + RI + + G GPFS+P
Sbjct: 60 VWQSAGI---SKELLEEVGQNGS---RARISVQVHNATCTVRIAAVTRGGVGPFSDPVKI 113
Query: 258 RTNEGD 263
Sbjct: 114 FIPAHS 119
Score = 55.6 bits (134), Expect = 4e-10
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 55 TPE-----APKNIRITE-ESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLK 106
T E AP N+ + ESS ++ I W P + + + Y I + ++ L
Sbjct: 13 TTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSA-GISKELL 71
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
V + + A + + VR+ A G+ ++ +
Sbjct: 72 EEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSG 120
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 94.7 bits (236), Expect = 6e-25
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P+ K ++T S+ Q++W P S T +T+Y +++ E +I G S
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSM-----QICYCGPGLS 62
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGA 158
++ L PAT Y R+ A + +G + T + +
Sbjct: 63 YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSGPSS 105
Score = 51.5 bits (124), Expect = 6e-09
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 14/110 (12%)
Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
+ + + T + W+ P + Y + + GS
Sbjct: 2 SSGSSGPDQCKPPQV--TCRSATCAQVNWEVPLSN--GTDVTEYRLEWGGVEGSMQICYC 57
Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
S E+ GL+P T Y V+ + VG GPFSE T
Sbjct: 58 GPGLSYEIK----------GLSPATTYYCRVQALSVVGAGPFSEVVACVT 97
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 94.4 bits (235), Expect = 1e-24
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 42 GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEM 99
G++ +I + + + P P+ ++I + ++ ++WT P GN AIT Y IQ
Sbjct: 4 GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Query: 100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
W +I +TSAT+ L+ +Y R+ +EN G+SE + S +
Sbjct: 64 W----FTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARD 115
Score = 37.3 bits (87), Expect = 8e-04
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 157 GAPREVTSDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
G P + D + + W PP++ N + GY + +T+
Sbjct: 19 GPP----QIVKIEDVWGENVALTWT-PPKDDGNAAITGYTIQKADKKSME----WFTVIE 69
Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
I L +Y V N G +
Sbjct: 70 HYHRTSA----TITELVIGNEYYFRVFSENMCGLSEDATM 105
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 96.2 bits (239), Expect = 3e-24
Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 14/209 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
PE PKN+ + ++ W + T + ++ + + + K +
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAK--RDTPTSC 64
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL 175
+ +V + AEN LG + + + + P ++ + L
Sbjct: 65 TVDYSTVYFVNIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEELSSILK 123
Query: 176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK 235
+ W P + ++L Y++ Y+ S+ ++ E + L P+T+
Sbjct: 124 LTWTNPS--IKSVIILKYNIQYRTKDAST-----WSQIPPEDTASTRSSFTVQDLKPFTE 176
Query: 236 YAIVVRGYNSVGKGPFSE---PFIARTNE 261
Y +R GKG +S+ T E
Sbjct: 177 YVFRIRCMKEDGKGYWSDWSEEASGITYE 205
Score = 80.4 bits (198), Expect = 2e-18
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 37 ATNYHGTAE---MTIQLLVQETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYII 91
A N G + + + P P N+ + EE S L+++WT P + I +Y I
Sbjct: 82 AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI 141
Query: 92 QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQA 148
QY++ + +Q +++S T+Q L P T+Y R+ G S+ E
Sbjct: 142 QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 201
Query: 149 STLEEAPNGAP 159
T E+ P+ P
Sbjct: 202 ITYEDRPSKEP 212
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 93.2 bits (232), Expect = 3e-24
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + ++ ++AP+ AP EV + +E+ + W+ ++ Y + Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKV--LSSSEISVHWEHVL----EKIVESYQIRY 54
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ A + + S E R+ L P T+Y I V NS G GP S+ A
Sbjct: 55 WAAHDKEEAANRVQVTSQEY------SARLENLLPDTQYFIEVGACNSAGCGPPSDMIEA 108
Query: 258 RTNEGD 263
T +
Sbjct: 109 FTKKAS 114
Score = 68.5 bits (168), Expect = 6e-15
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
EAP + + SS + + W + Y I+Y ++ + ++ V + SA
Sbjct: 20 EAPTEVGVKVLSSSEISVHWEHVLEKI--VESYQIRYWAAHD-KEEAANRVQVTSQEYSA 76
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
L+ LLP TQY + + A N G ++A T + +
Sbjct: 77 RLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 92.0 bits (229), Expect = 1e-23
Identities = 25/100 (25%), Positives = 43/100 (43%)
Query: 42 GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP 101
G++ PEAP I+ S S+ ++W +G I + ++YK +++
Sbjct: 4 GSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGD 63
Query: 102 TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
+P S+ S + L Y+ R+ A N LG SE
Sbjct: 64 WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESE 103
Score = 34.3 bits (79), Expect = 0.009
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 14/119 (11%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTE--LLIKWKAPPRESWNGVLLGYDV 195
G S + P AP P + +E + + W PR + + + V
Sbjct: 1 GSSGSSGSQPDHGRLSPP-EAP----DRPTISTASETSVYVTWI--PRGNGGFPIQSFRV 53
Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
Y+ S ++ + I GL Y VR N +G+ S P
Sbjct: 54 EYKKLKKVG---DWILATSAIPPSRLS--VEITGLEKGISYKFRVRALNMLGESEPSAP 107
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 90.5 bits (225), Expect = 3e-23
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + + T E+AP+ APR+V + + T +L++WK P NG + GY V Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARM--LSSTTILVQWKEPEE--PNGQIQGYRVYY 56
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ ++++ +V I L P Y++ V + S+G GP S
Sbjct: 57 T--MDPTQHVNNWMKHNVADSQITT----IGNLVPQKTYSVKVLAFTSIGDGPLSSDIQV 110
Query: 258 RTNEG 262
T G
Sbjct: 111 ITQTG 115
Score = 69.4 bits (170), Expect = 3e-15
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
AP++++ SS ++ + W P N I Y + Y
Sbjct: 20 SAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPT-QHVNNWMKHNVADSQIT 78
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
T+ L+P Y V++LA +G +++Q T +
Sbjct: 79 TIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 89.7 bits (223), Expect = 4e-23
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
P P ++ V T++++KW P + N + G+ + Y+ S S Y
Sbjct: 3 TPITGPHIAYTEA--VSDTQIMLKWTYIPSSNNNTPIQGFYIYYR--PTDSDNDSDYKRD 58
Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
VE Q I L P T Y I ++ +N G+ FS I T
Sbjct: 59 VVEGSKQ---WHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 72.8 bits (179), Expect = 1e-16
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 58 APKNIRITEESSRSLQISWTAP--YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P S + + WT + NT I + I Y+ ++ + + +V GS+
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
+ L P T Y +++ N G SE + T
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 90.2 bits (224), Expect = 4e-23
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVP 110
P +P ++ E S + Q+ + P +G I +Y ++++ EE+W ++
Sbjct: 5 SSGPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63
Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG 167
+ T+ L P T Y VRL A N G+ E A + T AP+ S P
Sbjct: 64 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSGPS 120
Score = 51.7 bits (124), Expect = 8e-09
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P +P +P + +++ P + +L Y ++
Sbjct: 1 GSSGSSGP-SSPSIDQVEPY---SSTAQVQFD-EPEATGGVPILKYKAEWRAVGEEVWHS 55
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
Y K ++ I GL P T YA+ + N G G S +T
Sbjct: 56 KWYDAKEASMEGIVT----IVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 89.4 bits (222), Expect = 9e-23
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 42 GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMW 100
G++ P AP+++ + S+R ++++W P S + Y + Y +E
Sbjct: 4 GSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYT--KEGI 61
Query: 101 PTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+ ++ + T+Q L+PAT Y R++A+N G E+ A L+ T E+
Sbjct: 62 ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESG 116
Score = 70.9 bits (174), Expect = 9e-16
Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 11/124 (8%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + E +T P APR+V + V + + W+ P + +G L Y V Y
Sbjct: 1 GSSGSSGEHAPATTGPLP-SAPRDVVASL--VSTRFIKLTWRTPASDP-HGDNLTYSVFY 56
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ + + E ++ I L P T Y V N G G S P
Sbjct: 57 TKEGIA-------RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRV 109
Query: 258 RTNE 261
T
Sbjct: 110 ETQP 113
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 88.9 bits (221), Expect = 2e-22
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS----EEMWPTQPLKI 107
E P P N+ I+ RS+ + + Y G T+I++++++ + E W
Sbjct: 14 PPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLS 73
Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGA 158
P + S + L P T Y R+ N +G S + + TL+ P+
Sbjct: 74 NEPDA-RSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGPSSG 124
Score = 43.9 bits (104), Expect = 4e-06
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 13/120 (10%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTE--LLIKWKAPPRESWNGVLLGYDV 195
G S + + + E P G P ++ G+ + + ++++ P + + V
Sbjct: 1 GSSGSSGTISSGVPPELP-GPP----TNLGISNIGPRSVTLQFR--PGYDGKTSISRWLV 53
Query: 196 GYQIS-SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
Q+ G S E D + + +P L P+T Y+ +R N VG P S+P
Sbjct: 54 EAQVGVVGEGEEWLLIHQLSNEPDARS---MEVPDLNPFTCYSFRMRQVNIVGTSPPSQP 110
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 87.2 bits (216), Expect = 5e-22
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
P P I S +S ++S T G I +YI++Y+S + Q L+ V G
Sbjct: 5 SMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKD--KEDQWLEKKVQG 61
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSE 141
++ L+ L Y+V++ A N LG SE
Sbjct: 62 NKDHIILEHLQWTMGYEVQITAANRLGYSE 91
Score = 38.7 bits (90), Expect = 3e-04
Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
P + + +L Y V Y+ + K V+
Sbjct: 10 SPPSIHGQP---SSGKSFKLSITKQ--DDGGAPILEYIVKYRSKDKED----QWLEKKVQ 60
Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
+ + + L Y + + N +G +
Sbjct: 61 GNKD---HIILEHLQWTMGYEVQITAANRLGYSEPTVY 95
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 87.5 bits (217), Expect = 5e-22
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
P AP+++ SSR +++SW P I + + + +
Sbjct: 14 SSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERA--LNTTQP 71
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
T+ L P Y R++A N G E+ ++ +T E+
Sbjct: 72 GSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115
Score = 65.1 bits (159), Expect = 1e-13
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 12/126 (9%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + + + P APR+V V + + W+ P G + + V +
Sbjct: 1 GSSGSSGKPAIPSSSVLP-SAPRDVVPVL--VSSRFVRLSWRPP--AEAKGNIQTFTVFF 55
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ +++ +L + L P Y V YN G G S+P
Sbjct: 56 SREGDNRE-------RALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKV 108
Query: 258 RTNEGD 263
T
Sbjct: 109 ATQPES 114
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 86.7 bits (215), Expect = 8e-22
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P AP+++T P +++ W+ P NG + Y + Y + ++ +
Sbjct: 1 GSSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEA--NGKITAYILFY--TLDKNIPI 56
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
+ ++++ D +I L T Y ++ NS G GP S+P + RT +
Sbjct: 57 DDWIMETISGDRL---THQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLK 107
Score = 81.7 bits (202), Expect = 6e-20
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 56 PEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
APK++ + E R++ +SW P N IT YI+ Y + + + + G +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDR 68
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+ + L T Y R+ A N G+ + TL+ +
Sbjct: 69 LTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 92.3 bits (228), Expect = 3e-21
Identities = 35/243 (14%), Positives = 73/243 (30%), Gaps = 14/243 (5%)
Query: 27 RQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS----G 82
R S + H +E + + + E S + ++
Sbjct: 656 RTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV 715
Query: 83 NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET 142
+ + ++ S + L T Y++ L A N E
Sbjct: 716 PRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEER 775
Query: 143 GAELQASTLEEAPNGAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDVGYQIS 200
+ + P ++ + + + W+ P + NG+++ Y+V Y+
Sbjct: 776 CSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEP--KEPNGLIVLYEVSYRRY 833
Query: 201 SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN 260
L L E R+ GL+P Y++ +R + G G ++EP
Sbjct: 834 GDEELHLCDTRKHFAL-----ERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYVT 887
Query: 261 EGD 263
+
Sbjct: 888 DYL 890
Score = 84.2 bits (207), Expect = 2e-18
Identities = 26/236 (11%), Positives = 57/236 (24%), Gaps = 45/236 (19%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNT-AITQYIIQYKSSE-------------- 97
S + + W + + + +++ YK +
Sbjct: 466 ASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACG 525
Query: 98 -------EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETG-----AE 145
++ P + ++ L P TQY + +
Sbjct: 526 SNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDI 585
Query: 146 LQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL 205
+ T P P + S +++++KWK P NG + Y V ++ + S
Sbjct: 586 IYVQTDATNP-SVPLDPISVS--NSSSQIILKWKPP--SDPNGNITHYLVFWERQAEDS- 639
Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
+ P ++ +S A
Sbjct: 640 ------------ELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECC 683
Score = 83.4 bits (205), Expect = 3e-18
Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 15/202 (7%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
P P + SS + + W P N IT Y++ ++ E L
Sbjct: 592 ATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYC---- 647
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
LP+ + +E+ +++ E A P ++ + ++ +
Sbjct: 648 ----LKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCP-KTDSQILKE---LEES 699
Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
++ G++ + ++ + L I GL
Sbjct: 700 SFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVN---KESLVISGLRH 756
Query: 233 YTKYAIVVRGYNSVGKGPFSEP 254
+T Y I ++ N
Sbjct: 757 FTGYRIELQACNQDTPEERCSV 778
Score = 62.6 bits (151), Expect = 3e-11
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 1/100 (1%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
+ + + + + W P N I Y + Y+ + +
Sbjct: 793 DDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERG 852
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
L+ L P Y VR+ A + G +
Sbjct: 853 CRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLD 891
Score = 53.4 bits (127), Expect = 3e-08
Identities = 41/264 (15%), Positives = 83/264 (31%), Gaps = 43/264 (16%)
Query: 38 TNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP------------------ 79
T +G+ + I+ E N+ + EE S L+I +
Sbjct: 334 TVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETL 393
Query: 80 YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM 139
GN + Q W L I G L + +++ ++
Sbjct: 394 EIGNYSFYALDNQNLRQLWDWSKHNL-TITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQ 452
Query: 140 SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQI 199
++ T + + + ++L++W+ P LLG+ + Y+
Sbjct: 453 ERN--DIALKTNGDQASCENELLKFSYIRTSFDKILLRWE-PYWPPDFRDLLGFMLFYKE 509
Query: 200 ----------------SSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGY 243
S+ ++ L+S + +Q + GL P+T+YAI V+
Sbjct: 510 APYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTL 569
Query: 244 NSVG-----KGPFSEPFIARTNEG 262
+ G S+ +T+
Sbjct: 570 VTFSDERRTYGAKSDIIYVQTDAT 593
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 83.2 bits (206), Expect = 1e-20
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 54 ETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPG 111
+TP +P ++ E S + Q+ + P +G I +Y ++++ EE+W ++
Sbjct: 5 DTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
+ T+ L P T Y VRL A N G+ E A + T
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 49.3 bits (118), Expect = 4e-08
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 157 GAPREVTSDPGV--VDPTE--LLIKWKAPPRESWNGV-LLGYDVGYQISSGSSLALSSYT 211
G+ + S P + V+P +++ P GV +L Y ++ Y
Sbjct: 1 GSHMDTPSSPSIDQVEPYSSTAQVQFDEPEAT--GGVPILKYKAEWRAVGEEVWHSKWYD 58
Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
K ++ I GL P T YA+ + N G G S +T
Sbjct: 59 AKEASMEGIV----TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 83.6 bits (207), Expect = 2e-20
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 42 GTAEMTIQLLVQETPEAPKNIRITEE-SSRSLQISWTAP-YSGNTAITQYIIQYK--SSE 97
G++ + + P P + + S S +I+W P +G I +Y+++ S+
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 98 EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
W ++I G+ L P Y++R+ + G S L T +
Sbjct: 64 NKW-----EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSG 116
Score = 48.6 bits (116), Expect = 1e-07
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 138 GMSETGAELQASTLEEAPNGAPR--EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDV 195
G S + ++ +T + P G P V + I W PP+++ + Y V
Sbjct: 1 GSSGSSGVVEFTTCPDKP-GIPVKPSVKGK---IHSHSFKITWD-PPKDNGGATINKYVV 55
Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF 255
+++ GS+ + + + + E L P Y + V + G+ SE
Sbjct: 56 --EMAEGSNG--NKWE----MIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 107
Query: 256 IART 259
+ +T
Sbjct: 108 LVQT 111
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 82.5 bits (204), Expect = 3e-20
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P + + + + SL+ISW A YS + Y I Y + P Q + VPG ++
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQ--EFTVPGYYST 65
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
AT+ L P Y + + A +
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGY 91
Score = 55.9 bits (135), Expect = 1e-10
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 11/108 (10%)
Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
+ + P ++ PT L I W A + Y + Y + G S
Sbjct: 4 GSSVSSVPTKLEVVD--ATPTSLKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTV 59
Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
+ I GL P Y I V Y++ G I+
Sbjct: 60 PGYY---STAT----ISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 87.3 bits (215), Expect = 4e-20
Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 21/267 (7%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR-ITE 66
++++ + S + + ++ + L ++L P P N+ +
Sbjct: 51 QQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMN 110
Query: 67 ESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ-----TSATLQPL 121
++ SL W + T + ++ S TQ I+ + S + L
Sbjct: 111 LTTSSLICQWEPGPETH-LPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHL 169
Query: 122 LPATQYQVRLLAENPLGMSE---TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
L + + AEN LG S + E P + + + L + W
Sbjct: 170 LLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW 229
Query: 179 KAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAI 238
+ ++ ++ G + + V + + GL P T Y +
Sbjct: 230 EPWQPGLHIN--QKCELRHKPQRGEA------SWALVGPLPLEALQYELCGLLPATAYTL 281
Query: 239 VVRGYNSVGKG---PFSEPFIARTNEG 262
+R G +S RT E
Sbjct: 282 QIRCIRWPLPGHWSDWSPSLELRTTER 308
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 82.0 bits (203), Expect = 4e-20
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P+ P ++ +TE ++ S+ ++W + + +T Y IQY+++ P Q + + T
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQ---EVDGVATTR 62
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
++ L P ++Y R+LA N +G ++A T E++
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG 102
Score = 41.5 bits (98), Expect = 3e-05
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 149 STLEEAPNGAPREVTSDPGVVDPTE--LLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA 206
S+ P P D V + T + + W + + + Y + Y+ +
Sbjct: 2 SSGSSGP-KPP----IDLVVTETTATSVTLTWDSGN----SEPVTYYGIQYRAAGTEG-- 50
Query: 207 LSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
E+D I GL+P+++YA V NS+G+GP SE ART E
Sbjct: 51 ------PFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 81.7 bits (202), Expect = 6e-20
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
P N+ + E+ SLQ+SWT P + Y + Y + + P + + VPG+
Sbjct: 5 SSGRSPPSNLALASETPDSLQVSWTPP---LGRVLHYWLTYAPASGLGPEK--SVSVPGA 59
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP-NG 157
++ TL L AT+Y+V + A G SE + + P +G
Sbjct: 60 RSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGPSSG 105
Score = 45.9 bits (109), Expect = 7e-07
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTL 212
+ P + P L + W P G +L Y + Y +SG
Sbjct: 5 SSGRSPPSNLALAS--ETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLG------PE 51
Query: 213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
KSV + + +P L TKY ++V + G+
Sbjct: 52 KSVSVPGA-RSHVTLPDLQAATKYRVLVSAIYAAGRSE 88
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 82.1 bits (203), Expect = 7e-20
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 12/132 (9%)
Query: 133 AENPLGMSE-TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLL 191
+ +G + + TL++ P G P + V T + + W+ P NG++L
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVP-GPPMGILFPE--VRTTSVRLIWQPPAAP--NGIIL 59
Query: 192 GYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF 251
Y + +++++ ++ + L + GL P + Y + G G
Sbjct: 60 AYQITHRLNTTTANTATVEVLAPSAR------QYTATGLKPESVYLFRITAQTRKGWGEA 113
Query: 252 SEPFIARTNEGD 263
+E + T +
Sbjct: 114 AEALVVTTEKRS 125
Score = 79.8 bits (197), Expect = 5e-19
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Query: 34 SCLATNYHGTAEMTIQLLVQETPE----APKNIRITEESSRSLQISWTAPYSGNTAITQY 89
S ++ G + +++ T + P I E + S+++ W P + N I Y
Sbjct: 2 SSGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAY 61
Query: 90 IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAS 149
I ++ + T ++ ++ S T L P + Y R+ A+ G E L +
Sbjct: 62 QITHRLNTTTANTATVE-VLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT 120
Query: 150 TLEEAP 155
T + +
Sbjct: 121 TEKRSG 126
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 81.3 bits (201), Expect = 1e-19
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 43 TAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT 102
+ + + P P ++T+ + S+ +SW G + YII+ S
Sbjct: 3 SGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSW 62
Query: 103 QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
Q + V T T++ L P T Y + A NP G+S+
Sbjct: 63 QTVANHVKT--TLYTVRGLRPNTIYLFMVRAINPQGLSD 99
Score = 34.3 bits (79), Expect = 0.011
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 224 ELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
+ GL P T Y +VR N G S
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPM 103
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 81.2 bits (201), Expect = 1e-19
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
P P N + ES S+ +SWT P S I Y + YK E + I
Sbjct: 15 TGVPGQPLNFKAEPESETSILLSWTPPRSDT--IANYELVYKDGEHGEEQR----ITIEP 68
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
TS LQ L P + Y RL A +P G+ + AE+ A T++ +
Sbjct: 69 GTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
Score = 77.8 bits (192), Expect = 2e-18
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + ++Q T P G P ++P T +L+ W P + + Y++ Y
Sbjct: 1 GSSGSSGDIQVITQTGVP-GQPLNFKAEP--ESETSILLSWTPPR----SDTIANYELVY 53
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ ++E Y + GL P + Y + + G G + A
Sbjct: 54 KDGEHGE-----EQRITIEPGTSYR----LQGLKPNSLYYFRLAARSPQGLGASTAEISA 104
Query: 258 RTNEGD 263
RT +
Sbjct: 105 RTMQSS 110
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 86.9 bits (214), Expect = 2e-19
Identities = 32/249 (12%), Positives = 70/249 (28%), Gaps = 16/249 (6%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWT 77
+ I + S + P+ P+ + + + SW
Sbjct: 249 QTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWN 308
Query: 78 AP---YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE 134
T+Y + S + ++ + +Q + L
Sbjct: 309 PGRITGLVGPRNTEYTLFESISGKSAVFHRIE-GLTNETYRLGVQMHPGQEIHNFTLTGR 367
Query: 135 NPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYD 194
NPLG +++ + + E P + ++ T + W P ++ + L
Sbjct: 368 NPLGQAQS--AVVINVTERVAPHDPTSLKVKD--INSTVVTFSWYLPG--NFTKINLLCQ 421
Query: 195 VGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR-GYNSVGK-GPFS 252
+ ++ ++ + + L PYT Y VR + K +S
Sbjct: 422 IEICKANSK----KEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWS 477
Query: 253 EPFIARTNE 261
+ T E
Sbjct: 478 DEKRHLTTE 486
Score = 44.9 bits (105), Expect = 1e-05
Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 16/205 (7%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
+ K+++ T + R +W AP + + I P + + +P
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTNVKIPA---- 59
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL 175
L ++V + N T E S + E P ++++D + LL
Sbjct: 60 ------LSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEIL--DLSAD---FFTSSLL 108
Query: 176 IKWKAPPRESWNGVLLGYDVGY-QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
+KW + +++ Q +AL D
Sbjct: 109 LKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCA 168
Query: 235 KYAIVVRGYNSVGKGPFSEPFIART 259
+++ +R + + + +
Sbjct: 169 THSVSIRWHIDSPHFSGYKEWSDWS 193
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 80.1 bits (198), Expect = 2e-19
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
P P + +T+ L + W+ P + + YI++ + + +P G
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKP---KYDGEDL 64
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+ T++ L +T+Y+ +++A N G S ++ +T ++
Sbjct: 65 AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSG 105
Score = 41.6 bits (98), Expect = 2e-05
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 16/114 (14%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL 205
S+ P P + P + T L ++W P + + Y + + +
Sbjct: 1 GSSGSSGP-SMP----ASPVLTKAGITWLSLQWSKPSGTP-SDEGISYILEMEEETSGYG 54
Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
Y + D Y + L TKY V YNS GK SE T
Sbjct: 55 FKPKYDGE----DLAYT----VKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 100
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 79.7 bits (197), Expect = 3e-19
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
+AP I + + + + I+W P + + + + Y + P I + +
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPP---SQPVDGFELTYGIKD--VPGDRTTIDLTEDENQ 57
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
++ L P T+Y+V L++ S A+ +T A
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNP-AKETFTTGLAAA 96
Score = 45.8 bits (109), Expect = 7e-07
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
AP ++ V T LI W P + + G+++ Y I +++L
Sbjct: 5 APSQIEVKD--VTDTTALITWMPP-----SQPVDGFELTYGIKDVPG------DRTTIDL 51
Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
E + I L P T+Y + +
Sbjct: 52 TED-ENQYSIGNLKPDTEYEVSLISRRGDMSSN 83
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 78.7 bits (194), Expect = 6e-19
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P + + + SL ISW AP S ++ + Y I Y + P Q + VP S ++
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSSS-VYYYRITYGETGGNSPVQ--EFTVPYSSST 61
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
AT+ L P Y + + A
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAGY 87
Score = 48.2 bits (115), Expect = 8e-08
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
P ++ PT LLI W AP + + Y + Y + G+S ++
Sbjct: 6 SVPTKLEVVA--ATPTSLLISWDAPMS---SSSVYYYRITYGETGGNS------PVQEFT 54
Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
+ I GL+P Y I V + G
Sbjct: 55 VPYS-SSTATISGLSPGVDYTITVYAWGEDSAGYMFMY 91
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 79.2 bits (195), Expect = 6e-19
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 37 ATNYHGTAEMTIQLLVQET-PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS 95
+++Y + L Q + + P + + + SL ISW AP + Y I Y
Sbjct: 9 SSDYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAP---AVTVRYYRITYGE 65
Query: 96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
+ P Q + VPGS+++AT+ L P Y + + A L +
Sbjct: 66 TGGNSPVQ--EFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLML 109
Score = 46.4 bits (110), Expect = 7e-07
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 17/120 (14%)
Query: 143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSG 202
+ + + + + P ++ PT LLI W AP + Y + Y + G
Sbjct: 16 DDKGENLYFQGSVSDVPTKLEVVA--ATPTSLLISWDAPA-----VTVRYYRITYGETGG 68
Query: 203 SSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFI---ART 259
+S ++ + + I GL P Y I V + I RT
Sbjct: 69 NS------PVQEFTVPGS-KSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYRT 121
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 78.7 bits (194), Expect = 8e-19
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
P A +IR+T S SL ++W P + + A+ Y ++Y P+ + S
Sbjct: 5 SSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSS--VRFLKTS 62
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+ A L+ L Y V++ A + G G E + T ++
Sbjct: 63 ENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSG 105
Score = 72.1 bits (177), Expect = 2e-16
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P A ++ P+ L + W P +G +L Y+V Y
Sbjct: 1 GSSGSSGP-PAVSDIRVTR--SSPSSLSLAWAVPRAP--SGAVLDYEVKYHEKGAEG-PS 54
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
S LK+ E + GL Y + VR + G GPF + ++T
Sbjct: 55 SVRFLKTSEN------RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQL 102
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 77.5 bits (191), Expect = 2e-18
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P+++ ++ S + ++ W + + Y SSE + PG+ TS
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAPR---PVRLVRVTYVSSEG---GHSGQTEAPGNATS 61
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
A L PL +T Y VR+ P G S T + +P+ P
Sbjct: 62 AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105
Score = 42.4 bits (100), Expect = 1e-05
Identities = 15/97 (15%), Positives = 23/97 (23%), Gaps = 15/97 (15%)
Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
+ PR + V + W+ P + V Y S G
Sbjct: 6 SGLAPPRHLGFSD--VSHDAARVFWEGAP-----RPVRLVRVTYVSSEGGHS-------G 51
Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
E + L+ T Y + V G
Sbjct: 52 QTEAPGN-ATSAMLGPLSSSTTYTVRVTCLYPGGGSS 87
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 77.4 bits (191), Expect = 2e-18
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPG 111
+ P N+R S S+ ++W P SGN I Y + Y + V
Sbjct: 15 VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQD------VDV 68
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
S S T+ L T+Y R++A N G + ++ TL ++
Sbjct: 69 SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
Score = 74.7 bits (184), Expect = 3e-17
Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 15/124 (12%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + ++ + P G + + PT + + W+ P S NG + Y + Y
Sbjct: 1 GSSGSSGRVETQPEVQLP-GPAPNLRAYA--ASPTSITVTWETP--VSGNGEIQNYKLYY 55
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ I GL YT+Y+ V YN G G +
Sbjct: 56 MEKGTDK----EQDVDVSSH------SYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAV 105
Query: 258 RTNE 261
RT
Sbjct: 106 RTLS 109
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 76.7 bits (189), Expect = 3e-18
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+AP ++++T + S+ +SWT P + IT Y I Y S P +P ++ VP S TS
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPPSAT---ITGYRITYTPSN--GPGEPKELTVPPSSTSV 57
Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
T+ L P +Y V + A S
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESP 82
Score = 44.7 bits (106), Expect = 2e-06
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
AP ++ V T + + W P + + GY + Y S+G K +
Sbjct: 3 DAPTDLQVTN--VTDTSITVSWTPP-----SATITGYRITYTPSNGPG------EPKELT 49
Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
+ + I GLTP +Y + V + P
Sbjct: 50 VPPS-STSVTITGLTPGVEYVVSVYALKDNQESP 82
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 77.7 bits (191), Expect = 3e-18
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
P + + + S+++ W + +++ EE +I G T
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
++ L P T Y+ RL +P G E + +T E+
Sbjct: 76 RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 42.6 bits (100), Expect = 1e-05
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR 226
G V + + W +E G + + I ++ + Y
Sbjct: 25 GKVTHHSIELYWDLEQKEKRQGPQ-EQWLRFSIEEEDP---KMHSYGVI--YTGYATRHV 78
Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
+ GL P T Y ++ + G+ +S T
Sbjct: 79 VEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT 111
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 76.7 bits (189), Expect = 3e-18
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
APKN+ ++E + SL++SWTAP + A ++IQY+ SE+ + + + VPGS+ S
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPDA---AFDSFMIQYQESEK--VGEAINLTVPGSERSYD 58
Query: 118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
L L P T+Y V + S + +T
Sbjct: 59 LTGLKPGTEYTVSIYGVKGGHRSNP-LSAEFTTGGHHH 95
Score = 38.6 bits (90), Expect = 2e-04
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
V L + W AP + + + YQ S ++ + E +
Sbjct: 13 VTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVG------EAINLTVPGS-ERSYDLT 60
Query: 229 GLTPYTKYAIVVRGYNSVGKGP 250
GL P T+Y + + G +
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRSN 82
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 76.7 bits (189), Expect = 5e-18
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
+ P+ P ++ + + + +SWT P + N + YII Y T + V
Sbjct: 15 SQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAET----VRVDSK 69
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSE 141
Q +++ L ++ Y + L A N G
Sbjct: 70 QRYYSIERLESSSHYVISLKAFNNAGEGV 98
Score = 62.1 bits (151), Expect = 1e-12
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + + P P + P +++ W P + N V+ GY +GY
Sbjct: 1 GSSGSSGPENDLDESQVP-DQPSSLHVRPQ---TNCIIMSWTPP--LNPNIVVRGYIIGY 54
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG-PFSEPFI 256
+ S + ++V +D++ + I L + Y I ++ +N+ G+G P E
Sbjct: 55 GVGSPYA--------ETVRVDSK-QRYYSIERLESSSHYVISLKAFNNAGEGVPLYESAT 105
Query: 257 ARTNEG 262
R+
Sbjct: 106 TRSITS 111
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 76.3 bits (188), Expect = 5e-18
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+ P NI++T + + ++W P I ++ + + P+ + + S TS
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPILP---IEGILVTFGRKND--PSDETTVDLTSSITSL 57
Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
TL L P T Y++R++A N S
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYSP 82
Score = 45.5 bits (108), Expect = 9e-07
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 14/97 (14%)
Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
P + + T ++ W+ P + G V + + S T+
Sbjct: 4 PPFNIKVTN--ITLTTAVVTWQPPI-----LPIEGILVTFGRKNDPS---DETTVDLTSS 53
Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
+ L P T Y I + N P
Sbjct: 54 ITSL----TLTNLEPNTTYEIRIVARNGQQYSPPVST 86
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 76.8 bits (189), Expect = 5e-18
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 15/126 (11%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + + +T + P+ P V T++L+ W+ + GY V Y
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVW---NATDTKVLLNWEQVKAMENESEVTGYKVFY 57
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF-I 256
+ SS +++ + + S EL L Y I V+ G G SE I
Sbjct: 58 RTSSQNNVQVLNTNKTSAEL-----------VLPIKEDYIIEVKATTDGGDGTSSEQIRI 106
Query: 257 ARTNEG 262
R
Sbjct: 107 PRITSS 112
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 76.1 bits (188), Expect = 5e-18
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
P +N++ S S+ I+W P N + Y + + +
Sbjct: 5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVS-----TGKEQNIEVD 59
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
S L+ L T+Y +R LA N G + ++ TL ++
Sbjct: 60 GLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102
Score = 75.0 bits (185), Expect = 2e-17
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P G + + PT +LI W+ P NG + GY + +
Sbjct: 1 GSSGSSGP-GPVENLQAVS--TSPTSILITWEPPAYA--NGPVQGYRLFCT-------EV 48
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
S+ +++E+D ++ GL +T+Y++ YN G G ++ T
Sbjct: 49 STGKEQNIEVDGL---SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLS 99
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 76.5 bits (188), Expect = 5e-18
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
+ P+++ + + SL ISW + + Y I Y + P Q + VPG +
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG---RGSYQYYRITYGETGGNSPVQ--EFTVPGPVHT 58
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
AT+ L P Y + + A G +
Sbjct: 59 ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93
Score = 40.7 bits (95), Expect = 6e-05
Identities = 21/103 (20%), Positives = 28/103 (27%), Gaps = 14/103 (13%)
Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
PR++ PT LLI W + G Y + Y + G+S V
Sbjct: 5 DVPRDLEVVA--ATPTSLLISWDSGR-----GSYQYYRITYGETGGNSPVQEFTVPGPVH 57
Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
I GL P Y I V +
Sbjct: 58 -------TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 76.3 bits (188), Expect = 6e-18
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 13/115 (11%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P APR + ++ W P +G++ Y V Y S A
Sbjct: 1 GSSGSSGP-DAPRNLQLSLPREAEGVIVGHWAPP--IHTHGLIREYIVEYSRSGSKMWAS 57
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
I L T Y + V S G G +S+ T +G
Sbjct: 58 QRAA----------SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102
Score = 70.9 bits (174), Expect = 6e-16
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 53 QETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSS-EEMWPTQPLKIIV 109
P+AP+N++++ E+ + W P + I +YI++Y S +MW
Sbjct: 5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMW------ASQ 58
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+ ++ LL T Y VR+ A G+ +T++ +
Sbjct: 59 RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 76.1 bits (187), Expect = 7e-18
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
+P + + R + + W P + Y+++ + + W + L V G++T
Sbjct: 7 GLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGW--EVLDPAVAGTETE 64
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+ L+ Y+ RL+A +S+ ST +
Sbjct: 65 LLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 36.4 bits (84), Expect = 0.001
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 12/106 (11%)
Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
+ PR + + P +L+ W P E L GY + + S L
Sbjct: 6 SGLSPPRGLVAV---RTPRGVLLHWDPP--ELVPKRLDGYVLEGRQGSQGWEVLDPAVAG 60
Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
+ E EL +PGL Y + + S T
Sbjct: 61 T-------ETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVST 99
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 76.3 bits (188), Expect = 8e-18
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
PE P ++ + S+ +SWT P + N + Y I Y T I V
Sbjct: 25 TRVPEVPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQT----IKVDYK 79
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGA 158
Q T++ L P++ Y + L A N +G P+
Sbjct: 80 QRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSSG 126
Score = 69.0 bits (169), Expect = 5e-15
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 135 NPLGMSETGAELQASTLEEAPN-----GAPREVTSDPGVVDPTELLIKWKAPPRESWNGV 189
+ L A T E + P + P T +++ W P E+ N V
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPL---VTSIVVSWTPP--ENQNIV 56
Query: 190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG 249
+ GY +GY I S + +++++D + + I L P + Y I ++ +N+VG+G
Sbjct: 57 VRGYAIGYGIGSPHA--------QTIKVDYK-QRYYTIENLDPSSHYVITLKAFNNVGEG 107
Query: 250 -PFSEPFIARTNEG 262
P E + R +
Sbjct: 108 IPLYESAVTRPHTS 121
Score = 27.4 bits (61), Expect = 2.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 244 NSVGKGPFSEPFIARTNEGD 263
+S GP ++ A T E D
Sbjct: 2 SSGSSGPATDWLSAETFESD 21
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 75.9 bits (187), Expect = 9e-18
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
P + + RS+ +SW P N I Y I+Y E +
Sbjct: 5 SSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNS---SMARSQ 61
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+A + L P Y V++ A G + ++ TL ++
Sbjct: 62 TNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104
Score = 70.6 bits (173), Expect = 9e-16
Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 13/114 (11%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P + + + W P + NG++L Y++ Y +
Sbjct: 1 GSSGSSGP-STVPIMHQVS--ATMRSITLSWPQPEQP--NGIILDYEIRYYEKEHNEF-- 53
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
+S +S RI GL P Y + VR G G FS +T
Sbjct: 54 NSSMARSQTN------TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLT 101
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 75.9 bits (187), Expect = 1e-17
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
Q P IR S+ + W P N I +Y I+Y ++ + +
Sbjct: 8 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYS---TLKAV 64
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE-EAP 155
T AT+ L P T+Y ++ A G ++ T + P
Sbjct: 65 TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSGP 108
Score = 73.2 bits (180), Expect = 1e-16
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ + AP + + T + + W+ P + NG++L Y++ Y
Sbjct: 4 GSSGQAAP-SQVVVIRQER--AGQTSVSLLWQEPEQP--NGIILEYEIKYY--EKDKEMQ 56
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
S TLK+V + GL P T+Y VR S G G FS+ T +
Sbjct: 57 SYSTLKAVTT------RATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 75.1 bits (185), Expect = 1e-17
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P + + + SL ISW A S ++ Y I Y + P Q + VPGS ++
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDASSSS---VSYYRITYGETGGNSPVQ--EFTVPGSSST 59
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
AT+ L P Y + + A
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLY 85
Score = 49.7 bits (119), Expect = 2e-08
Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 18/112 (16%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S++ P EV + PT LLI W A + Y + Y + G+S
Sbjct: 1 GSSVSSVPTKL--EVVA----ATPTSLLISWDASS-----SSVSYYRITYGETGGNSPVQ 49
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
S + I GL+P Y I V Y S +S +
Sbjct: 50 EFTVPGSS---STAT----ISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 78.4 bits (192), Expect = 1e-17
Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 11/207 (5%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSA 116
P NI + +++ + WT P Y +QY ++ W + + +
Sbjct: 11 KPANITFLSINMKNV-LQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDL 69
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI 176
+ + QY R+ A S+ + E G P + D + +
Sbjct: 70 SAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALT----TDEKSISV 125
Query: 177 KWKAP--PRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
AP + + + + Y + L++ + ++ L + L P T
Sbjct: 126 VLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH-TLVLTWLEPNT 184
Query: 235 KYAIVVRGYNSV--GKGPFSEPFIART 259
Y + V + + SE ART
Sbjct: 185 LYCVHVESFVPGPPRRAQPSEKQCART 211
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 75.6 bits (186), Expect = 1e-17
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + T E+ P G ++ + T L + W+ P + NG+L GY + +
Sbjct: 1 GSSGSSGPQLVRTHEDVP-GPVGHLSFSE--ILDTSLKVSWQEPGEK--NGILTGYRISW 55
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+ + ++ ++ Y E R+ GLT T Y I V S G+G S I+
Sbjct: 56 EEYNRTNTRVTHYLPNVTL-------EYRVTGLTALTTYTIEVAAMTSKGQGQVSASTIS 108
Query: 258 RT 259
Sbjct: 109 SG 110
Score = 73.2 bits (180), Expect = 1e-16
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
++ P ++ +E SL++SW P N +T Y I ++ + +P
Sbjct: 15 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNR--TNTRVTHYLPNV 72
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
+ L T Y + + A G G ++ P P
Sbjct: 73 TLEYRVTGLTALTTYTIEVAAMTSKG---QGQVSASTISSGVPPSGP 116
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 74.8 bits (184), Expect = 2e-17
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
+ PK + T+ S++I+W +P +++Y + Y S E+ L G + +A
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESP---QGQVSRYRVTYSSPED--GIHELFPAPDGEEDTA 57
Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
LQ L P ++Y V ++A + S+
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMESQ 82
Score = 41.2 bits (97), Expect = 3e-05
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
P+ + VD + I W++P G + Y V Y +
Sbjct: 4 RPKGLAFTD--VDVDSIKIAWESP-----QGQVSRYRVTYSSPEDG-------IHELFPA 49
Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
+ E + GL P ++Y + V + +
Sbjct: 50 PDGEEDTAELQGLRPGSEYTVSVVALHDDMESQ 82
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 74.6 bits (183), Expect = 3e-17
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS----------SEEMWPTQPL 105
P +T S S+ + W P + I + +QY+ ++ + +P
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 62
Query: 106 KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE 145
G +A++ L P Y+ R+LA ++
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
Score = 42.2 bits (99), Expect = 2e-05
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 164 SDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS-----LALSSYTLKSVE 216
+ P V ++++W P + ++ + V Y++ Y
Sbjct: 7 TPPNVTRLSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 64
Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
+ + L P Y + S S
Sbjct: 65 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 74.4 bits (183), Expect = 3e-17
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P+ P +R + + W P + + Y IQ + PL+ PGS
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPPQN---PVDTYDIQVTAPG----APPLQAETPGSAVD 60
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP-NGAPREVTSD 165
L L+ T Y + ++ A + +T EAP + +EVT
Sbjct: 61 YPLHDLVLHTNYTATVRGLRGPNLTSP-ASITFTTGLEAPRDLEAKEVTPS 110
Score = 35.1 bits (81), Expect = 0.005
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 28/99 (28%)
Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL------SSYT 211
P ++ + + ++ WK P + YD+ L Y
Sbjct: 10 GPTQLRALN--LTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGAPPLQAETPGSAVDYP 62
Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
L L +T Y VRG
Sbjct: 63 LH---------------DLVLHTNYTATVRGLRGPNLTS 86
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 73.5 bits (181), Expect = 6e-17
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 56 PEAPKNIRITEE-SSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
P R+ ++ +Q+ W P G + I+ Y ++ E+ P + + GS+
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE----VYQGSE 64
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
T+ LLP Y RL A N +G + +T +
Sbjct: 65 VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106
Score = 44.6 bits (106), Expect = 2e-06
Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
S+ P G G E+ ++W PP + Y V
Sbjct: 2 SSGSSGPPGPCLPPRL-QGRPKAKEIQLRWG-PPLVDGGSPISCYSVEMSPIEKDE---- 55
Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
E+ E E + L P Y+ +R N +G GPFSE T
Sbjct: 56 -----PREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 101
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 72.9 bits (179), Expect = 7e-17
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
+ + +TE ++ S +SW + ++ + ++Y+ SEE +P + +P + T
Sbjct: 5 SHLVATSESVTEITASSFVVSWVSASD---TVSGFRVEYELSEE--GDEPQYLDLPSTAT 59
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
S + LLP +Y V + + G +T
Sbjct: 60 SVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 34.8 bits (80), Expect = 0.005
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
+ A E ++ + + ++ W + + G+ V Y++S +
Sbjct: 5 SHLVATSESVTE---ITASSFVVSWVSAS-----DTVSGFRVEYELSEEGD------EPQ 50
Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
++L + + IP L P KY + V + G+ T
Sbjct: 51 YLDLPST-ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 78.5 bits (192), Expect = 8e-17
Identities = 41/234 (17%), Positives = 67/234 (28%), Gaps = 19/234 (8%)
Query: 39 NYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQI-SWTAPYSGNTAITQYIIQYKSSE 97
G + E P I + W Y+ T Q++ +
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 247
Query: 98 EMWPTQPLKIIVPGSQTSAT----LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
K I T Q + Y +R+ A + S E++ T +
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 307
Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
A P I AP + V+ Y + Y+I + S+ K
Sbjct: 308 AFLLPPVFNIR----SLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWEN--TSNAERK 361
Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK----GPFSEPFIARTNEGD 263
+E +P L P T Y + R + K FS+ +T G+
Sbjct: 362 IIEKKTDVT----VPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGN 411
Score = 55.4 bits (132), Expect = 5e-09
Identities = 26/194 (13%), Positives = 65/194 (33%), Gaps = 14/194 (7%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPGSQTSA 116
+P+ + + + + W + + Y+ + + W + ++ +
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRS-DESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI 176
+ L + ++R+ AE S + +A G P EV + + ++I
Sbjct: 68 SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPP-EVHLEA---EDKAIVI 122
Query: 177 KWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY 236
++S L G Y + + S + + ++++ I L+P T Y
Sbjct: 123 HISPGTKDSVMWALDGLSFTYSLVIWKN--SSGVEERIENIYSRHK----IYKLSPETTY 176
Query: 237 AIVVRGYNSVGKGP 250
+ V+
Sbjct: 177 CLKVKAALLTSWKI 190
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 73.3 bits (180), Expect = 9e-17
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 56 PEAPK-NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
P P + + S +SW P YI++ + + G +T
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFRE----VYVGKET 65
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
T+ L + Y R+ A N G+S L T E +
Sbjct: 66 MCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 46.7 bits (111), Expect = 4e-07
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 154 APNGAPREVTSDPGV--VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
+ P + WK PP GY + +G
Sbjct: 5 SSGPVPATPILQLEECCTHNNSATLSWKQPPLS--TVPADGYILELDDGNGGQF------ 56
Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
E+ E + GL + Y V+ +N G P+S+ + +T+EG
Sbjct: 57 ---REVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 72.9 bits (179), Expect = 1e-16
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
EAP+++ E + R+ ++WT P Y++ + + I++PG TS
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPPVR---PAGYLLSFHTPGGQTQE----ILLPGGITS 60
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
L L P+T Y RL A +
Sbjct: 61 HQLLGLFPSTSYNARLQAMWGQSLLP 86
Score = 39.0 bits (91), Expect = 2e-04
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 16/96 (16%)
Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
APR++ + V P L+ W PP GY + + G + + L
Sbjct: 10 APRDLEAKE--VTPRTALLTWTEPP-----VRPAGYLLSFHTPGG--------QTQEILL 54
Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
++ GL P T Y ++ P
Sbjct: 55 PGG-ITSHQLLGLFPSTSYNARLQAMWGQSLLPPVS 89
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 75.6 bits (185), Expect = 1e-16
Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 19/211 (9%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS-EEMWPTQPLKIIVPG 111
P+ ++ + ++ + W + + Y +QYK + W +
Sbjct: 5 THESLKPQRVQFQSRNFHNI-LQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQE 63
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
T + Y R+ A + SE + + E P +
Sbjct: 64 LSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPP-VMNITQ---VN 119
Query: 172 TELLIKWKAP------PRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGEL 225
LL+ AP +E + Y++ Y++ + K E ++ +
Sbjct: 120 GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIIN--NSLEKEQKVYEGAHR---AV 174
Query: 226 RIPGLTPYTKYAIVVRGYNSV--GKGPFSEP 254
I LTP++ Y +V Y + + SE
Sbjct: 175 EIEALTPHSSYCVVAEIYQPMLDRRSQRSEE 205
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 74.1 bits (181), Expect = 4e-16
Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 21/218 (9%)
Query: 56 PEAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ- 113
P +P N+ + ++ SL W + T +I++ S Q I ++
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETH-LPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 114 ----TSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLEEAPNGAPREVTSDP 166
S + LL + + AEN LG + + E P ++ D
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDV 123
Query: 167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR 226
P L + WK + ++ YQ + V + +
Sbjct: 124 VSHQPGCLWLSWKPWK--PSEYMEQECELRYQPQLKGA------NWTLVFHLPSSKDQFE 175
Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSE---PFIARTNE 261
+ GL Y + +R S G +S R
Sbjct: 176 LCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 213
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 71.2 bits (174), Expect = 5e-16
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE------MWPTQPLKI 107
+ + +T+ ++ SL+++W AP A +++++ P ++
Sbjct: 7 GSRPRLSQLSVTDVTTSSLRLNWEAPPG---AFDSFLLRFGVPSPSTLEPHPRPLLQREL 63
Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNG 157
+VPG++ SA L+ L T Y + L +++ + A TL +G
Sbjct: 64 MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS-IQGTARTLSGPSSG 112
Score = 38.8 bits (90), Expect = 2e-04
Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 147 QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA 206
+ + P + VT V + L + W+APP G + + + + S S+L
Sbjct: 2 SSGSSGSRPRLSQLSVTD----VTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLE 52
Query: 207 LSSYTLKSVELDNQYEGELR---IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
L EL G + L T Y++ + G K S ART G
Sbjct: 53 PHPRPLLQREL--MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKAD-SIQGTARTLSG 108
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 71.3 bits (175), Expect = 6e-16
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 42 GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK--SSEEM 99
G++ L P+ P + + SL++SW P + Y ++Y+ + E+
Sbjct: 4 GSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEP-RCERPLQGYSVEYQLLNGGEL 62
Query: 100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
I +QTS ++ LLP Y R+ A++ G G E + E+ P
Sbjct: 63 HRLN----IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEG---WGREREGVITIESQVSGP 115
Score = 62.8 bits (153), Expect = 8e-13
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 13/122 (10%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + + P P + + PT L + W+ P L GY V Y
Sbjct: 1 GSSGSSGSHDSRLTAGVP-DTPTRLVFSA--LGPTSLRVSWQEPRC---ERPLQGYSVEY 54
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
Q+ +G L + + N + + + L P Y VR + G G E I
Sbjct: 55 QLLNGG-------ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVIT 107
Query: 258 RT 259
Sbjct: 108 IE 109
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 71.1 bits (174), Expect = 8e-16
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 165 DPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGE 224
+P V+ PT + + W + + + GY V Y+ +SG ++ + ++++ E
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQF---IQGYRVMYRQTSGLQ---ATSSWQNLDAKVPTERS 76
Query: 225 LRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
+ L Y I VR Y + +G SE RT E
Sbjct: 77 AVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
Score = 53.3 bits (128), Expect = 2e-09
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 64 ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI--IVPGSQTSATLQPL 121
+ ++Q++WT I Y + Y+ + + T + ++ SA L L
Sbjct: 24 PVVLTPTTVQVTWTVD-RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
Query: 122 LPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
Y++++ T EE+
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESG 116
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 70.5 bits (173), Expect = 8e-16
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P P + I+ + + + W P + Y +QY ++E P I
Sbjct: 8 PGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPN---TIDFGKDDQH 63
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
T+ L T Y RL A+N G+ E E + T E+ G
Sbjct: 64 FTVTGLHKGTTYIFRLAAKNRAGLGEE-FEKEIRTPEDLS-GPS 105
Score = 60.5 bits (147), Expect = 4e-12
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 14/114 (12%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P G P + S L++W P + G LLGY + Y + +
Sbjct: 1 GSSGSSGP-GRPTMMIST---TAMNTALLQWHPP--KELPGELLGYRLQYCRADEARPNT 54
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
+ D + + GL T Y + N G G E I +
Sbjct: 55 IDFGKD----DQHF----TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPED 100
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 70.0 bits (171), Expect = 3e-15
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTA-----ITQYIIQYKSS-EEMWPTQPL 105
+ ++ +R++ ++W+ P S + Y+
Sbjct: 14 FEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKY 73
Query: 106 KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN--GAPR 160
K + G +T+ TL L PA Y ++ AE +TL P+ PR
Sbjct: 74 KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPR 130
Score = 49.2 bits (117), Expect = 8e-08
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 4/122 (3%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
G S + + + E + + V SD + +++ W PP NG V
Sbjct: 1 GSSGSSGDEETKAFEALLSNIVKPVASD---IQARTVVLTWS-PPSSLINGETDESSVPE 56
Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
++ + K + E + + L P Y V+ + KG SE I
Sbjct: 57 LYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIF 116
Query: 258 RT 259
T
Sbjct: 117 TT 118
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 68.5 bits (168), Expect = 4e-15
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSS-EEMWPTQPLKIIVPGSQ 113
AP+++ + + + + + W P G I Y+++Y E W P P +
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEW--VPANK-EPVER 65
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
T++ L + R++ N G SE LQ T+ E+
Sbjct: 66 CGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESG 107
Score = 43.1 bits (102), Expect = 6e-06
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P AP+ +T + V T +KW+ P R G + GY V Y +
Sbjct: 1 GSSGSSGPTSAPQHLTVE--DVTDTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSE---- 53
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
+ + L + V G N G+ +
Sbjct: 54 ---EWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATL 97
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 68.7 bits (168), Expect = 6e-15
Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP----YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
P ++ + ++++SW + + Y +++++S
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYK---SEDT 75
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGA 158
+ S T L P T Y+ ++ S A+T E + +
Sbjct: 76 TSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122
Score = 65.3 bits (159), Expect = 9e-14
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 12/127 (9%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP--PRESWNGVLLGYDV 195
G S + + P P V + + + + W P+ + Y V
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAV--ALTHDAVRVSWADNSVPKNQKTSEVRLYTV 58
Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF 255
++ S +S + ++ GL P T Y V + +S
Sbjct: 59 RWRTSFSAS--------AKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA 110
Query: 256 IARTNEG 262
A T E
Sbjct: 111 HATTYEA 117
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 67.9 bits (166), Expect = 9e-15
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP----YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
P ++ + S +++I+W + T Y +++K++ P
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTN---IPANTKYKNANA 65
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
+ S + L P T Y+ ++ S +T E +
Sbjct: 66 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSG 109
Score = 66.8 bits (163), Expect = 2e-14
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 12/117 (10%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP--PRESWNGVLLGYDVGYQISSGSSL 205
S+ P P V + ++ + I W P+ Y V ++ + ++
Sbjct: 1 GSSGSSGPMMPPVGVQAS--ILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN- 57
Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
+ N + GL P T Y V +S T E
Sbjct: 58 -------TKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL 107
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 71.8 bits (176), Expect = 2e-14
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Query: 49 QLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKI 107
+ PE P+ I ++ +SW P G + +T Y I+ + + +
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSP---- 58
Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
T T++ L QY+ R++AEN G S+ + R D
Sbjct: 59 CAKSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDE 117
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
+Y R +G L I V D G + A N +GT E + L V
Sbjct: 527 VKYMKRY----NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 37.9 bits (88), Expect = 0.002
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 30/119 (25%)
Query: 143 GAELQASTLEEAPNGAPREVTSDPGVVD--PTELLIKWKAPPRESWNG--VLLGYDVGYQ 198
GA + E P P + + +++ WK P +G ++ Y + +
Sbjct: 1 GAMVADVPEPEPPRF--------PIIENILDEAVILSWKPPA---LDGGSLVTNYTIEKR 49
Query: 199 ISSGSS---LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
+ G S A S YT ++E GL +Y + N G+ EP
Sbjct: 50 EAMGGSWSPCAKSRYTYTTIE------------GLRAGKQYEFRIIAENKHGQSKPCEP 96
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 68.9 bits (168), Expect = 3e-14
Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 21/207 (10%)
Query: 57 EAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI-------- 107
+ NI T+ + W+ + A + ++Y S P
Sbjct: 2 DVNINISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDC 61
Query: 108 -IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
+ QP+ + Y + + + LG ++ P V ++
Sbjct: 62 YLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDS-PPTCVLPDSVVKPLPPSSVKAEI 120
Query: 167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR 226
++ L I W+ P N L + + Y L+ K E+ + +
Sbjct: 121 -TINIGLLKISWEKPVFPENN---LQFQIRYG------LSGKEVQWKMYEVYDAKSKSVS 170
Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+P YA+ VR G G +S
Sbjct: 171 LPVPDLCAVYAVQVRCKRLDGLGYWSN 197
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 65.6 bits (160), Expect = 5e-14
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
P+ + + + R++ ++W T Y+++ + + + V +
Sbjct: 8 PLPPPRALTLAAVTPRTVHLTWQPS----AGATHYLVRCSPASPKGEEEERE--VQVGRP 61
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP-NG 157
L L P Y+V + + SE ++A T P +G
Sbjct: 62 EVLLDGLEPGRDYEVSVQSLRGPEGSEA-RGIRARTPTSGPSSG 104
Score = 41.7 bits (98), Expect = 2e-05
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 15/103 (14%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ P PR +T V P + + W+ + Y V +S
Sbjct: 1 GSSGSSGPLPPPRALTLAA--VTPRTVHLTWQPSAGAT------HYLVRCSPASPKGEEE 52
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
+ V++ E+ + GL P Y + V+
Sbjct: 53 E----REVQVGRP---EVLLDGLEPGRDYEVSVQSLRGPEGSE 88
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 67.8 bits (165), Expect = 6e-14
Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 32/218 (14%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
P+N+R+ + +++ + W +P +T + QY S + + T
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQLT-FTAQYLSYRIFQDK-----CMQTTLTECD 56
Query: 118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIK 177
L + +R+ AE S+ + + P + V L ++
Sbjct: 57 FSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTII--GPPGMQV---EVLADCLHMR 111
Query: 178 WKAPPRES--------WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG 229
+ AP E+ Y+V Y + L N
Sbjct: 112 FLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRN---------- 161
Query: 230 LTPYTKYAIVVRGYNSV--GKGPFSEPFIARTNEGDFL 265
L P+T Y + VRG+ G +SEP +T + +
Sbjct: 162 LEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETV 199
Score = 35.5 bits (81), Expect = 0.009
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT----------QYIIQYKSSEEMWP 101
V +T P +++ + L + + AP N T Y +QY
Sbjct: 89 VDDTIIGPPGMQVEV-LADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGT--- 144
Query: 102 TQPLKIIVPGSQTSATLQPLLPATQY--QVRLLAENPLGMSETGAELQASTLEEA 154
K + L+ L P T Y QVR + E + T +
Sbjct: 145 --DEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDE 197
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 65.5 bits (160), Expect = 6e-14
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSS-EEMWPTQPLKIIVPGSQ 113
P + + + ++ + W P + G + Y+++Y E W +
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVA---NKDLIDK 64
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
T T+ L + VR+ A N G SE Q ++E+
Sbjct: 65 TKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESG 106
Score = 39.3 bits (92), Expect = 2e-04
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 14/105 (13%)
Query: 152 EEAPNGAPREVTSDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
+ P + V T + ++W+ P L GY + Y +++
Sbjct: 4 GSSGTSPP----TLLTVDSVTDTTVTMRWRPPDHIG-AAGLDGYVLEYCFEGTEDWIVAN 58
Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
L + I GL K + V+ N+ G
Sbjct: 59 KDLIDKT-------KFTITGLPTDAKIFVRVKAVNAAGASEPKYY 96
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 65.4 bits (160), Expect = 8e-14
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
+ P + ++ + W P Y+G IT YI++ + + +
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKA--NFSNILEN 68
Query: 115 SATLQPLLPATQYQVRLLAENPLG-MSETGAELQASTLEEAP 155
T+ L Y+ R++A+N G +S A T +
Sbjct: 69 EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110
Score = 33.5 bits (77), Expect = 0.015
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 158 APREVTSDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV 215
+P + P ++ + +KW P + + Y V + L +
Sbjct: 9 SPIDPPGKPVPLNITRHTVTLKWA-KPEYTGGFKITSYIVEKR-------DLPNGRWLKA 60
Query: 216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK-GPFSEP 254
N E E + GLT Y V N+ G P SEP
Sbjct: 61 NFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEP 100
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 67.0 bits (163), Expect = 1e-13
Identities = 36/210 (17%), Positives = 63/210 (30%), Gaps = 17/210 (8%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPGSQT 114
P P+ + + + W G T Y + Y E + P I +
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGG-LPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTE- 173
Q Y + + A N +G S + EL P E+ + + +
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSSFS-DELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 174 -LLIKWKAPPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL 230
L IKW P L Y++ + + + + +++ I L
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-----AEWEIHFAGQQTEFK----ILSL 172
Query: 231 TPYTKYAIVVRGYNSVGK-GPFSEPFIART 259
P KY + VR G +S +
Sbjct: 173 HPGQKYLVQVRCKPDHGYWSAWSPATFIQI 202
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 68.5 bits (166), Expect = 2e-13
Identities = 29/232 (12%), Positives = 76/232 (32%), Gaps = 21/232 (9%)
Query: 45 EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSG------NTAITQYIIQYKSSEE 98
+T+ L P P++++I+ + ++W+ + ++ + YK ++
Sbjct: 98 RLTVTLTQHVQPPEPRDLQISTDQDH-FLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQD 156
Query: 99 MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAS---TLEEAP 155
W ++ SQ + + L+P++ Y R+ G +G + S + P
Sbjct: 157 SWEDAA-ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQP 215
Query: 156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV 215
+ + L W+ + + + + Y+ S + +
Sbjct: 216 GDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVS---FGLFYKPSPDA-------GSAVL 265
Query: 216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFL 267
+ + LR + +T++ + + G + R E
Sbjct: 266 LREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSS 317
Score = 49.6 bits (117), Expect = 4e-07
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT-QYIIQYKSSEEMWPTQPLKIIVPG 111
AP ++++T++ S + W I + IQY+ W + K
Sbjct: 318 VNIQMAPPSLQVTKDGD-SYSLRWETMKMRYEHIDHTFEIQYRKDTATW--KDSKTETLQ 374
Query: 112 SQTSATLQPLLPATQYQVRLLA 133
+ S L L P+T+Y R+
Sbjct: 375 NAHSMALPALEPSTRYWARVRV 396
Score = 45.0 bits (105), Expect = 1e-05
Identities = 30/214 (14%), Positives = 69/214 (32%), Gaps = 16/214 (7%)
Query: 45 EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP 104
P+N+ + + L SW + + + YK S +
Sbjct: 207 PEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVR-KEVASSVSFGLFYKPSPDAGSAVL 265
Query: 105 LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTS 164
L+ T++ ++ +P + +Q E+ + +
Sbjct: 266 LRE--EECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMA 323
Query: 165 DPGV---VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQY 221
P + D ++W+ + + + +++ Y+ + + K+ L N +
Sbjct: 324 PPSLQVTKDGDSYSLRWE-TMKMRYEHIDHTFEIQYRKDTATW-----KDSKTETLQNAH 377
Query: 222 EGELRIPGLTPYTKYAIVVRGY--NSVGKGPFSE 253
+ +P L P T+Y VR + G +SE
Sbjct: 378 S--MALPALEPSTRYWARVRVRTSRTGYNGIWSE 409
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 66.4 bits (161), Expect = 3e-13
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 7/126 (5%)
Query: 36 LATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN--TAITQYIIQY 93
+ A + AP ++++ + ISW + + ++ +
Sbjct: 86 EGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEART 145
Query: 94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM----SETGAELQAS 149
S W PL + + Q L+ L P TQY+ ++ + G S L
Sbjct: 146 LSPGHTWEEAPL-LTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 204
Query: 150 TLEEAP 155
T A
Sbjct: 205 TKPAAL 210
Score = 50.6 bits (120), Expect = 8e-08
Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 26/202 (12%)
Query: 75 SWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT---------LQPLLPAT 125
W+ G T + W ++P SQ S Q L
Sbjct: 21 VWSQD--GALQDTSCQVHAWPDRRRWQQTC--ELLPVSQASWACNLILGAPDSQKLTTVD 76
Query: 126 QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES 185
+R+L + + AP + V+ I W+
Sbjct: 77 IVTLRVLCREGVRWRVMAIQDFKPFENLRLM-APISLQVVH--VETHRCNISWEISQASH 133
Query: 186 WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS 245
+ L ++ ++ + Q + + + LTP T+Y VR
Sbjct: 134 YFERHLEFEARTLSPG------HTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPL 187
Query: 246 VGKG----PFSEPFIARTNEGD 263
G+ P+S+P RT
Sbjct: 188 QGEFTTWSPWSQPLAFRTKPAA 209
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 66.5 bits (162), Expect = 1e-12
Identities = 48/257 (18%), Positives = 81/257 (31%), Gaps = 39/257 (15%)
Query: 3 SRYTIREQVLEDG-MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP--EAP 59
RY + + V +G ++S L I +V D G C+A + G AE + +L V P
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQM 533
Query: 60 KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQ 119
+ I + + T P +G + I+ + + + + K+ G+ ++
Sbjct: 534 EKKAIVAGETLIV----TCPVAGYPIDS--IVWERDNRALPINRKQKVFPNGTLIIENVE 587
Query: 120 PLLPATQYQVRLLAENPLGMSETG-AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
Y A+N G S G E+Q L A E + G L +
Sbjct: 588 RNSDQATYTCV--AKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVG----QYLTLHC 641
Query: 179 KA-----PPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
P W +G + D+G S + L I +
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSR----------------VGRRGSVLTIEAVE 685
Query: 232 PYTKYAIVVRGYNSVGK 248
N G
Sbjct: 686 ASHAGNFTCHARNLAGH 702
Score = 59.6 bits (144), Expect = 3e-10
Identities = 51/280 (18%), Positives = 84/280 (30%), Gaps = 69/280 (24%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA---PKNIRITEESSRSLQISW 76
L I + + +DSG C+ N G + L V A P + +
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRP----AVF 363
Query: 77 TAPYSGNTAITQYIIQ-YKSSEEMWPTQP-LKIIVPGSQTSATLQPLLPATQYQVRLLAE 134
T Y+GN T + K + + ++ L+I + YQ
Sbjct: 364 TCQYTGNPIKT---VSWMKDGKAIGHSESVLRIESVKKEDKG---------MYQCF--VR 409
Query: 135 NPLGMSETGAELQASTLEEAP--NGAPREVTSDPGVVDPTELLIKWKA----PPRESW-- 186
N +E AEL+ + P A +E T +PG + +K A P SW
Sbjct: 410 NDRESAEASAELKLGGRFDPPVIRQAFQEETMEPG----PSVFLKCVAGGNPTPEISWEL 465
Query: 187 NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP-----YTKYAIVVR 241
+G + + YQ+ V ++ L I + Y
Sbjct: 466 DGKKIANNDRYQVGQ------------YVTVNGDVVSYLNITSVHANDGGLYK-----CI 508
Query: 242 GYNSVG----------KGP--FSEPFIARTNEGDFLFLFC 269
+ VG G + G+ L + C
Sbjct: 509 AKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTC 548
Score = 40.3 bits (94), Expect = 6e-04
Identities = 36/183 (19%), Positives = 54/183 (29%), Gaps = 29/183 (15%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDS-GTLSCLATNYHGTAE---MTIQLLVQETP-- 56
+ Y + VL G EL I V +D + C + T LV P
Sbjct: 187 AEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243
Query: 57 -EAPKNIRITEESSRSLQ----ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
PK + + + ++ ++ P G YK E Q + +
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPV--FRWYKFIEGTTRKQAVVLNDRV 301
Query: 112 SQTSATLQPLLPATQ-----YQVRLLAENPLGMSETGAELQASTLEEAPN--GAPREVTS 164
Q S TL + A Y N +G L T+ + P T
Sbjct: 302 KQVSGTLI-IKDAVVEDSGKYLCV--VNNSVGGESVETVL---TVTAPLSAKIDPPTQTV 355
Query: 165 DPG 167
D G
Sbjct: 356 DFG 358
Score = 38.4 bits (89), Expect = 0.002
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQIS 75
+ + N + + +A G+ + + + P +E + + S
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDAD-QKGP---VFLKEPTNRIDFS 52
Score = 38.4 bits (89), Expect = 0.002
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
L + N+ + + G C A N G+ + ++ + +
Sbjct: 775 LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHHH 816
Score = 30.3 bits (68), Expect = 0.77
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 10 QVLEDG--MISELGIAN-VLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---EAPKNI 62
Q+ DG + + + +CLA N G+ + +
Sbjct: 89 QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148
Query: 63 RITEESSRSLQ 73
+ +S ++
Sbjct: 149 HVIRGNSAVIK 159
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 63.7 bits (155), Expect = 9e-12
Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 54/259 (20%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
++ + L + V + D+G +C A+N G + QL VQE P + + RI
Sbjct: 243 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 302
Query: 65 TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP- 123
++ + G+ I ++ YK E+ + ++ S + L
Sbjct: 303 VKQDEH---TRYECKIGGSPEIK--VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 357
Query: 124 -ATQYQVRLLAENPLGMSETGAELQASTLEEAP--NGAPREVTSDPGVVDPTELLIKWKA 180
+ Y A N G + + L ++E P P V + G ++ ++ +
Sbjct: 358 DSGDYTCE--AHNAAGSASSSTSL---KVKEPPVFRKKPHPVETLKG----ADVHLECEL 408
Query: 181 ----PPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP-- 232
P + SW + L Y+I + + + I +
Sbjct: 409 QGTPPFQVSWHKDKRELRSGKKYKI-----------------MSENFLTSIHILNVDSAD 451
Query: 233 ---YTKYAIVVRGYNSVGK 248
Y A N VG
Sbjct: 452 IGEYQCKAS-----NDVGS 465
Score = 59.4 bits (144), Expect = 3e-10
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 10/143 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
+ +++ + ++ + I NV D G C A+N G+ + ++ P + +I
Sbjct: 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIST 489
Query: 65 TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP-TQPLKIIVPGSQTSATLQPLLP 123
LQ A G I+ + +K E+ + + I + + P
Sbjct: 490 VVGEEVQLQ----ATIEGAEPIS--VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543
Query: 124 ATQYQVRLLAENPLGMSETGAEL 146
A + +N G E A L
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATL 566
Score = 51.0 bits (122), Expect = 2e-07
Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 38/180 (21%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP------KN 61
++ ++ L I V D G +C A N G + L+++E P K+
Sbjct: 51 AYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD 110
Query: 62 IRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
+ T + Q+SW YK E + L+
Sbjct: 111 VHETLGFPVAFECRINGSEPLQVSW----------------YKDGELLKDDANLQTSFIH 154
Query: 112 SQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQASTLEEAP--NGAPREVTSDPG 167
+ + + QY A NPLG + + A+L S E P + P V G
Sbjct: 155 NVATLQILQTDQSHVGQYNCS--ASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALG 212
Score = 48.3 bits (115), Expect = 1e-06
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ I+ L + ++G +C N GT E L V E
Sbjct: 524 NIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 61.6 bits (149), Expect = 1e-11
Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 28/205 (13%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG-SQTSA 116
AP+ + + + + L + W+ P Y ++Y+ E T + I S T
Sbjct: 9 APQQLSVLSTNMKHL-LMWS-PVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG 66
Query: 117 T----LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPR-EVTSDPGVVDP 171
+ Y +R+ A S + P E+T D
Sbjct: 67 PECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFH--- 123
Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
L+I+ + + + V Y + V++ + + +
Sbjct: 124 --LVIELEDLGPQ------FEFLVAYWRREPG-------AEEHVKMVRSGGIPVHLETME 168
Query: 232 PYTKYAIVVRGYNSV--GKGPFSEP 254
P Y + + + FS+
Sbjct: 169 PGAAYCVKAQTFVKAIGRYSAFSQT 193
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 62.1 bits (150), Expect = 3e-11
Identities = 26/204 (12%), Positives = 54/204 (26%), Gaps = 22/204 (10%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
+++ + + L SW P G T Y + Y Q + I Q
Sbjct: 137 ETXVQDMDCVYYNWQYLLCSWK-PGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNI 195
Query: 116 A---TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
+ + + + + + P +T
Sbjct: 196 GCRFPYLEASDYKDFYICVNGSSENKPIRS-SYFTFQLQNIVKPLPPVYLTFTR--ESSC 252
Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
E+ +KW P Y++ + ++ +VE + +
Sbjct: 253 EIKLKWS-IPLGPIPARCFDYEIEIREDD------TTLVTATVENET-----YTLKTTNE 300
Query: 233 YTKYAIVVRGYNSV---GKGPFSE 253
+ VVR ++ G +SE
Sbjct: 301 TRQLCFVVRSKVNIYCSDDGIWSE 324
Score = 56.3 bits (135), Expect = 2e-09
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 32 TLSCLATNYHGTA---EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT- 87
+ ++ + T QL P P + T ESS +++ W+ P A
Sbjct: 211 YICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCF 270
Query: 88 QYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR 130
Y I+ + + + + TL+ Q
Sbjct: 271 DYEIEIREDDTTL------VTATVENETYTLKTTNETRQLCFV 307
Score = 50.6 bits (120), Expect = 2e-07
Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 18/226 (7%)
Query: 43 TAEMTIQLLVQETPEAPKNIRITEESSRS-LQISWTAPYS---GNTAITQYIIQYK-SSE 97
T T + P++ I + L + W P S +Y ++Y+
Sbjct: 19 TFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGS 78
Query: 98 EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM-SETGAELQASTLEEAPN 156
E W K I+ + L + + L SE + +T +P
Sbjct: 79 ETW-----KTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQ 133
Query: 157 GAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
G P D V + LL WK + Y++ Y +K+
Sbjct: 134 GIPETXVQDMDCVYYNWQYLLCSWKPGIG---VLLDTNYNLFYWYEGLDHALQCVDYIKA 190
Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN 260
+ + Y + I V G + S N
Sbjct: 191 DGQNIGCR--FPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQN 234
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 60.4 bits (146), Expect = 3e-11
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 45 EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT---QYIIQYKSSEEMWP 101
+ + + P AP N+ + S +L ++W+ PY + + Y + S +
Sbjct: 87 KGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPAD 146
Query: 102 TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLEEAP 155
+ + L Y+ R+ A SE + P
Sbjct: 147 FRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREP 203
Score = 44.3 bits (104), Expect = 1e-05
Identities = 30/183 (16%), Positives = 52/183 (28%), Gaps = 17/183 (9%)
Query: 75 SWTAPYSGNTAITQYIIQYKSSE---EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL 131
W T+ + Y+ E P G + ++ A Y + L
Sbjct: 20 EWKMN-GPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDL 78
Query: 132 LAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP-PRESWNGVL 190
A L + + P AP +T LL+ W P P +++
Sbjct: 79 WAGQQLLWKGS----FKPSEHVKPR-APGNLTVHT--NVSDTLLLTWSNPYPPDNYLYNH 131
Query: 191 LGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
L Y V + + + + +V + L Y VR +
Sbjct: 132 LTYAVNIWSENDPA----DFRIYNVTYLEPSL-RIAASTLKSGISYRARVRAWAQAYNTT 186
Query: 251 FSE 253
+SE
Sbjct: 187 WSE 189
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 58.4 bits (141), Expect = 3e-11
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTL-SCLATNYHGTAEMTIQLLVQETP 56
RYT+ E+G+IS L I+N++R D T+ +C A N G+ I+L Q +
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 57.9 bits (140), Expect = 4e-11
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 56 PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
+ ++++ ++ R L+++W Y + + +E W +
Sbjct: 10 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMV-------LEP 62
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
L L P T Y VR+ PLG + + T +
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSG 103
Score = 55.2 bits (133), Expect = 4e-10
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
S+ E+ +G ++ +P +L + W + G L Y++ +
Sbjct: 4 GSSGAESLSGLSLKLVK----KEPRQLELTWAGSRPRNPGGNL-SYELHVLNQDEEWHQM 58
Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
+ + L P T Y + VR +G GPFS RT
Sbjct: 59 VLEP------------RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 61.1 bits (147), Expect = 4e-11
Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 20/223 (8%)
Query: 44 AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQ 103
E I + A ++ + ++ SW + T Y + Y Q
Sbjct: 86 VEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG-RNTSPDTNYTLYYWHRSLEKIHQ 144
Query: 104 PLKIIVPGSQTS----ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
I G T Q+ V+++ ++ G + + T P+ P
Sbjct: 145 CENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPD-PP 203
Query: 160 REVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS-----LALSSYTLKS 214
+L ++W+ P ++ L Y+V S + + +
Sbjct: 204 HIKNLS---FHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPE 258
Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVR----GYNSVGKGPFSE 253
E + + +PG+ P T + +R +S
Sbjct: 259 FERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSN 301
Score = 54.1 bits (129), Expect = 1e-08
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 14/112 (12%)
Query: 32 TLSCLATNYHGTA---EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQ 88
++ + + G + L + P+ P ++ + L + W P + +
Sbjct: 173 SVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHND-DLYVQWENPQNFISRCLF 231
Query: 89 YIIQYKSSEEMWPTQ----------PLKIIVPGSQTSATLQPLLPATQYQVR 130
Y ++ +S+ P + + + +LP T VR
Sbjct: 232 YEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVR 283
Score = 49.5 bits (117), Expect = 3e-07
Identities = 26/209 (12%), Positives = 63/209 (30%), Gaps = 16/209 (7%)
Query: 54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT-QYIIQYKSSEEMWPTQPLKIIVPGS 112
ET N+ ++ E+ ++ +W P ++ + Y + ++
Sbjct: 2 ETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPET------- 54
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETG-AELQASTLEEAPNGAPREVTSDPGVVDP 171
+ PL QV + E S E P A E+ +
Sbjct: 55 -RRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCI--WHNL 111
Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
+ + W S + Y + Y S + + + ++ +
Sbjct: 112 SYMKCSWLPGRNTSPDT---NYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVK-DS 167
Query: 232 PYTKYAIVVRGYNSVGKGPFSEPFIARTN 260
+ ++++ + ++ GK S + T+
Sbjct: 168 SFEQHSVQIMVKDNAGKIKPSFNIVPLTS 196
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 60.1 bits (145), Expect = 6e-11
Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 20/205 (9%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT- 114
P+ + E L W S QY Y+ +E W L
Sbjct: 21 ARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAV 80
Query: 115 ----SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD 170
S ++R+ A + + L +AP G + + G
Sbjct: 81 RFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESG--- 137
Query: 171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL 230
++++W PP E+ + Y+V G+ +++ VE+ E + L
Sbjct: 138 --HVVLRWL-PPPETPMTSHIRYEVDVSAGQGAG------SVQRVEILEG-RTECVLSNL 187
Query: 231 TPYTKYAIVVR--GYNSVGKGPFSE 253
T+Y VR G +SE
Sbjct: 188 RGRTRYTFAVRARMAEPSFGGFWSE 212
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 58.6 bits (142), Expect = 1e-10
Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE------APKN 61
+ ++ DG L + ++D G +C+ATN G E + +LL+Q TP+ +
Sbjct: 53 KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEK 112
Query: 62 IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
S+ + Y G + + + + ++ + I T ++ +
Sbjct: 113 YYGAVGST----LRLHVMYIGRPVPA--MTWFHGQKLLQNSENITIENTEHYTHLVMKNV 166
Query: 122 LPAT---QYQVRLLAENPLGMSETGAELQ 147
T +Y+V+ N G + +++
Sbjct: 167 QRKTHAGKYKVQ--LSNVFGTVDAILDVE 193
Score = 46.6 bits (111), Expect = 2e-06
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 8 REQVLEDGMISELGIANVLRQ-DSGTLSCLATNYHGTAEMTIQLLVQE 54
+ + L + NV R+ +G +N GT + + + +Q+
Sbjct: 149 NITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 58.6 bits (141), Expect = 2e-10
Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 18/142 (12%)
Query: 32 TLSCLATNYHGTAE---MTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAI-- 86
S T+ G + L P P ++ +T S QISW + Y
Sbjct: 74 IFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVT--FSGQYQISWRSDYEDPAFYML 131
Query: 87 ---TQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP--LLPATQYQVRLLAENPLGMSE 141
QY +QY++ + W P + ++ S +L P + Y++++ A G S
Sbjct: 132 KGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSY 191
Query: 142 TG------AELQASTLEEAPNG 157
G + T E
Sbjct: 192 QGTWSEWSDPVIFQTQSEELKE 213
Score = 38.2 bits (88), Expect = 0.001
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 16/115 (13%)
Query: 158 APREVTSDPGVVDPTELLIKWKAP---PRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
P +VT V + I W++ P L Y++ Y+ L S
Sbjct: 103 PPFDVT----VTFSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLIS 158
Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF------SEPFIARTNEGD 263
V + L + Y + VR G S+P I +T +
Sbjct: 159 V---DSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEE 210
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 56.7 bits (136), Expect = 5e-10
Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 43 TAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT 102
A ++L P AP+N+ + + S L+++W + + ++++QY++ + T
Sbjct: 86 QATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHC--LEHLVQYRTDWDHSWT 143
Query: 103 QPLKIIVPGSQTSATLQPLLPATQYQVR 130
+ + +L + +Y R
Sbjct: 144 E----QSVDYRHKFSLPSVDGQKRYTFR 167
Score = 45.9 bits (108), Expect = 3e-06
Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 23/198 (11%)
Query: 71 SLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQ-PLKIIVPGSQTSATLQPLLPATQYQV 129
+ +W + YK+S+ + + + LQ
Sbjct: 14 YMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 73
Query: 130 RLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV 189
+ ++P ++ P AP +T + ++L + W
Sbjct: 74 VVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHK--LSESQLELNWNNRF----LNH 126
Query: 190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG 249
L + V Y+ S E Y + +P + +Y VR + G
Sbjct: 127 CLEHLVQYRTDWDHS---------WTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCG 177
Query: 250 P------FSEPFIARTNE 261
+S P +N
Sbjct: 178 SAQHWSEWSHPIHWGSNT 195
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 57.5 bits (138), Expect = 5e-10
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 24/126 (19%)
Query: 24 NVLRQDSGTLSCLATNYHGTAEMTIQLLVQET------------------PEAPKNIRIT 65
+ L + T C T + +Q+ P AP+N+ +
Sbjct: 87 HYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH 146
Query: 66 EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT 125
+ S L+++W + + ++++QY++ + T+ + +L +
Sbjct: 147 KLSESQLELNWNNRFLNHC--LEHLVQYRTDWDHSWTE----QSVDYRHKFSLPSVDGQK 200
Query: 126 QYQVRL 131
+Y R+
Sbjct: 201 RYTFRV 206
Score = 51.0 bits (121), Expect = 8e-08
Identities = 27/214 (12%), Positives = 57/214 (26%), Gaps = 23/214 (10%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGN-TAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
++ + + +W + T +T + S + + +
Sbjct: 37 TLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITS 96
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
LQ + ++P ++ P AP +T + ++L
Sbjct: 97 GCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHK--LSESQL 153
Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
+ W L + V Y+ S E Y + +P +
Sbjct: 154 ELNWNNRF----LNHCLEHLVQYRTDWDHS---------WTEQSVDYRHKFSLPSVDGQK 200
Query: 235 KYAIVVRGYNSVGKGP------FSEPFIARTNEG 262
+Y VR + G +S P +N
Sbjct: 201 RYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTS 234
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 57.1 bits (138), Expect = 9e-10
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 33/154 (21%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
+ ++ ++ L + N+ +DSG +C A N G+A + L V+E P + P +
Sbjct: 145 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVET 204
Query: 65 TEESSRSLQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
+ + L+ +SW +K E+ + KI+ T
Sbjct: 205 LKGADVHLECELQGTPPFQVSW----------------HKDKRELRSGKKYKIMSENFLT 248
Query: 115 SATLQPLLP--ATQYQVRLLAENPLGMSETGAEL 146
S + + +YQ + A N +G +
Sbjct: 249 SIHILNVDSADIGEYQCK--ASNDVGSYTCVGSI 280
Score = 55.5 bits (134), Expect = 3e-09
Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 17/167 (10%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
++ + L + V + D+G +C A+N G + QL VQE P + + RI
Sbjct: 51 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 110
Query: 65 TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP- 123
++ + G+ I ++ YK E+ + ++ S + L
Sbjct: 111 VKQDE---HTRYECKIGGSPEIK--VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 124 -ATQYQVRLLAENPLGMSETGAELQASTLEEAPN--GAPREVTSDPG 167
+ Y A N G + + L ++E P P V + G
Sbjct: 166 DSGDYTCE--AHNAAGSASSSTSL---KVKEPPVFRKKPHPVETLKG 207
Score = 51.3 bits (123), Expect = 8e-08
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
+ +++ + ++ + I NV D G C A+N G+ + ++
Sbjct: 238 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 55.9 bits (135), Expect = 1e-09
Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 36/157 (22%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP------KN 61
Q+ ++L I V + +SG S ATN G A T +LLV+ P ++
Sbjct: 53 GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQS 112
Query: 62 IRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
+ + + S L + + Y+ E+ + +I G
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKF----------------YRDGAEIQSSLDFQISQEG 156
Query: 112 SQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAEL 146
S + P + Y V A N +G + + AEL
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVN--ATNSVGRATSTAEL 191
Score = 48.2 bits (115), Expect = 4e-07
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
Q+ ++G + L IA +DSGT S ATN G A T +LLVQ
Sbjct: 149 DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 55.9 bits (134), Expect = 1e-09
Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 15/208 (7%)
Query: 53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPG 111
++ + ++++ + ++ ++W T T Y I+YK E W + +
Sbjct: 2 EDPSDLLQHVKFQSSNFENI-LTWD-SGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITR 59
Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
+ T++ Y R+ A + G S T + S+L+ P +VT V
Sbjct: 60 KSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPP-DVTCISKV--- 115
Query: 172 TELLIKWKAPPRESW--NGVLLGY-DVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
+ + P +G L D+ + + L ++ + + E
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQR---EYEFF 172
Query: 229 GLTPYTKYAIVVRGYNSV--GKGPFSEP 254
GLTP T++ + +
Sbjct: 173 GLTPDTEFLGTIMILVPTWAKESAPYMC 200
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 52.7 bits (127), Expect = 3e-09
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
+V S+L I ++ G + L N G+ + + L V + P+ P
Sbjct: 53 HMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104
Score = 29.6 bits (67), Expect = 0.43
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 53 QETP---EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIV 109
P + P++ ++ S + +G IT K +++ ++ +K+
Sbjct: 5 SSGPQIIQFPEDQKVRAGES----VELFGKVTGTQPIT--CTWMKFRKQIQESEHMKVEN 58
Query: 110 PGSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTS 164
+ + T+ Y + EN LG + L + P G P +S
Sbjct: 59 SENGSKLTILAARQEHCGCYTLL--VENKLGSRQAQVNLTVVDKPDPPAGTPSGPSS 113
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 54.9 bits (131), Expect = 5e-09
Identities = 22/211 (10%), Positives = 60/211 (28%), Gaps = 10/211 (4%)
Query: 52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT-QPLKIIVP 110
++ P + + E +++ I + + + + S +W ++ +
Sbjct: 97 FRKAQIGPPEVHLEAED-KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE 155
Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLG--MSETGAELQASTLEEAPNGAPREVTSDPGV 168
+ + L P T Y +++ A + T E P +
Sbjct: 156 NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS--- 212
Query: 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
V ++KW + + + + + L + + + +
Sbjct: 213 VQNQNYVLKWDYTYAN--MTFQVQWLHAFLKRNPGN-HLYKWKQIPDCENVKTTQCVFPQ 269
Query: 229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
+ Y + V+ + +SE T
Sbjct: 270 NVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 300
Score = 43.8 bits (102), Expect = 3e-05
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 45 EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP 104
I+ V+ P+NI ++ ++ + + W Y+ T Q++ +
Sbjct: 192 VHCIKTTVENELPPPENIEVSVQNQ-NYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK 250
Query: 105 LKIIVPGSQTSAT----LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
K I T Q + Y +R+ A + S E++ T +A
Sbjct: 251 WKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA 304
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 52.2 bits (125), Expect = 5e-09
Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 13/127 (10%)
Query: 42 GTAEMTIQLLVQETPEAPK-NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMW 100
G++ + L P P + S ++ + W + +I+ Y +QY
Sbjct: 4 GSSGEGLDYL--TAPNPPSIREELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQA 59
Query: 101 P-------TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
I+ Q T+ L T+Y + A N G + + T +
Sbjct: 60 NFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNS-EPTRLKTNSQ 118
Query: 154 APNGAPR 160
P
Sbjct: 119 PFKSGPS 125
Score = 45.7 bits (108), Expect = 1e-06
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 140 SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQI 199
+G L T P+ T + + W + + Y++ Y I
Sbjct: 4 GSSGEGLDYLTAPNPPSIREELCT-----ASHDTITVHWISDD----EFSISSYELQYTI 54
Query: 200 SSGSSLALSSYTLKS--VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
+G + +S Y + + N + + GL T+Y +V+ N G SEP
Sbjct: 55 FTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSEPTRL 113
Query: 258 RTNEGDF 264
+TN F
Sbjct: 114 KTNSQPF 120
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 53.8 bits (129), Expect = 1e-08
Identities = 28/192 (14%), Positives = 54/192 (28%), Gaps = 42/192 (21%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------ 56
R + + L + +V+ D G +C+ N G+ T L V E
Sbjct: 60 HRIGGIKLRHQQW---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 116
Query: 57 --EAPKNIRITEESSRSLQ----------ISWT-------APYSGNTAITQYIIQYKSSE 97
P N S I W + + +++ SE
Sbjct: 117 QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISE 176
Query: 98 EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNG 157
+ L++ + + + +Y A N +G++E L ++
Sbjct: 177 SVEADVRLRL------ANVSER---DGGEYLC--RATNFIGVAEKAFWL---SVHGPRAA 222
Query: 158 APREVTSDPGVV 169
V +D
Sbjct: 223 EEELVEADEAGS 234
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 53.8 bits (128), Expect = 1e-08
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWT 77
S L + N D L T + + ++ + +E + +++ ++WT
Sbjct: 113 SNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWT 172
Query: 78 APYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL 137
P + YI+ YK +++ + +TS T + L T Y ++ A+
Sbjct: 173 EP-ETTEGLEGYIL-YKDGKKVA-------EIGKDETSYTFKKLNRHTIYNFKIAAKYSN 223
Query: 138 GMSETGAELQAST 150
G + L T
Sbjct: 224 GEVSSKESLTLRT 236
Score = 37.2 bits (85), Expect = 0.003
Identities = 26/205 (12%), Positives = 52/205 (25%), Gaps = 36/205 (17%)
Query: 64 ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
+ S + ++ G + S P +++ + +
Sbjct: 61 VEAISDDGVFVNAKKIEDGKVRVLVS------SLTGEPLPAKEVLA---KVVLRAEAKTE 111
Query: 124 ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGV-----VDPTELLIKW 178
+ V + T+ +P V + ++ + + W
Sbjct: 112 GSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTW 171
Query: 179 KAPPRESWNGVLLGYDV---GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK 235
P L GY + G +++ S YT K L +T
Sbjct: 172 TEPET---TEGLEGYILYKDGKKVAEIGKDETS-YTFK---------------KLNRHTI 212
Query: 236 YAIVVRGYNSVGKGPFSEPFIARTN 260
Y + S G+ E RT
Sbjct: 213 YNFKIAAKYSNGEVSSKESLTLRTA 237
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 51.2 bits (123), Expect = 1e-08
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
R QV S I++V D G S + N G E L +Q+
Sbjct: 60 RHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 52.8 bits (127), Expect = 1e-08
Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 22/155 (14%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------ 56
+Y I+E G +L IA+V D+ ATN G+ T L V+
Sbjct: 50 LKYRIQE---FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106
Query: 57 --EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
E + S+ P+SG I K + + ++IV S T
Sbjct: 107 TLEGMGAVHALRGEVVSI----KIPFSGKPDPV--ITWQKGQDLIDNNGHYQVIVTRSFT 160
Query: 115 SATLQPLLPAT---QYQVRLLAENPLGMSETGAEL 146
S + Y V A+N G+ + EL
Sbjct: 161 SLVFPNGVERKDAGFYVVC--AKNRFGIDQKTVEL 193
Score = 45.5 bits (108), Expect = 3e-06
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
Y + S + V R+D+G A N G + T++L V +
Sbjct: 149 GHYQVIV---TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
Score = 27.8 bits (62), Expect = 3.0
Identities = 30/172 (17%), Positives = 50/172 (29%), Gaps = 42/172 (24%)
Query: 57 EAPKNIRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK 106
E +N+ + +S+ +L + W Y+ +E+
Sbjct: 9 EELRNLNVRYQSNATLVCKVTGHPKPIVKW----------------YRQGKEIIADGLKY 52
Query: 107 IIVPGSQTSATL--QPLLP--ATQYQVRLLAENPLGMSETGAEL--QASTLEEAPN--GA 158
I L + AT YQVR A N G A L + P
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVR--ATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Query: 159 PREVTSDPGVVDPTELLIKWKA--PPRESW--NGVLLGYDVGYQISSGSSLA 206
V + G + + I + P +W L+ + YQ+ S
Sbjct: 111 MGAVHALRG--EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT 160
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 50.8 bits (121), Expect = 1e-08
Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 56 PEAPKNIRIT--EESSRSLQISWTAPYSGNTA---ITQYIIQYK-SSEEMWPTQPLKIIV 109
P+ P+N+ + R L+++W P + ++ ++Y+ + W + +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW-----QHVE 62
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLG--MSETGAELQASTLEE 153
+ T+ T+ +Y +++ A++ S+ A+ E
Sbjct: 63 LSNGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTE 108
Score = 36.1 bits (83), Expect = 0.002
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 159 PREVTSDPGVVDPTELLIKWKAPPRESW-NGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
P V + P +P L + W+ P L + + Y+ + +
Sbjct: 11 PENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQ-----WQHVELSN 65
Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+ I +Y I V ++ G +S+
Sbjct: 66 GTAHT----ITDAYAGKEYIIQVAAKDN-EIGTWSD 96
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 51.4 bits (123), Expect = 3e-08
Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 33/157 (21%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--APKNIRIT 65
+ + +EL + N++ D G C ATN G E L V P KN
Sbjct: 50 KYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTY 107
Query: 66 EESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
E +L +I+W G T E + +I V G S
Sbjct: 108 ENGQVTLVCDAEGEPIPEITWKRAVDGFT-----------FTEGDKSLDGRIEVKGQHGS 156
Query: 116 ATLQPLLPAT-----QYQVRLLAENPLGMSETGAELQ 147
++L + +Y A + +G + L
Sbjct: 157 SSLH-IKDVKLSDSGRYDC--EAASRIGGHQKSMYLD 190
Score = 45.6 bits (108), Expect = 4e-06
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
R +V S L I +V DSG C A + G + ++ L ++
Sbjct: 147 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 49.7 bits (119), Expect = 4e-08
Identities = 15/49 (30%), Positives = 18/49 (36%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
R DG L + L D+G C A N G A + V E P
Sbjct: 59 RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 48.8 bits (117), Expect = 5e-08
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
P AP N+ T +++ S+ +SWTA + N +T Y + Y + + T+
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTAS-TDNVGVTGYDV-YNGTALATTV---------TGTT 52
Query: 116 ATLQPLLPATQYQVRLLAENPLG-MSETGAELQAST 150
AT+ L T Y + A++ G +S + T
Sbjct: 53 ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 28.0 bits (63), Expect = 1.0
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 28/110 (25%)
Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDV---GYQISSGSSLALSSY 210
AP AP + S + + + W A + N + GYDV ++ + ++
Sbjct: 3 AP-TAPTNLASTA--QTTSSITLSWTAS---TDNVGVTGYDVYNGTALATTVTG---TTA 53
Query: 211 TLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG-KGPFSEPFIART 259
T I GL T Y V+ ++ G S +T
Sbjct: 54 T---------------ISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 51.4 bits (122), Expect = 5e-08
Identities = 27/232 (11%), Positives = 66/232 (28%), Gaps = 19/232 (8%)
Query: 30 SGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAI-TQ 88
S + + + + + L + PK + + WT T
Sbjct: 4 SEATAAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGP 63
Query: 89 YIIQY-----KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETG 143
+ Y + + W P + + A Y ++L + +
Sbjct: 64 IQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCF 123
Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNG--VLLGYDVGYQISS 201
+ + P + + ++ ++W+AP ++L Y++ Y+ +
Sbjct: 124 -SVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN 182
Query: 202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+ + + L + L +Y + VR G + E
Sbjct: 183 E-----TKWKMMDPILTTSVP----VYSLKVDKEYEVRVRS-KQRNSGNYGE 224
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 48.9 bits (117), Expect = 5e-08
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
V + + + R DSG N G E +++VQ
Sbjct: 48 ELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 51.8 bits (123), Expect = 6e-08
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 37 ATNYHGTAE---MTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT-QYIIQ 92
++ H L + P N+ E + + I W P S Y ++
Sbjct: 199 GSSKHSAIRPFDQLFALHAIDQINPPLNVTAEIEGT-RMSIQWEKPVSAFPIHCFDYEVK 257
Query: 93 YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL 131
++ + + T+A + + ++Y V++
Sbjct: 258 IHNTRNGYLQ------IEKLMTNAFISIIDDLSKYDVQV 290
Score = 43.3 bits (101), Expect = 3e-05
Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 21/204 (10%)
Query: 42 GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP 101
G+ +I L T N SL +W + TQY + Y+
Sbjct: 105 GSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVG-TDAPEDTQYFLYYRYGSWTEE 163
Query: 102 TQPLKIIVPGSQTSATLQPLLPAT----QYQVRLLAENPLGMSETGAELQASTLEEAPNG 157
Q + G + + V + + +L A + N
Sbjct: 164 CQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQIN- 222
Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
P VT++ T + I+W+ P ++ Y+V + L+ +L
Sbjct: 223 PPLNVTAEIE---GTRMSIQWE-KPVSAFPIHCFDYEVKIHNTRNG-------YLQIEKL 271
Query: 218 DNQYEGELRIPGLTPYTKYAIVVR 241
I + +KY + VR
Sbjct: 272 MTNA----FISIIDDLSKYDVQVR 291
Score = 39.9 bits (92), Expect = 6e-04
Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 11/133 (8%)
Query: 55 TPEAPKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
+ P N I + + W +Y ++ + +E
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE-------TRI 63
Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
S + L VR + +N S + ++ L P + + + T
Sbjct: 64 TESKAVTILHMGFSASVRTILQN--DHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTT 121
Query: 173 ELLIKWKAPPRES 185
E + S
Sbjct: 122 EDNYSRLRSYQVS 134
Score = 29.5 bits (65), Expect = 1.2
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQ 198
E+ P T V ++L++WK P + V L Y V
Sbjct: 8 EKISLLPPVNFTIK--VTGLAQVLLQWKPNPDQEQRNVNLEYQVKIN 52
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 50.6 bits (121), Expect = 6e-08
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETP---EAPKNIR 63
R V ++G+ S L I N +D+G C AT+ G E T+ L + + E
Sbjct: 48 RVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE 107
Query: 64 ITEESSRSLQ----------ISWT 77
+ + +SW
Sbjct: 108 FKQGEDAEVVCRVSSSPAPAVSWL 131
Score = 36.3 bits (84), Expect = 0.004
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
R +L + L I N+ + D G C ++V
Sbjct: 144 RFAMLANNN---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 48.9 bits (117), Expect = 7e-08
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 6 TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
+ V E+G+ S L I V +D+G +C+ATN G +++L+V P
Sbjct: 55 AHKMLVRENGVHS-LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 51.0 bits (121), Expect = 1e-07
Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 23/187 (12%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE----ESSRSLQ 73
L ++ + QDSGT +C E I ++V +A + E E S L
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLA 201
Query: 74 ISWTAPY---------SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPA 124
+ ++ +I ++E+ + + L LP
Sbjct: 202 FTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ 261
Query: 125 TQYQVR------LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
Q L E G L + EV +L++
Sbjct: 262 ALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPT----SPKLMLSL 317
Query: 179 KAPPRES 185
K +E+
Sbjct: 318 KLENKEA 324
Score = 35.2 bits (80), Expect = 0.021
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 1 MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
+ R R + + G L I N+ +DS T C + + +QLLV
Sbjct: 51 LNDRADSRRSLWDQGNFP-LIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTANS- 104
Query: 61 NIRITEESSRSL----------QISWTAP 79
+ + + S +L + +P
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSP 133
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 50.7 bits (121), Expect = 1e-07
Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 14/170 (8%)
Query: 12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRS 71
+DG I L I ++D+G + + G + ++L+ + E + S +
Sbjct: 56 FKDG-ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSAT 114
Query: 72 LQISWTAPYSGNTAITQYIIQ--------YKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
+ + G + + + + +K V G Q + P
Sbjct: 115 -DLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 173
Query: 124 --ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
+Y + + + +L +EA R + +
Sbjct: 174 NDKGKYVME--LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221
Score = 46.8 bits (111), Expect = 2e-06
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
++ E G + I V DSG + N +G+ + V PE
Sbjct: 267 DHCNLKF---EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI-PE 317
Score = 45.3 bits (107), Expect = 9e-06
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
R + G L I D G + + T+ L Q EA + ++
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213
Query: 68 SS 69
++
Sbjct: 214 AA 215
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 51.2 bits (122), Expect = 1e-07
Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 22/152 (14%)
Query: 6 TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRIT 65
++ L++G + + G A N L ++ P+ +
Sbjct: 368 PCEQKGLDNG--YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV-----LA 420
Query: 66 EESSRSLQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
E S+ +W + T+ I +E +W + + + +S
Sbjct: 421 EASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEI-----TEGVWNRKANRKVFGQWVSS 475
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQ 147
+TL + V+ A N LG S L
Sbjct: 476 STLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Score = 42.0 bits (98), Expect = 1e-04
Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 12/78 (15%)
Query: 12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA--PKNIRITEESS 69
L++ + + I + +G + + + ++ T + E+
Sbjct: 97 LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQ 156
Query: 70 RSL----------QISWT 77
+L + W
Sbjct: 157 DALVCISESVPEPIVEWV 174
Score = 38.1 bits (88), Expect = 0.002
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 18/76 (23%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP-----EAPKNIRITEESSRS 71
I +++V R D+G +C ++ + + + + E + ++ I +
Sbjct: 289 ILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEIDQYEEFC 345
Query: 72 L----------QISWT 77
+ +WT
Sbjct: 346 FSVRFKAYPQIRCTWT 361
Score = 36.6 bits (84), Expect = 0.007
Identities = 9/54 (16%), Positives = 15/54 (27%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
+ + +S + + C A N GT+ TI L
Sbjct: 459 VWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
Score = 28.1 bits (62), Expect = 3.2
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL-VQETPEAP 59
+ + + + C A N G + + + +TP+
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT 233
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 48.2 bits (115), Expect = 1e-07
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
R ++ + G ++ L I +V ++D+G + A N G +L V P
Sbjct: 61 DRISLYQD--NTGRVT-LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
YTI+ DG S L D G + +A N G T +L+VQ P
Sbjct: 54 DHYTIQRD--LDGTCS-LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 49.8 bits (118), Expect = 2e-07
Identities = 13/101 (12%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 37 ATNYHGTAEMTIQLLVQET---PEAPKNIRIT-EESSRSLQISWTAPYSGNTAIT--QYI 90
G +T + + T PEAP ++ + E + +++ + + +
Sbjct: 91 ICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHD 150
Query: 91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL 131
+ Y+ ++ + + ++ + + L PA Y++++
Sbjct: 151 VAYRQEKDENKWTHVN--LSSTKLTLLQRKLQPAAMYEIKV 189
Score = 35.9 bits (82), Expect = 0.008
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
AP +++ + ++ + + +L +DV Y+ + V L
Sbjct: 115 APFDLSVVY-REGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDEN------KWTHVNL 167
Query: 218 DNQYEGELRIPGLTPYTKYAIVVRG-YNSVGKGPFSE---PFIARTNEGD 263
+ + L L P Y I VR + KG +SE + RT E +
Sbjct: 168 SST-KLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEIN 216
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 50.6 bits (121), Expect = 2e-07
Identities = 30/135 (22%), Positives = 44/135 (32%), Gaps = 14/135 (10%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRITEESSRSLQI 74
L I NV +DSG CLA+N G+ TI + V+ P + PKN+ +
Sbjct: 275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED----G 330
Query: 75 SWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP--ATQYQVRLL 132
+GN T + + E + P T + YQ
Sbjct: 331 RLVCRANGNPKPT--VQWMVNGEPLQSAPPNPNREVAGDT-IIFRDTQISSRAVYQCN-- 385
Query: 133 AENPLGMSETGAELQ 147
N G A +
Sbjct: 386 TSNEHGYLLANAFVS 400
Score = 40.6 bits (95), Expect = 4e-04
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ + C +N HG + V +
Sbjct: 367 DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 33.3 bits (76), Expect = 0.071
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP----EAPKNIRITE 66
+ + + G C A N GTA I+L V ++P E + + E
Sbjct: 76 VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQE 130
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 49.5 bits (118), Expect = 2e-07
Identities = 29/179 (16%), Positives = 47/179 (26%), Gaps = 31/179 (17%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------ 56
R + + L + +V+ D G +C+ N +G+ T L V E
Sbjct: 64 HRIGGYKVRNQHW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPIL 120
Query: 57 --EAPKNIRITEESSRSLQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQP 104
P N I W N +
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG-----PDGLPYLKVLK 175
Query: 105 LKIIVPGSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPRE 161
I + L + A +Y N +G + A L ++AP G +E
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYIC--KVSNYIGQANQSAWLTVLPKQQAP-GREKE 231
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 50.9 bits (121), Expect = 2e-07
Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 39/239 (16%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--APKNIRIT 65
+ ++E + + S C A N G E I V PE +++ T
Sbjct: 503 QFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPT 562
Query: 66 EESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK----IIVPG 111
E+ S SL ++W G + ++ + + K +
Sbjct: 563 EQESVSLWCTADRSTFENLTWY--KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNS 620
Query: 112 SQTSATLQPLLPAT-----QYQVRLLAENPLGMSETGAELQASTLEEAP---NGAPREVT 163
+ ++ L A+ Y A++ Q + LE G T
Sbjct: 621 TNDILIME-LKNASLQDQGDYVCL--AQDRKTKKRHCVVRQLTVLERVAPTITGNLENQT 677
Query: 164 SDPGVVDPTELLIKWKA--PPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELD 218
+ G + E+ PP+ W + L D G + G+ + T++ V +
Sbjct: 678 TSIG--ESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN----RNLTIRRVRKE 730
Score = 50.5 bits (120), Expect = 3e-07
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
L I V ++D G +C A + G A++ +++ E
Sbjct: 720 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 762
Score = 44.7 bits (105), Expect = 2e-05
Identities = 31/238 (13%), Positives = 68/238 (28%), Gaps = 33/238 (13%)
Query: 7 IREQVLEDGM-ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------EAP 59
+ DG+ L I V+ D+G C + + + + +P +
Sbjct: 74 VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQH 133
Query: 60 KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT----S 115
+ ITE ++++ I S + + E+ + +I + S
Sbjct: 134 GVVYITENKNKTVVIPCLGSISN----LNVSLCARYPEKRFVPDGNRISWDSKKGFTIPS 189
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN---GAPREVTSDPG----- 167
+ A A+ ++ + + + G
Sbjct: 190 YMIS---YAGMVFCE--AKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 244
Query: 168 -----VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQ 220
+ W+ P + + L+ D+ Q S LS+ T+ V +Q
Sbjct: 245 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302
Score = 44.0 bits (103), Expect = 3e-05
Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 11/158 (6%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
+ I + + N QD G CLA + + + I
Sbjct: 611 KLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT 670
Query: 64 ITEES---SRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP 120
E+ S I + SGN I+ +K +E + I++ + T++
Sbjct: 671 GNLENQTTSIGESIEVSCTASGNPPPQ--IMWFKDNETLVEDS--GIVLKDGNRNLTIRR 726
Query: 121 LLP--ATQYQVRLLAENPLGMSETGAELQASTLEEAPN 156
+ Y + A + LG ++ A +E N
Sbjct: 727 VRKEDEGLYTCQ--ACSVLGCAKVEAFFIIEGAQEKTN 762
Score = 43.6 bits (102), Expect = 4e-05
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
+S L I V R D G +C A++ T + + + V E P
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 331
Score = 41.3 bits (96), Expect = 2e-04
Identities = 29/206 (14%), Positives = 64/206 (31%), Gaps = 23/206 (11%)
Query: 22 IANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSR-----SLQISW 76
I + + +G + C A + + + ++V + L ++
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 246
Query: 77 TAPYSGNTAITQY----IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT-----QY 127
TA N I +++ + + + + +TL + T Y
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT-IDGVTRSDQGLY 305
Query: 128 QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKA--PPRES 185
A + L + ++ G+ E + V + + K+ PP
Sbjct: 306 TCA--ASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK 363
Query: 186 W--NGVLLGYDVGYQISSGSSLALSS 209
W NG+ L + + I +G L +
Sbjct: 364 WYKNGIPL--ESNHTIKAGHVLTIME 387
Score = 37.0 bits (85), Expect = 0.005
Identities = 27/257 (10%), Positives = 57/257 (22%), Gaps = 34/257 (13%)
Query: 29 DSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ------ISWTAPYSG 82
C+ T ++ L + + I ++ + + W P +
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNNQ 67
Query: 83 NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET 142
+ + + + S T L I Y+ S
Sbjct: 68 SGSEQRVEVTECSDGLFCKT--LTI------PKVIGN---DTGAYKCF--YRETDLASVI 114
Query: 143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKA-----PPRESW---NGVLLGYD 194
+Q + + + ++I +
Sbjct: 115 YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174
Query: 195 VGYQISSGSSLALSSYTLKSVELDN--QYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS 252
S T+ S + E +I + + IVV + S
Sbjct: 175 NRISWDSKKGF-----TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS 229
Query: 253 EPFIARTNEGDFLFLFC 269
+ G+ L L C
Sbjct: 230 PSHGIELSVGEKLVLNC 246
Score = 36.7 bits (84), Expect = 0.007
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEM--TIQLLVQETPE 57
L I V +D+G + + TN + + L+V P+
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ 422
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 46.9 bits (112), Expect = 2e-07
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
R + ++ L I +V +QD G + N G+ T+ + ++
Sbjct: 53 RFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 50.1 bits (119), Expect = 2e-07
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
+ + G L + ++G + LA N G A +I + P
Sbjct: 298 LEPAANETVRHG---CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 39.0 bits (90), Expect = 0.001
Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 31/166 (18%)
Query: 3 SRYTIREQVLEDGMISELGIANVLR-QDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
S ++ L L +ANV + ++C A N G AE+++Q+ V +
Sbjct: 200 SATVMKSGGLPSL---GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLH 256
Query: 62 IRITEESSRSL---------QISWT---APYSGNTAITQYIIQYKSSEEMWPTQPLKIIV 109
+ + W + + + I ++ ++ E L++
Sbjct: 257 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEP-AANETVRHGCLRLNQ 315
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
P + Y LLA NP G + + P
Sbjct: 316 PTHVNNGN---------Y--TLLAANPFGQASASIMA---AFMDNP 347
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 48.3 bits (115), Expect = 3e-07
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
+ I E+G S L I+ V D +C A N G A T +LLV+ + +
Sbjct: 86 RHFQIDYD--EEGNCS-LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGE 142
Query: 63 RITEESSR 70
EE
Sbjct: 143 GEGEEDEE 150
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 47.0 bits (112), Expect = 4e-07
Identities = 10/49 (20%), Positives = 15/49 (30%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
R V + + R DSG + TI++ V E
Sbjct: 69 RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 46.6 bits (111), Expect = 4e-07
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 11 VLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
VL+DG L I V ++D G +C A + G A++ +++ E
Sbjct: 58 VLKDG-NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 46.7 bits (111), Expect = 4e-07
Identities = 11/64 (17%), Positives = 19/64 (29%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
+ + L ++G + +A N GTA TI + P +
Sbjct: 50 KIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109
Query: 63 RITE 66
T
Sbjct: 110 SPTP 113
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 46.9 bits (111), Expect = 5e-07
Identities = 10/59 (16%), Positives = 16/59 (27%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
+ + E+ I +G C T + L V E+ NI
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 46.3 bits (110), Expect = 6e-07
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
R + LE+G+ L I D+G +C+A+ G A + + VQE
Sbjct: 55 RIKQLENGV---LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 46.7 bits (110), Expect = 6e-07
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 21/129 (16%)
Query: 140 SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP---PRESWNGVLL-GYDV 195
S + ++ STL P P++VT GV P + + W+ P P NG + GY V
Sbjct: 2 SSGSSGVEFSTLPAGPPAPPQDVTVQAGV-TPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 196 ---GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS 252
G +++ S + + L + VR ++ G+ S
Sbjct: 61 YAKGQRVAEVIFPTADSTAV-------------ELVRLRSLEAKGVTVRTLSAQGESVDS 107
Query: 253 EPFIARTNE 261
Sbjct: 108 AVAAVPPEL 116
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 45.8 bits (109), Expect = 7e-07
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET 55
R + E G L I N+ D+GT +C+AT+ G + L V E+
Sbjct: 55 RATIQEQGT---LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 45.9 bits (109), Expect = 7e-07
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 3 SRYTIR-EQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
+ L + N ++G + +A N +G E I P
Sbjct: 46 KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 48.4 bits (115), Expect = 8e-07
Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 24/162 (14%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
+Y + + + I E+ + + +D GT + + T T+ L+ + K
Sbjct: 153 PKYKMH--IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 210
Query: 63 RITEESSRSLQISWTAPYSGNTAITQYIIQ----------------YKSSEEMWPTQPLK 106
+ Q Y + + YK E+ + K
Sbjct: 211 EFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--K 268
Query: 107 IIVPGSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAEL 146
+ + A Y+V ++ G ++ +L
Sbjct: 269 HDFKDGICTLLITEFSKKDAGIYEVI--LKDDRGKDKSRLKL 308
Score = 41.9 bits (98), Expect = 1e-04
Identities = 22/182 (12%), Positives = 54/182 (29%), Gaps = 22/182 (12%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA--------EMTIQLLVQETPEAP 59
R +V G +++ ++ D G SC T+ G A E+ L + + P
Sbjct: 48 RLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFP 107
Query: 60 KNIRITEESSRSLQ----ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
+E + L+ W + + + +E++ K+ + +
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKYKMHIDRNTGI 165
Query: 116 ATLQPLLPAT-----QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD 170
+ + Y + ++ + + L ++ A +
Sbjct: 166 IEMF-MEKLQDEDEGTYTFQ--LQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG 222
Query: 171 PT 172
P
Sbjct: 223 PH 224
Score = 39.2 bits (91), Expect = 9e-04
Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
++ ++ + L I ++D+G + + G + ++L+ +
Sbjct: 267 EKHDFKDGI------CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 45.4 bits (108), Expect = 8e-07
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
+Y I EDG+ L + ++ + D GT C N +G +L V+ E
Sbjct: 47 EKYEITY---EDGVAI-LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 48.3 bits (115), Expect = 9e-07
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETP---EAPKNIR 63
R V ++G+ S L I N +D+G C AT+ G E T+ L + + E
Sbjct: 50 RVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE 109
Query: 64 ITEESSRSL----------QISWT 77
+ + +SW
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAVSWL 133
Score = 47.1 bits (112), Expect = 2e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
+ + +EL + N++ D G C ATN G E L V +
Sbjct: 240 KYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHHH 291
Score = 42.5 bits (100), Expect = 7e-05
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 42/159 (26%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLVQETP------EAPK 60
R +L + L I N+ + D G C G + +++ P +
Sbjct: 146 RFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSF 202
Query: 61 NIRITEESSRSLQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP 110
N + ISW +++ + + + K I+
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISW----------------FRNGKLIEENE--KYILK 244
Query: 111 GSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQ 147
GS T T++ ++ Y R A N G E A LQ
Sbjct: 245 GSNTELTVRNIINSDGGPYVCR--ATNKAGEDEKQAFLQ 281
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 47.5 bits (113), Expect = 1e-06
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPK 60
S R + L I L I D G C+ATN GT L V+ T
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHH 210
Query: 61 N 61
+
Sbjct: 211 H 211
Score = 42.9 bits (101), Expect = 3e-05
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 8 REQVLEDGMISELGIANV-LRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
+DG S L I + +D C+A+N G ++ +L V + P+
Sbjct: 53 EVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR 106
Score = 28.2 bits (63), Expect = 2.6
Identities = 20/126 (15%), Positives = 33/126 (26%), Gaps = 35/126 (27%)
Query: 52 VQETP---EAPKNIRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEE 98
+ P P + S +I W K ++
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVW----------------NKKGKK 46
Query: 99 MWPTQPLKIIVP-GSQTSATLQPLLPAT---QYQVRLLAENPLGMSETGAELQASTLEEA 154
+ + I GS + +QPL Y+ A N +G L ++
Sbjct: 47 VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV--ASNNVGEISVSTRLTVLREDQI 104
Query: 155 PNGAPR 160
P G P
Sbjct: 105 PRGFPT 110
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 45.0 bits (107), Expect = 1e-06
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
+ ++ ED L I DSG +C N G+ + +L ++
Sbjct: 52 KYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 47.2 bits (112), Expect = 1e-06
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
++ E G + I V DSG + N +G+ + V PE
Sbjct: 162 DHCNLKF---EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI-PE 212
Score = 46.0 bits (109), Expect = 3e-06
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
R + G L I D G + + T+ L Q EA + ++
Sbjct: 49 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 108
Query: 68 SS 69
++
Sbjct: 109 AA 110
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 46.6 bits (111), Expect = 1e-06
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETPE---APKNIR 63
R + E+G L I +V D G C A N G A E L V+ P+ P N++
Sbjct: 54 RYSIRENG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK 111
Query: 64 ITEESSRSLQ----------ISWT 77
I E L +SW
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSVSWI 135
Score = 40.1 bits (94), Expect = 2e-04
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQ 53
R VLE G L I NV ++D+G C+A N GTA ++L V+
Sbjct: 146 RIAVLESGS---LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 44.6 bits (106), Expect = 2e-06
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
R +G + L I R D+G +C A N +G + +L V+
Sbjct: 52 RFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 47.5 bits (113), Expect = 2e-06
Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISW 76
L I N ++D+G+ C+A N G QL P +I + E S + W
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEES----VFW 315
Query: 77 TAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP--ATQYQVRLLAE 134
+G T K+ + + ++I Q + + + A YQ AE
Sbjct: 316 ECKANGRPKPT--YRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCV--AE 367
Query: 135 NPLGMSETGAELQ 147
N G+ + AEL
Sbjct: 368 NKHGVIFSSAELS 380
Score = 39.0 bits (91), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
L I V D+G C+A N HG + +L V
Sbjct: 347 GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 35.6 bits (82), Expect = 0.012
Identities = 39/228 (17%), Positives = 66/228 (28%), Gaps = 61/228 (26%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMT---IQLLVQETP-------- 56
R E G L IA V + D G +C+ TN ++ L+++
Sbjct: 150 RFVSQETG---NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPK 206
Query: 57 ---EAPKNIRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQ 103
+ P+ + + ++ L I W A +
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI------- 259
Query: 104 PLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN--GAPRE 161
L+I + + + Y+ AEN G + +L T PN +
Sbjct: 260 -LEIPNFQQEDAGS---------YECV--AENSRGKNVAKGQL---TFYAQPNWVQIIND 304
Query: 162 VTSDPGVVDPTELLIKWKA----PPRESW--NGVLLGYDVGYQISSGS 203
+ + + KA P W NG L QI G+
Sbjct: 305 IHVAME----ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT 348
Score = 31.0 bits (70), Expect = 0.40
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 20/85 (23%)
Query: 10 QVLEDGMISELGIANVLR-QDSGTLSCLATNYHGTAEM-TIQLLVQETP----EAPKNIR 63
+ DG L I N + QD+GT C+ATN GT +L +
Sbjct: 57 YSVVDG---SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVS 113
Query: 64 ITE-----------ESSRSLQISWT 77
+ S L +W
Sbjct: 114 VRRGQGMVLLCGPPPHSGELSYAWI 138
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 45.5 bits (107), Expect = 2e-06
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
R +V S + ++D G + N G ++ + + V +
Sbjct: 93 RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 46.4 bits (110), Expect = 2e-06
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 17/89 (19%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETP---EA 58
R ++ + L I N D+G C+ T GT E T+ + + + A
Sbjct: 50 QRISVVWNDDDSST---LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA 106
Query: 59 PKNIRITEESSRSLQ----------ISWT 77
P E + I W
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Score = 35.6 bits (82), Expect = 0.008
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
R VL + L I + + D GT C + V
Sbjct: 148 RFIVLSNNY---LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 47.5 bits (113), Expect = 2e-06
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 19/145 (13%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
+ +L L I+NV DSGT +C+ T + + +L V P P N+
Sbjct: 268 KYSLLGGS---NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA 324
Query: 65 TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP- 123
E I + SG T + K+ + + P+ +I+ + + ++
Sbjct: 325 YESMD----IEFECAVSGKPVPT--VNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKS 375
Query: 124 -ATQYQVRLLAENPLGMSETGAELQ 147
YQ AEN G +++ A+L
Sbjct: 376 DEGFYQCV--AENEAGNAQSSAQLI 398
Score = 43.7 bits (103), Expect = 3e-05
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
Q++ L I V++ D G C+A N G A+ + QL+V +
Sbjct: 358 YFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 42.1 bits (99), Expect = 1e-04
Identities = 39/226 (17%), Positives = 64/226 (28%), Gaps = 48/226 (21%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---------E 57
R VL G L I+ + DSG C A N T ++ + P +
Sbjct: 170 RVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQ 226
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
P N+ E SG + + E + ++ GS
Sbjct: 227 RPSNVIAIEGKD----AVLECCVSGYPPPS--FTWLRGEEVIQLRSKKYSLLGGS----N 276
Query: 118 LQPLLPATQ------YQVRLLAENPLGMSETGAELQASTLEEAPN--GAPREVTSDPGVV 169
L + Y AEL T+ P P + +
Sbjct: 277 LL--ISNVTDDDSGTYTCV--VTYKNENISASAEL---TVLVPPWFLNHPSNLYAYES-- 327
Query: 170 DPTELLIKWKA----PPRESW--NGVLLGYDVGYQISSGSSLALSS 209
++ + P +W NG ++ +QI GS+L +
Sbjct: 328 --MDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILG 371
Score = 37.5 bits (87), Expect = 0.003
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 8 REQVLEDG--MISELGIANVLRQDSGTLSCLATN--YHGTAEMTIQLLVQETP---EAPK 60
R+Q L +G +I + + + D G C A+ T +++V +
Sbjct: 70 RKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTE 129
Query: 61 NIRITEESSRSL----------QISWT 77
+I + L I W
Sbjct: 130 SITAFMGDTVLLKCEVIGDPMPTIHWQ 156
Score = 26.7 bits (59), Expect = 8.5
Identities = 4/55 (7%), Positives = 11/55 (20%), Gaps = 14/55 (25%)
Query: 37 ATNYHGTAEMTIQLLVQETP---EAPKNIRITEESSRSL-----------QISWT 77
+ ++ + + P + + L I W
Sbjct: 3 WGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWK 57
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 44.2 bits (105), Expect = 2e-06
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
S+ G+++ L I + DSGT + TNY G A L V
Sbjct: 53 SKIHYTN---TSGVLT-LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 47.4 bits (112), Expect = 3e-06
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 4 RYTIREQVLEDG-MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
T+ G ++ + I + + +GT+ C A N G + +
Sbjct: 459 VQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNK 513
Score = 47.0 bits (111), Expect = 3e-06
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE------TPEAPKNIRITEESSRS 71
+ L I++ DSG C A N G+A +T L V + P + + + +
Sbjct: 273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332
Query: 72 LQ 73
L
Sbjct: 333 LI 334
Score = 42.7 bits (100), Expect = 7e-05
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
Y E +SEL + + + GT + L +N A + + V PE
Sbjct: 360 EDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE 414
Score = 34.3 bits (78), Expect = 0.040
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 13/63 (20%)
Query: 28 QDSGTLSC----LATNYHGTAEMTIQLLVQETP---EAPKNIRITEESSRSLQ------I 74
+ + C L G+++ ++ P ++ + L +
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64
Query: 75 SWT 77
WT
Sbjct: 65 KWT 67
Score = 32.7 bits (74), Expect = 0.11
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQI 74
+E ++G +C + +I + V++ + +++ E++ ++
Sbjct: 80 NEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVDRSLYGKEDNDTLVRC 136
Query: 75 SWTAP 79
T P
Sbjct: 137 PLTDP 141
Score = 30.4 bits (68), Expect = 0.69
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 22 IANVLR-QDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPKNIRITEES 68
I +V R L C + L V+ +A + +++ S
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKAS 220
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 44.7 bits (105), Expect = 3e-06
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
S L I V R D G +C A++ T + + + V E P
Sbjct: 74 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 46.5 bits (110), Expect = 3e-06
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
L + V QD+G SC+A+N GT T+ V E+
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 45.3 bits (107), Expect = 7e-06
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP----EAPKNIRITEESS 69
S L N +++GT C TI L V++ + + + E
Sbjct: 51 STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQE 106
Score = 35.7 bits (82), Expect = 0.011
Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNY-HGTAEMTIQLLVQETPEAPKNIRITEES 68
I DS T C + I L V P I++
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSK 195
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 46.8 bits (111), Expect = 3e-06
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRITEESS 69
L I NV +D GT C A N G ++++ P + + S
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSD 311
Score = 40.2 bits (94), Expect = 4e-04
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
EL + ++ +DSG C+A N HGT + +L VQ
Sbjct: 346 GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 34.1 bits (78), Expect = 0.042
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
R G L IA D G SC AT++ ++ + A ++ R
Sbjct: 151 RFVSQTTG---NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDAR 203
Score = 29.8 bits (67), Expect = 0.87
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 17/75 (22%)
Query: 20 LGIANVLR-QDSGTLSCLATNYHGTAEM-TIQLLVQETP----EAPKNIRITE------- 66
L I+N ++ +D+G+ C+ATN GT L E ++ITE
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 67 ----ESSRSLQISWT 77
+L W
Sbjct: 123 CSPPPHYPALSYRWL 137
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 46.5 bits (110), Expect = 3e-06
Identities = 26/147 (17%), Positives = 38/147 (25%), Gaps = 25/147 (17%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP--------EAPKNIRITEESSRS 71
L + +V+ D G +C+ N G+ T L V E P N S
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241
Query: 72 LQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
I W + + +L +
Sbjct: 242 FHCKVYSDAQPHIQW---LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 122 LP--ATQYQVRLLAENPLGMSETGAEL 146
A +Y LA N +G S A L
Sbjct: 299 TFEDAGEYTC--LAGNSIGFSHHSAWL 323
Score = 45.0 bits (106), Expect = 1e-05
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
D + L + NV +D+G +CLA N G + + L+V E
Sbjct: 287 DKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330
Score = 36.9 bits (85), Expect = 0.005
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
R + Q L+ + N +DSG SC + V + P + +
Sbjct: 54 ERVLVGPQRLQ--------VLNASHEDSGAYSCRQRLTQRVLC-HFSVRVTDAPSSGDDE 104
Query: 63 RITEESSRSLQISWTAPY 80
+E+ + + APY
Sbjct: 105 DGEDEAEDTGVDT-GAPY 121
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 45.6 bits (108), Expect = 4e-06
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 7 IREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---EAPKNI 62
+ V E I L + +V R D+G C + T + L V+ P PK++
Sbjct: 49 LYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDL 108
Query: 63 RITEESSRSLQ 73
+ + L
Sbjct: 109 AVPPNAPFQLS 119
Score = 33.2 bits (76), Expect = 0.046
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQ 53
+ S + S SC A N G A T + +Q
Sbjct: 138 TKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 43.9 bits (103), Expect = 4e-06
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
++ S+ SL + W + +++ Y I + + S+
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSN-------LNVSEPR 60
Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
A + L +T Y + + G LQ T
Sbjct: 61 AVIPGLRSSTFYNITVCPVLGDIEGTPG-FLQVHTPPV 97
Score = 27.0 bits (59), Expect = 3.6
Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 14/82 (17%)
Query: 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
+ T L + WK ES Y + + SS S IP
Sbjct: 19 ISATSLTLIWKVSDNES--SSNYTYKIHVAGETDSSNLNVSEP------------RAVIP 64
Query: 229 GLTPYTKYAIVVRGYNSVGKGP 250
GL T Y I V +G
Sbjct: 65 GLRSSTFYNITVCPVLGDIEGT 86
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 46.1 bits (109), Expect = 4e-06
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
+ L + V Q +G SC+A+N G ++ V E+
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283
Score = 44.2 bits (104), Expect = 2e-05
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP----EAPKNIR 63
+ DG S L N Q++GT C I L V++ + +
Sbjct: 41 HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVV 100
Query: 64 ITEESS 69
+ E+
Sbjct: 101 VFEDQD 106
Score = 38.0 bits (88), Expect = 0.002
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNY-HGTAEMTIQLLVQETPEAPKNIRITEES 68
I S C A ++I+L VQ+ P + +
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAE 195
Score = 28.0 bits (62), Expect = 3.7
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 29 DSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQIS 75
L CL T+ E + L+ ++ + I
Sbjct: 105 QDALLPCLLTDPV--LEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIH 149
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 45.2 bits (106), Expect = 5e-06
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
S L I V R D G +C A++ T + + + V E P
Sbjct: 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
Score = 31.7 bits (71), Expect = 0.15
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 22 IANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ 73
I + + +G + C A + + +I +V ++ ++ L
Sbjct: 68 IPSYMISYAGMVFCEAKI-NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 118
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 43.3 bits (101), Expect = 5e-06
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 57 EAPKNIRITEESSR--SLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
P + ITE S+ S I W AP + I++YI++++ + + +PG
Sbjct: 6 SGPVEVFITETPSQPNSHPIQWNAPQPSH--ISKYILRWRPKNS--VGRWKEATIPGHLN 61
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSET 142
S T++ L P Y+ +L++ G E
Sbjct: 62 SYTIKGLKPGVVYEGQLISIQQYGHQEV 89
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 45.0 bits (106), Expect = 6e-06
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA 58
L ++ + QDSGT +C E I ++V +A
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183
Score = 33.8 bits (77), Expect = 0.032
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 1 MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
+ R R + + G L I N+ +DS T C + + +QLLV
Sbjct: 52 LNDRADSRRSLWDQGNFP-LIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTANS- 105
Query: 61 NIRITEESSRSLQ----------ISWTAP 79
+ + + S +L + +P
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSP 134
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 43.2 bits (102), Expect = 6e-06
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 55 TPEAPKNIRITEESS-RSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
P P + +SS + ++W A Y ++ + T I +
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAA----PGANSYNVKRSTKSGGPYTT---IATNITS 56
Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
T+ T + T+Y + A + + AE
Sbjct: 57 TNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
Score = 30.1 bits (68), Expect = 0.23
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 185 SWNGV--LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRG 242
+WN Y+V SG T+ + Y G+ TKY VV
Sbjct: 25 TWNAAPGANSYNVKRSTKSGGPYT----TIATNITSTNY----TDTGVATGTKYYYVVSA 76
Query: 243 YNSVGKGPFSEPFIART 259
++ + S I +
Sbjct: 77 VSNGVETLNSAEAILQY 93
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 46.0 bits (109), Expect = 6e-06
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRIT 65
+ +G L V +D G +C A ++++L V + +
Sbjct: 294 GSVSVRNGD---LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLN 348
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 45.9 bits (109), Expect = 6e-06
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
Y +R VL DG L NV QD+G +C+ +N G + L V T
Sbjct: 385 GAYKVRIAVLSDGT---LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 42.9 bits (101), Expect = 6e-06
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
+ +G L I NV D+GT C +N + T L VQ
Sbjct: 55 SRAMDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 45.9 bits (109), Expect = 7e-06
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
R VL DG L ++VL D+G +C+ TN G + + L V
Sbjct: 400 RISVLNDGT---LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 42.8 bits (101), Expect = 7e-06
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE-APKN 61
+R I + +E + + + DSG +C+ ++ G+ + V + P +
Sbjct: 47 NRTRITGEEVE--------VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 45.8 bits (108), Expect = 7e-06
Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 6 TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
++ L++G + + G A N L ++ + +
Sbjct: 368 PCEQKGLDNG--YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH 421
Score = 43.5 bits (102), Expect = 3e-05
Identities = 5/55 (9%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRITEES 68
+ + I + +G + + + ++ T R E
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQ 156
Score = 39.3 bits (91), Expect = 0.001
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQ 73
I +++V R D+G +C ++ + + + + E + +
Sbjct: 289 ILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEIDQYEEFC 345
Query: 74 ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP--ATQYQVRL 131
S + I S + P + + S + +Y
Sbjct: 346 FS--VRFKAYPQIR--CTWTFSRKSF----PCEQKGLDNGYSISKFCNHKHQPGEYIFH- 396
Query: 132 LAENPLGMSETGAELQ 147
AEN L
Sbjct: 397 -AENDDAQFTKMFTLN 411
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 44.7 bits (105), Expect = 8e-06
Identities = 26/204 (12%), Positives = 64/204 (31%), Gaps = 17/204 (8%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSA 116
+P ++ E + + WT P + T Y + W + +A
Sbjct: 7 SPPSVWFEAEFFHHI-LHWT-PIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTA 64
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI 176
L + Y+ R+ A + S+ +++E + +L
Sbjct: 65 VTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLE----IHNGFILG 120
Query: 177 KWKAPPRESWNGVLLGYDVGYQISSGSSLAL----SSYTLKSVELDNQYEGELRIPGLTP 232
K + PR Y+ + +A+ +T ++ ++ + +
Sbjct: 121 KIQ-LPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHE---QFSLLTSGE 176
Query: 233 YTKYAIVVRGY--NSVGKGPFSEP 254
++ + V+ + KG +S+
Sbjct: 177 VGEFCVQVKPSVASRSNKGMWSKE 200
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 43.4 bits (102), Expect = 9e-06
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK---NIRITEESSRS 71
L + ++G + LA N G A +I + P I T +S
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGD 119
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 44.5 bits (105), Expect = 1e-05
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPKNIR 63
R ++++ G L I+NV D G C+A N GT E +L+VQ A +
Sbjct: 163 RVRIVDGG---NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
Score = 35.6 bits (82), Expect = 0.008
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 8 REQVLEDG-MISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP----EAPKN 61
+DG + + QD G C+A N G A L + PK+
Sbjct: 58 HRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKD 117
Query: 62 IRITEESSRSLQ 73
R+ + + L+
Sbjct: 118 TRVAKGETALLE 129
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 44.1 bits (104), Expect = 1e-05
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 8 REQVLEDGMISELGIANV-LRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
R ++ +EL I N+ + +D G C ATN G+A ++ L V+
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 42.5 bits (100), Expect = 3e-05
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 14/73 (19%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSL-- 72
E I +DSG C+ + + V+ P+ ++ E +
Sbjct: 56 MEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYC 114
Query: 73 --------QISWT 77
+ W
Sbjct: 115 KSVGYPHPEWMWR 127
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 42.3 bits (100), Expect = 1e-05
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
++EL I + L +D GT +CLA N G + + V
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 43.9 bits (103), Expect = 1e-05
Identities = 10/106 (9%), Positives = 23/106 (21%), Gaps = 20/106 (18%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APK 60
+ + L + G C L V + +
Sbjct: 53 PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSE 112
Query: 61 NIRITEESSRSL----------QISWT-------APYSGNTAITQY 89
+ + S ++ + W AP + N + +
Sbjct: 113 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE 158
Score = 34.6 bits (79), Expect = 0.017
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE 45
+DG +S ++ + ++C+ N A
Sbjct: 154 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 42.3 bits (100), Expect = 1e-05
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
V+ +G ++ L I +D+G +C TA L V+E P
Sbjct: 55 DVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS----LHVEEKASGP 100
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 44.4 bits (105), Expect = 1e-05
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
+ + +DS +C+A + G E Q+ V+ P+A
Sbjct: 254 VGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTK 298
Score = 44.0 bits (104), Expect = 2e-05
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 20/87 (22%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT---AEMTIQLLVQETP----EAPK 60
R + L G L I + D G C+ATN G + + + VQ P
Sbjct: 157 RIKQLRSG---ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM 213
Query: 61 NIRITEESSRSLQ----------ISWT 77
+ I + ++ + W
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWM 240
Score = 39.0 bits (91), Expect = 8e-04
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 21/88 (23%)
Query: 11 VLEDGMISELGIANV-LRQDSGTLSCLATNYHGTAEMTIQLLVQETP----------EAP 59
++ + L I + +D C+A N G + +L V P
Sbjct: 56 EFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP 115
Query: 60 KNIRITEESSRSL----------QISWT 77
+ + + ++ +I+W
Sbjct: 116 QLKVVERTRTATMLCAASGNPDPEITWF 143
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 41.9 bits (99), Expect = 1e-05
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
R ED + L I +V +DS ++ A N G LLVQ
Sbjct: 50 DRIYWYWP--EDNVCE-LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 44.3 bits (104), Expect = 1e-05
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ L I++ DSG C A N G+A +T L V E
Sbjct: 238 HNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288
Score = 30.5 bits (68), Expect = 0.53
Identities = 9/72 (12%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKN 61
+ + + +E +GT +C +N + +I + V++ +
Sbjct: 44 FKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFLVGLP 100
Query: 62 IRITEESSRSLQ 73
+ E+S ++
Sbjct: 101 LFGKEDSDALVR 112
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 43.8 bits (103), Expect = 2e-05
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
+R + D +L V DSG C A N +GTA + +
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 42.3 bits (99), Expect = 6e-05
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGT--AEMTIQLLVQETPE---APKNIRITEESSRSL 72
S + ++V R+D+G +C+ + G E++I L V P +T + L
Sbjct: 65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVL 124
Query: 73 Q 73
Sbjct: 125 T 125
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 42.3 bits (99), Expect = 2e-05
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 3 SRYTIRE--QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ + + EL I + +G+ C + L V E
Sbjct: 55 QHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 43.5 bits (102), Expect = 2e-05
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 3 SRYTIREQVLEDGMISELGIANV-LRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
+ R V SEL I N+ + D G C T+ G+ + I L V+
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 32.7 bits (74), Expect = 0.064
Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 16/139 (11%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQ- 73
+ G SC+ T + + P + I E + L
Sbjct: 49 QKTEFKVDSDDQWGEYSCVFLPEPM---GTANIQLHGPPRVKAVKSSEHINEGETAMLVC 105
Query: 74 ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL--QPLLPAT---QYQ 128
S + P T Y I + + + V SQ + L + L QY+
Sbjct: 106 KSESVP--PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR 163
Query: 129 VRLLAENPLGMSETGAELQ 147
+ G + L+
Sbjct: 164 CN--GTSSKGSDQAIITLR 180
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 41.9 bits (99), Expect = 2e-05
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 6 TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ V E G+ S L V D+G +C+A N G A T+QL V
Sbjct: 51 LHKMIVSEKGLHS-LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 44.5 bits (105), Expect = 2e-05
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA---PKNIRITEESS 69
L I + + +DSG C+ N G + L V A P +
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRP 324
Score = 39.5 bits (92), Expect = 7e-04
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
S L I +V ++D G C N +AE + +L +
Sbjct: 353 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 29.9 bits (67), Expect = 0.87
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 10 QVLEDG--MISELGIANVLR-QDSGTLSCLATNYHGTA---EMTIQLLVQETPEA-PKNI 62
Q+ DG + + + + +CLA N G+ ++ ++ +V + EA
Sbjct: 54 QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 113
Query: 63 RITE 66
+
Sbjct: 114 HVIR 117
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 44.3 bits (104), Expect = 2e-05
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA-----PKNIRITEESSRSLQI 74
L + L++DSGT C N +M+I+L V E +A +T +S L
Sbjct: 83 LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVC 142
Query: 75 SWTAPY-SGNTAITQYIIQ-YKSSEEMWPTQPLKIIVPGSQT 114
+ + T + IQ YK S + + V G+
Sbjct: 143 PDLSEFTRDKTDVK---IQWYKDSLLLDKDNEKFLSVRGTTH 181
Score = 37.7 bits (87), Expect = 0.003
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAE----MTIQLLVQETPE--------APKNIRIT 65
+ L + +V +D+G C+ T H + +I+L +++ E K I +
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS 239
Query: 66 EESSRSLQ 73
S ++
Sbjct: 240 LGSRLTIP 247
Score = 33.9 bits (77), Expect = 0.050
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 8 REQVLEDGM---ISELGIANVLRQDSGTL-SCLATNYHGTAEMTIQL 50
R++ E+ L V R+D C+ N + +
Sbjct: 285 RQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 42.3 bits (99), Expect = 2e-05
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE 66
S + I ++ +D+GT C A+N +T V+ A + + E
Sbjct: 89 ASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV-RAQAVVLVLE 137
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 43.2 bits (102), Expect = 2e-05
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMT-IQLLVQETPEAPK 60
L+DG L I N +D G C+A N GT L V+ K
Sbjct: 156 PRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK 206
Score = 36.3 bits (84), Expect = 0.006
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 25/97 (25%)
Query: 3 SRYTIREQVLEDGMISELGIANV-LRQDSGTLSCLATNYHGTA-EMTIQLLVQETP---- 56
SRYT+ + + G IS L I V +D C+A N G A L + E
Sbjct: 52 SRYTV---LEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPA 108
Query: 57 ------EAPKNIRITEESSRSLQ----------ISWT 77
+ P I + + I W
Sbjct: 109 GFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 145
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 42.8 bits (101), Expect = 3e-05
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
+ + +EL + N++ D G C ATN G E L V
Sbjct: 144 KYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 41.3 bits (97), Expect = 1e-04
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 42/159 (26%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLVQETP------EAPK 60
R +L + L I N+ + D G C G + +++ P +
Sbjct: 50 RFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSF 106
Query: 61 NIRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP 110
N + ISW +++ + + + K I+
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISW----------------FRNGKLIEENE--KYILK 148
Query: 111 GSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQ 147
GS T T++ ++ Y R A N G E A LQ
Sbjct: 149 GSNTELTVRNIINSDGGPYVCR--ATNKAGEDEKQAFLQ 185
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 44.2 bits (104), Expect = 3e-05
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEES 68
EL I+N+ ++SG +C A N T + + E PK + S
Sbjct: 426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNS 476
Score = 40.7 bits (95), Expect = 3e-04
Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 21/160 (13%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ---- 73
EL I N+ +SG+ +C A N T + E PK IT +S ++
Sbjct: 248 QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPK-PFITSNNSNPVEDEDA 306
Query: 74 ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQ-----YQ 128
++ T + + +++ + + L++ S + TL LL T+ Y+
Sbjct: 307 VALTCEPEIQNTT---YLWWVNNQSLPVSPRLQL----SNDNRTLT-LLSVTRNDVGPYE 358
Query: 129 VRLLAENPLGMSET-GAELQASTLEEAPNGAPREVTSDPG 167
+N L + + L + P +P PG
Sbjct: 359 CG--IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396
Score = 39.6 bits (92), Expect = 8e-04
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
L IA + ++GT +C +N +I +
Sbjct: 604 QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 37.2 bits (86), Expect = 0.005
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 17/85 (20%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPE----APKNI 62
R Q+ L + NV R D+ C N + L V P+ +P +
Sbjct: 512 RLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDS 569
Query: 63 RITE----------ESSRSLQISWT 77
S+ S Q SW
Sbjct: 570 SYLSGANLNLSCHSASNPSPQYSWR 594
Score = 37.2 bits (86), Expect = 0.005
Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 31/178 (17%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLVQETP----- 56
Y+ RE + + L I N+++ D+G + E T Q V
Sbjct: 59 PAYSGREIIYPNA---SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSI 115
Query: 57 EAPKNIRITEESSRSLQ-ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
+ + + ++ + + T + + + +++ + + L++ S +
Sbjct: 116 SSNNSKPVEDKDAVAFTCEPETQDAT--------YLWWVNNQSLPVSPRLQL----SNGN 163
Query: 116 ATLQPLLPAT-----QYQVRLLAENPLGMSE-TGAELQASTLEEAPNGAPREVTSDPG 167
TL L T Y+ +NP+ L +AP +P + G
Sbjct: 164 RTLT-LFNVTRNDTASYKCE--TQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG 218
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 43.1 bits (101), Expect = 3e-05
Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 9/146 (6%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK-NI 62
R ++ G S + + N+ D GT C G A L V P + +
Sbjct: 71 RVHFTSNDVKSGDAS-INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV 129
Query: 63 RITEESSRSLQISWTAPYSGNTAITQYIIQ-YKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
+EE ++ G+ + + K S+ T P + + +++
Sbjct: 130 DGSEEIGNDFKLKCEPK-EGSLPLQ---FEWQKLSDS--QTMPTPWLAEMTSPVISVKNA 183
Query: 122 LPATQYQVRLLAENPLGMSETGAELQ 147
+N +G + L
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 42.4 bits (99), Expect = 5e-05
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ + N + SGT SC N G+ + ++L V
Sbjct: 176 PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 42.9 bits (101), Expect = 3e-05
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---EAPKN 61
+ G +L I + D+G C+ TN G E +L V E P +A +
Sbjct: 158 ERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAAH 212
Score = 39.4 bits (92), Expect = 5e-04
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 18/87 (20%)
Query: 8 REQVLEDG--MISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP----EAPK 60
+L G + R D G C+A NY G A L V + P
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS 119
Query: 61 NIRITEESSRSLQ-----------ISW 76
++ + ++ ISW
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISW 146
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 42.6 bits (100), Expect = 4e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
EL + D+G SC A N +GT + + ++
Sbjct: 171 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 41.1 bits (96), Expect = 1e-04
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMT--IQLLVQETPE---APKNIRITEESSRSL 72
+ + +V R+D+GT +C+ + G + ++L+V P T + L
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVL 127
Query: 73 Q 73
Sbjct: 128 T 128
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 43.3 bits (102), Expect = 4e-05
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ +D SEL I NV + D C+A N G + +I L V
Sbjct: 241 EEDDEKHIFSDDS--SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 42.2 bits (99), Expect = 8e-05
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 17/89 (19%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETP---EA 58
R ++ + L I N D+G C+ T GT T+ + + + A
Sbjct: 50 QRISVVWNDDDSST---LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA 106
Query: 59 PKNIRITEESSRSL----------QISWT 77
P E + I W
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Score = 38.7 bits (90), Expect = 0.001
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 20/87 (22%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHG--TAEMTIQLLVQETP-----EAPK 60
R VL + L I + + D GT C IQ++V P ++
Sbjct: 148 RFIVLSNNY---LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIV 204
Query: 61 NIRITEESSRSLQ----------ISWT 77
N S +L +SWT
Sbjct: 205 NATANLGQSVTLVCDADGFPEPTMSWT 231
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 42.6 bits (100), Expect = 4e-05
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
+Y + + + I E+ + + +D GT + + T T+ L+ + K
Sbjct: 48 PKYKMH--IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 105
Query: 63 RITE 66
Sbjct: 106 EFQR 109
Score = 39.9 bits (93), Expect = 3e-04
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
+DG I L I ++D+G + + G + ++L+ +
Sbjct: 166 FKDG-ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 41.2 bits (96), Expect = 4e-05
Identities = 9/77 (11%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 59 PKNIRITEESSRSLQISWTAPYSGNTAIT---QYIIQY-KSSEEMWPTQPLKIIVPGSQT 114
P N+ + ++ + W P + QY + + + + L + +
Sbjct: 21 PSNVTVRCNTTH-CLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLEN 79
Query: 115 SATLQPLLPATQYQVRL 131
P ++ V++
Sbjct: 80 RYNFPSSEPRAKHSVKI 96
Score = 40.1 bits (93), Expect = 9e-05
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 159 PREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELD 218
P VT + T L++WK P ++ L D YQ+ + +
Sbjct: 21 PSNVTVR---CNTTHCLVRWKQPR--TYQ-KLSYLDFQYQLDVHRKNTQPGTENLLINVS 74
Query: 219 NQYEGELRIPGLTPYTKYAIVVR-GYNSVGK-GPFSEPFIARTNEG 262
E P P K+++ +R + +SE +++G
Sbjct: 75 GDLENRYNFPSSEPRAKHSVKIRAADVRILNWSSWSEAIEFGSDDG 120
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 42.6 bits (100), Expect = 5e-05
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
S L I +GT C H I + V+E AP
Sbjct: 131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP 172
Score = 31.8 bits (72), Expect = 0.19
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE---MTIQLLVQ 53
FS Y + + SE I R+DSG C A G ++L V
Sbjct: 207 FSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
Score = 28.3 bits (63), Expect = 2.5
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ 73
I + DSG C + + +++ + TE +L+
Sbjct: 48 PSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALR 103
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
R V DG L + QD+GT C+A N G M L V+
Sbjct: 434 RLTVFPDGT---LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 41.8 bits (97), Expect = 1e-04
Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 16/117 (13%)
Query: 4 RYTIREQVLEDGMISE--LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
R+ R ++ D ++ L + +V + D G +C + + M + + PE P++
Sbjct: 68 RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127
Query: 62 IRITEESSRSLQ-------------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPL 105
+R+ + ++ ++W SG+ + ++ Y S+ Q L
Sbjct: 128 LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS-SGSHTEEETVLSYDSNMRSGKFQSL 183
Score = 37.5 bits (86), Expect = 0.003
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
+ + V D G +C + TI L V +
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 41.0 bits (96), Expect = 1e-04
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---EAPKNIRITEESSRSL 72
+S+L I ++ D+G CL H T + ++ P E P++ + + +L
Sbjct: 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNL 126
Query: 73 Q 73
Sbjct: 127 S 127
Score = 31.8 bits (72), Expect = 0.17
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
L + + + + SC A N G + +
Sbjct: 160 LHVPGL--NKTSSFSCEAHNAKGVTTSRTATITVLPQQ 195
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 41.6 bits (96), Expect = 1e-04
Identities = 32/273 (11%), Positives = 74/273 (27%), Gaps = 43/273 (15%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATN------------YHGTAEMTIQLLVQET 55
+VL G L I D+G +C T L Q+
Sbjct: 43 SSEVLGSG--KTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKE 100
Query: 56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQ------PLKIIV 109
P+ +R ++ W SS+ T ++
Sbjct: 101 PKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRG 160
Query: 110 PGSQTSATLQPLLPA--------TQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPRE 161
+ +++ + +V + A + L + + + + P+
Sbjct: 161 DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKP--DPPKN 218
Query: 162 VTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQY 221
+ P + + ++ + W+ P +W+ + + + + KS
Sbjct: 219 LQLKP-LKNSRQVEVSWEYPD--TWSTPHSYFSLTFCVQ---------VQGKSKREKKDR 266
Query: 222 E-GELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
+ + +I VR + +SE
Sbjct: 267 VFTDKTSATVICRKNASISVRAQDRYYSSSWSE 299
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 39.3 bits (92), Expect = 1e-04
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
R Q G L + D+G + A L+V+E
Sbjct: 55 RFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS----LIVRERS 99
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 39.2 bits (92), Expect = 2e-04
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
+Y++R+ +G + EL + N+ QDSG SC G + L V P P
Sbjct: 53 KYSLRQ----EGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 39.3 bits (92), Expect = 2e-04
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
R + +DG EL I ++ +D+G C+ G + L V+ P P
Sbjct: 63 RHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 38.8 bits (91), Expect = 2e-04
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+++EDG L + N +G +S A N A L V+E
Sbjct: 50 DCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAA----NLKVKE 92
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 40.9 bits (95), Expect = 2e-04
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
++L I V + + TL C TN G + + + V
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 32.4 bits (73), Expect = 0.12
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 18/109 (16%)
Query: 20 LGIANVLRQDSGTLSCLATNY-HGTAEMTIQLLVQETPEA---PKNIRITEESSRSL--- 72
L + + +D G +CL + G+ + I L V P+ + +++T E
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 140
Query: 73 --------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
QI+W +S + L I+VP SQ
Sbjct: 141 STGGRPPAQITW---HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186
Score = 30.1 bits (67), Expect = 0.76
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 18 SELGIANVLRQDSGTLSCLATN--YHGTAEMTIQLLVQ----ETPEAPKNIRITEESSRS 71
S + + D ++C + + +T+ L V + N ++ +
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEAT 236
Query: 72 LQ 73
L
Sbjct: 237 LT 238
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 40.3 bits (94), Expect = 2e-04
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
+ L I N+ +D G C A N G + ++ VQ
Sbjct: 165 AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 38.3 bits (89), Expect = 0.001
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
R +G L IANV D G SC ++ T + + +
Sbjct: 59 RFVSQTNG---NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 40.3 bits (93), Expect = 2e-04
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 65 TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPA 124
+ SL ISW A Y G ++ Y I Y + P Q + VP S ++AT+ L P
Sbjct: 113 VAATPTSLLISWDASYYG---VSYYRITYGETGGNSPVQ--EFTVPYSSSTATISGLKPG 167
Query: 125 TQYQVRLLAENPLGMSETGA 144
Y + + A + S +
Sbjct: 168 VDYTITVYAYSDYYGSHHYS 187
Score = 28.4 bits (62), Expect = 2.0
Identities = 26/153 (16%), Positives = 38/153 (24%), Gaps = 17/153 (11%)
Query: 109 VPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGV 168
+ Q + L+ + + N + +
Sbjct: 58 IEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAA-- 115
Query: 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
PT LLI W A + Y + Y + G+S S I
Sbjct: 116 -TPTSLLISWDASYYG-----VSYYRITYGETGGNSPVQEFTVPYS-------SSTATIS 162
Query: 229 GLTPYTKYAIVVRGYNSVGKGPFSEPF--IART 259
GL P Y I V Y+ P RT
Sbjct: 163 GLKPGVDYTITVYAYSDYYGSHHYSPISINYRT 195
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 40.9 bits (95), Expect = 3e-04
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 22 IANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
+ +GT C ATN GT +++ + E
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA 322
Score = 40.5 bits (94), Expect = 3e-04
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
+IS + +L+C+ + + ++ L VQ PE
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPE 233
Score = 29.7 bits (66), Expect = 1.1
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 3 SRYTIREQVLEDGM-ISELGIANVLRQDSGTLSCLATNY-HGTAEMTIQLLVQETPEAPK 60
+ Y R + L + ++ + +D G C + G E + L V P
Sbjct: 76 APYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWI 135
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 38.5 bits (90), Expect = 3e-04
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ R + +DG L ++V+++D G + AE L+V+E
Sbjct: 53 SFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE----LIVEE 99
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 40.7 bits (95), Expect = 3e-04
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETP---EAPKNIRITEESS 69
L L +D G +C N G + +++L V P + P+ + + ++
Sbjct: 270 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQ 325
Score = 36.8 bits (85), Expect = 0.006
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
R V + G L I V D G C ATN HG + V
Sbjct: 354 RATVTDSG----LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 35.7 bits (82), Expect = 0.014
Identities = 10/60 (16%), Positives = 13/60 (21%), Gaps = 4/60 (6%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPKNIRITE 66
++G L D G C A G A I +P
Sbjct: 55 AALRKDEG---SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKT 111
Score = 29.1 bits (65), Expect = 1.5
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 11/75 (14%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDS---GTLSCLATNYHGT-----AEMTIQLLVQE 54
+ + R DG L V ++D C A N E I+ + ++
Sbjct: 149 TDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKD 205
Query: 55 TPEAPKNIRITEESS 69
S
Sbjct: 206 NSGYKGEPVPQYVSK 220
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 40.1 bits (93), Expect = 3e-04
Identities = 26/208 (12%), Positives = 66/208 (31%), Gaps = 16/208 (7%)
Query: 58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSA 116
P N+ I + + + W + ++ K+ + I + +
Sbjct: 14 TPTNVTIESYNMNPI-VYWEYQIMPQV--PVFTVEVKNYGVKNSEWIDACINISHHYCNI 70
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPR-EVTSDPG-----VVD 170
+ P+ VR+ A S + + + G P+ ++ + +
Sbjct: 71 SDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKEEKQIMIDIFH 130
Query: 171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEG--ELRIP 228
P+ + + ++ Y Y + + + Y + + + D+ E +L IP
Sbjct: 131 PSVFVNGDEQEV--DYDPETTCYIRVYNVYVRMNGSEIQYKILTQKEDDCDEIQCQLAIP 188
Query: 229 GLTPYTKYAIVVRGYNSVG--KGPFSEP 254
+ ++Y + G V S+
Sbjct: 189 VSSLNSQYCVSAEGVLHVWGVTTEKSKE 216
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 38.1 bits (89), Expect = 4e-04
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA 58
++Y G L I N D A G + + +L V+ P +
Sbjct: 52 TKYIFEH----KGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPSS 99
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
Q ++G+ L I+ + + DS T +C A+ LLVQ P
Sbjct: 55 QPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ----LLVQGRRSGPS 101
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 37.8 bits (88), Expect = 5e-04
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
L + +V+ D G +C+ N +G+ T L V
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 37.7 bits (88), Expect = 5e-04
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
R ++ +G L I + D+ S + T +A++++ ++ P
Sbjct: 54 RYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVD--LKSGP 100
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 38.7 bits (90), Expect = 6e-04
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT--AEMTIQLLVQETPEAPK 60
++ ++G L I ++ D + G E L +QE PK
Sbjct: 59 TYKLFKNGT---LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK 110
Score = 27.2 bits (60), Expect = 5.3
Identities = 5/37 (13%), Positives = 7/37 (18%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
+ S C A N + E
Sbjct: 145 QRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPE 181
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 39.1 bits (91), Expect = 7e-04
Identities = 6/52 (11%), Positives = 17/52 (32%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESS 69
+ V + GT C N + + ++ + + E+++
Sbjct: 165 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
Score = 38.3 bits (89), Expect = 0.001
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPKNIRITEES 68
+ + +G SEL V +D+G C N QL V + PE+ +
Sbjct: 57 KEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 69 SR 70
S+
Sbjct: 117 SK 118
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 39.4 bits (91), Expect = 7e-04
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 18 SELGIANVLRQDSGTL-SCLATNYHGTAEMTIQLLVQ 53
+ L NV + G +C NY+ +T ++++
Sbjct: 293 ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 35.2 bits (80), Expect = 0.017
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
L I N +DSG C + I + +
Sbjct: 182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220
Score = 31.7 bits (71), Expect = 0.25
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 20 LGIANVLRQDSGTL-SCLATNYHG-TAEMTIQLLVQETP---EAPKNIRITEESSRSLQ 73
L IAN DS C T +G + ++ +++ P + ++ L
Sbjct: 91 LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 39.1 bits (90), Expect = 7e-04
Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 3/52 (5%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
S R L I D+G + C G + + +
Sbjct: 201 SEIAGRASFSGAR---NLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 31.0 bits (69), Expect = 0.29
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH-----GTAEMTIQLLVQETP 56
F + R V + L + +V QD G C + G ++ L V
Sbjct: 75 FGDFLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT 133
Query: 57 EAPKNIRITEES 68
+ T E
Sbjct: 134 PSNNVHVSTAEV 145
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 39.3 bits (91), Expect = 8e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHG--TAEMTIQLLVQETPE 57
S L I + +DSGT +C T E I + V E+
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283
Score = 32.0 bits (72), Expect = 0.15
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMT---IQLLVQETPEAPKNIRI 64
+ + S L + N+ D+G C + G + + V +
Sbjct: 41 MAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDA 100
Query: 65 TEE 67
E
Sbjct: 101 EEL 103
Score = 28.9 bits (64), Expect = 1.5
Identities = 8/99 (8%), Positives = 23/99 (23%), Gaps = 16/99 (16%)
Query: 25 VLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA------PKNIRITEESSRSL------ 72
+ + C T + + + + + + + +L
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIG 207
Query: 73 ----QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI 107
WT P + + + + + L I
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHI 246
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 39.1 bits (90), Expect = 8e-04
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
+R + + VL L D+G +C+ N +++ L V + +
Sbjct: 72 NRISKEKDVLW--------FRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSP 123
Query: 63 RITEESSRSL 72
+
Sbjct: 124 MKLPVHKLYI 133
Score = 36.4 bits (83), Expect = 0.008
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTL-SCLATNYHGTAEMTIQLLVQETP 56
+ + ++ L I V +D C A + G ++ +
Sbjct: 280 INESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPA 335
Score = 32.9 bits (74), Expect = 0.098
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 20 LGIANVLRQDSGTLSCLATNYH----GTAEMTIQLLVQETPE 57
L L ++G +C+ T T+ + V +P+
Sbjct: 179 LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPK 220
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 37.4 bits (87), Expect = 9e-04
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
+ ++ + L + V +DSG C + + V E P +RI
Sbjct: 58 ALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPP-----VRIIYS 108
Query: 68 SSRS 71
S
Sbjct: 109 GPSS 112
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 38.9 bits (90), Expect = 0.001
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
L +DSG C+ N + I E
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNL 103
Score = 35.1 bits (80), Expect = 0.019
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEM----TIQLLVQETPEAPK 60
L + NV + G +C A+ + + I+ + E + +
Sbjct: 164 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTR 208
Score = 34.7 bits (79), Expect = 0.021
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 13 EDGMISELGIANVLRQD-SGTLSCLATNYHGTAEMTIQLLV 52
+I+ L I+ + + +C A N HG IQL+
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 39.1 bits (90), Expect = 0.001
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 22 IANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
V R GT C A + G + + V
Sbjct: 417 SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 28.3 bits (62), Expect = 2.7
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSG--TLSCLATNYHGTAEMTIQLLVQETP 56
+ + S +V +D G L+C + + E + + P
Sbjct: 230 QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284
Score = 27.5 bits (60), Expect = 5.9
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 28 QDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
Q+ C + G + L V TPE +
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVE 90
Score = 26.8 bits (58), Expect = 8.1
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEM----TIQLLVQETP-----EAPKNIRITEES 68
++L + + + SC AT + T +L V P + P N E S
Sbjct: 327 AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENS 386
Query: 69 SRSLQISWTA 78
++
Sbjct: 387 QQTPMCQAWG 396
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 38.5 bits (89), Expect = 0.001
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPKN 61
R + ++ S L I + R+D+G C +N +I+L + P +
Sbjct: 155 RMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHHHH 207
Score = 33.1 bits (75), Expect = 0.054
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHG-TAEMTIQLLVQETPEA----P 59
Y+ RE + +G L + +D G + T+ + + T++ V +
Sbjct: 61 YSGREIIYSNG---SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV 117
Query: 60 KNIRITEESSRSLQI 74
N + E S +L
Sbjct: 118 TNTTVKELDSVTLTC 132
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 37.1 bits (86), Expect = 0.001
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 8 REQVLEDG--MISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP 56
+L G + R D G C+A NY G A L V
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 36.7 bits (85), Expect = 0.001
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
+R I + +E + + + DSG +C+ ++ G+ + V
Sbjct: 53 NRTRITGEEVE--------VRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 36.6 bits (85), Expect = 0.001
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
V DG L + QDSG C + VQ+ P P
Sbjct: 55 LLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFG----VTVQD-PSGP 101
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 36.2 bits (84), Expect = 0.002
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
R TI G +L I +V +D G + + Y + + +L E
Sbjct: 52 KRITISH----VGRFHKLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLEIK 99
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA 58
R + + G I +L IAN L +D G Y+ T ++ V P +
Sbjct: 50 DRLKVVQ----KGRIHKLVIANALTEDEGDYVFAPDAYNVTL--PAKVHVISGPSS 99
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
RY++++ DG EL I ++ D+G SC+ G + L V+ P
Sbjct: 52 RYSLKQ----DGTRCELQIHDLSVADAGEYSCMC----GQERTSATLTVRALP 96
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 35.4 bits (82), Expect = 0.002
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
+ V + GT C N + + ++ +
Sbjct: 50 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 37.3 bits (86), Expect = 0.002
Identities = 7/54 (12%), Positives = 16/54 (29%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
+ T E+ + + + + C T +L++ E P
Sbjct: 160 GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP 213
Score = 30.0 bits (67), Expect = 0.74
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 3 SRYTIREQVLEDGMISE---LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE---TP 56
S Y R ++L+D + L I +V QD+G C+ +Y G I + V
Sbjct: 62 SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKI 120
Query: 57 EAPKNIRITEESSRSL----------QISWT 77
+ S L ++ WT
Sbjct: 121 NQRILVVDPVTSEHELTCQAEGYPKAEVIWT 151
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 37.2 bits (85), Expect = 0.002
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESS 69
V D S L + N +GT C+ + T + T+QLLV P +
Sbjct: 51 AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLT-VSPAALVP 109
Query: 70 RSLQISWTAP 79
+++ TA
Sbjct: 110 GDPEVACTAH 119
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 37.3 bits (86), Expect = 0.003
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 22 IANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
V R GT C A + G + + V
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 28.9 bits (64), Expect = 1.5
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 22 IANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
+ + L+C + + E + + P
Sbjct: 65 SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 100
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 35.4 bits (82), Expect = 0.003
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
S+Y G L I+ D C+ + E L V+E
Sbjct: 61 SKYIFES----IGAKRTLTISQCSLADDAAYQCVVGGEKCSTE----LFVKE 104
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 35.0 bits (81), Expect = 0.004
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
++Y + +G L + V D G+ + +A G++++ L V E
Sbjct: 52 NKYGLAT----EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVIE 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.005
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 80/230 (34%)
Query: 2 FSRYTIREQVLED------G----MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL 51
+ ++ +LED G M L I+N+ ++ TN H A +++
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPM---LSISNLTQEQVQDY-VNKTNSHLPAGKQVEIS 369
Query: 52 VQETP----------------------EAPKNI---RITEESSRSLQISW-----TAPY- 80
+ +AP + RI S R L+ S +P+
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSERKLKFSNRFLPVASPFH 428
Query: 81 SG--NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL--------------LP- 123
S A + + + ++I V + + L+ L LP
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 124 ----ATQYQV-RLLAENPLGMSE-----------TGAEL-QASTLEEAPN 156
TQ++ +L P G S TG + A TL+ P+
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 35.4 bits (81), Expect = 0.018
Identities = 46/316 (14%), Positives = 87/316 (27%), Gaps = 91/316 (28%)
Query: 32 TLSCLATNYHGTAEMTI-----------QL---LVQETPEAPKNIRITEESSRSLQISWT 77
TLS HG+ E + QL + PE + +E + ++
Sbjct: 10 TLS------HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL--V 61
Query: 78 APYSGNTAITQYIIQYKSSEEMWPTQP-LKIIVPGSQTS-----------ATLQPLLPAT 125
+ G Y+ ++ L + + + A L T
Sbjct: 62 GKFLG------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 126 Q----------YQVRLLAENPLGMSETGAELQASTLEEAP-------NGAP-------RE 161
R++A+ P A +A A G R+
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 162 V--TSDPGVVD----PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS------LALSS 209
+ T V D E L + ++ G ++ + + S+ L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 210 YTLKSVELDN--QYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD-FL- 265
+ + + Y ++ G TP + ++G +G + IA T+ + F
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSY-LKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 266 -------FLF---CAC 271
LF C
Sbjct: 295 SVRKAITVLFFIGVRC 310
Score = 28.1 bits (62), Expect = 3.6
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 12 LEDGMISEL----GIA--NVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI--R 63
+E + E+ G+ + +D S NY A ++ + EA + + R
Sbjct: 1779 IESLV--EVVFYRGMTMQVAVPRDELGRS----NYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 64 ITEESSRSLQISWTAPYSGNTAITQYII 91
+ + + ++I Y N QY+
Sbjct: 1833 VGKRTGWLVEI---VNY--NVENQQYVA 1855
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 34.7 bits (80), Expect = 0.005
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQ 49
+V G L + + ++G SC A + + +
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQVA 97
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 35.7 bits (82), Expect = 0.006
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 8 REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
++L +G +L I N+ R DSGT + + +GT + L ++ K + E
Sbjct: 54 AFEILANG---DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWEC 110
Query: 68 SSRSL----------QISWTAPYSGNTAIT 87
S+ +L ++ Y G +
Sbjct: 111 SNATLTCEVLEGTDVELKL---YQGKEHLR 137
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 34.3 bits (79), Expect = 0.008
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
I Q G L + + +DSGT+ A G + L V E P
Sbjct: 58 ELNEIDAQ---PGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP 104
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 35.4 bits (81), Expect = 0.009
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA--PKN 61
R T+ E+ L G I +V +DSG CL + + V+ + +
Sbjct: 54 RATLLEEQLPLGKAL-FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRI 112
Query: 62 IRITEESSRSL----------QISWT 77
+ + L ++SW
Sbjct: 113 LEVPGTGEVQLTCQARGYPLAEVSWQ 138
Score = 30.0 bits (67), Expect = 0.66
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
+G+ + + Q S SC+ N H + + E
Sbjct: 152 PEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRME 196
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 36.1 bits (83), Expect = 0.011
Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 20/129 (15%)
Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL---SSY 210
+ AP+++ D + +++ WKAP ++ Y + + A ++
Sbjct: 33 SSLDAPQQLQVPTLAYDESSIVLVWKAPED---TRKIVDYQI-FSAGKLLGKASDNNDNF 88
Query: 211 TLKSVELDNQYEGELR------------IPGLTPYTKYAIVVRGYNSVGK-GPFSEPFIA 257
+ +D+ Y + + GL P T Y V+ + G S+P A
Sbjct: 89 SPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADGSLSVASKPITA 148
Query: 258 RTNEGDFLF 266
+T+ +
Sbjct: 149 KTSAKPQIV 157
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 33.5 bits (77), Expect = 0.012
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMT--IQLLVQE 54
L + + QD GT SC+AT+ + + + + + E
Sbjct: 57 PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 35.6 bits (81), Expect = 0.012
Identities = 3/64 (4%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE---TPEAPKNIRITEESSRSLQI 74
++ I +G + + + + + T + +
Sbjct: 145 QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISL 204
Query: 75 SWTA 78
++
Sbjct: 205 NYVV 208
Score = 34.4 bits (78), Expect = 0.029
Identities = 17/155 (10%), Positives = 44/155 (28%), Gaps = 15/155 (9%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE------APKNIRITEESSRS 71
+ L +A+ +++G+ + + ++ + E E P++ ++ ++
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 72 LQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL 131
L + G T Y + Y S+ + T+Q +
Sbjct: 112 LHATVKFS-GGKTPADNYELHYSWSKGEDVI--------DTTQDITIQEFTADKNGVYTV 162
Query: 132 LAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
S A + + E +
Sbjct: 163 KVWGESEDSAASASTKIMLATMNVDQDVVESKTVA 197
Score = 28.3 bits (62), Expect = 2.6
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA 58
+ DG L + D+ C+A Y + T+++ + +
Sbjct: 253 SITPDG---HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKC 298
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 34.9 bits (80), Expect = 0.013
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP 56
+ I N +DSGT C + E + + V + P
Sbjct: 134 HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 30.6 bits (69), Expect = 0.31
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ 73
S L I N +DSG C + + + +++ + E L+
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLR 106
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 33.8 bits (77), Expect = 0.019
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP-----E 57
S+Y + + + NV QD G CL + + ++++V T
Sbjct: 54 SKYQLLHHSANQL---SITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVLATMKGEFCR 109
Query: 58 APKNIR 63
P + R
Sbjct: 110 YPSHWR 115
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 33.7 bits (77), Expect = 0.021
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
R L+ G S + + N+ D GT C G A I L+V
Sbjct: 76 RVHFTSNDLKSGDAS-INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 32.4 bits (73), Expect = 0.039
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTA 44
+ L + NV G C+ +N+ G++
Sbjct: 76 TILRLRNVEFTSEGXYQCVISNHFGSS 102
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.0 bits (75), Expect = 0.042
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
R + ++ + +G ++ L I NV D G +C ++ E ++L V++
Sbjct: 72 RTELLKESIGEGKVA-LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 32.6 bits (74), Expect = 0.046
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNY-HGTAEMTIQLLVQETPEAPKN 61
+ R ++ + ++ D+G C+ Y GT I L V E+ A
Sbjct: 59 PSFKDRVAPGPGLGLT---LQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHG 115
Query: 62 IR 63
R
Sbjct: 116 AR 117
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 32.6 bits (74), Expect = 0.075
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
L I N+ D + N T L V E P I E S + T
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTM--KFFLYVLEMVSKPM---IYWECS---NATLTCE 113
Query: 80 YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQ 119
T + + Y+ E + + + + A +
Sbjct: 114 VLEGTDVE--LKLYQGKEHLRSLRQKTMSYQWTNLRAPFK 151
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 32.5 bits (74), Expect = 0.076
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAP 59
S+ I +DSG+ C T+Q+ + +
Sbjct: 137 SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVS 179
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 33.4 bits (75), Expect = 0.086
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
R + Q + S + I + D+G C A + + + L V +
Sbjct: 171 GRIRLDIQGTGQLLFS-VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELV-- 227
Query: 63 RITEESSRSLQISWTAPYSGNT 84
S + + +
Sbjct: 228 YEDLRGSVTFHCALGPEVANVA 249
Score = 32.3 bits (72), Expect = 0.16
Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 26/199 (13%)
Query: 4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK--N 61
R ++ E+ + + + +D+G CL +++ P N
Sbjct: 394 RLSLLEEP--GNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGN 451
Query: 62 IRITEESSRSLQISWTAPYSGNTAIT----QYIIQYKSSEEMWPTQPLKIIVPGSQTSA- 116
+ + + + +S Q S++ P++ S+ +
Sbjct: 452 VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSL 511
Query: 117 TLQPLLP--ATQYQVRLLAENPLGMSETGA-ELQASTLEEAPNGAPREVTSDPGVVDPTE 173
TL + Y + ET A + +EE R+V+ P E
Sbjct: 512 TLNLVTRADEGWYWCG--VKQGHFYGETAAVYV---AVEERKAAGSRDVSLAKADAAPDE 566
Query: 174 LLI---------KWKAPPR 183
++ K PR
Sbjct: 567 KVLDSGFREIENKAIQDPR 585
Score = 32.3 bits (72), Expect = 0.19
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE-------T 55
R + Q + + I + ++D+G C A + E + Q
Sbjct: 277 GRILLNPQ--DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTI 334
Query: 56 PEAPKNIRITEESSRSLQ 73
P +P ++ SS ++
Sbjct: 335 PRSPTVVKGVAGSSVAVL 352
Score = 30.4 bits (67), Expect = 0.67
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAP 59
R + + + IA + + DSG C + L V + P
Sbjct: 62 GRANLTNFP--ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDT 119
Query: 60 KNIRITEESSRSLQISWTAPYS 81
K + + ++ + +
Sbjct: 120 KVYTVDLGRTVTINCPFKTENA 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.10
Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 64/193 (33%)
Query: 52 VQETPEAPKNIRITEE----------SSRSLQISWTAPYSGNTAITQYI-----IQYKSS 96
++ + PK+I EE S +L++ WT + +++ I YK
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-- 92
Query: 97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQV---RLLAENPLGMSETGAELQASTLEE 153
+ P+K + QP + Y RL +N +
Sbjct: 93 ---FLMSPIK--------TEQRQPSMMTRMYIEQRDRLYNDNQV---------------- 125
Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLL-GYDVGYQISSG-SSLALSSYT 211
A V+ + + L++ + VL+ G +G SG + +AL
Sbjct: 126 ---FAKYNVSRLQPYLKLRQALLELRPAK-----NVLIDG-VLG----SGKTWVALD--V 170
Query: 212 LKSVELDNQYEGE 224
S ++ + + +
Sbjct: 171 CLSYKVQCKMDFK 183
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 30.9 bits (69), Expect = 0.16
Identities = 7/36 (19%), Positives = 10/36 (27%)
Query: 19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
EL I V+ D G + V+
Sbjct: 81 ELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 31.3 bits (71), Expect = 0.19
Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQ 53
I SG C + + + VQ
Sbjct: 134 PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 28.2 bits (63), Expect = 2.0
Identities = 7/56 (12%), Positives = 17/56 (30%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ 73
DSG +C + + + +L + ++ E + L+
Sbjct: 51 QPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLR 106
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 30.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNY-HGTAEMTIQLLVQETPEAPK 60
R + L +A D C+ GTAE T +L V PEA +
Sbjct: 61 MHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE 120
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 30.2 bits (68), Expect = 0.40
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQE 54
S+ I +DSG+ C T+ + + +
Sbjct: 137 SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174
Score = 27.1 bits (60), Expect = 4.9
Identities = 9/56 (16%), Positives = 16/56 (28%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ 73
S I DSG C + + +++ + EE L+
Sbjct: 54 SSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLR 109
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.8 bits (69), Expect = 0.45
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
++ I +L DSG C G E + V+ P
Sbjct: 381 HFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVLP 423
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I
domain, integrin, allosteric mobility, cell adhesi
immune system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 30.0 bits (67), Expect = 0.55
Identities = 6/55 (10%), Positives = 17/55 (30%)
Query: 6 TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
++R + G+ +R+ C T + + + P+ +
Sbjct: 39 SLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPDRVE 93
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 29.2 bits (65), Expect = 0.55
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
SRY ++ + +G +S L I N + D G C+ + L V+ P+
Sbjct: 61 SRYQLKGN-ISEGNVS-LTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPEL-VPR 115
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 29.9 bits (67), Expect = 0.65
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESS 69
L I NV ++D G + + I + V E P I E S
Sbjct: 71 LRIYNVSKEDRGDYYMRMLH-ETEDQWKITMEVYEMVSKPM---IYWECS 116
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 30.1 bits (67), Expect = 0.70
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
R +I + G + L I NV DSG C + + ++L V
Sbjct: 68 RGRTSILRDGITAGKAA-LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV 126
Query: 62 IRITEESS 69
+
Sbjct: 127 DVKGYKDG 134
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 29.6 bits (66), Expect = 0.73
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
+ R + L ++N+ +D+G+ + + L + +
Sbjct: 58 PKQGKRLNFTQSY---SLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQ-- 112
Query: 63 RITEESSRS 71
+T S
Sbjct: 113 -VTNHSQLF 120
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNYHG-TAEMTIQLLVQETPEAPK 60
L I+ V ++D+ T G E I+L V + P
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPV 116
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 29.0 bits (64), Expect = 1.3
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 18 SELGIANVLRQDSGTLSCLATNYHG--TAEMTIQLLV 52
SEL + L+C T E T+QL V
Sbjct: 177 SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 28.0 bits (62), Expect = 1.4
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 8 REQVLEDGMISELGIANVLRQDSGT-LSCLATNYHGTAEMTIQ 49
R ++ + G+ L + V QDSG + +A +TIQ
Sbjct: 62 RYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAALTIQ 104
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 28.7 bits (63), Expect = 1.4
Identities = 5/69 (7%), Positives = 14/69 (20%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
+ + + G C + + + + + +
Sbjct: 51 WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDG 110
Query: 80 YSGNTAITQ 88
ITQ
Sbjct: 111 NEEMGGITQ 119
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 28.6 bits (63), Expect = 1.4
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
+ I+NV D G +C + V P+ P
Sbjct: 105 ISISNVALADEGEYTCSIFT-MPVRTAKSLVTVLGIPQKPI 144
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 28.0 bits (62), Expect = 1.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 20 LGIANVLRQDSGTLSCLATNY--HGTAEMTIQLLVQETP 56
+ I N+ D+GT +C N + L V E
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 28.3 bits (63), Expect = 2.1
Identities = 7/51 (13%), Positives = 13/51 (25%)
Query: 25 VLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQIS 75
+L L+C T + +T A + + S
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSS 66
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed
parallel beta helix fold; 1.45A {Erwinia chrysanthemi}
PDB: 3b8y_A* 3b90_A
Length = 344
Score = 28.3 bits (62), Expect = 2.5
Identities = 12/124 (9%), Positives = 35/124 (28%), Gaps = 9/124 (7%)
Query: 50 LLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIV 109
L + A + + + S + W+ + + + + Y+ + + ++
Sbjct: 11 LTLAAPSFAAQTTLMLSQKSDVNYLGWSTD---ESKVARQEV-YRGTTSNPDLRERIAVL 66
Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV 169
+ Y + + A++ ++ + APN P
Sbjct: 67 DAETRTFKDADTNSGLNYWYWVDVVSE-----NQAQVVSNAVTTAPNAGPLRAAKASSEC 121
Query: 170 DPTE 173
P
Sbjct: 122 KPGA 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.2
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 145 ELQASTLEEAPNGAP 159
+LQAS A + AP
Sbjct: 24 KLQASLKLYADDSAP 38
Score = 26.1 bits (56), Expect = 8.7
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 37/65 (56%)
Query: 88 QYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQ 147
Q + + ++S LK+ S PA LA ++
Sbjct: 20 QALKKLQAS--------LKLYADDSA---------PA-------LA------------IK 43
Query: 148 ASTLE 152
A T+E
Sbjct: 44 A-TME 47
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 28.2 bits (61), Expect = 3.5
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESS 69
L I N+ DSG CL+ + Q++ + E + +
Sbjct: 588 LLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAKHVLEVKVVPKPVVAPT 636
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 26.9 bits (59), Expect = 4.2
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 20 LGIANVLRQDSGTLSCLATNY-HGTAEMTIQLLV 52
L + + +D G +C + G+ L V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 27.3 bits (60), Expect = 4.3
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 23/109 (21%)
Query: 2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN-----YHGTAEMTIQLLVQETP 56
+ Y R +S + I + D GT C+ + + L V+
Sbjct: 50 WPEYKNRTIFDITNNLS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF 108
Query: 57 EAPK--NIRITEESSRSL-----------QISWT----APYSGNTAITQ 88
P + I + R + +SW + NT ++Q
Sbjct: 109 PTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ 157
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 27.3 bits (60), Expect = 4.5
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 25 VLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRS-------LQISWT 77
+ L CL N + +++ +++ + + +E + +S
Sbjct: 25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVS-- 82
Query: 78 APYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQ 126
+ ++ + E P G T + P P +
Sbjct: 83 --TQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPE 129
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 26.5 bits (59), Expect = 8.3
Identities = 7/61 (11%), Positives = 17/61 (27%)
Query: 11 VLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSR 70
+L +G G + L+ S + + + E + ++
Sbjct: 230 ILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGDAPV 289
Query: 71 S 71
S
Sbjct: 290 S 290
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 26.4 bits (57), Expect = 8.9
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 9 EQVLEDGMISELGIANVLR-QDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
Q L L + + +DSG C + + ++ V +A K+ ++
Sbjct: 35 GQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDD 94
Query: 68 SSRSLQISWTAP 79
+ + +
Sbjct: 95 AKKDDAKKDGSQ 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.380
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,978,884
Number of extensions: 224643
Number of successful extensions: 1389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 605
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.8 bits)