BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy664
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/353 (71%), Positives = 294/353 (83%), Gaps = 17/353 (4%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLID 47
+QTR+VI AGAVP+FI+LL S ED V +V + LD NIL PL+
Sbjct: 98 LQTRIVIQAGAVPIFIELLSSEFED-VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ 156
Query: 48 --KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAI 105
+NRL+M RN+VW LSNLCRGK+PPP+FAKV+P L LS LLF +D DVLADACWA+
Sbjct: 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWAL 216
Query: 106 SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCS 165
SYLSDGPN+KIQAVIDAGVCRRLVELLMH+ +KVVS ALRAVGNIVTGDD QTQVILNCS
Sbjct: 217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 276
Query: 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRK 225
AL LLHL+ SPKESI+KEACW +SNITAGNR QIQ VIDANIFP+LI ILQ AEF+TRK
Sbjct: 277 ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336
Query: 226 EAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
EAAWAITNATSGG+ +QI+YL++ GCI+P C+LLT++D+KI+QVALNGLENIL+LGE+EA
Sbjct: 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEA 396
Query: 286 KQTGS-VNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEEDT 337
K+ G+ +NPY LIEE YGLDKIEFLQSHEN EIYQKAFD+IEHYFG+E+ED+
Sbjct: 397 KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 108 LSDGPNEKIQAVIDA-GVCRRLVELLMHDQHKVVS-AALRAVGNIVTGDDQQTQVILNCS 165
LS PN I VI GV R VE L ++ + + + NI +G+ QT++++
Sbjct: 48 LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG 107
Query: 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT-R 224
A+ + L+ S E ++++A WA+ NI + V+D NI P L+++ K T
Sbjct: 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167
Query: 225 KEAAWAITNATSGGTP 240
+ A WA++N G +P
Sbjct: 168 RNAVWALSNLCRGKSP 183
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 1/191 (0%)
Query: 48 KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
K K ++ S WVL+N+ G + A A+ LL DV A WA+
Sbjct: 74 KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGN 133
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELL-MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSA 166
++ V+D + L++L ++ + A+ A+ N+ G +
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193
Query: 167 LMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE 226
L L L+ + +ACWA+S ++ G +IQAVIDA + L+E+L ++K
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253
Query: 227 AAWAITNATSG 237
A A+ N +G
Sbjct: 254 ALRAVGNIVTG 264
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 100 DACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159
++ W ++ ++ G + + + VI AG +ELL + V A+ A+GNI
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 160 VILNCSALMCLLHLI-QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218
+L+C+ L LL L + + ++ + A WA+SN+ G + + L +L
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 203
Query: 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
++ +A WA++ S G D+I+ +I G ELL D K++ AL + NI+
Sbjct: 204 SDTDVLADACWALS-YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/353 (71%), Positives = 294/353 (83%), Gaps = 17/353 (4%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLID 47
+QTR+VI AGAVP+FI+LL S ED V +V + LD NIL PL+
Sbjct: 95 LQTRIVIQAGAVPIFIELLSSEFED-VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ 153
Query: 48 --KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAI 105
+NRL+M RN+VW LSNLCRGK+PPP+FAKV+P L LS LLF +D DVLADACWA+
Sbjct: 154 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWAL 213
Query: 106 SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCS 165
SYLSDGPN+KIQAVIDAGVCRRLVELLMH+ +KVVS ALRAVGNIVTGDD QTQVILNCS
Sbjct: 214 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 273
Query: 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRK 225
AL LLHL+ SPKESI+KEACW +SNITAGNR QIQ VIDANIFP+LI ILQ AEF+TRK
Sbjct: 274 ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 333
Query: 226 EAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
EAAWAITNATSGG+ +QI+YL++ GCI+P C+LLT++D+KI+QVALNGLENIL+LGE+EA
Sbjct: 334 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEA 393
Query: 286 KQTGS-VNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEEDT 337
K+ G+ +NPY LIEE YGLDKIEFLQSHEN EIYQKAFD+IEHYFG+E+ED+
Sbjct: 394 KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 446
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 108 LSDGPNEKIQAVIDA-GVCRRLVELLMHDQHKVVS-AALRAVGNIVTGDDQQTQVILNCS 165
LS PN I VI GV R VE L ++ + + + NI +G+ QT++++
Sbjct: 45 LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG 104
Query: 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT-R 224
A+ + L+ S E ++++A WA+ NI + V+D NI P L+++ K T
Sbjct: 105 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 164
Query: 225 KEAAWAITNATSGGTP 240
+ A WA++N G +P
Sbjct: 165 RNAVWALSNLCRGKSP 180
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 1/191 (0%)
Query: 48 KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
K K ++ S WVL+N+ G + A A+ LL DV A WA+
Sbjct: 71 KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGN 130
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELL-MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSA 166
++ V+D + L++L ++ + A+ A+ N+ G +
Sbjct: 131 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 190
Query: 167 LMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE 226
L L L+ + +ACWA+S ++ G +IQAVIDA + L+E+L ++K
Sbjct: 191 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 250
Query: 227 AAWAITNATSG 237
A A+ N +G
Sbjct: 251 ALRAVGNIVTG 261
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 100 DACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159
++ W ++ ++ G + + + VI AG +ELL + V A+ A+GNI
Sbjct: 81 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 140
Query: 160 VILNCSALMCLLHLI-QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218
+L+C+ L LL L + + ++ + A WA+SN+ G + + L +L
Sbjct: 141 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 200
Query: 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
++ +A WA++ S G D+I+ +I G ELL D K++ AL + NI+
Sbjct: 201 SDTDVLADACWALS-YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 259
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 254/377 (67%), Gaps = 21/377 (5%)
Query: 3 TRMVIDAGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLIDK-- 48
T++VID GAVP+F++LL S +D P + L N L PL+ +
Sbjct: 115 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 174
Query: 49 PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108
+LSM+RN+ W LSN CRGK P P F + PAL L+RL+ D +VL DACWA+SYL
Sbjct: 175 EHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYL 233
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168
SDG N+KIQAVI+AGVC RLVELL+H V+ ALR VGNIVTGDD QTQ I++ AL
Sbjct: 234 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALP 293
Query: 169 CLLHLI-QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
CLL L+ Q+ K+SI+KEACW +SNITAGN+ QIQAVI+A I L+ +LQ AEF +KEA
Sbjct: 294 CLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 353
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE-EEAK 286
AWAI+NATSGG+ DQI+YL+ +GCI+P C+LL D +I+ V L GLENILK+GE ++
Sbjct: 354 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTL 413
Query: 287 QTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEEDTRVAPCVTHD 346
G VN + +I+E GL+KIE LQSH+N EIY+KA I+E Y+ EE+DT A V
Sbjct: 414 AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTV--- 470
Query: 347 ASGAQEFTFAGATQGGA 363
+ Q TF GGA
Sbjct: 471 -AAPQGATFDFGQGGGA 486
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 184 EACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQI 243
EA WA++NI +G + + VID P +++L + R++A WA+ N +G +P
Sbjct: 99 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGN-VAGDSPKCR 157
Query: 244 RYLIQQGCIEPF 255
++ G + P
Sbjct: 158 DLVLANGALLPL 169
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/377 (52%), Positives = 254/377 (67%), Gaps = 21/377 (5%)
Query: 3 TRMVIDAGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLIDK-- 48
T++VID GAVP+F++LL S +D P + L N L PL+ +
Sbjct: 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 212
Query: 49 PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108
+LSM+RN+ W LSN CRGK P P F + PAL L+RL+ D +VL DACWA+SYL
Sbjct: 213 EHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYL 271
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168
SDG N+KIQAVI+AGVC RLVELL+H V+ ALR VGNIVTGDD QTQ I++ AL
Sbjct: 272 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALP 331
Query: 169 CLLHLI-QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
CLL L+ Q+ K+SI+KEACW +SNITAGN+ QIQAVI+A I L+ +LQ AEF +KEA
Sbjct: 332 CLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE-EEAK 286
AWAI+NATSGG+ DQI+YL+ +GCI+P C+LL D +I+ V L GLENILK+GE ++
Sbjct: 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTL 451
Query: 287 QTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEEDTRVAPCVTHD 346
G VN + +I+E GL+KIE LQSH+N EIY+KA I+E Y+ EE+DT A V
Sbjct: 452 AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTV--- 508
Query: 347 ASGAQEFTFAGATQGGA 363
+ Q TF GGA
Sbjct: 509 -AAPQGATFDFGQGGGA 524
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 184 EACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQI 243
EA WA++NI +G + + VID P +++L + R++A WA+ N +G +P
Sbjct: 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGN-VAGDSPKCR 195
Query: 244 RYLIQQGCIEPF 255
++ G + P
Sbjct: 196 DLVLANGALLPL 207
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 248/358 (69%), Gaps = 18/358 (5%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHED----------QVTHPSVETMS--LDNNILYPLIDK- 48
QT++V+DA AVP+FIQLL + + V S + L N + P++
Sbjct: 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF 224
Query: 49 PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108
N+ S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISYL
Sbjct: 225 NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYL 284
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168
SDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 285 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP 344
Query: 169 CLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAA 228
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE+KT+KEA
Sbjct: 345 ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404
Query: 229 WAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK 286
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENILK+GE + +
Sbjct: 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 464
Query: 287 QTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE--DTRVAP 341
G ++N IE+ G++KI Q +EN +IY+KA+ IIE YFG EE+ D +AP
Sbjct: 465 ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAP 522
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVIDAGV 124
L R PP D A + L + P++L +A WA++ ++ G + + + V+DA
Sbjct: 115 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 174
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
++LL +V A+ A+GN+ +L C+A+ +L L S K S+ +
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 234
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244
A W +SN+ G + Q + + P+L +++ + +T +A WAI+ S G + I+
Sbjct: 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS-YLSDGPQEAIQ 293
Query: 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+I + ELL+ + AL + NI+
Sbjct: 294 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+QT++VI+AG +P LL SP E+ + + +
Sbjct: 332 LQTQVVINAGVLPALRLLLSSPKEN-----------------------------IKKEAC 362
Query: 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK---IQ 117
W +SN+ G T A + L +LL A+ +ACWAIS S G ++ I+
Sbjct: 363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 422
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
++ G + L +LL ++++ L A+ NI+
Sbjct: 423 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/378 (49%), Positives = 254/378 (67%), Gaps = 25/378 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLIDK 48
QT++V+DA AVP+FIQLL + +V ++ + L N + P++
Sbjct: 78 QTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 136
Query: 49 -PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
N+ S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISY
Sbjct: 137 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 196
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 197 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 256
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE KT+KEA
Sbjct: 257 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 316
Query: 228 AWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENILK+GE +
Sbjct: 317 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 376
Query: 286 KQTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE--DTRVAPC 342
+ G ++N IE+ G++KI Q +EN +IY+KA+ IIE YFG EE+ D +AP
Sbjct: 377 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQ 436
Query: 343 VTHDASG-----AQEFTF 355
+ G Q+F F
Sbjct: 437 NAGNTFGFGSNVNQQFNF 454
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVIDAGV 124
L R PP D A + L + P++L +A WA++ ++ G + + + V+DA
Sbjct: 28 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 87
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
++LL +V A+ A+GN+ +L C+A+ +L L S K S+ +
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 147
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244
A W +SN+ G + Q + + P+L +++ + +T +A WAI+ S G + I+
Sbjct: 148 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS-YLSDGPQEAIQ 206
Query: 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+I + ELL+ + AL + NI+
Sbjct: 207 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+QT++VI+AG +P LL SP E+ + + +
Sbjct: 245 LQTQVVINAGVLPALRLLLSSPKEN-----------------------------IKKEAC 275
Query: 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK---IQ 117
W +SN+ G T A + L +LL A+ +ACWAIS S G ++ I+
Sbjct: 276 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIR 335
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
++ G + L +LL ++++ L A+ NI+
Sbjct: 336 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 369
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 183/359 (50%), Positives = 248/359 (69%), Gaps = 20/359 (5%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLIDK 48
QT++V+DA AVP+FIQLL + +V ++ + L N + P++
Sbjct: 78 QTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 136
Query: 49 -PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
N+ S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISY
Sbjct: 137 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 196
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 197 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 256
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE KT+KEA
Sbjct: 257 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 316
Query: 228 AWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENILK+GE +
Sbjct: 317 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 376
Query: 286 KQTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE--DTRVAP 341
+ G ++N IE+ G++KI Q +EN +IY+KA+ IIE YFG EE+ D +AP
Sbjct: 377 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAP 435
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVIDAGV 124
L R PP D A + L + P++L +A WA++ ++ G + + + V+DA
Sbjct: 28 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 87
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
++LL +V A+ A+GN+ +L C+A+ +L L S K S+ +
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 147
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244
A W +SN+ G + Q + + P+L +++ + +T +A WAI+ S G + I+
Sbjct: 148 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS-YLSDGPQEAIQ 206
Query: 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+I + ELL+ + AL + NI+
Sbjct: 207 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+QT++VI+AG +P LL SP E+ + + +
Sbjct: 245 LQTQVVINAGVLPALRLLLSSPKEN-----------------------------IKKEAC 275
Query: 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK---IQ 117
W +SN+ G T A + L +LL A+ +ACWAIS S G ++ I+
Sbjct: 276 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIR 335
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
++ G + L +LL ++++ L A+ NI+
Sbjct: 336 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 369
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 345 bits (886), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/347 (51%), Positives = 242/347 (69%), Gaps = 18/347 (5%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLIDK 48
QT++V+DA AVP+FIQLL + +V ++ + L N + P++
Sbjct: 77 QTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 135
Query: 49 -PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
N+ S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISY
Sbjct: 136 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 195
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 196 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 255
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE+KT+KEA
Sbjct: 256 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 315
Query: 228 AWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENILK+GE +
Sbjct: 316 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 375
Query: 286 KQTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331
+ G ++N IE+ G++KI Q +EN +IY+KA+ IIE YFG
Sbjct: 376 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 422
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVIDAGV 124
L R PP D A + L + P++L +A WA++ ++ G + + + V+DA
Sbjct: 27 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 86
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
++LL +V A+ A+GN+ +L C+A+ +L L S K S+ +
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 146
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244
A W +SN+ G + Q + + P+L +++ + +T +A WAI+ S G + I+
Sbjct: 147 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS-YLSDGPQEAIQ 205
Query: 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+I + ELL+ + AL + NI+
Sbjct: 206 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+QT++VI+AG +P LL SP E+ + + +
Sbjct: 244 LQTQVVINAGVLPALRLLLSSPKEN-----------------------------IKKEAC 274
Query: 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK---IQ 117
W +SN+ G T A + L +LL A+ +ACWAIS S G ++ I+
Sbjct: 275 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 334
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
++ G + L +LL ++++ L A+ NI+
Sbjct: 335 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 368
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 344 bits (883), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 177/347 (51%), Positives = 242/347 (69%), Gaps = 18/347 (5%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLIDK 48
QT++V+DA AVP+FIQLL + +V ++ + L N + P++
Sbjct: 77 QTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 135
Query: 49 -PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
N+ S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISY
Sbjct: 136 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 195
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 196 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 255
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE+KT+KEA
Sbjct: 256 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 315
Query: 228 AWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENI+K+GE +
Sbjct: 316 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGEADK 375
Query: 286 KQTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331
+ G ++N IE+ G++KI Q +EN +IY+KA+ IIE YFG
Sbjct: 376 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 422
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVIDAGV 124
L R PP D A + L + P++L +A WA++ ++ G + + + V+DA
Sbjct: 27 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 86
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
++LL +V A+ A+GN+ +L C+A+ +L L S K S+ +
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 146
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244
A W +SN+ G + Q + + P+L +++ + +T +A WAI+ S G + I+
Sbjct: 147 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS-YLSDGPQEAIQ 205
Query: 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+I + ELL+ + AL + NI+
Sbjct: 206 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+QT++VI+AG +P LL SP E+ + + +
Sbjct: 244 LQTQVVINAGVLPALRLLLSSPKEN-----------------------------IKKEAC 274
Query: 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK---IQ 117
W +SN+ G T A + L +LL A+ +ACWAIS S G ++ I+
Sbjct: 275 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 334
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
++ G + L +LL ++++ L A+ NI+
Sbjct: 335 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENII 368
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 178/347 (51%), Positives = 241/347 (69%), Gaps = 18/347 (5%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLIDK 48
QT++V+DA AVP+FIQLL + +V ++ + L N + P++
Sbjct: 79 QTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 137
Query: 49 -PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
N+ S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISY
Sbjct: 138 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 197
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 198 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 257
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE KT+KEA
Sbjct: 258 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 317
Query: 228 AWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENILK+GE +
Sbjct: 318 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 377
Query: 286 KQTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331
+ G ++N IE+ G++KI Q +EN +IY+KA+ IIE YFG
Sbjct: 378 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 424
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVIDAGV 124
L R PP D A + L + P++L +A WA++ ++ G + + + V+DA
Sbjct: 29 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 88
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
++LL +V A+ A+GN+ +L C+A+ +L L S K S+ +
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 148
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244
A W +SN+ G + Q + + P+L +++ + +T +A WAI+ S G + I+
Sbjct: 149 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS-YLSDGPQEAIQ 207
Query: 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+I + ELL+ + AL + NI+
Sbjct: 208 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+QT++VI+AG +P LL SP E+ + + +
Sbjct: 246 LQTQVVINAGVLPALRLLLSSPKEN-----------------------------IKKEAC 276
Query: 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK---IQ 117
W +SN+ G T A + L +LL A+ +ACWAIS S G ++ I+
Sbjct: 277 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIR 336
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
++ G + L +LL ++++ L A+ NI+
Sbjct: 337 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 370
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 177/346 (51%), Positives = 240/346 (69%), Gaps = 18/346 (5%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLIDK 48
QT++V+DA AVP+FIQLL + +V ++ + L N + P++
Sbjct: 79 QTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 137
Query: 49 -PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
N+ S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISY
Sbjct: 138 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 197
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 198 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 257
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE KT+KEA
Sbjct: 258 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 317
Query: 228 AWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENILK+GE +
Sbjct: 318 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 377
Query: 286 KQTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ G ++N IE+ G++KI Q +EN +IY+KA+ IIE YF
Sbjct: 378 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVIDAGV 124
L R PP D A + L + P++L +A WA++ ++ G + + + V+DA
Sbjct: 29 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 88
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
++LL +V A+ A+GN+ +L C+A+ +L L S K S+ +
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 148
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244
A W +SN+ G + Q + + P+L +++ + +T +A WAI+ S G + I+
Sbjct: 149 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS-YLSDGPQEAIQ 207
Query: 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+I + ELL+ + AL + NI+
Sbjct: 208 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+QT++VI+AG +P LL SP E+ + + +
Sbjct: 246 LQTQVVINAGVLPALRLLLSSPKEN-----------------------------IKKEAC 276
Query: 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK---IQ 117
W +SN+ G T A + L +LL A+ +ACWAIS S G ++ I+
Sbjct: 277 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIR 336
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
++ G + L +LL ++++ L A+ NI+
Sbjct: 337 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 370
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 316 bits (810), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 234/398 (58%), Gaps = 42/398 (10%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSV-------------ETMSLDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 121 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 179
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 180 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 239
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 240 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 299
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 300 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 359
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 360 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 415
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG-SEEEDTRVAP 341
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF EEED V P
Sbjct: 416 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 475
Query: 342 CVTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379
T + FA Q GA G FNF
Sbjct: 476 ETTSEG-------FAFQVQDGAP----------GTFNF 496
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 71 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 130
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 131 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 190
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 191 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 250
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 251 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 297
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 234/398 (58%), Gaps = 42/398 (10%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSV-------------ETMSLDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 135 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 429
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG-SEEEDTRVAP 341
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF EEED V P
Sbjct: 430 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 489
Query: 342 CVTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379
T + FA Q GA G FNF
Sbjct: 490 ETTSEG-------FAFQVQDGAP----------GTFNF 510
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 85 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 144
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 264
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 265 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 234/398 (58%), Gaps = 42/398 (10%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSV-------------ETMSLDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 135 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 429
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG-SEEEDTRVAP 341
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF EEED V P
Sbjct: 430 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 489
Query: 342 CVTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379
T + FA Q GA G FNF
Sbjct: 490 ETTSEG-------FAFQVQDGAP----------GTFNF 510
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 85 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 144
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 264
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 265 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 234/398 (58%), Gaps = 42/398 (10%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 85 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 144 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 203
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 204 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 263
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 264 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 323
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 324 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 379
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG-SEEEDTRVAP 341
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF EEED V P
Sbjct: 380 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 439
Query: 342 CVTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379
T + FA Q GA G FNF
Sbjct: 440 ETTSEG-------FAFQVQDGAP----------GTFNF 460
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 35 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 94
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 95 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 154
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 155 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 214
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 215 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 261
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 234/398 (58%), Gaps = 42/398 (10%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 91 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 149
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 150 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 209
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 210 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 269
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 270 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 329
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 330 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 385
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG-SEEEDTRVAP 341
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF EEED V P
Sbjct: 386 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 445
Query: 342 CVTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379
T + FA Q GA G FNF
Sbjct: 446 ETTSEG-------FAFQVQDGAP----------GTFNF 466
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 41 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 100
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 101 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 160
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 161 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 220
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 221 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 267
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 173/382 (45%), Positives = 230/382 (60%), Gaps = 32/382 (8%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSV-------------ETMSLDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 135 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 429
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG-SEEEDTRVAP 341
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF EEED V P
Sbjct: 430 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 489
Query: 342 CVTHDASGAQEFTFAGATQGGA 363
T + FA Q GA
Sbjct: 490 ETTSEG-------FAFQVQDGA 504
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 85 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 144
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 264
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 265 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 313 bits (803), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 177/397 (44%), Positives = 232/397 (58%), Gaps = 40/397 (10%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPH----EDQV--------THPSVETMSLDNNILYPLI--- 46
QT+ V+D GA+P FI LL SPH E V + + + + + PL+
Sbjct: 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL 213
Query: 47 ---DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACW 103
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+CW
Sbjct: 214 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 273
Query: 104 AISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILN 163
AISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ +++
Sbjct: 274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 333
Query: 164 CSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223
AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FKT
Sbjct: 334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393
Query: 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283
+K AAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI +
Sbjct: 394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF----Q 449
Query: 284 EAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG-SEEEDTRVAPC 342
A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF EEED V P
Sbjct: 450 AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPE 509
Query: 343 VTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379
T + FA Q GA G FNF
Sbjct: 510 TTSEG-------FAFQVQDGAP----------GTFNF 529
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 104 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 163
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 164 IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 223
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 283
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 284 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 330
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 178/398 (44%), Positives = 233/398 (58%), Gaps = 42/398 (10%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS---------LDNNILYPLIDKPKNR 52
QT+ V+D GA+P FI LL SPH ++ +V + D I Y +D
Sbjct: 86 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLAL 144
Query: 53 LSM----------VRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
L++ +RN W LSNLCR K P P V L L RLL H DP+VLAD C
Sbjct: 145 LAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTC 204
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQV++
Sbjct: 205 WAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVI 264
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 265 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFK 324
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEA WA+TN TSGGT +QI YL+ G IEP LLT D KII V L+ + NI
Sbjct: 325 TQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIF---- 380
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG-SEEEDTRVAP 341
+ A++ G ++IEEC GLDKIE LQ+HEN +Y+ + +IE YF EEED V P
Sbjct: 381 QAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVP 440
Query: 342 CVTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379
T + +TF Q GA G FNF
Sbjct: 441 ETTSEG-----YTF--QVQDGAP----------GTFNF 461
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 101/229 (44%), Gaps = 11/229 (4%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 36 LSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 95
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKES---- 180
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 96 IPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLAC 155
Query: 181 -IRKEACWAVSNITAGNRQQIQAVIDA--NIFPSLIEILQKAEFKTRKEAAWAITNATSG 237
+ W +SN+ + IDA I P+L+ +L + + + WAI+ T G
Sbjct: 156 GYLRNLTWTLSNLC--RNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDG 213
Query: 238 GTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK 286
++I +++ G + +LL + I+ AL + NI+ +E+ +
Sbjct: 214 PN-ERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQ 261
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 217/348 (62%), Gaps = 24/348 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSV-------------ETMSLDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 119 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 177
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 178 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 237
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 238 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 297
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 298 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 357
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 358 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 413
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 414 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 461
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 69 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 128
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 129 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 188
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 189 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 248
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 249 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 295
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 217/348 (62%), Gaps = 24/348 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 84 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 142
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 143 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 202
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 203 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 262
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 263 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 322
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 323 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 378
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 379 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 34 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 93
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 94 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 153
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 154 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 213
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 214 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 260
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 217/348 (62%), Gaps = 24/348 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 85 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 144 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 203
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 204 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 263
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 264 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 323
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 324 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 379
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 380 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 35 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 94
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 95 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 154
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 155 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 214
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 215 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 261
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 217/348 (62%), Gaps = 24/348 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 84 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 142
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 143 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 202
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 203 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 262
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 263 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 322
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 323 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 378
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 379 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 34 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 93
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 94 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 153
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 154 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 213
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 214 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 260
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 217/348 (62%), Gaps = 24/348 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 85 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 143
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 144 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 203
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 204 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 263
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 264 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 323
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 324 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 379
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 380 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 35 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 94
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 95 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 154
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 155 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 214
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 215 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 261
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 217/348 (62%), Gaps = 24/348 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 80 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 138
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 139 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 198
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 199 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 258
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 259 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 318
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 319 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 374
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 375 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 30 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 89
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 90 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 149
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 150 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 209
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 210 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 256
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 217/348 (62%), Gaps = 24/348 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 80 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 138
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 139 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 198
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 199 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 258
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 259 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 318
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 319 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 374
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 375 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 30 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 89
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 90 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 149
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 150 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 209
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 210 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 256
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 217/348 (62%), Gaps = 24/348 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSV-------------ETMSLDNNILYPLI-- 46
QT+ V+D GA+P FI LL SPH ++ +V + + + + PL+
Sbjct: 111 QTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 169
Query: 47 ----DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+C
Sbjct: 170 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 229
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
WAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ ++
Sbjct: 230 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 289
Query: 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
+ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FK
Sbjct: 290 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 349
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
T+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI
Sbjct: 350 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF---- 405
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
+ A++ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 406 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGV 124
L R K PP D A + L D + ++ WA++ ++ G +E+ +AV+D G
Sbjct: 61 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 120
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI--- 181
+ LL + A+ A+GNI +++ A+ LL L+ P S
Sbjct: 121 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 180
Query: 182 --RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ W +SN+ I P+L+ +L + + ++ WAI+ T G
Sbjct: 181 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 240
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
++I ++++G + +LL + I+ AL + NI+ +E+ ++
Sbjct: 241 -ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 287
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 12/222 (5%)
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDG NE+IQAVIDAG LV+LL +++ AL A+ NI +G ++Q Q +++ AL
Sbjct: 40 LSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L+ L+ SP E I +EA WA+SNI +G +QIQAVIDA P+L+++L + +EA
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
WA++N SGG +QI+ +I G + +LL+ + +I+Q AL L NI G E+ KQ
Sbjct: 159 LWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-KQ 216
Query: 288 TGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHY 329
++E L+K+E LQSHEN +I ++A + +E
Sbjct: 217 A---------VKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
A AL L +LL + +L +A WA+S ++ G NE+IQAVIDAG LV+LL ++
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+ AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I +EA WA+SNI +G +Q
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259
IQAVIDA P+L+++L + +EA WA++N SGG +Q + + + G +E +L
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQ 231
Query: 260 TLLDAKIIQVALNGLENI 277
+ + KI + A LE +
Sbjct: 232 SHENEKIQKEAQEALEKL 249
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 121/235 (51%), Gaps = 29/235 (12%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
Q + VIDAGA+P +QLL SP+E +++ ++W
Sbjct: 46 QIQAVIDAGALPALVQLLSSPNEQ-----------------------------ILQEALW 76
Query: 62 VLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121
LSN+ G A AL L +LL + +L +A WA+S ++ G NE+IQAVID
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI 181
AG LV+LL +++ AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 182 RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
+EA WA+SNI +G +Q QAV +A L ++ K +KEA A+ S
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 111/188 (59%), Gaps = 1/188 (0%)
Query: 90 LFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGN 149
L D L A +S ++ G NE+IQAVIDAG LV+LL +++ AL A+ N
Sbjct: 21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80
Query: 150 IVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIF 209
I +G ++Q Q +++ AL L+ L+ SP E I +EA WA+SNI +G +QIQAVIDA
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 210 PSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQV 269
P+L+++L + +EA WA++N SGG +Q + + + G +E +L + + KI +
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKE 199
Query: 270 ALNGLENI 277
A LE +
Sbjct: 200 AQEALEKL 207
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 127 RLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186
++V+ L + + +ALR + I +G ++Q Q +++ AL L+ L+ SP E I +EA
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYL 246
WA+SNI +G +QIQAVIDA P+L+++L + +EA WA++N SGG +QI+ +
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAV 134
Query: 247 IQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK 306
I G + +LL+ + +I+Q AL L NI G E+ KQ ++E L+K
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-KQA---------VKEAGALEK 184
Query: 307 IEFLQSHENIEIYQKAFDIIEHY 329
+E LQSHEN +I ++A + +E
Sbjct: 185 LEQLQSHENEKIQKEAQEALEKL 207
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 92/157 (58%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
A AL L +LL + +L +A WA+S ++ G NE+IQAVIDAG LV+LL ++
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+ AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I +EA WA+SNI +G +Q
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
QAV +A L ++ K +KEA A+ S
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 29/193 (15%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
Q + VIDAGA+P +QLL SP+E +++ ++W
Sbjct: 46 QIQAVIDAGALPALVQLLSSPNEQ-----------------------------ILQEALW 76
Query: 62 VLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121
LSN+ G A AL L +LL + +L +A WA+S ++ G NE+IQAVID
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI 181
AG LV+LL +++ AL A+ NI +G ++Q Q + AL L L E I
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Query: 182 RKEACWAVSNITA 194
+KEA A+ + +
Sbjct: 197 QKEAQEALEKLQS 209
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 3/189 (1%)
Query: 90 LFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGN 149
L D L A +S ++ G NE+IQAVIDAG LV+LL +++ AL A+ N
Sbjct: 21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80
Query: 150 IVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIF 209
I +G ++Q Q +++ AL L+ L+ SP E I +EA WA+SNI +G +QIQAVIDA
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 210 PSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCE-LLTLLDAKIIQ 268
P+L+++L + +EA WA++N SGG ++ + +++ EP E L + + KI +
Sbjct: 141 PALVQLLSSPNEQILQEALWALSNIASGG--NEQKQAVKEAGAEPALEQLQSSPNEKIQK 198
Query: 269 VALNGLENI 277
A LE I
Sbjct: 199 EAQEALEKI 207
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 115/202 (56%), Gaps = 11/202 (5%)
Query: 127 RLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186
++V+ L + + +ALR + I +G ++Q Q +++ AL L+ L+ SP E I +EA
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYL 246
WA+SNI +G +QIQAVIDA P+L+++L + +EA WA++N SGG +QI+ +
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAV 134
Query: 247 IQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK 306
I G + +LL+ + +I+Q AL L NI G E+ KQ ++E
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-KQA---------VKEAGAEPA 184
Query: 307 IEFLQSHENIEIYQKAFDIIEH 328
+E LQS N +I ++A + +E
Sbjct: 185 LEQLQSSPNEKIQKEAQEALEK 206
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 94/157 (59%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
A AL L +LL + +L +A WA+S ++ G NE+IQAVIDAG LV+LL ++
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+ AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I +EA WA+SNI +G +Q
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
QAV +A P+L ++ K +KEA A+ S
Sbjct: 173 KQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQS 209
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 29/193 (15%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
Q + VIDAGA+P +QLL SP+E +++ ++W
Sbjct: 46 QIQAVIDAGALPALVQLLSSPNEQ-----------------------------ILQEALW 76
Query: 62 VLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121
LSN+ G A AL L +LL + +L +A WA+S ++ G NE+IQAVID
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI 181
AG LV+LL +++ AL A+ NI +G ++Q Q + A L L SP E I
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKI 196
Query: 182 RKEACWAVSNITA 194
+KEA A+ I +
Sbjct: 197 QKEAQEALEKIQS 209
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTR 224
S L ++ + SP + + A +S I +G +QIQAVIDA P+L+++L +
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 225 KEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284
+EA WA++N SGG +QI+ +I G + +LL+ + +I+Q AL L NI G E+
Sbjct: 72 QEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDG NE+IQAVIDAG LV+LL +++ AL A+ NI +G ++Q Q +++ AL
Sbjct: 40 LSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L+ L+ SP E I +EA WA+SNI +G +QIQAVIDA P+L+++L + +EA
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277
WA++N SGG +Q + + + G +E +L + + KI + A LE +
Sbjct: 159 LWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 117/203 (57%), Gaps = 11/203 (5%)
Query: 127 RLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186
++ + L D + +A R I++ ++Q Q +++ AL L+ L+ SP E I +EA
Sbjct: 16 QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYL 246
WA+SNI +G +QIQAVIDA P+L+++L + +EA WA++N SGG +QI+ +
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAV 134
Query: 247 IQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK 306
I G + +LL+ + +I+Q AL L NI G E+ KQ ++E L+K
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-KQA---------VKEAGALEK 184
Query: 307 IEFLQSHENIEIYQKAFDIIEHY 329
+E LQSHEN +I ++A + +E
Sbjct: 185 LEQLQSHENEKIQKEAQEALEKL 207
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 92/157 (58%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
A AL L +LL + +L +A WA+S ++ G NE+IQAVIDAG LV+LL ++
Sbjct: 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+ AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I +EA WA+SNI +G +Q
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
QAV +A L ++ K +KEA A+ S
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 29/193 (15%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
Q + VIDAGA+P +QLL SP+E +++ ++W
Sbjct: 46 QIQAVIDAGALPALVQLLSSPNEQ-----------------------------ILQEALW 76
Query: 62 VLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121
LSN+ G A AL L +LL + +L +A WA+S ++ G NE+IQAVID
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI 181
AG LV+LL +++ AL A+ NI +G ++Q Q + AL L L E I
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Query: 182 RKEACWAVSNITA 194
+KEA A+ + +
Sbjct: 197 QKEAQEALEKLQS 209
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 114/198 (57%), Gaps = 1/198 (0%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
A + L +LL D +V +A A++ ++ GP+E I+A++DAG LV+LL +V
Sbjct: 43 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 102
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
A RA+ NI +G D+ + I++ + L+ L+ S ++KEA A++NI +G +
Sbjct: 103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259
I+A++DA L+++L + + +KEAA A+ N SG T I+ ++ G +E +LL
Sbjct: 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLL 221
Query: 260 TLLDAKIIQVALNGLENI 277
T D+++ + A LENI
Sbjct: 222 TSTDSEVQKEAQRALENI 239
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 109/193 (56%), Gaps = 3/193 (1%)
Query: 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145
L +LL D + +A ++ ++ GP I+A++DAG LV+LL +V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205
A+ NI +G D+ + I++ + L+ L+ S ++KEA A++NI +G + I+A++D
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126
Query: 206 ANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQ-IRYLIQQGCIEPFCELLTLLDA 264
A L+++L + + +KEAA A+ N SG PD+ I+ ++ G +E +LLT D+
Sbjct: 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 265 KIIQVALNGLENI 277
++ + A L NI
Sbjct: 185 EVQKEAARALANI 197
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 35/238 (14%)
Query: 4 RMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVL 63
+ ++DAG V V ++LL S T V+ + + L
Sbjct: 38 KAIVDAGGVEVLVKLLTS------TDSEVQ-----------------------KEAARAL 68
Query: 64 SNLCRGKTPPPDFAKV---APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120
+N+ G P + K A + L +LL D +V +A A++ ++ GP+E I+A++
Sbjct: 69 ANIASG---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKES 180
DAG LV+LL +V A RA+ NI +G D+ + I++ + L+ L+ S
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE 185
Query: 181 IRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238
++KEA A++NI +G I+A++DA L ++L + + +KEA A+ N SGG
Sbjct: 186 VQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
+LV+LL + A R + I +G + I++ + L+ L+ S ++KE
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQ-I 243
A A++NI +G + I+A++DA L+++L + + +KEAA A+ N SG PD+ I
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAI 121
Query: 244 RYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277
+ ++ G +E +LLT D+++ + A L NI
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 207 NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266
N L+++L + +T+KEAA + S G I+ ++ G +E +LLT D+++
Sbjct: 2 NDVEKLVKLLTSTDSETQKEAARDLAEIAS-GPASAIKAIVDAGGVEVLVKLLTSTDSEV 60
Query: 267 IQVALNGLENI 277
+ A L NI
Sbjct: 61 QKEAARALANI 71
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 10 GAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV-WVLSNLCR 68
AV F +L P +Q+ ++ M LI+ K+ +VR++ W + +C
Sbjct: 385 AAVMAFGSILEGPEPNQLKPLVIQAMP-------TLIELMKDPSVVVRDTTAWTVGRICE 437
Query: 69 GKTPPPDFAKV--APALACLSRLLFHADPDVLADACWAISYLSDGPNE 114
P V AP L CL L A+P V ++ CWA S L++ E
Sbjct: 438 -LLPEAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEAAYE 483
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 142 AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQI 200
AA+ A G+I+ G + L A+ L+ L++ P +R W V I I
Sbjct: 385 AAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELLPEAAI 444
Query: 201 QAVIDANIFPSLIEILQKAEFKTRKEAAWAITN 233
V A + LIE L AE + WA ++
Sbjct: 445 NDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSS 476
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 127 RLVELLMHDQHKVVSAALRAVGNIVTGD 154
RL E +D H+V+SAAL V NI++ D
Sbjct: 340 RLAEYKYYDMHQVISAALYQVKNIMSTD 367
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 139 VVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ 198
V S A + ++ +D+ + + L+ L+ PK+ + AC A+ NI+ G Q
Sbjct: 64 VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123
Query: 199 QIQ-AVIDANIFPSLIEILQKA 219
+ A+ + + P+L+ +L+KA
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKA 145
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 45 LIDKPKNRLSMVRNSV-WVLSNLCRGKTPPPDFAKV--APALACLSRLLFHADPDVLADA 101
LI+ K+ +VR++ W + +C P V AP L CL L A+P V ++
Sbjct: 288 LIELMKDPSVVVRDTAAWTVGRICE-LLPEAAINDVYLAPLLQCLIEGL-SAEPRVASNV 345
Query: 102 CWAISYLSDGPNE 114
CWA S L++ E
Sbjct: 346 CWAFSSLAEAAYE 358
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 10 GAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV-WVLSNLCR 68
AV F +L P Q+ ++ M LI+ K+ +VR++ W + +C
Sbjct: 385 AAVMAFGCILEGPEPSQLKPLVIQAMP-------TLIELMKDPSVVVRDTAAWTVGRICE 437
Query: 69 GKTPPPDFAKV--APALACLSRLLFHADPDVLADACWAISYLSDGPNE 114
P V AP L CL L A+P V ++ CWA S L++ E
Sbjct: 438 -LLPEAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEAAYE 483
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 10 GAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV-WVLSNLCR 68
AV F +L P Q+ ++ M LI+ K+ +VR++ W + +C
Sbjct: 385 AAVMAFGCILEGPEPSQLKPLVIQAMP-------TLIELMKDPSVVVRDTAAWTVGRICE 437
Query: 69 GKTPPPDFAKV--APALACLSRLLFHADPDVLADACWAISYLSDGPNE 114
P V AP L CL L A+P V ++ CWA S L++ E
Sbjct: 438 -LLPEAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEAAYE 483
>pdb|1LRR|A Chain A, Crystal Structure Of E. Coli Seqa Complexed With
Hemimethylated Dna
pdb|1LRR|D Chain D, Crystal Structure Of E. Coli Seqa Complexed With
Hemimethylated Dna
Length = 131
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 265 KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFD 324
K I+ + + +L L +E A+Q +VN +++L+ Y LD F ++ E++ +
Sbjct: 13 KTIKDKVRAMRELL-LSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRV-- 69
Query: 325 IIEHYFGSEEE 335
YF ++E+
Sbjct: 70 ----YFAADEQ 76
>pdb|3FMT|A Chain A, Crystal Structure Of Seqa Bound To Dna
pdb|3FMT|B Chain B, Crystal Structure Of Seqa Bound To Dna
pdb|3FMT|E Chain E, Crystal Structure Of Seqa Bound To Dna
pdb|3FMT|F Chain F, Crystal Structure Of Seqa Bound To Dna
Length = 162
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 265 KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFD 324
K I+ + + +L L +E A+Q +VN +++L+ Y LD F ++ E++ +
Sbjct: 44 KTIKDKVRAMRELL-LSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRV-- 100
Query: 325 IIEHYFGSEEE 335
YF ++E+
Sbjct: 101 ----YFAADEQ 107
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 10 GAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV-WVLSNLCR 68
AV F +L P Q+ ++ M LI+ K+ +VR++ W + +C
Sbjct: 385 AAVMAFGCILEGPEPSQLKPLVIQAMPT-------LIELMKDPSVVVRDTAAWTVGRICE 437
Query: 69 GKTPPPDFA----KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNE 114
P+ A +AP L CL L A+P V ++ CWA S L++ E
Sbjct: 438 LL---PEAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEAAYE 483
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 16/155 (10%)
Query: 142 AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS----------PKESIRK---EACWA 188
AALR + + + + IL+C+ + ++ IQS PKE+++K E C
Sbjct: 120 AALRRTMEMYS---KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176
Query: 189 VSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ 248
+ + I F I LQ A A I T+ P+++ LIQ
Sbjct: 177 EGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQ 236
Query: 249 QGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283
F E LLD +++ ++G + + +L E
Sbjct: 237 TALKGNFMEARELLDRLMVEYGMSGEDIVAQLFRE 271
>pdb|1J3E|A Chain A, Crystal Structure Of The E.Coli Seqa Protein Complexed
With N6-Methyladenine- Guanine Mismatch Dna
Length = 115
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 278 LKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE 335
L L +E A+Q +VN +++L+ Y LD F ++ E++ + YF ++E+
Sbjct: 9 LLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRV------YFAADEQ 60
>pdb|1IU3|C Chain C, Crystal Structure Of The E.Coli Seqa Protein Complexed
With Hemimethylated Dna
pdb|1IU3|F Chain F, Crystal Structure Of The E.Coli Seqa Protein Complexed
With Hemimethylated Dna
Length = 116
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 278 LKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE 335
L L +E A+Q +VN +++L+ Y LD F ++ E++ + YF ++E+
Sbjct: 10 LLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRV------YFAADEQ 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,962,240
Number of Sequences: 62578
Number of extensions: 437140
Number of successful extensions: 1553
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 170
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)