Query psy664
Match_columns 379
No_of_seqs 261 out of 2081
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 23:23:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166|consensus 100.0 1.5E-66 3.3E-71 475.6 34.5 339 1-341 143-496 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 2.8E-65 6E-70 435.3 26.4 353 1-358 148-518 (526)
3 KOG0166|consensus 100.0 4.2E-39 9.2E-44 295.3 24.7 321 3-333 102-438 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2E-39 4.3E-44 277.2 20.4 293 34-334 108-446 (526)
5 PLN03200 cellulose synthase-in 100.0 5.5E-34 1.2E-38 297.0 32.6 320 4-334 398-767 (2102)
6 PLN03200 cellulose synthase-in 100.0 9.5E-34 2.1E-38 295.3 34.2 318 2-335 223-642 (2102)
7 KOG4224|consensus 100.0 4.4E-27 9.6E-32 203.3 21.9 317 2-333 159-495 (550)
8 KOG4224|consensus 100.0 7E-27 1.5E-31 202.1 19.5 318 3-336 119-451 (550)
9 PF05804 KAP: Kinesin-associat 99.9 1.2E-21 2.6E-26 190.2 27.4 312 1-333 322-651 (708)
10 PF05804 KAP: Kinesin-associat 99.8 1.9E-17 4.1E-22 161.2 27.1 295 2-309 364-676 (708)
11 KOG1048|consensus 99.7 7.1E-16 1.5E-20 147.1 22.4 308 12-334 235-687 (717)
12 KOG4199|consensus 99.7 2.2E-15 4.7E-20 130.0 21.6 258 5-266 140-431 (461)
13 PF04826 Arm_2: Armadillo-like 99.7 5.8E-15 1.3E-19 128.0 23.8 236 78-322 9-253 (254)
14 KOG1222|consensus 99.7 2.7E-15 5.9E-20 135.0 21.2 307 1-317 336-698 (791)
15 PF10508 Proteasom_PSMB: Prote 99.7 8.4E-14 1.8E-18 134.0 28.1 319 8-333 75-422 (503)
16 KOG4199|consensus 99.7 6.4E-14 1.4E-18 121.0 23.9 281 35-329 140-442 (461)
17 PF10508 Proteasom_PSMB: Prote 99.7 5.4E-14 1.2E-18 135.3 26.3 272 45-333 43-321 (503)
18 KOG2122|consensus 99.6 1E-14 2.2E-19 145.4 17.4 253 29-282 328-604 (2195)
19 PRK09687 putative lyase; Provi 99.6 8.7E-14 1.9E-18 123.4 19.7 252 11-328 24-279 (280)
20 cd00020 ARM Armadillo/beta-cat 99.6 3.9E-14 8.4E-19 110.0 14.6 117 119-235 3-119 (120)
21 KOG1048|consensus 99.6 2.2E-14 4.7E-19 137.1 13.8 287 41-334 234-598 (717)
22 cd00020 ARM Armadillo/beta-cat 99.6 1.1E-13 2.3E-18 107.6 14.0 117 77-193 3-119 (120)
23 PF04826 Arm_2: Armadillo-like 99.5 7.7E-13 1.7E-17 114.8 19.2 227 36-270 8-253 (254)
24 KOG2122|consensus 99.5 4.5E-13 9.8E-18 134.0 16.5 265 58-333 317-603 (2195)
25 PRK09687 putative lyase; Provi 99.5 4.2E-12 9.2E-17 112.6 20.6 225 40-330 23-249 (280)
26 KOG1293|consensus 99.5 6.5E-12 1.4E-16 117.6 22.4 318 4-332 45-534 (678)
27 KOG4500|consensus 99.5 5.6E-12 1.2E-16 112.5 18.6 288 30-332 77-432 (604)
28 KOG1222|consensus 99.4 9.2E-11 2E-15 106.3 24.1 305 5-327 299-659 (791)
29 KOG4500|consensus 99.4 2.6E-11 5.6E-16 108.3 18.2 300 5-317 82-460 (604)
30 KOG2171|consensus 99.4 5.6E-10 1.2E-14 111.1 25.8 309 10-331 118-504 (1075)
31 cd00256 VATPase_H VATPase_H, r 99.3 5.1E-10 1.1E-14 103.5 23.9 288 40-330 53-424 (429)
32 PRK13800 putative oxidoreducta 99.3 2.5E-10 5.5E-15 117.7 22.7 245 8-329 619-865 (897)
33 PRK13800 putative oxidoreducta 99.3 5.7E-10 1.2E-14 115.1 23.4 243 8-327 650-895 (897)
34 KOG2160|consensus 99.3 2.6E-09 5.6E-14 94.4 23.2 189 92-282 94-285 (342)
35 KOG0168|consensus 99.3 1.9E-10 4.2E-15 110.4 17.1 217 39-261 210-437 (1051)
36 KOG0168|consensus 99.2 9.2E-10 2E-14 105.9 19.5 255 43-312 170-436 (1051)
37 KOG2171|consensus 99.2 1.2E-08 2.5E-13 101.9 27.7 258 41-312 203-526 (1075)
38 PF01602 Adaptin_N: Adaptin N 99.2 3.1E-09 6.6E-14 104.3 22.7 281 11-331 43-333 (526)
39 PF03224 V-ATPase_H_N: V-ATPas 99.2 2.4E-09 5.3E-14 97.3 18.9 226 42-270 57-305 (312)
40 cd00256 VATPase_H VATPase_H, r 99.1 8.3E-09 1.8E-13 95.6 19.7 267 10-279 101-425 (429)
41 KOG2160|consensus 99.1 2.8E-08 6.1E-13 88.0 20.0 186 50-236 94-282 (342)
42 KOG2759|consensus 99.1 1.1E-07 2.4E-12 85.4 23.8 279 41-331 115-438 (442)
43 KOG1293|consensus 99.1 6.2E-09 1.3E-13 98.0 15.6 148 134-282 388-536 (678)
44 PF01602 Adaptin_N: Adaptin N 99.1 6E-09 1.3E-13 102.2 16.5 281 12-331 81-369 (526)
45 KOG2023|consensus 99.0 1.3E-08 2.9E-13 95.8 16.7 301 11-334 129-508 (885)
46 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.8E-08 3.9E-13 91.6 17.3 232 82-326 56-309 (312)
47 KOG2759|consensus 98.9 1.9E-07 4.1E-12 84.0 18.8 227 51-280 169-439 (442)
48 KOG3678|consensus 98.9 5.8E-07 1.2E-11 81.8 20.9 275 31-329 171-450 (832)
49 PTZ00429 beta-adaptin; Provisi 98.9 5.9E-07 1.3E-11 89.6 22.9 182 42-235 142-325 (746)
50 PTZ00429 beta-adaptin; Provisi 98.9 1.5E-06 3.3E-11 86.7 25.0 224 42-284 107-331 (746)
51 KOG2023|consensus 98.8 6.5E-08 1.4E-12 91.2 13.9 262 11-281 11-287 (885)
52 KOG0946|consensus 98.8 4.2E-06 9.2E-11 80.8 25.2 299 29-334 51-402 (970)
53 KOG1241|consensus 98.8 4.7E-07 1E-11 86.8 18.4 271 10-285 319-632 (859)
54 KOG0946|consensus 98.8 3.8E-06 8.2E-11 81.1 23.0 276 42-326 24-341 (970)
55 KOG1241|consensus 98.7 4.9E-06 1.1E-10 80.1 22.2 272 39-329 318-624 (859)
56 KOG1517|consensus 98.7 3.3E-07 7.2E-12 90.5 13.0 216 29-246 501-741 (1387)
57 COG5369 Uncharacterized conser 98.6 8E-08 1.7E-12 88.6 6.7 266 6-277 427-739 (743)
58 KOG2973|consensus 98.6 0.0001 2.2E-09 64.2 23.7 273 44-334 7-318 (353)
59 COG5181 HSH155 U2 snRNP splice 98.6 2E-06 4.3E-11 80.9 14.4 259 41-331 605-870 (975)
60 PF14664 RICTOR_N: Rapamycin-i 98.6 7.6E-06 1.6E-10 75.6 18.2 303 13-331 5-364 (371)
61 KOG1517|consensus 98.5 1.9E-06 4E-11 85.5 14.0 207 6-212 508-750 (1387)
62 KOG3678|consensus 98.5 2.9E-06 6.4E-11 77.4 14.3 163 117-282 174-339 (832)
63 KOG1059|consensus 98.5 1.9E-05 4.1E-10 75.7 18.5 221 78-333 141-367 (877)
64 KOG0213|consensus 98.4 5.4E-06 1.2E-10 79.6 14.4 254 46-331 805-1065(1172)
65 PF00514 Arm: Armadillo/beta-c 98.4 3.8E-07 8.3E-12 55.7 4.2 40 29-68 1-41 (41)
66 COG5215 KAP95 Karyopherin (imp 98.4 2.7E-05 5.8E-10 72.9 17.4 287 10-314 321-692 (858)
67 PF00514 Arm: Armadillo/beta-c 98.4 6.8E-07 1.5E-11 54.5 4.7 40 196-235 1-40 (41)
68 KOG4413|consensus 98.4 8E-05 1.7E-09 65.3 18.5 263 59-332 63-334 (524)
69 COG5181 HSH155 U2 snRNP splice 98.4 1.6E-05 3.5E-10 75.0 15.0 252 11-280 605-871 (975)
70 TIGR02270 conserved hypothetic 98.3 0.00025 5.5E-09 66.4 22.2 150 40-234 54-205 (410)
71 KOG2734|consensus 98.3 0.00049 1.1E-08 62.8 22.8 242 58-311 103-370 (536)
72 KOG1242|consensus 98.3 2.7E-05 5.9E-10 73.8 15.1 265 43-336 137-406 (569)
73 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00024 5.2E-09 65.7 20.2 239 78-333 22-271 (371)
74 KOG1062|consensus 98.2 0.00013 2.8E-09 71.1 18.7 134 50-197 118-266 (866)
75 COG5369 Uncharacterized conser 98.2 6.8E-06 1.5E-10 76.2 9.8 187 98-284 406-599 (743)
76 KOG1059|consensus 98.2 0.00011 2.3E-09 70.8 17.7 216 43-281 147-367 (877)
77 PF13646 HEAT_2: HEAT repeats; 98.2 7.7E-06 1.7E-10 59.3 7.3 86 83-190 1-88 (88)
78 KOG4413|consensus 98.2 0.00014 3E-09 63.8 16.0 197 124-333 83-288 (524)
79 PF12348 CLASP_N: CLASP N term 98.2 3.1E-05 6.8E-10 67.2 12.2 188 133-334 17-209 (228)
80 TIGR02270 conserved hypothetic 98.2 0.00051 1.1E-08 64.4 20.6 218 10-280 54-297 (410)
81 KOG1062|consensus 98.2 0.00081 1.8E-08 65.7 22.0 225 41-280 143-415 (866)
82 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.00012 2.7E-09 63.9 15.0 226 52-279 162-428 (432)
83 KOG1242|consensus 98.1 0.00049 1.1E-08 65.5 19.5 278 37-342 171-457 (569)
84 KOG2259|consensus 98.1 4.5E-05 9.7E-10 72.6 12.6 213 58-281 198-441 (823)
85 KOG0213|consensus 98.1 0.00084 1.8E-08 65.1 21.0 304 6-330 503-827 (1172)
86 PF05536 Neurochondrin: Neuroc 98.1 0.00026 5.6E-09 69.0 18.3 220 12-235 7-260 (543)
87 PF13513 HEAT_EZ: HEAT-like re 98.1 4.8E-06 1E-10 54.5 4.4 55 179-234 1-55 (55)
88 KOG1824|consensus 98.1 5.2E-05 1.1E-09 74.9 12.8 258 14-284 9-291 (1233)
89 PF13646 HEAT_2: HEAT repeats; 98.1 1.1E-05 2.4E-10 58.5 6.5 86 125-232 1-88 (88)
90 PF12348 CLASP_N: CLASP N term 98.0 7.5E-05 1.6E-09 64.8 12.1 187 91-284 17-211 (228)
91 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00045 9.8E-09 60.5 16.3 237 85-332 153-429 (432)
92 KOG4646|consensus 98.0 4.3E-05 9.4E-10 58.2 8.5 121 42-164 18-140 (173)
93 COG1413 FOG: HEAT repeat [Ener 98.0 0.00099 2.2E-08 61.4 19.3 210 11-274 44-268 (335)
94 KOG1240|consensus 98.0 0.0007 1.5E-08 68.9 18.6 257 52-332 436-726 (1431)
95 KOG1824|consensus 98.0 0.0007 1.5E-08 67.3 18.2 229 44-284 9-247 (1233)
96 KOG0212|consensus 98.0 0.00031 6.8E-09 65.9 15.0 309 9-335 83-410 (675)
97 PF05536 Neurochondrin: Neuroc 98.0 0.0014 3E-08 64.0 20.3 242 81-332 5-262 (543)
98 COG1413 FOG: HEAT repeat [Ener 98.0 0.001 2.2E-08 61.3 18.8 185 40-278 43-241 (335)
99 PF13513 HEAT_EZ: HEAT-like re 98.0 2.3E-05 5.1E-10 51.2 5.7 55 95-150 1-55 (55)
100 KOG0212|consensus 97.9 0.00079 1.7E-08 63.3 16.9 263 11-283 126-410 (675)
101 KOG1061|consensus 97.9 0.00029 6.4E-09 68.5 14.3 260 11-284 122-420 (734)
102 KOG4646|consensus 97.9 0.00044 9.6E-09 52.8 12.2 124 80-205 15-139 (173)
103 KOG1077|consensus 97.9 0.0025 5.4E-08 61.6 19.5 257 52-333 161-439 (938)
104 KOG1077|consensus 97.8 0.0018 3.9E-08 62.5 18.0 256 50-334 122-401 (938)
105 COG5215 KAP95 Karyopherin (imp 97.8 0.0033 7.2E-08 59.4 18.8 227 50-284 232-484 (858)
106 PF08569 Mo25: Mo25-like; Int 97.8 0.006 1.3E-07 55.6 19.6 207 116-332 69-284 (335)
107 KOG2973|consensus 97.8 0.0067 1.5E-07 53.1 18.6 259 13-279 6-315 (353)
108 smart00185 ARM Armadillo/beta- 97.8 5.7E-05 1.2E-09 45.8 4.5 39 30-68 2-41 (41)
109 KOG1789|consensus 97.7 0.0025 5.3E-08 64.3 17.6 250 10-262 1771-2142(2235)
110 KOG1789|consensus 97.7 0.012 2.7E-07 59.5 22.0 260 39-313 1770-2141(2235)
111 COG5096 Vesicle coat complex, 97.7 0.0062 1.3E-07 60.5 19.9 164 50-235 30-194 (757)
112 PF12755 Vac14_Fab1_bd: Vacuol 97.7 0.00097 2.1E-08 48.9 11.0 94 224-331 3-96 (97)
113 PF12755 Vac14_Fab1_bd: Vacuol 97.7 0.00038 8.2E-09 51.1 8.7 95 181-279 2-96 (97)
114 KOG1061|consensus 97.7 0.0016 3.4E-08 63.6 14.9 196 79-285 119-314 (734)
115 KOG4151|consensus 97.6 0.00069 1.5E-08 66.3 12.1 248 5-258 464-720 (748)
116 COG5096 Vesicle coat complex, 97.6 0.011 2.5E-07 58.8 20.6 135 45-194 60-195 (757)
117 PF10165 Ric8: Guanine nucleot 97.6 0.039 8.4E-07 52.8 23.8 269 60-331 2-337 (446)
118 smart00185 ARM Armadillo/beta- 97.6 0.0002 4.3E-09 43.3 5.4 38 114-151 3-40 (41)
119 KOG1991|consensus 97.6 0.029 6.2E-07 56.6 22.7 266 50-330 473-756 (1010)
120 PF09759 Atx10homo_assoc: Spin 97.6 0.00044 9.5E-09 50.8 7.7 67 97-163 2-70 (102)
121 KOG4535|consensus 97.6 0.00011 2.3E-09 67.7 5.5 219 53-277 363-601 (728)
122 KOG0915|consensus 97.6 0.0023 5.1E-08 66.7 15.4 251 50-327 829-1106(1702)
123 KOG2734|consensus 97.6 0.02 4.3E-07 52.7 19.2 221 99-333 102-348 (536)
124 PF08569 Mo25: Mo25-like; Int 97.5 0.013 2.8E-07 53.5 18.3 229 30-261 66-312 (335)
125 PF09759 Atx10homo_assoc: Spin 97.5 0.00059 1.3E-08 50.2 7.8 66 139-204 2-69 (102)
126 KOG2259|consensus 97.5 0.0019 4.1E-08 61.9 12.9 193 42-246 236-484 (823)
127 KOG1060|consensus 97.5 0.013 2.8E-07 57.6 18.5 208 43-280 38-247 (968)
128 PF12717 Cnd1: non-SMC mitotic 97.5 0.014 3.1E-07 48.3 16.4 93 94-195 1-93 (178)
129 KOG0211|consensus 97.5 0.01 2.2E-07 59.6 17.7 266 31-324 389-657 (759)
130 PF11841 DUF3361: Domain of un 97.4 0.013 2.8E-07 46.8 14.7 130 116-246 4-141 (160)
131 PF10165 Ric8: Guanine nucleot 97.4 0.068 1.5E-06 51.2 22.2 233 50-284 43-342 (446)
132 PF12717 Cnd1: non-SMC mitotic 97.3 0.024 5.2E-07 47.0 16.1 97 136-241 1-97 (178)
133 PF11841 DUF3361: Domain of un 97.3 0.0057 1.2E-07 48.8 11.6 121 76-197 6-134 (160)
134 KOG4535|consensus 97.3 0.0003 6.5E-09 64.9 4.9 144 134-282 402-562 (728)
135 KOG3036|consensus 97.3 0.05 1.1E-06 46.3 17.3 148 96-247 94-256 (293)
136 KOG1240|consensus 97.3 0.0035 7.5E-08 64.1 12.3 233 38-282 460-728 (1431)
137 KOG0567|consensus 97.3 0.04 8.7E-07 47.4 16.7 210 54-329 51-278 (289)
138 KOG0915|consensus 97.2 0.029 6.2E-07 59.1 18.5 178 41-223 999-1188(1702)
139 KOG1058|consensus 97.2 0.034 7.4E-07 54.5 17.5 219 83-334 245-466 (948)
140 KOG0211|consensus 97.2 0.027 6E-07 56.5 17.3 260 8-280 396-665 (759)
141 PF04078 Rcd1: Cell differenti 97.2 0.036 7.8E-07 47.9 15.6 151 93-246 7-176 (262)
142 KOG1943|consensus 97.1 0.19 4.2E-06 51.5 22.4 299 10-330 341-704 (1133)
143 COG5240 SEC21 Vesicle coat com 97.1 0.025 5.4E-07 53.8 15.2 200 84-307 267-468 (898)
144 KOG1058|consensus 97.1 0.04 8.7E-07 54.0 16.9 264 36-334 48-349 (948)
145 PF12460 MMS19_C: RNAPII trans 97.1 0.025 5.4E-07 53.7 15.7 187 41-238 190-396 (415)
146 KOG0567|consensus 97.1 0.057 1.2E-06 46.5 15.8 203 32-279 59-280 (289)
147 PF12460 MMS19_C: RNAPII trans 97.0 0.19 4.1E-06 47.8 21.0 193 79-284 187-399 (415)
148 KOG1060|consensus 97.0 0.037 8E-07 54.6 15.9 54 50-111 298-351 (968)
149 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0016 3.4E-08 49.3 5.4 73 207-280 43-116 (119)
150 KOG1991|consensus 97.0 0.33 7.2E-06 49.3 22.8 165 58-228 391-568 (1010)
151 PF05004 IFRD: Interferon-rela 97.0 0.075 1.6E-06 48.2 17.1 195 125-333 45-259 (309)
152 PF13764 E3_UbLigase_R4: E3 ub 97.0 0.12 2.6E-06 52.5 19.8 209 8-222 82-334 (802)
153 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0017 3.8E-08 49.0 5.3 73 80-152 42-115 (119)
154 KOG2274|consensus 96.9 0.047 1E-06 54.6 16.0 160 39-201 529-696 (1005)
155 COG5240 SEC21 Vesicle coat com 96.9 0.09 2E-06 50.2 17.1 129 50-193 275-403 (898)
156 KOG1967|consensus 96.9 0.012 2.5E-07 58.9 11.9 194 124-332 816-1025(1030)
157 KOG4151|consensus 96.9 0.068 1.5E-06 52.9 16.5 210 106-332 487-700 (748)
158 KOG1248|consensus 96.9 0.1 2.2E-06 53.9 18.1 229 50-282 665-901 (1176)
159 PF08045 CDC14: Cell division 96.9 0.051 1.1E-06 47.2 13.9 102 223-335 107-211 (257)
160 PF06025 DUF913: Domain of Unk 96.8 0.36 7.8E-06 45.1 20.5 150 54-204 75-242 (379)
161 KOG2062|consensus 96.8 0.27 5.9E-06 48.4 19.6 90 175-282 565-656 (929)
162 KOG2274|consensus 96.8 0.55 1.2E-05 47.4 21.7 188 50-244 502-696 (1005)
163 PF05004 IFRD: Interferon-rela 96.8 0.27 5.9E-06 44.6 18.6 196 83-283 45-261 (309)
164 KOG1248|consensus 96.7 0.43 9.4E-06 49.5 21.3 217 91-329 664-896 (1176)
165 PF06025 DUF913: Domain of Unk 96.7 0.47 1E-05 44.3 20.4 143 140-284 77-237 (379)
166 KOG0414|consensus 96.7 0.025 5.4E-07 58.1 12.2 160 61-235 899-1063(1251)
167 KOG1967|consensus 96.6 0.0079 1.7E-07 60.0 8.3 157 32-191 860-1021(1030)
168 KOG1943|consensus 96.6 0.25 5.5E-06 50.6 18.7 226 77-334 337-576 (1133)
169 PF12719 Cnd3: Nuclear condens 96.6 0.16 3.4E-06 46.0 16.1 111 123-238 26-145 (298)
170 KOG2025|consensus 96.6 0.82 1.8E-05 45.1 20.8 130 53-191 60-190 (892)
171 PF11707 Npa1: Ribosome 60S bi 96.5 0.66 1.4E-05 42.6 20.7 161 167-333 58-239 (330)
172 COG5656 SXM1 Importin, protein 96.5 0.83 1.8E-05 45.3 20.6 114 38-154 406-530 (970)
173 KOG1020|consensus 96.5 0.1 2.2E-06 55.2 15.3 164 56-236 794-960 (1692)
174 KOG1243|consensus 96.5 0.022 4.7E-07 55.5 10.1 192 78-283 327-519 (690)
175 KOG3036|consensus 96.5 0.35 7.6E-06 41.4 15.8 146 180-332 93-248 (293)
176 PF12719 Cnd3: Nuclear condens 96.4 0.028 6E-07 50.9 9.8 108 170-282 32-146 (298)
177 KOG1020|consensus 96.3 0.066 1.4E-06 56.5 12.9 166 97-280 793-961 (1692)
178 PF02985 HEAT: HEAT repeat; I 96.3 0.0063 1.4E-07 34.2 3.4 29 82-110 1-29 (31)
179 KOG2032|consensus 96.3 0.99 2.1E-05 42.6 22.6 131 59-194 237-371 (533)
180 KOG2062|consensus 96.3 0.087 1.9E-06 51.7 12.9 136 81-241 519-658 (929)
181 PF14668 RICTOR_V: Rapamycin-i 96.3 0.039 8.5E-07 37.9 7.8 67 182-251 4-71 (73)
182 PF11701 UNC45-central: Myosin 96.3 0.044 9.5E-07 44.3 9.3 143 127-276 7-156 (157)
183 KOG1243|consensus 96.2 0.026 5.6E-07 55.0 9.0 231 74-334 286-518 (690)
184 KOG1078|consensus 96.2 0.49 1.1E-05 47.0 17.3 69 81-154 245-313 (865)
185 PF14668 RICTOR_V: Rapamycin-i 96.2 0.027 5.9E-07 38.7 6.5 67 224-303 4-71 (73)
186 PF04078 Rcd1: Cell differenti 96.1 0.8 1.7E-05 39.8 18.6 195 136-334 8-221 (262)
187 PF04063 DUF383: Domain of unk 96.1 0.031 6.8E-07 46.6 8.0 124 50-175 6-157 (192)
188 PF02985 HEAT: HEAT repeat; I 96.1 0.0099 2.2E-07 33.4 3.4 29 166-194 1-29 (31)
189 COG5656 SXM1 Importin, protein 96.1 1.4 3E-05 43.8 19.6 116 78-196 405-530 (970)
190 KOG4653|consensus 96.0 0.59 1.3E-05 47.0 17.2 219 50-279 738-964 (982)
191 KOG4653|consensus 96.0 0.52 1.1E-05 47.3 16.7 228 83-329 729-962 (982)
192 PF13764 E3_UbLigase_R4: E3 ub 96.0 0.69 1.5E-05 47.2 18.0 199 3-217 110-360 (802)
193 PF05918 API5: Apoptosis inhib 95.9 0.14 3E-06 49.7 12.1 97 177-284 34-130 (556)
194 KOG2032|consensus 95.9 0.64 1.4E-05 43.8 15.8 112 38-152 252-371 (533)
195 PF11701 UNC45-central: Myosin 95.8 0.13 2.9E-06 41.5 10.2 145 167-328 5-156 (157)
196 KOG2956|consensus 95.8 1.1 2.4E-05 42.0 16.9 171 53-236 301-477 (516)
197 KOG0414|consensus 95.8 0.11 2.3E-06 53.7 11.3 141 124-280 920-1065(1251)
198 PF06371 Drf_GBD: Diaphanous G 95.7 0.61 1.3E-05 38.8 14.4 110 82-193 67-186 (187)
199 KOG2137|consensus 95.7 0.19 4.2E-06 49.3 12.3 139 74-220 382-521 (700)
200 PF11707 Npa1: Ribosome 60S bi 95.6 1.8 3.8E-05 39.8 20.8 163 117-280 51-238 (330)
201 KOG2025|consensus 95.6 1.7 3.7E-05 43.0 18.1 103 40-148 85-189 (892)
202 COG5116 RPN2 26S proteasome re 95.6 0.15 3.2E-06 48.7 10.8 151 85-262 520-674 (926)
203 PF08045 CDC14: Cell division 95.5 0.34 7.3E-06 42.2 12.1 99 180-279 106-207 (257)
204 KOG1078|consensus 95.5 0.68 1.5E-05 46.1 15.3 69 124-197 246-314 (865)
205 PF05918 API5: Apoptosis inhib 95.5 0.16 3.6E-06 49.1 11.2 125 93-235 34-161 (556)
206 PF07814 WAPL: Wings apart-lik 95.5 0.6 1.3E-05 43.4 14.5 240 29-281 52-357 (361)
207 COG5098 Chromosome condensatio 95.4 0.12 2.6E-06 50.5 9.8 133 135-283 908-1041(1128)
208 KOG1820|consensus 95.3 0.49 1.1E-05 48.3 14.2 195 79-282 251-446 (815)
209 PF01347 Vitellogenin_N: Lipop 95.3 0.29 6.4E-06 49.2 13.0 203 33-271 385-614 (618)
210 COG5218 YCG1 Chromosome conden 95.1 2.6 5.7E-05 40.8 17.3 130 53-190 65-195 (885)
211 KOG2933|consensus 95.1 0.42 9E-06 42.3 11.2 145 80-237 87-235 (334)
212 PF04063 DUF383: Domain of unk 95.1 0.38 8.3E-06 40.2 10.6 123 134-259 6-156 (192)
213 COG5116 RPN2 26S proteasome re 95.0 0.38 8.2E-06 46.1 11.5 91 175-282 562-653 (926)
214 PF01603 B56: Protein phosphat 94.9 1.4 3E-05 41.8 15.4 260 56-333 107-372 (409)
215 KOG1949|consensus 94.9 4.4 9.6E-05 40.2 18.3 235 37-279 126-370 (1005)
216 KOG2999|consensus 94.6 3.3 7.2E-05 39.8 16.3 159 124-285 84-248 (713)
217 PF13251 DUF4042: Domain of un 94.5 1.4 3.1E-05 36.4 12.5 138 55-195 2-175 (182)
218 KOG2137|consensus 94.5 1.3 2.8E-05 43.9 13.9 209 52-281 286-498 (700)
219 KOG3665|consensus 94.4 1.7 3.6E-05 44.2 15.3 196 104-330 494-696 (699)
220 KOG1820|consensus 94.4 1.5 3.3E-05 44.8 15.0 183 50-241 264-448 (815)
221 KOG1566|consensus 94.4 3.5 7.6E-05 36.8 17.8 207 116-334 72-289 (342)
222 cd03568 VHS_STAM VHS domain fa 94.3 0.25 5.4E-06 39.2 7.5 77 252-337 39-116 (144)
223 KOG2956|consensus 94.3 4.8 0.0001 38.0 17.9 176 94-282 300-480 (516)
224 PF10363 DUF2435: Protein of u 94.3 0.23 4.9E-06 36.0 6.6 72 125-198 5-76 (92)
225 COG5098 Chromosome condensatio 94.2 0.81 1.8E-05 45.0 11.8 141 81-236 892-1037(1128)
226 smart00638 LPD_N Lipoprotein N 94.2 3.8 8.3E-05 40.8 17.4 134 81-234 393-543 (574)
227 KOG1848|consensus 94.2 3.1 6.7E-05 44.4 16.4 231 91-331 852-1132(1610)
228 KOG2999|consensus 94.1 5.9 0.00013 38.2 20.5 166 82-249 84-255 (713)
229 KOG3665|consensus 94.0 7.9 0.00017 39.4 19.1 94 230-333 494-589 (699)
230 KOG1566|consensus 94.0 4.3 9.4E-05 36.2 20.0 206 29-236 68-286 (342)
231 cd03569 VHS_Hrs_Vps27p VHS dom 93.8 0.35 7.6E-06 38.3 7.5 76 252-336 43-119 (142)
232 PF06685 DUF1186: Protein of u 93.8 3.6 7.9E-05 35.8 14.1 130 121-256 71-203 (249)
233 PF12530 DUF3730: Protein of u 93.6 4.4 9.6E-05 35.1 16.4 200 42-264 2-217 (234)
234 COG5209 RCD1 Uncharacterized p 93.6 0.54 1.2E-05 39.6 8.3 136 98-235 117-267 (315)
235 PF08167 RIX1: rRNA processing 93.5 0.84 1.8E-05 37.2 9.5 110 123-236 25-143 (165)
236 cd03572 ENTH_epsin_related ENT 93.0 1.6 3.4E-05 33.4 9.5 91 228-333 22-121 (122)
237 COG5218 YCG1 Chromosome conden 93.0 1.4 3E-05 42.6 10.9 101 164-272 90-192 (885)
238 PF06371 Drf_GBD: Diaphanous G 92.9 1.6 3.5E-05 36.2 10.6 82 195-278 95-186 (187)
239 PF01347 Vitellogenin_N: Lipop 92.8 7.5 0.00016 39.1 17.0 163 124-326 432-617 (618)
240 PF10363 DUF2435: Protein of u 92.5 0.45 9.7E-06 34.5 5.7 72 209-283 5-76 (92)
241 PF11865 DUF3385: Domain of un 92.4 2.7 6E-05 34.0 10.9 147 79-235 8-156 (160)
242 PF13251 DUF4042: Domain of un 92.3 3.9 8.4E-05 33.9 11.6 143 139-281 2-176 (182)
243 KOG2933|consensus 92.1 1.1 2.4E-05 39.7 8.6 142 42-192 90-232 (334)
244 PRK14707 hypothetical protein; 92.1 23 0.0005 40.1 19.4 231 81-325 248-481 (2710)
245 PRK14707 hypothetical protein; 92.0 26 0.00055 39.8 20.7 268 50-332 176-446 (2710)
246 cd03561 VHS VHS domain family; 91.8 2.8 6E-05 32.8 10.0 75 252-335 39-116 (133)
247 PF08506 Cse1: Cse1; InterPro 91.8 8.5 0.00018 35.9 14.7 128 137-274 225-370 (370)
248 KOG2611|consensus 91.3 7.5 0.00016 36.9 13.3 162 29-194 45-225 (698)
249 cd03567 VHS_GGA VHS domain fam 91.3 1.3 2.8E-05 34.9 7.4 76 252-336 40-121 (139)
250 PF07814 WAPL: Wings apart-lik 91.1 10 0.00022 35.3 14.5 92 125-217 23-116 (361)
251 smart00288 VHS Domain present 90.9 1.1 2.4E-05 35.0 6.8 77 252-337 39-117 (133)
252 PF11865 DUF3385: Domain of un 90.7 4.4 9.5E-05 32.8 10.4 146 123-279 10-157 (160)
253 PF08324 PUL: PUL domain; Int 90.7 2.5 5.4E-05 37.5 9.8 161 80-243 62-237 (268)
254 PF12530 DUF3730: Protein of u 90.6 11 0.00023 32.8 19.1 210 83-323 2-224 (234)
255 PF08167 RIX1: rRNA processing 90.4 5.2 0.00011 32.6 10.7 124 165-299 25-157 (165)
256 PF11864 DUF3384: Domain of un 90.2 19 0.00041 34.9 20.4 166 56-235 151-329 (464)
257 KOG0413|consensus 90.1 1.9 4.1E-05 44.2 9.0 128 137-281 945-1075(1529)
258 PF12830 Nipped-B_C: Sister ch 90.1 10 0.00022 31.6 12.6 142 42-194 10-167 (187)
259 PF13001 Ecm29: Proteasome sta 89.4 12 0.00025 36.7 13.9 218 93-334 249-491 (501)
260 PF01603 B56: Protein phosphat 89.4 20 0.00043 34.1 15.3 235 36-284 129-375 (409)
261 COG5209 RCD1 Uncharacterized p 88.9 6.1 0.00013 33.6 9.8 131 192-329 126-266 (315)
262 PF12231 Rif1_N: Rap1-interact 88.7 21 0.00045 33.4 23.3 264 50-330 4-302 (372)
263 PF12830 Nipped-B_C: Sister ch 88.4 13 0.00029 30.8 13.8 74 124-202 9-82 (187)
264 PF14225 MOR2-PAG1_C: Cell mor 88.3 16 0.00034 32.3 12.7 146 32-193 103-253 (262)
265 KOG4464|consensus 88.0 17 0.00037 33.9 12.7 106 219-334 109-231 (532)
266 PF14726 RTTN_N: Rotatin, an a 87.6 6.6 0.00014 28.8 8.3 69 249-328 29-97 (98)
267 PF14225 MOR2-PAG1_C: Cell mor 87.6 19 0.00042 31.7 17.8 176 123-331 64-254 (262)
268 PF11864 DUF3384: Domain of un 87.5 29 0.00062 33.6 18.9 94 179-279 229-330 (464)
269 PF10274 ParcG: Parkin co-regu 86.7 16 0.00035 30.1 11.0 71 165-236 38-109 (183)
270 PF00790 VHS: VHS domain; Int 86.5 3.3 7.3E-05 32.6 6.9 74 252-334 44-121 (140)
271 cd03565 VHS_Tom1 VHS domain fa 86.4 5.4 0.00012 31.5 8.0 77 252-337 40-121 (141)
272 PF06685 DUF1186: Protein of u 86.4 22 0.00047 31.1 13.2 71 80-162 72-152 (249)
273 PF08324 PUL: PUL domain; Int 86.3 2.9 6.2E-05 37.1 7.2 124 50-174 121-253 (268)
274 cd03567 VHS_GGA VHS domain fam 85.7 6.3 0.00014 31.1 7.9 73 208-280 39-117 (139)
275 KOG0301|consensus 85.3 42 0.00091 33.4 15.5 164 90-260 553-726 (745)
276 cd00197 VHS_ENTH_ANTH VHS, ENT 84.7 8.5 0.00018 29.0 8.2 70 252-330 39-114 (115)
277 PF12463 DUF3689: Protein of u 84.7 20 0.00043 32.4 11.5 126 160-285 4-179 (303)
278 PF10521 DUF2454: Protein of u 84.5 18 0.00038 32.4 11.3 70 124-193 120-202 (282)
279 KOG0392|consensus 84.3 34 0.00075 36.7 14.2 239 80-333 76-327 (1549)
280 PF10521 DUF2454: Protein of u 84.2 30 0.00066 30.9 12.8 116 165-280 119-254 (282)
281 KOG0803|consensus 84.1 52 0.0011 36.0 15.9 198 125-331 43-263 (1312)
282 PF14500 MMS19_N: Dos2-interac 84.0 30 0.00064 30.6 18.7 217 47-282 6-240 (262)
283 cd03561 VHS VHS domain family; 83.4 7.9 0.00017 30.2 7.7 94 92-194 15-112 (133)
284 smart00638 LPD_N Lipoprotein N 83.1 14 0.0003 36.9 11.1 95 78-191 439-542 (574)
285 KOG1949|consensus 83.0 55 0.0012 33.0 17.2 238 78-333 126-373 (1005)
286 KOG1525|consensus 82.7 38 0.00083 36.9 14.3 148 165-332 259-406 (1266)
287 KOG4464|consensus 82.3 44 0.00095 31.3 18.0 73 56-129 63-145 (532)
288 PF12031 DUF3518: Domain of un 81.8 15 0.00032 31.8 8.9 84 53-136 138-229 (257)
289 KOG2038|consensus 81.6 65 0.0014 32.8 14.9 106 123-238 304-411 (988)
290 PF08389 Xpo1: Exportin 1-like 81.2 20 0.00042 28.1 9.5 127 54-189 3-148 (148)
291 cd03568 VHS_STAM VHS domain fa 81.0 14 0.0003 29.4 8.2 74 79-152 35-110 (144)
292 PF13001 Ecm29: Proteasome sta 80.7 44 0.00095 32.7 13.3 185 36-235 227-442 (501)
293 cd03569 VHS_Hrs_Vps27p VHS dom 80.6 13 0.00027 29.5 7.9 74 79-152 39-114 (142)
294 PF04821 TIMELESS: Timeless pr 80.1 42 0.00091 29.7 13.1 171 80-280 12-209 (266)
295 PF04821 TIMELESS: Timeless pr 79.8 22 0.00048 31.5 10.0 73 262-334 132-211 (266)
296 PF12726 SEN1_N: SEN1 N termin 79.6 33 0.0007 35.4 12.5 132 50-193 452-584 (727)
297 KOG4524|consensus 79.5 16 0.00034 37.8 9.7 98 76-175 798-899 (1014)
298 KOG2073|consensus 79.0 40 0.00087 34.9 12.5 176 82-261 191-376 (838)
299 PF12726 SEN1_N: SEN1 N termin 78.8 51 0.0011 34.0 13.6 57 179-235 495-552 (727)
300 PF10274 ParcG: Parkin co-regu 78.5 37 0.0008 28.1 11.1 78 78-156 35-113 (183)
301 KOG0392|consensus 78.4 42 0.00091 36.1 12.4 229 41-281 78-327 (1549)
302 KOG0413|consensus 77.5 17 0.00036 37.8 9.1 130 179-333 945-1075(1529)
303 KOG1525|consensus 77.0 24 0.00052 38.3 10.7 148 123-280 259-406 (1266)
304 PF09324 DUF1981: Domain of un 76.8 14 0.00031 26.3 6.5 67 248-328 15-85 (86)
305 KOG1832|consensus 76.7 16 0.00036 37.5 8.8 177 30-208 536-786 (1516)
306 PF08216 CTNNBL: Catenin-beta- 76.4 4.2 9.1E-05 30.2 3.7 44 98-142 63-106 (108)
307 smart00288 VHS Domain present 76.4 15 0.00032 28.7 7.1 70 124-193 38-110 (133)
308 KOG2199|consensus 75.8 9 0.0002 35.3 6.3 77 251-336 46-123 (462)
309 PF04499 SAPS: SIT4 phosphatas 75.3 42 0.00092 32.5 11.2 73 239-311 51-127 (475)
310 PF14666 RICTOR_M: Rapamycin-i 75.3 53 0.0012 28.3 12.6 149 33-193 44-224 (226)
311 PF12031 DUF3518: Domain of un 75.2 7.3 0.00016 33.6 5.3 82 96-178 139-229 (257)
312 smart00802 UME Domain in UVSB 73.1 28 0.00061 26.0 7.5 79 165-248 11-95 (107)
313 KOG0891|consensus 72.3 86 0.0019 36.7 13.9 223 50-281 492-721 (2341)
314 PF14726 RTTN_N: Rotatin, an a 71.8 30 0.00065 25.4 7.1 68 205-274 28-95 (98)
315 PF11791 Aconitase_B_N: Aconit 70.7 9.3 0.0002 30.3 4.5 99 125-236 24-123 (154)
316 cd03572 ENTH_epsin_related ENT 69.8 48 0.001 25.4 10.2 87 188-279 24-119 (122)
317 PLN03076 ARF guanine nucleotid 68.9 2.2E+02 0.0048 32.7 23.5 179 52-238 1150-1378(1780)
318 PF04499 SAPS: SIT4 phosphatas 68.9 60 0.0013 31.5 10.6 115 165-281 21-150 (475)
319 PF12231 Rif1_N: Rap1-interact 68.8 1E+02 0.0022 28.8 18.7 228 50-280 103-353 (372)
320 PF00790 VHS: VHS domain; Int 68.8 15 0.00033 28.8 5.6 70 124-193 43-117 (140)
321 PF12463 DUF3689: Protein of u 67.1 98 0.0021 28.0 13.5 128 118-246 4-182 (303)
322 PF12074 DUF3554: Domain of un 66.9 1E+02 0.0023 28.2 16.3 197 78-283 19-239 (339)
323 KOG1822|consensus 66.6 2.4E+02 0.0051 32.3 15.0 218 61-283 854-1092(2067)
324 KOG2149|consensus 66.6 1.1E+02 0.0025 28.5 11.3 113 83-196 60-172 (393)
325 PF08506 Cse1: Cse1; InterPro 66.5 1.1E+02 0.0025 28.5 21.8 251 56-326 57-370 (370)
326 KOG2085|consensus 66.5 1.2E+02 0.0025 28.6 12.4 239 29-283 166-418 (457)
327 KOG2149|consensus 66.5 1.1E+02 0.0024 28.6 11.2 118 124-243 59-177 (393)
328 KOG1848|consensus 65.2 2.2E+02 0.0048 31.4 17.9 61 51-111 898-959 (1610)
329 KOG1087|consensus 65.0 31 0.00068 33.2 7.7 75 252-335 40-116 (470)
330 PF11229 DUF3028: Protein of u 64.4 1.4E+02 0.0031 28.9 13.5 235 79-330 95-352 (589)
331 PF08711 Med26: TFIIS helical 64.3 20 0.00043 22.7 4.5 35 295-329 13-48 (53)
332 PF08389 Xpo1: Exportin 1-like 64.1 26 0.00056 27.3 6.3 62 208-274 83-148 (148)
333 PF11229 DUF3028: Protein of u 63.8 1.5E+02 0.0032 28.9 14.4 256 11-279 64-353 (589)
334 PF06743 FAST_1: FAST kinase-l 63.1 40 0.00087 22.9 6.1 68 58-127 3-70 (71)
335 PF04388 Hamartin: Hamartin pr 63.0 1.6E+02 0.0035 30.1 12.7 60 136-195 81-141 (668)
336 KOG0891|consensus 62.8 76 0.0016 37.1 11.2 194 81-276 565-760 (2341)
337 PF08064 UME: UME (NUC010) dom 62.4 62 0.0013 24.1 7.7 79 165-248 11-95 (107)
338 PF08767 CRM1_C: CRM1 C termin 62.3 1.3E+02 0.0027 27.6 16.8 179 139-331 43-244 (319)
339 PF03378 CAS_CSE1: CAS/CSE pro 62.2 1.5E+02 0.0033 28.4 11.8 110 42-153 28-147 (435)
340 PF04388 Hamartin: Hamartin pr 62.1 1.9E+02 0.0041 29.6 14.3 91 167-261 72-163 (668)
341 PLN03076 ARF guanine nucleotid 61.3 3.1E+02 0.0067 31.7 19.0 239 39-284 1181-1494(1780)
342 KOG2073|consensus 60.8 1.6E+02 0.0034 30.9 12.1 137 123-261 101-250 (838)
343 smart00509 TFS2N Domain in the 60.6 40 0.00087 23.2 5.8 37 294-330 34-70 (75)
344 PF03378 CAS_CSE1: CAS/CSE pro 60.5 1.6E+02 0.0035 28.2 14.0 138 80-218 25-185 (435)
345 PLN03205 ATR interacting prote 59.8 1.5E+02 0.0033 27.8 11.1 160 79-239 321-519 (652)
346 KOG2005|consensus 59.4 2E+02 0.0044 29.0 15.2 65 167-239 642-706 (878)
347 PF08713 DNA_alkylation: DNA a 59.1 1.1E+02 0.0023 25.7 12.0 141 83-248 53-195 (213)
348 PF08713 DNA_alkylation: DNA a 58.7 21 0.00045 30.2 5.0 133 50-206 62-196 (213)
349 PF01365 RYDR_ITPR: RIH domain 58.1 47 0.001 28.1 7.1 101 115-218 35-153 (207)
350 PF06012 DUF908: Domain of Unk 56.7 87 0.0019 28.7 9.0 75 97-172 238-323 (329)
351 KOG2038|consensus 56.6 1.1E+02 0.0023 31.4 9.7 102 81-192 304-407 (988)
352 PF01365 RYDR_ITPR: RIH domain 55.9 18 0.0004 30.5 4.2 118 30-152 33-169 (207)
353 cd08050 TAF6 TATA Binding Prot 55.4 90 0.002 28.9 8.9 73 80-153 209-298 (343)
354 PF12074 DUF3554: Domain of un 53.6 1.8E+02 0.0039 26.7 16.3 197 122-335 21-239 (339)
355 KOG1822|consensus 52.8 4.2E+02 0.009 30.6 18.9 112 124-237 959-1089(2067)
356 PF12783 Sec7_N: Guanine nucle 52.5 1.2E+02 0.0025 24.6 8.3 77 78-155 70-149 (168)
357 PF12783 Sec7_N: Guanine nucle 51.5 1.3E+02 0.0028 24.3 9.7 80 117-197 67-149 (168)
358 cd08050 TAF6 TATA Binding Prot 50.4 1.3E+02 0.0029 27.8 9.1 101 125-236 180-297 (343)
359 PF14666 RICTOR_M: Rapamycin-i 49.8 1.7E+02 0.0037 25.2 14.3 128 179-330 78-224 (226)
360 PF08216 CTNNBL: Catenin-beta- 49.4 27 0.00058 26.1 3.5 39 227-267 66-104 (108)
361 PF01417 ENTH: ENTH domain; I 48.8 68 0.0015 24.5 6.0 92 224-331 20-121 (125)
362 PF07923 N1221: N1221-like pro 48.6 33 0.00072 30.9 4.9 56 205-260 58-126 (293)
363 cd00183 TFIIS_I N-terminal dom 48.4 81 0.0018 21.7 5.8 35 295-329 37-71 (76)
364 COG5101 CRM1 Importin beta-rel 47.6 1.4E+02 0.0031 29.9 8.9 113 179-298 497-620 (1053)
365 PF03130 HEAT_PBS: PBS lyase H 46.3 29 0.00062 18.4 2.5 13 181-193 1-13 (27)
366 KOG2213|consensus 45.4 2.7E+02 0.0058 26.2 18.6 197 46-259 67-288 (460)
367 KOG1993|consensus 45.4 3.7E+02 0.0081 27.9 16.0 158 81-241 699-869 (978)
368 KOG4524|consensus 45.0 1.1E+02 0.0023 32.2 8.0 96 122-219 802-901 (1014)
369 PF12765 Cohesin_HEAT: HEAT re 45.0 24 0.00052 21.2 2.3 27 300-326 16-42 (42)
370 smart00567 EZ_HEAT E-Z type HE 44.9 41 0.00088 18.1 3.1 13 180-192 2-14 (30)
371 KOG1993|consensus 44.9 3.8E+02 0.0082 27.9 21.0 75 207-283 740-816 (978)
372 cd06561 AlkD_like A new struct 44.4 1.3E+02 0.0027 24.9 7.6 75 126-206 108-182 (197)
373 PF07923 N1221: N1221-like pro 44.2 62 0.0013 29.1 5.9 37 75-111 54-90 (293)
374 PF04869 Uso1_p115_head: Uso1 44.2 2.5E+02 0.0054 25.6 15.3 144 136-281 51-233 (312)
375 KOG2676|consensus 44.0 28 0.00061 31.9 3.5 62 100-161 375-438 (478)
376 PLN03205 ATR interacting prote 43.9 2.8E+02 0.0062 26.1 12.5 159 124-284 324-521 (652)
377 KOG1087|consensus 43.2 1.3E+02 0.0029 29.0 8.1 94 89-191 13-109 (470)
378 KOG0301|consensus 42.0 3.9E+02 0.0084 27.1 18.8 149 128-282 549-707 (745)
379 PF12397 U3snoRNP10: U3 small 41.6 1.5E+02 0.0033 22.3 10.6 69 79-153 4-75 (121)
380 PF14500 MMS19_N: Dos2-interac 41.3 2.5E+02 0.0055 24.8 16.4 183 42-239 40-240 (262)
381 KOG4231|consensus 40.9 26 0.00056 33.7 2.9 71 165-235 328-398 (763)
382 KOG2611|consensus 40.9 3.5E+02 0.0076 26.3 21.5 262 45-311 16-307 (698)
383 PF09758 FPL: Uncharacterised 40.8 1.4E+02 0.0031 23.8 6.6 124 111-234 14-147 (149)
384 PF14631 FancD2: Fanconi anaem 39.4 6.2E+02 0.013 28.7 15.6 138 39-183 430-572 (1426)
385 KOG2011|consensus 39.2 3.3E+02 0.0071 29.3 10.6 62 217-282 297-358 (1048)
386 PF13925 Katanin_con80: con80 38.4 2E+02 0.0042 23.3 7.4 71 38-110 26-98 (164)
387 KOG2005|consensus 38.3 4.5E+02 0.0097 26.8 12.7 66 81-153 452-519 (878)
388 KOG2229|consensus 38.0 2.2E+02 0.0048 27.7 8.4 140 166-325 17-160 (616)
389 KOG2022|consensus 38.0 5.1E+02 0.011 27.3 14.6 133 96-241 482-624 (982)
390 PF11791 Aconitase_B_N: Aconit 37.7 1.8E+02 0.004 23.2 6.7 101 80-193 21-122 (154)
391 COG5234 CIN1 Beta-tubulin fold 35.4 4.9E+02 0.011 26.7 10.5 284 50-356 207-514 (993)
392 PF03522 KCl_Cotrans_1: K-Cl C 35.4 12 0.00026 20.3 -0.0 17 326-342 10-26 (30)
393 KOG1788|consensus 35.2 4.1E+02 0.0088 28.9 10.2 68 82-149 467-535 (2799)
394 KOG2199|consensus 34.8 2E+02 0.0043 27.0 7.4 74 78-151 42-117 (462)
395 PF09758 FPL: Uncharacterised 34.5 1.5E+02 0.0032 23.7 5.9 118 75-192 20-147 (149)
396 PF09324 DUF1981: Domain of un 34.3 1.7E+02 0.0037 20.7 8.5 73 72-149 8-85 (86)
397 PF04869 Uso1_p115_head: Uso1 34.2 3.6E+02 0.0079 24.5 15.9 154 81-234 34-229 (312)
398 KOG0803|consensus 34.2 5.3E+02 0.011 28.8 11.5 75 209-284 43-117 (1312)
399 PF06012 DUF908: Domain of Unk 34.0 2E+02 0.0044 26.4 7.6 57 224-282 239-300 (329)
400 PF11935 DUF3453: Domain of un 33.9 3.1E+02 0.0068 23.8 8.5 71 258-331 1-72 (239)
401 cd03562 CID CID (CTD-Interacti 33.9 2E+02 0.0043 21.4 7.1 87 135-231 17-103 (114)
402 PF12054 DUF3535: Domain of un 33.6 4.4E+02 0.0096 25.4 12.1 217 55-282 103-345 (441)
403 PF12054 DUF3535: Domain of un 33.6 4.4E+02 0.0096 25.4 13.4 112 95-210 101-213 (441)
404 cd03562 CID CID (CTD-Interacti 33.1 2E+02 0.0044 21.3 6.6 85 177-272 17-101 (114)
405 PF08064 UME: UME (NUC010) dom 32.7 2.1E+02 0.0045 21.2 7.2 70 207-282 11-86 (107)
406 cd06561 AlkD_like A new struct 31.4 1.6E+02 0.0035 24.3 6.2 73 168-247 108-180 (197)
407 KOG2676|consensus 31.2 68 0.0015 29.5 3.8 59 143-201 376-436 (478)
408 PF13925 Katanin_con80: con80 31.0 2.9E+02 0.0062 22.4 8.1 68 80-152 31-98 (164)
409 KOG4231|consensus 30.8 1.4E+02 0.0031 29.0 5.9 68 126-193 331-398 (763)
410 KOG1924|consensus 30.5 6.4E+02 0.014 26.2 17.5 94 101-194 161-263 (1102)
411 PTZ00479 RAP Superfamily; Prov 29.6 5E+02 0.011 24.7 11.4 111 39-159 82-193 (435)
412 PF14631 FancD2: Fanconi anaem 29.2 2.5E+02 0.0053 31.7 8.4 132 88-226 442-573 (1426)
413 PF07539 DRIM: Down-regulated 29.2 92 0.002 24.6 3.9 35 297-331 12-46 (141)
414 KOG2312|consensus 28.2 14 0.00031 36.6 -0.9 121 136-259 48-170 (847)
415 cd00197 VHS_ENTH_ANTH VHS, ENT 27.3 2.6E+02 0.0057 20.7 9.6 69 208-276 38-112 (115)
416 KOG2213|consensus 26.9 5.5E+02 0.012 24.3 16.0 142 124-274 62-221 (460)
417 cd07064 AlkD_like_1 A new stru 26.3 3.3E+02 0.0072 23.0 7.2 108 83-206 82-191 (208)
418 PF06743 FAST_1: FAST kinase-l 25.8 2.2E+02 0.0047 19.3 5.7 66 100-167 3-68 (71)
419 KOG1791|consensus 25.0 6.7E+02 0.014 28.4 10.1 205 118-332 1434-1661(1758)
420 PF14764 SPG48: AP-5 complex s 24.2 6.6E+02 0.014 24.3 14.4 94 220-327 323-442 (459)
421 PF09205 DUF1955: Domain of un 23.7 3.7E+02 0.008 21.2 7.8 35 204-238 13-48 (161)
422 smart00802 UME Domain in UVSB 23.4 3.2E+02 0.0069 20.4 6.6 70 207-282 11-86 (107)
423 TIGR00117 acnB aconitate hydra 23.3 4.2E+02 0.0092 27.8 8.2 62 163-235 64-125 (844)
424 KOG2029|consensus 23.3 4.6E+02 0.01 26.3 8.0 68 118-187 286-355 (697)
425 PF12397 U3snoRNP10: U3 small 22.7 3.4E+02 0.0073 20.4 10.8 65 124-194 7-74 (121)
426 PF07571 DUF1546: Protein of u 22.5 3E+02 0.0065 19.7 6.2 56 52-108 19-76 (92)
427 KOG1791|consensus 22.2 1.2E+03 0.026 26.6 13.8 204 76-280 1434-1661(1758)
428 PF12331 DUF3636: Protein of u 22.1 3.3E+02 0.0071 21.8 5.8 57 120-176 77-147 (149)
429 KOG2022|consensus 22.0 4.3E+02 0.0094 27.8 7.8 107 41-152 505-619 (982)
430 PF08454 RIH_assoc: RyR and IP 21.8 3.5E+02 0.0076 20.2 8.5 42 220-261 66-107 (109)
431 cd03565 VHS_Tom1 VHS domain fa 21.7 4E+02 0.0087 20.9 10.0 72 209-280 40-116 (141)
432 PF12612 TFCD_C: Tubulin foldi 21.4 3.9E+02 0.0085 22.1 6.7 27 126-152 10-36 (193)
433 PF11640 TAN: Telomere-length 21.0 4.3E+02 0.0093 21.0 6.8 29 168-196 7-35 (155)
434 PF12331 DUF3636: Protein of u 20.9 3.8E+02 0.0083 21.4 5.9 40 179-218 108-147 (149)
435 PF07539 DRIM: Down-regulated 20.4 1.4E+02 0.003 23.6 3.4 28 249-276 16-43 (141)
No 1
>KOG0166|consensus
Probab=100.00 E-value=1.5e-66 Score=475.56 Aligned_cols=339 Identities=61% Similarity=0.964 Sum_probs=322.6
Q ss_pred ChhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC--CCChhHHHHHHHHHHHH
Q psy664 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP--KNRLSMVRNSVWVLSNL 66 (379)
Q Consensus 1 ~~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l 66 (379)
|||+.++++|++|.|++||.|++.++++ ++.+|+.+++.|++++|+.++ +....+.|+++|+|+||
T Consensus 143 e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNl 222 (514)
T KOG0166|consen 143 EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNL 222 (514)
T ss_pred hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHH
Confidence 6899999999999999999999999988 899999999999999999999 33458999999999999
Q ss_pred hCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHH
Q psy664 67 CRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRA 146 (379)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~ 146 (379)
|++++|.+.+.....++|.|..++++.|+++..+|||+++||++++++.++.+++.|++++|+.+|.+.+..++.+|+++
T Consensus 223 crgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRa 302 (514)
T KOG0166|consen 223 CRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRA 302 (514)
T ss_pred HcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCchhhHHHhhcCcHHHHHHhhc-CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHH
Q psy664 147 VGNIVTGDDQQTQVILNCSALMCLLHLIQ-SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRK 225 (379)
Q Consensus 147 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~ 225 (379)
+|||++|++.+++.+++.|++|.|..++. ++...++++|||+++||++|++++++++++.|++|.|+++|+++++++|+
T Consensus 303 iGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK 382 (514)
T KOG0166|consen 303 IGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK 382 (514)
T ss_pred ccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999998 55677999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHH
Q psy664 226 EAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLD 305 (379)
Q Consensus 226 ~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~ 305 (379)
+|+|+|+|+++.++++++.+|++.|++++|+++|...|.+++..++.+|.+|+..++.....++ ++++.+|+++||++
T Consensus 383 EAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~--n~~~~~IEe~ggld 460 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT--NPLAIMIEEAGGLD 460 (514)
T ss_pred HHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHccChh
Confidence 9999999999999999999999999999999999999999999999999999999988753221 89999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCcccccCCC
Q psy664 306 KIEFLQSHENIEIYQKAFDIIEHYFGSEEEDTRVAP 341 (379)
Q Consensus 306 ~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~~~~~~ 341 (379)
+|+.||+|++++||++|+.||++||.+++++++..|
T Consensus 461 kiE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~ 496 (514)
T KOG0166|consen 461 KIENLQSHENEEIYKKAYKIIDTYFSEEDDEDDQQP 496 (514)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCCcccccccc
Confidence 999999999999999999999999999876654334
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.8e-65 Score=435.33 Aligned_cols=353 Identities=55% Similarity=0.927 Sum_probs=333.2
Q ss_pred ChhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CC--ChhHHHHHHHHHHH
Q psy664 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KN--RLSMVRNSVWVLSN 65 (379)
Q Consensus 1 ~~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~--~~~~~~~a~~~L~~ 65 (379)
+||+.+++.|++|.|++||.+.+.+|++ ++.|||.+++.|++++++.++ ++ +..+.|+++|+|+|
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 5899999999999999999999999988 899999999999999999999 44 45899999999999
Q ss_pred HhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHH
Q psy664 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145 (379)
Q Consensus 66 l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~ 145 (379)
||++++|.+..-.....+|.|.+++.+.|+++..+|||+++||++++.+.++.+++.|..++|+++|.+++..++.+|++
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHH
Q psy664 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRK 225 (379)
Q Consensus 146 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~ 225 (379)
.+|||+++++.+++.++++|+++.+..+|.++...+|++|||+|+||++|+.++++++++.+++|+|+++|.+.+.++++
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhc-CCcchHHHHHHHhc
Q psy664 226 EAAWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQT-GSVNPYVVLIEECY 302 (379)
Q Consensus 226 ~a~~~l~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~-~~~~~~~~~i~~~g 302 (379)
+|||+++|.++++ .+++++++++.|++++|+++|...|.++.+.+++++.|++..++.+..++ ...+.|..++++.|
T Consensus 388 EACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Ag 467 (526)
T COG5064 388 EACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAG 467 (526)
T ss_pred HHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcc
Confidence 9999999998654 47899999999999999999999999999999999999999998876655 34668999999999
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCcccccCCCCcccCCCCCCcccccCC
Q psy664 303 GLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEEDTRVAPCVTHDASGAQEFTFAGA 358 (379)
Q Consensus 303 ~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (379)
|++.|..+|++.|..||.+|+.||++||.+++.-++++|+ .....|.|.+.
T Consensus 468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lape-----t~g~tftfg~~ 518 (526)
T COG5064 468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPE-----TAGNTFTFGSN 518 (526)
T ss_pred cHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcCcc-----ccCCeeecCCC
Confidence 9999999999999999999999999999988655679998 55668888764
No 3
>KOG0166|consensus
Probab=100.00 E-value=4.2e-39 Score=295.30 Aligned_cols=321 Identities=23% Similarity=0.341 Sum_probs=288.6
Q ss_pred hhhhhhCCChHHHHhhcCCCC-CCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 3 TRMVIDAGAVPVFIQLLLSPH-EDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~~-~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
+..++..|++|.|+..|.+.+ +.++. ..+.-..+++.|.+|.+++++ +++..+++.|.|+|+|++.
T Consensus 102 i~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIag 181 (514)
T KOG0166|consen 102 IDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAG 181 (514)
T ss_pred HHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcccc
Confidence 567888899999999998654 56655 456667899999999999999 9999999999999999999
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFHADP-DVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
+....+..+...|+++.|+.++...+. .....+.|+|+|+|.+.......-.-..++|.|..++.+.|+.+...|+|++
T Consensus 182 ds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl 261 (514)
T KOG0166|consen 182 DSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWAL 261 (514)
T ss_pred CChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 987778888889999999999998775 7888999999999988632222223346899999999999999999999999
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh-CcHHHHHH
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK-AEFKTRKE 226 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~-~~~~v~~~ 226 (379)
++++.+.++.++.+++.|++|.|+.+|.+.+..++..|+++++||+.|++.+.+.++++|++|.+..++.. ....++++
T Consensus 262 syLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 262 SYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred HHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999994 45669999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH
Q psy664 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK 306 (379)
Q Consensus 227 a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~ 306 (379)
|||+|+|++ +|++++++++++.|+++.|+.+|+..+.++++.|+|+++|++..+...+ ...+.+.|+++.
T Consensus 342 AcW~iSNIt-AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q---------i~yLv~~giI~p 411 (514)
T KOG0166|consen 342 ACWTISNIT-AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ---------IKYLVEQGIIKP 411 (514)
T ss_pred HHHHHHHhh-cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH---------HHHHHHcCCchh
Confidence 999999998 7999999999999999999999999999999999999999999876443 478889999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 307 IEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 307 l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
+..++..++..+...+...|++++...
T Consensus 412 lcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 412 LCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887643
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-39 Score=277.23 Aligned_cols=293 Identities=25% Similarity=0.349 Sum_probs=263.4
Q ss_pred HHHHhCCChHHHHhcC-CC-ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q psy664 34 TMSLDNNILYPLIDKP-KN-RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDG 111 (379)
Q Consensus 34 ~~i~~~g~i~~Ll~lL-~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~ 111 (379)
+.+++.|++|.+++++ +. ..-++-.|+|+|+|++++.....+.++..|++|.++++|.+++.++++++.|+|+|++.+
T Consensus 108 q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD 187 (526)
T COG5064 108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187 (526)
T ss_pred hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence 6789999999999999 44 444455999999999999988888889999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCCC--hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHH
Q psy664 112 PNEKIQAVIDAGVCRRLVELLMHDQ--HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAV 189 (379)
Q Consensus 112 ~~~~~~~~~~~g~i~~L~~lL~~~~--~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 189 (379)
++..++.+++.|+++.++.++.++. .++.+.+.|+|+|++.+.......-.-...+|.|.+++.+.++++...|||+|
T Consensus 188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi 267 (526)
T COG5064 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI 267 (526)
T ss_pred chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 9999999999999999999998864 48899999999999998655554444456799999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhcCchHHHHHHHHhCc------------------------------------------HHHHHHH
Q psy664 190 SNITAGNRQQIQAVIDANIFPSLIEILQKAE------------------------------------------FKTRKEA 227 (379)
Q Consensus 190 ~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~------------------------------------------~~v~~~a 227 (379)
+.++.+..+.++.+++.|+.+.|+.+|.+.+ ..+|++|
T Consensus 268 SYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEa 347 (526)
T COG5064 268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEA 347 (526)
T ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhh
Confidence 9999999999999999999999999887632 4679999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHH
Q psy664 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKI 307 (379)
Q Consensus 228 ~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l 307 (379)
||+|+|++ +|+.++++++++.+++++|+.+|.+-+.++++.|||++.|....+.. .+.....+.+.|+++.|
T Consensus 348 CWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~-------~PD~iryLv~qG~IkpL 419 (526)
T COG5064 348 CWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN-------RPDIIRYLVSQGFIKPL 419 (526)
T ss_pred heeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC-------CchHHHHHHHccchhHH
Confidence 99999998 89999999999999999999999999999999999999999887654 33567889999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 308 EFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 308 ~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
..+++..+..|-+.+...+++.....+
T Consensus 420 c~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 420 CDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred HHHHhccCccchhhhHHHHHHHHhhhh
Confidence 999999888888999999998887654
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=297.04 Aligned_cols=320 Identities=16% Similarity=0.104 Sum_probs=286.5
Q ss_pred hhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCC
Q psy664 4 RMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGK 70 (379)
Q Consensus 4 ~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~ 70 (379)
+.+.+.|+++.|+.||.+.+.++++ +.+.+..+++.|++|.|+++| +.+...++.++|+|+|++.+.
T Consensus 398 ~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n 477 (2102)
T PLN03200 398 RKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV 477 (2102)
T ss_pred HHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 4566789999999999999888877 578899999999999999999 888899999999999999877
Q ss_pred CCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q psy664 71 TPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNI 150 (379)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl 150 (379)
+.....+...|++|.|+++|.+++.+++.+|+|+|+|++.++++.+..+.+.|+++.|+++|++.+...+..|+|+|.|+
T Consensus 478 denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 478 DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL 557 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56667778899999999999999999999999999999998766666666789999999999999999999999999999
Q ss_pred hcCCch-------------------------------------hhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 151 VTGDDQ-------------------------------------QTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 151 ~~~~~~-------------------------------------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
+.+.+. .++.....|+++.|.++++++++.+++.|+|+|.|++
T Consensus 558 i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 558 VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 643221 1111224689999999999999999999999999999
Q ss_pred cCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHH
Q psy664 194 AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNG 273 (379)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~ 273 (379)
.+++++++.++..|.+++++.++++++.+++++++|+|.|+...++.+++..+++.|++++|+++|++++.+++..++.+
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987888888888999999999999999999999999999
Q ss_pred HHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 274 LENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 274 L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
|.|++..++.. ..+.+.|++..|.+++.+.+++.++.|.+.|.+++...+
T Consensus 718 LanLl~~~e~~-----------~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 718 LANLLSDPEVA-----------AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHcCchHH-----------HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 99999987643 456678999999999999999999999999999987765
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.5e-34 Score=295.27 Aligned_cols=318 Identities=19% Similarity=0.187 Sum_probs=266.4
Q ss_pred hhhhhhhCCChHHHHhhcCCCC-CCccc------------CchhHHHHHhCCChHHHHhcC-CCC---------hhHHHH
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPH-EDQVT------------HPSVETMSLDNNILYPLIDKP-KNR---------LSMVRN 58 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~-~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~---------~~~~~~ 58 (379)
.+..+++.|++|.|+++|++.+ ..+++ ++++|+.+++.|++++|++++ +++ ..++++
T Consensus 223 ~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~ 302 (2102)
T PLN03200 223 SISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQEN 302 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHH
Confidence 5778999999999999998744 46666 689999999999999999999 433 346899
Q ss_pred HHHHHHHHhCCCCC-----------CCC-------------------------------------------------h--
Q psy664 59 SVWVLSNLCRGKTP-----------PPD-------------------------------------------------F-- 76 (379)
Q Consensus 59 a~~~L~~l~~~~~~-----------~~~-------------------------------------------------~-- 76 (379)
++|+|+|+|.+..+ ... .
T Consensus 303 AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~ 382 (2102)
T PLN03200 303 AMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQER 382 (2102)
T ss_pred HHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHH
Confidence 99999999985321 000 0
Q ss_pred -----------------HhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHH
Q psy664 77 -----------------AKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139 (379)
Q Consensus 77 -----------------~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i 139 (379)
+...++++.|+.++...+.+++.+++|+|++++.++.+.++.+.+.|+++.|+++|.+++..+
T Consensus 383 V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~i 462 (2102)
T PLN03200 383 IIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQ 462 (2102)
T ss_pred HHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 000123344555566667889999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC
Q psy664 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA 219 (379)
Q Consensus 140 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~ 219 (379)
++.|+++++|++.+++.++..+.+.|++|.|+++|.+++..++++|+|+|+|++.++++....+.++|.++.|+++|.++
T Consensus 463 Q~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg 542 (2102)
T PLN03200 463 QEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG 542 (2102)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999876544444455789999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHH
Q psy664 220 EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIE 299 (379)
Q Consensus 220 ~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~ 299 (379)
+++++++|+|+|.|++..++.++ +++++.+|.++++.++..++.+|.+++...+.... ..+...
T Consensus 543 d~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~-------~~~g~~ 606 (2102)
T PLN03200 543 GPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL-------VREGSA 606 (2102)
T ss_pred CHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH-------HHHhhh
Confidence 99999999999999986666553 47788899999999999999999999886654321 123344
Q ss_pred HhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCcc
Q psy664 300 ECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE 335 (379)
Q Consensus 300 ~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~ 335 (379)
..||++.|..|+.|+++++++.|.++|.+||....+
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 679999999999999999999999999999997644
No 7
>KOG4224|consensus
Probab=99.96 E-value=4.4e-27 Score=203.34 Aligned_cols=317 Identities=17% Similarity=0.173 Sum_probs=270.4
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCC
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRG 69 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~ 69 (379)
++..+...|++.++.+|-++++..+|. +.+.|..++..|++|.|+.++ +.+..++..++-+++|++.+
T Consensus 159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh
Confidence 456688999999999988888887776 789999999999999999999 99999999999999999987
Q ss_pred CCCCCChHhHhh--hHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 70 KTPPPDFAKVAP--ALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 70 ~~~~~~~~~~~~--~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
. ..++.....+ ++|.|++++.++++.++..|..+|++|+.+. +.+..+++.|.+|.++++|+++........+.|+
T Consensus 239 ~-~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI 316 (550)
T KOG4224|consen 239 R-RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACI 316 (550)
T ss_pred H-HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence 6 3444445544 9999999999999999999999999999887 5667799999999999999999888999999999
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHH
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE 226 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~ 226 (379)
.||+... -..-.+.+.|++..|+++|...+ .+++..|..+++|+++.+......+.++|.+|.++.++.++...++.+
T Consensus 317 rnisihp-lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 317 RNISIHP-LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred hhccccc-CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence 9999653 44456789999999999998876 669999999999999888889999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHH-----h
Q psy664 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEE-----C 301 (379)
Q Consensus 227 a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~-----~ 301 (379)
...+++.+.. +......+.+.|+++.|+..+.+...+++.++..+|.|+....+.. ...++- .
T Consensus 396 isac~a~Lal--~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Y----------arviEawd~P~~ 463 (550)
T KOG4224|consen 396 ISACIAQLAL--NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHY----------ARVIEAWDHPVQ 463 (550)
T ss_pred HHHHHHHHHh--ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHH----------HHHHHHhcCcch
Confidence 9999999853 4556778999999999999999999999999999999999865543 333332 3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 302 YGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 302 g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
|.-..|.+++.+..-.++..+.+-|.++.++.
T Consensus 464 gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 464 GIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 44455666676666667777777777776543
No 8
>KOG4224|consensus
Probab=99.95 E-value=7e-27 Score=202.11 Aligned_cols=318 Identities=17% Similarity=0.156 Sum_probs=273.6
Q ss_pred hhhhhhCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCC
Q psy664 3 TRMVIDAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGK 70 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~ 70 (379)
.-.++.-+++..|+.-+.+++.++|- -..+|..+...|++.++.++- +.+..++++++.+|.|+....
T Consensus 119 k~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~ 198 (550)
T KOG4224|consen 119 KGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR 198 (550)
T ss_pred ceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh
Confidence 34566778888888777777766665 567788999999999999966 899999999999999999876
Q ss_pred CCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcC--cHHHHHHhhcCCChHHHHHHHHHHH
Q psy664 71 TPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAG--VCRRLVELLMHDQHKVVSAALRAVG 148 (379)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~i~~~al~~L~ 148 (379)
+.++..+..|.+|.|+.++++.|++++..++.++++|+-+. ..++.+.+.+ +++.|++++++++++++-.|-.+|+
T Consensus 199 -EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~-~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 199 -ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR-RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALR 276 (550)
T ss_pred -hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH-HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHh
Confidence 66777788999999999999999999999999999999665 4667777777 9999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHH-HHHHH
Q psy664 149 NIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK-TRKEA 227 (379)
Q Consensus 149 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~-v~~~a 227 (379)
|++... ++...+.+.|.+|.++++++++......+...+|.|++.+. -.-..+.+.|++.+|+++|..+|.+ ++-.|
T Consensus 277 nlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~dnEeiqchA 354 (550)
T KOG4224|consen 277 NLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAGDNEEIQCHA 354 (550)
T ss_pred hhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcCCchhhhhhH
Confidence 999765 55556889999999999999888777788889999986543 3344577889999999999998755 99999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHH
Q psy664 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKI 307 (379)
Q Consensus 228 ~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l 307 (379)
..+|.|+. +.+......+.+.|.++.+..++-+....++..+..++..+.-... ....+-+.|.+..|
T Consensus 355 vstLrnLA-asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~-----------~k~~lld~gi~~iL 422 (550)
T KOG4224|consen 355 VSTLRNLA-ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN-----------DKEALLDSGIIPIL 422 (550)
T ss_pred HHHHHHHh-hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc-----------cHHHHhhcCCccee
Confidence 99999986 5566777788999999999999999889999998888887776433 34678899999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCccc
Q psy664 308 EFLQSHENIEIYQKAFDIIEHYFGSEEED 336 (379)
Q Consensus 308 ~~l~~~~~~~v~~~a~~il~~~~~~~~~~ 336 (379)
..+..+++++++..|...|.||.++-++-
T Consensus 423 Ip~t~s~s~Ev~gNaAaAL~Nlss~v~~Y 451 (550)
T KOG4224|consen 423 IPWTGSESEEVRGNAAAALINLSSDVEHY 451 (550)
T ss_pred ecccCccchhhcccHHHHHHhhhhhhHHH
Confidence 99999999999999999999999887654
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=1.2e-21 Score=190.24 Aligned_cols=312 Identities=18% Similarity=0.206 Sum_probs=255.8
Q ss_pred ChhhhhhhCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 1 ~~~~~~~~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
|++..|.+.|++|.|.+++++++.+++. ++..|..+++.|++|+|+.+| ++ +.+..++.+|.++|.
T Consensus 322 ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 322 ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM 399 (708)
T ss_pred HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc
Confidence 5788899999999999999999877666 889999999999999999999 43 355668899999999
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
.+ ..+..+...+++|.+++++.. +++.+...+++.+.|++.+. .+.+.+++.++++.|+...-.....+ .++.+
T Consensus 400 dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlI 474 (708)
T PF05804_consen 400 DD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLI 474 (708)
T ss_pred CH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHH
Confidence 76 566666778999999997654 56778888899999999887 56788888899999998865543322 45799
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC--cHHHH
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSP-KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA--EFKTR 224 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~--~~~v~ 224 (379)
+|++..++.....+. +++..|++++.++ +.+...++.++++|++..+.+..+.+.+.+++|.+.++|..+ ++++.
T Consensus 475 RNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~ 552 (708)
T PF05804_consen 475 RNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLL 552 (708)
T ss_pred HHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHH
Confidence 999987754443332 4677777777665 589999999999999876666666677789999999999765 56899
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhc
Q psy664 225 KEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECY 302 (379)
Q Consensus 225 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g 302 (379)
-+++..++.++ .++.....+.+.|+++.|+++|.. +|.+++..++.++++++.+.+.. ..++.+.+
T Consensus 553 LE~Vi~~gtla--~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr----------~~ll~~~~ 620 (708)
T PF05804_consen 553 LEVVILLGTLA--SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR----------EVLLKETE 620 (708)
T ss_pred HHHHHHHHHHH--CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH----------HHHHhccc
Confidence 99999999885 477888888999999999999976 57899999999999999987654 25678889
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 303 GLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 303 ~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
+...+..++++.|.+|++.|...|+-+.+.+
T Consensus 621 ~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 621 IPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998887777555433
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=1.9e-17 Score=161.21 Aligned_cols=295 Identities=16% Similarity=0.173 Sum_probs=234.8
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCCc-cc--------CchhHHHHHhCCChHHHHhcC--CCChhHHHHHHHHHHHHhCCC
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHEDQ-VT--------HPSVETMSLDNNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGK 70 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~v-~~--------~~~~r~~i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~ 70 (379)
....|++.|++|.|+.+|++++... .- ++++|..+...+.+|.+++++ .++..+...+++++.|++..+
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 3568999999999999998765321 11 778999999999999999998 556667778999999999987
Q ss_pred CCCCChHhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHH
Q psy664 71 TPPPDFAKVAPALACLSRLL-FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVG 148 (379)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~ 148 (379)
...+.+...++++.|++.. +..|+-+ +..+.|++.++......+. +++..|+.++.. ++++....++++|+
T Consensus 444 -rnaqlm~~g~gL~~L~~ra~~~~D~lL----lKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLa 516 (708)
T PF05804_consen 444 -RNAQLMCEGNGLQSLMKRALKTRDPLL----LKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILA 516 (708)
T ss_pred -HHHHHHHhcCcHHHHHHHHHhcccHHH----HHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 4556666667888888754 4444332 3578899988754444343 478888888776 47889999999999
Q ss_pred HhhcCCchhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC--cHHHH
Q psy664 149 NIVTGDDQQTQVILNCSALMCLLHLIQSP--KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA--EFKTR 224 (379)
Q Consensus 149 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~--~~~v~ 224 (379)
|+...+..+.+.+.+.+++|.+.++|..+ .+++..+++..++.++ .+++....+.++|+++.++.++... |.++.
T Consensus 517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla-~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA-SDPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-CCHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 99987777888888899999999999754 3689999999999986 5777888888999999999999864 78999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH-HHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhcc
Q psy664 225 KEAAWAITNATSGGTPDQIRYL-IQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYG 303 (379)
Q Consensus 225 ~~a~~~l~nl~~~~~~~~~~~l-~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~ 303 (379)
-+.++++.+++ .+.. .+..+ .+.+++.+|+++++++++.+++.|-.+|.-++.+..+|.++ .......+.+..|
T Consensus 596 lQil~~f~~ll-~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r---i~~~kF~~hN~~W 670 (708)
T PF05804_consen 596 LQILYVFYQLL-FHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER---IRREKFRWHNAQW 670 (708)
T ss_pred HHHHHHHHHHH-cChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH---hhHHHHHHHHHHH
Confidence 99999999998 4444 44454 56899999999999999999999999999999999988653 3334445556667
Q ss_pred HHHHHH
Q psy664 304 LDKIEF 309 (379)
Q Consensus 304 l~~l~~ 309 (379)
++.++.
T Consensus 671 Le~v~~ 676 (708)
T PF05804_consen 671 LEMVES 676 (708)
T ss_pred HHHHhc
Confidence 777754
No 11
>KOG1048|consensus
Probab=99.73 E-value=7.1e-16 Score=147.13 Aligned_cols=308 Identities=19% Similarity=0.213 Sum_probs=228.9
Q ss_pred hHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCC--CCCh
Q psy664 12 VPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTP--PPDF 76 (379)
Q Consensus 12 i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~--~~~~ 76 (379)
+|-.+.+|.+.++.++- +...|..+.+.|+|+.|+.++ +.+.+++++|||+|.||..++.. ....
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 56677888888777766 778889999999999999999 99999999999999999998765 4455
Q ss_pred HhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC--------------ChHHHH
Q psy664 77 AKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD--------------QHKVVS 141 (379)
Q Consensus 77 ~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--------------~~~i~~ 141 (379)
+...+.+|.++++|+. .|.++++.+..+|+||++.+ .....++ ...+..|...+..+ +..+..
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 5667999999999986 79999999999999999883 3333333 44555555444311 234556
Q ss_pred HHHHHHHHhhcCCchhhHHHhhc-CcHHHHH-------------------------------------------------
Q psy664 142 AALRAVGNIVTGDDQQTQVILNC-SALMCLL------------------------------------------------- 171 (379)
Q Consensus 142 ~al~~L~nl~~~~~~~~~~~~~~-~~l~~L~------------------------------------------------- 171 (379)
.+.+||+|++....+.++.+.++ |+++.|+
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 66666666665444444333332 2232222
Q ss_pred ----------------------------------------------------Hhh-cCCChhhHHHHHHHHHHhhcCChH
Q psy664 172 ----------------------------------------------------HLI-QSPKESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 172 ----------------------------------------------------~lL-~~~~~~v~~~a~~~l~nl~~~~~~ 198 (379)
.+| .+.+..+.+.++.+|-|++++...
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 122 233467788899999999886543
Q ss_pred H----HHHH-HhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC------CHHHH
Q psy664 199 Q----IQAV-IDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL------DAKII 267 (379)
Q Consensus 199 ~----~~~~-~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~------d~~v~ 267 (379)
. ...+ .+...++.+++++..+++.+.+.++.+|.|+.. +.. .+.++..++++.|++.|... +.++.
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~--d~r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR--DIR-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc--Cch-hhhhhhcchHHHHHHhCcCCCCCcCchHHHH
Confidence 2 2333 567899999999999999999999999999853 333 34555688999999999753 25888
Q ss_pred HHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCc
Q psy664 268 QVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE-NIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 268 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~-~~~v~~~a~~il~~~~~~~~ 334 (379)
..++.+|.+++...... +..+.+.+++++|..+..+. ++.+.+.|..++..+|...|
T Consensus 630 ~~vc~tl~niv~~~~~n----------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLN----------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHhHHHHHHHhHHH----------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999755433 45667899999999888764 56899999999999998765
No 12
>KOG4199|consensus
Probab=99.72 E-value=2.2e-15 Score=129.98 Aligned_cols=258 Identities=16% Similarity=0.185 Sum_probs=204.5
Q ss_pred hhhhCCChHHHHhhcCC--CCCCccc------------CchhHHHHHhCCChHHHHhcC--CCChhHHHHHHHHHHHHhC
Q psy664 5 MVIDAGAVPVFIQLLLS--PHEDQVT------------HPSVETMSLDNNILYPLIDKP--KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 5 ~~~~~g~i~~L~~lL~s--~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~ 68 (379)
.+.+.-++..++++|.. ++.++-- ++.+|..+++.++++.+...| .....+.|.++|+++.|..
T Consensus 140 dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~ 219 (461)
T KOG4199|consen 140 DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLT 219 (461)
T ss_pred chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcC
Confidence 35666778888888854 3333322 888999999999999999777 4444799999999999998
Q ss_pred CCCCCCC---------hHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC-Ch
Q psy664 69 GKTPPPD---------FAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD-QH 137 (379)
Q Consensus 69 ~~~~~~~---------~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~ 137 (379)
.++-... .+...+++..|...++- -|+++...++.+|+.|+-.+ +..+.+.+.|++..|++++.+. +.
T Consensus 220 dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~ 298 (461)
T KOG4199|consen 220 DDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQ 298 (461)
T ss_pred CCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchh
Confidence 8754332 23445678888888874 36999999999999999775 6778899999999999999883 33
Q ss_pred H---HHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh--cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHH
Q psy664 138 K---VVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI--QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSL 212 (379)
Q Consensus 138 ~---i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 212 (379)
. ....++..|+.++ |++.....+++.|+++.++.++ +..++.|..+++.+++-++-..|++-..+++.|.-...
T Consensus 299 ~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~a 377 (461)
T KOG4199|consen 299 GNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLA 377 (461)
T ss_pred hHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHH
Confidence 3 4467888888887 6778888899999999999988 34569999999999999999999999999999999999
Q ss_pred HHHHHhC--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHH
Q psy664 213 IEILQKA--EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266 (379)
Q Consensus 213 i~ll~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 266 (379)
++.|+.- ...++++|||+|.|++ .++.++...+...| ++.|+..-....+..
T Consensus 378 vqAmkahP~~a~vQrnac~~IRNiv-~rs~~~~~~~l~~G-iE~Li~~A~~~h~tc 431 (461)
T KOG4199|consen 378 VQAMKAHPVAAQVQRNACNMIRNIV-VRSAENRTILLANG-IEKLIRTAKANHETC 431 (461)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHH-HhhhhccchHHhcc-HHHHHHHHHhcCccH
Confidence 9998764 3578999999999998 66667776777665 666666555444433
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.71 E-value=5.8e-15 Score=128.00 Aligned_cols=236 Identities=22% Similarity=0.218 Sum_probs=189.2
Q ss_pred hHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q psy664 78 KVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ 156 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~ 156 (379)
...+-+..|+.+|+. .|+.++..++.++++.+..+ ...+.+.+.|+++.+..+|..+++.++..|+++|.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 456778999999985 58999999999999998776 6888899999999999999999999999999999999976443
Q ss_pred hhHHHhhcCcHHHHHHhhcC--CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHH
Q psy664 157 QTQVILNCSALMCLLHLIQS--PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA 234 (379)
Q Consensus 157 ~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl 234 (379)
+. .+ + ..++.+.+.+.+ .+..++..+..+|.||+..+.. +.++ .+.++.++.++..++..+|..++++|.|+
T Consensus 88 ~~-~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 QE-QI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HH-HH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 33 23 2 246666665433 3688999999999999755432 3333 25799999999999999999999999998
Q ss_pred hcCCCHHHHHHHHHcCChHHHHHhhccC-CHHHHHHHHHHHHHHHHHcHHhhhh----cCCcchHHHHHHHhc-cHHHHH
Q psy664 235 TSGGTPDQIRYLIQQGCIEPFCELLTLL-DAKIIQVALNGLENILKLGEEEAKQ----TGSVNPYVVLIEECY-GLDKIE 308 (379)
Q Consensus 235 ~~~~~~~~~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~~~----~~~~~~~~~~i~~~g-~l~~l~ 308 (379)
+.++...+.++..+++..|+.+++.+ +.++...++..+.||...-.+.... .+.......++.+.+ +-++|.
T Consensus 162 --S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~ 239 (254)
T PF04826_consen 162 --SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ 239 (254)
T ss_pred --ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence 55888889999999999999999885 6788999999999997654433111 133445557777776 788999
Q ss_pred HhhcCCCHHHHHHH
Q psy664 309 FLQSHENIEIYQKA 322 (379)
Q Consensus 309 ~l~~~~~~~v~~~a 322 (379)
.|.+|++++|+.+.
T Consensus 240 ~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 240 ALANHPDPEVKEQV 253 (254)
T ss_pred HHHcCCCHHHhhhc
Confidence 99999999999874
No 14
>KOG1222|consensus
Probab=99.70 E-value=2.7e-15 Score=135.02 Aligned_cols=307 Identities=13% Similarity=0.097 Sum_probs=223.8
Q ss_pred ChhhhhhhCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 1 ~~~~~~~~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
|++..|.+.|.++.|++++.+.+++.+. +...|..+++.|.+|.+..+| ++. -...|...+..++.
T Consensus 336 eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~ 413 (791)
T KOG1222|consen 336 ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSC 413 (791)
T ss_pred cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhcc
Confidence 5778899999999999999999998876 678899999999999999999 332 12345666666766
Q ss_pred CCCCCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH------------------
Q psy664 69 GKTPPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV------------------ 129 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~------------------ 129 (379)
++ ..+......++++.+.+.+- ..+.++-...+..-.||+.+. .+.+.+++..++..|+
T Consensus 414 dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni 491 (791)
T KOG1222|consen 414 DD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI 491 (791)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence 65 56667777899999988654 344444444443334666443 2223333322233222
Q ss_pred -------------------Hhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHH
Q psy664 130 -------------------ELLM-HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP--KESIRKEACW 187 (379)
Q Consensus 130 -------------------~lL~-~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~ 187 (379)
..+. .+++.....++++++|+...+-.+.+.+.+..++|++-..|... ..++.....-
T Consensus 492 SqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi 571 (791)
T KOG1222|consen 492 SQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVI 571 (791)
T ss_pred hhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHH
Confidence 2222 34567788999999999988888889899999999999999754 3667778888
Q ss_pred HHHHhhcCChHHHHHHHhcCchHHHHHHHHhC--cHHHHHHHHHHHHHHhcCCCHHHHHHH-HHcCChHHHHHhhccCCH
Q psy664 188 AVSNITAGNRQQIQAVIDANIFPSLIEILQKA--EFKTRKEAAWAITNATSGGTPDQIRYL-IQQGCIEPFCELLTLLDA 264 (379)
Q Consensus 188 ~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~l-~~~~~i~~L~~lL~~~d~ 264 (379)
+++.++ .+......+..+++++.++++|+.. |.+..-+..+++..++ .+ ......+ .+...-.++++++++.+.
T Consensus 572 ~~GT~a-~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l-~H-e~tr~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 572 ACGTMA-RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFL-KH-ELTRRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred Hhhhhh-hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHH-HH-HHHHHHHHhhccchHHHHHHHhcccH
Confidence 888874 4556667777889999999999864 7788888999999987 44 3344444 466778899999999999
Q ss_pred HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHH
Q psy664 265 KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIE 317 (379)
Q Consensus 265 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~ 317 (379)
++++.+-.+|.-+..+..+|.++ ...-...+....|++..+.-|..+++.
T Consensus 649 eiRkVCDn~LdIiae~d~EWAKr---I~~EkFrwHNsQWLeMVEs~q~ddsEq 698 (791)
T KOG1222|consen 649 EIRKVCDNALDIIAEHDKEWAKR---IAGEKFRWHNSQWLEMVESQQRDDSEQ 698 (791)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH---HhhhhcccchhHHHHHHHHhhccchhh
Confidence 99999999999999999988653 111122445567888888777666554
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.67 E-value=8.4e-14 Score=134.02 Aligned_cols=319 Identities=16% Similarity=0.150 Sum_probs=242.1
Q ss_pred hCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCC
Q psy664 8 DAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPP 74 (379)
Q Consensus 8 ~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~ 74 (379)
..+..+.|...|.++++.|+. +......+.+.++++.++..+ +++.++...|+.+|.+++..+ +..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhH
Confidence 346678888999999888877 344456678899999999999 999999999999999999875 444
Q ss_pred ChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCC
Q psy664 75 DFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 75 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~ 154 (379)
..+...+.++.|.+++...+..++..++.++.+++..+++....+.+.|+++.++..++++|.-++..++.++..++. .
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~ 232 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-T 232 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-C
Confidence 444456678999999988889999999999999999999999999999999999999999999999999999999998 6
Q ss_pred chhhHHHhhcCcHHHHHHhhcCCChh-----hH-HHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHH
Q psy664 155 DQQTQVILNCSALMCLLHLIQSPKES-----IR-KEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAA 228 (379)
Q Consensus 155 ~~~~~~~~~~~~l~~L~~lL~~~~~~-----v~-~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~ 228 (379)
+...+.+.+.|+++.|.+++.+.+.+ +. --.....++++...+..+.... ..++..+.+++.+.|+..+..|.
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~ 311 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAF 311 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHH
Confidence 67788899999999999999665322 22 2233566777664444433222 24666777888889999999999
Q ss_pred HHHHHHhcCCCHHHHHHH-HHc-C----ChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHH-HHHHHh
Q psy664 229 WAITNATSGGTPDQIRYL-IQQ-G----CIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYV-VLIEEC 301 (379)
Q Consensus 229 ~~l~nl~~~~~~~~~~~l-~~~-~----~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~-~~i~~~ 301 (379)
.+++.+. .+.+....+ ... + ++..+.........+++..++.++.+++......... ...... ..+...
T Consensus 312 dtlg~ig--st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~--~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 312 DTLGQIG--STVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN--DILSITESWYESL 387 (503)
T ss_pred HHHHHHh--CCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH--HHHHHHHHHHHHh
Confidence 9999984 577777777 332 2 3444555556677799999999999998765531100 010111 122222
Q ss_pred --ccHH-HHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 302 --YGLD-KIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 302 --g~l~-~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
+-.. .+..+.+.|-++++..++.+|..++...
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 2333 6778888999999999999999887643
No 16
>KOG4199|consensus
Probab=99.66 E-value=6.4e-14 Score=121.02 Aligned_cols=281 Identities=13% Similarity=0.136 Sum_probs=224.3
Q ss_pred HHHhCCChHHHHhcC---CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhcC
Q psy664 35 MSLDNNILYPLIDKP---KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA-DPDVLADACWAISYLSD 110 (379)
Q Consensus 35 ~i~~~g~i~~Ll~lL---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~aL~~l~~ 110 (379)
.+.+..++..++++| .++.++......++..-|-..+-.++.+...+++|.+.+.|... ..++...++|++..+..
T Consensus 140 dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~ 219 (461)
T KOG4199|consen 140 DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLT 219 (461)
T ss_pred chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcC
Confidence 456677888899999 45566776777777888887766778888889999999777644 45788999999999886
Q ss_pred CCh---------HHHHHHHhcCcHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-h
Q psy664 111 GPN---------EKIQAVIDAGVCRRLVELLMHD-QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-E 179 (379)
Q Consensus 111 ~~~---------~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~ 179 (379)
+++ ...+.+.+.|++..|++.++.. ++.+...++.+|+.++.. ++..+.+.+.|+++.+++++.+.+ .
T Consensus 220 dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~ 298 (461)
T KOG4199|consen 220 DDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQ 298 (461)
T ss_pred CCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchh
Confidence 654 3446688888999999998863 688999999999999964 577788999999999999998754 3
Q ss_pred ---hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh--CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH
Q psy664 180 ---SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK--AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEP 254 (379)
Q Consensus 180 ---~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~ 254 (379)
...+.++..++-+ +|+++....+++.|..+.++.++.. .+|.+..+++.+++-++ -..+++-..+++.|+-..
T Consensus 299 ~~r~l~k~~lslLral-AG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~-LR~pdhsa~~ie~G~a~~ 376 (461)
T KOG4199|consen 299 GNRTLAKTCLSLLRAL-AGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC-LRSPDHSAKAIEAGAADL 376 (461)
T ss_pred hHHHHHHHHHHHHHHH-hCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH-hcCcchHHHHHhcchHHH
Confidence 3457777777777 5788888899999999999988753 58999999999999988 677888889999999999
Q ss_pred HHHhhccC--CHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy664 255 FCELLTLL--DAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 255 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~ 329 (379)
.+..|+.- ...+++++++.+.||...+... +..+-. .|+++|...-...++.....|...|+.+
T Consensus 377 avqAmkahP~~a~vQrnac~~IRNiv~rs~~~----------~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 377 AVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN----------RTILLA-NGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc----------cchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 99998763 3489999999999999887654 334434 4578887777777777777777777644
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.66 E-value=5.4e-14 Score=135.33 Aligned_cols=272 Identities=17% Similarity=0.219 Sum_probs=222.2
Q ss_pred HHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcC
Q psy664 45 LIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAG 123 (379)
Q Consensus 45 Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g 123 (379)
+...| +.+.+....++.+|..+..... ......+..+.+...|.++++.++..+++.+.++..+++...+.+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~---~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS---PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 56666 6667777788888888877542 2223678889999999999999999999999999998887788888899
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
+++.++.++.+++..+...|..+|.+++... ...+.+++.+.++.|.+++.+++..+|..++.++.+++..+++....+
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999765 444567788889999999999888999999999999999999999999
Q ss_pred HhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC--CH---H-HHHHHHHHHHHH
Q psy664 204 IDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL--DA---K-IIQVALNGLENI 277 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--d~---~-v~~~al~~L~~l 277 (379)
.++|+++.++..+.+.|.-++.+++..+..++. ++...+++.+.|+++.|++++... |+ . ..-..+..++++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence 999999999999999999999999999999964 778899999999999999999763 33 1 122233455555
Q ss_pred HHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 278 LKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
+...+.. +.... ..+++.+.++.++.++..+..|...+..+.+..
T Consensus 277 a~~~~~~---------v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 277 ARVSPQE---------VLELY--PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV 321 (503)
T ss_pred HhcChHH---------HHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH
Confidence 5532211 11111 234677788888999999999998888776543
No 18
>KOG2122|consensus
Probab=99.63 E-value=1e-14 Score=145.40 Aligned_cols=253 Identities=16% Similarity=0.163 Sum_probs=213.5
Q ss_pred CchhHHHHHhCCChHHHHhcC------CC-------ChhHHHHHHHHHHHHhCCCCCCCC-hHhHhhhHHHHHHhhcCCC
Q psy664 29 HPSVETMSLDNNILYPLIDKP------KN-------RLSMVRNSVWVLSNLCRGKTPPPD-FAKVAPALACLSRLLFHAD 94 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL------~~-------~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~d 94 (379)
++++|..|-+.|+++.+-+|+ .. ...+++.+..+|.||..++...+. ..-.+|++..++.-|.+..
T Consensus 328 DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p 407 (2195)
T KOG2122|consen 328 DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP 407 (2195)
T ss_pred cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh
Confidence 788999999999999998877 11 246788999999999999755443 3456899999999999888
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHH-hcCcHHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHH-hhcCcHHHHH
Q psy664 95 PDVLADACWAISYLSDGPNEKIQAVI-DAGVCRRLVEL-LMHDQHKVVSAALRAVGNIVTGDDQQTQVI-LNCSALMCLL 171 (379)
Q Consensus 95 ~~v~~~a~~aL~~l~~~~~~~~~~~~-~~g~i~~L~~l-L~~~~~~i~~~al~~L~nl~~~~~~~~~~~-~~~~~l~~L~ 171 (379)
+++..-...+|.||+..-+.+.+.++ +.|-+..|+.. ++..++......|.+|+||+....+++..+ .-.|+|..|+
T Consensus 408 eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLV 487 (2195)
T KOG2122|consen 408 EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLV 487 (2195)
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHH
Confidence 89999999999999977665555555 45889999988 555677888999999999998776666444 3468999999
Q ss_pred HhhcCC----ChhhHHHHHHHHHHhh---cCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHH
Q psy664 172 HLIQSP----KESIRKEACWAVSNIT---AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244 (379)
Q Consensus 172 ~lL~~~----~~~v~~~a~~~l~nl~---~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 244 (379)
.+|... .-.|.+.|-.+|.|++ +....+.|.+.+++.+..|+..|++....+..++|.+|.||. ..+++.-+
T Consensus 488 g~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLS-AR~p~DQq 566 (2195)
T KOG2122|consen 488 GTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARSPEDQQ 566 (2195)
T ss_pred hhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhh-cCCHHHHH
Confidence 999654 2678899999998864 467788899999999999999999999999999999999987 77888888
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 245 ~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
+|++.|.+..|.++++++...+.+-+..+|.|++.+-+
T Consensus 567 ~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 567 MLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999998764
No 19
>PRK09687 putative lyase; Provisional
Probab=99.61 E-value=8.7e-14 Score=123.38 Aligned_cols=252 Identities=16% Similarity=0.089 Sum_probs=165.9
Q ss_pred ChHHHHhhcCCCCCCcccCchh-HHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHH
Q psy664 11 AVPVFIQLLLSPHEDQVTHPSV-ETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSR 88 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~~~~~-r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 88 (379)
-++.|..+|.+++..++..... -..+-...+++.+..++ +.+..++..++|+|+.|-..... ...+++.|..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~ 97 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNN 97 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHH
Confidence 4667777777776655551000 01111233556666666 77778888888888887543211 3356677776
Q ss_pred h-hcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcH
Q psy664 89 L-LFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167 (379)
Q Consensus 89 l-L~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l 167 (379)
+ ++++++.|+..++.+|+++....... ...++..+...+.++++.++..++++|+.+.. ...+
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----------~~ai 161 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----------EAAI 161 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----------HHHH
Confidence 6 56677888888888888876433211 11245556667777788888888888876531 2356
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy664 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLI 247 (379)
Q Consensus 168 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~ 247 (379)
+.|..++.++++.||..|+++|+.+..+++ ..++.|+.++.+.+..||.+|+++|+.+ +++
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~~~------- 222 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR---KDK------- 222 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc---CCh-------
Confidence 778888888888888888888888733333 3556677888888888888888888874 232
Q ss_pred HcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc-CCCHHHHHHHHHHH
Q psy664 248 QQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS-HENIEIYQKAFDII 326 (379)
Q Consensus 248 ~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~-~~~~~v~~~a~~il 326 (379)
.+++.|+..|.+++ ++..+..+|+.+=. ...+..|..+++ +++..|..+|.+.|
T Consensus 223 --~av~~Li~~L~~~~--~~~~a~~ALg~ig~---------------------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 223 --RVLSVLIKELKKGT--VGDLIIEAAGELGD---------------------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred --hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---------------------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 24777777777755 45556666555432 123577778775 88999999998887
Q ss_pred HH
Q psy664 327 EH 328 (379)
Q Consensus 327 ~~ 328 (379)
.+
T Consensus 278 ~~ 279 (280)
T PRK09687 278 KR 279 (280)
T ss_pred hc
Confidence 64
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.60 E-value=3.9e-14 Score=110.02 Aligned_cols=117 Identities=30% Similarity=0.470 Sum_probs=110.5
Q ss_pred HHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChH
Q psy664 119 VIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 198 (379)
+++.|+++.+++++.++++.++..++++|++++...+.....+.+.|+++.+.++|.++++.++..|+|+++|++.+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56889999999999999999999999999999998888888889999999999999999999999999999999988888
Q ss_pred HHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 199 QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
....+.+.|+++.+++++...+.++++.++|+|.|++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7888889999999999999999999999999999986
No 21
>KOG1048|consensus
Probab=99.58 E-value=2.2e-14 Score=137.09 Aligned_cols=287 Identities=17% Similarity=0.202 Sum_probs=220.9
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChH--HHH
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNE--KIQ 117 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~--~~~ 117 (379)
-+|..+.+| +.++.++.+|+.-+..+|++++..+..+...+.||.|+.++.+.+.+++.+|||+|.||..+... +.-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 356667777 88999999999999999999977777667779999999999999999999999999999977655 777
Q ss_pred HHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC--------------CChhhH
Q psy664 118 AVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS--------------PKESIR 182 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~--------------~~~~v~ 182 (379)
.+.+.++++.++++|++ .|.++++....+|.|+++. |..+..++. ..++.|..-.-. .+.++-
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 78889999999999998 6889999999999999976 455554443 345554443311 136788
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhc-CchHHHHHHHHh------CcHHHHHHHHHHHHHHhcCCC----------------
Q psy664 183 KEACWAVSNITAGNRQQIQAVIDA-NIFPSLIEILQK------AEFKTRKEAAWAITNATSGGT---------------- 239 (379)
Q Consensus 183 ~~a~~~l~nl~~~~~~~~~~~~~~-~~i~~Li~ll~~------~~~~v~~~a~~~l~nl~~~~~---------------- 239 (379)
..++++|.|+++...+..+.+.+. |+|..|+..+++ .|.+..++++-.+.|+.-.-.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999998788888887766 899999988874 256677777777777641100
Q ss_pred ------------------------------------HHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcH
Q psy664 240 ------------------------------------PDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 240 ------------------------------------~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~ 282 (379)
+....++++..++.....+|.. .+..+.+.+..+|.|+.....
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0011123333445555555543 577899999999999988665
Q ss_pred HhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
.+. ...-+..+.+..++..|..|+..++..|.+.+..+|.|+.-+-.
T Consensus 552 ~~~-----~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 552 TWS-----EYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred cch-----hHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence 442 11223455899999999999999999999999999999988754
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.56 E-value=1.1e-13 Score=107.56 Aligned_cols=117 Identities=38% Similarity=0.545 Sum_probs=109.5
Q ss_pred HhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q psy664 77 AKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ 156 (379)
Q Consensus 77 ~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~ 156 (379)
+...|+++.+++++.++++.++..++++|++++.+.++....+++.|+++.++++|.++++.++..|+++|+|++.+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 34568999999999999999999999999999999888888899999999999999999999999999999999998877
Q ss_pred hhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 157 QTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 157 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
....+.+.|+++.+.+++...+..+++.++|++.|++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7888889999999999999999999999999999986
No 23
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.55 E-value=7.7e-13 Score=114.78 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=175.2
Q ss_pred HHhCCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh
Q psy664 36 SLDNNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN 113 (379)
Q Consensus 36 i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~ 113 (379)
.++.+-++.|+.+| +.++.+++.+.+++.+.+..+ .....+...|+++.+..+|.++++.++..|++++.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 46677789999999 678899999999999988765 556666677999999999999999999999999999997764
Q ss_pred HHHHHHHhcCcHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHH
Q psy664 114 EKIQAVIDAGVCRRLVELLMH--DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSN 191 (379)
Q Consensus 114 ~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 191 (379)
+...+ +. .++.+.+.+.+ -+..++..++++|.|++..++. ...+ .+.+|.+..+|..++..+|..+.++|.|
T Consensus 87 -n~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 -NQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred -hHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 33333 33 46666665444 3778999999999999865443 3333 3579999999999999999999999999
Q ss_pred hhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCHH-------------HHHHHHHc-CChHHHH
Q psy664 192 ITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPD-------------QIRYLIQQ-GCIEPFC 256 (379)
Q Consensus 192 l~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~~-------------~~~~l~~~-~~i~~L~ 256 (379)
+ +.++...+.++..+.+..++.+++.. +.++..++++.+.|+...-..+ -...+.+. .+.+.|.
T Consensus 161 L-S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~ 239 (254)
T PF04826_consen 161 L-SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ 239 (254)
T ss_pred h-ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence 9 46778888899999999999999886 6788999999999985321111 11122222 2555666
Q ss_pred HhhccCCHHHHHHH
Q psy664 257 ELLTLLDAKIIQVA 270 (379)
Q Consensus 257 ~lL~~~d~~v~~~a 270 (379)
.+..++|++|+..+
T Consensus 240 ~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 240 ALANHPDPEVKEQV 253 (254)
T ss_pred HHHcCCCHHHhhhc
Confidence 67777777777653
No 24
>KOG2122|consensus
Probab=99.51 E-value=4.5e-13 Score=133.96 Aligned_cols=265 Identities=15% Similarity=0.139 Sum_probs=213.0
Q ss_pred HHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC---------C---ChHHHHHHHHHHHHhcCCChHHHHHHHh-cCc
Q psy664 58 NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH---------A---DPDVLADACWAISYLSDGPNEKIQAVID-AGV 124 (379)
Q Consensus 58 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---------~---d~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~ 124 (379)
.|+.+|..++.+. +.+..+...|++..+..|++- . ...++.++..+|.||+.++..+...++. .|+
T Consensus 317 aA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 3444455555543 555556667888887777651 1 2478999999999999887766665555 499
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHhhcCcHHHHHHh-hcCCChhhHHHHHHHHHHhhcCChHHHHH
Q psy664 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDD-QQTQVILNCSALMCLLHL-IQSPKESIRKEACWAVSNITAGNRQQIQA 202 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 202 (379)
+..++..|.+..+++......+|.||+=.-+ ...+.+-+.|-+..|... |+..+....+..+.+||||++++.++...
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999999999999999999999995544 444556667888877765 46666788899999999999988888777
Q ss_pred HHhc-CchHHHHHHHHhC----cHHHHHHHHHHHHHHhc--CCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHH
Q psy664 203 VIDA-NIFPSLIEILQKA----EFKTRKEAAWAITNATS--GGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLE 275 (379)
Q Consensus 203 ~~~~-~~i~~Li~ll~~~----~~~v~~~a~~~l~nl~~--~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~ 275 (379)
+..- |.+..|+.+|... ...+...|-.+|.|..+ +....+.+.+.+++++..|+..|++..-.++.++|.+|-
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW 555 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW 555 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence 7654 8999999999764 45677888888888653 345677788899999999999999999999999999999
Q ss_pred HHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 276 NILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
|+.......+ ++|.+.|.+..|.+|+++.+.-|..-+...|.|+..-.
T Consensus 556 NLSAR~p~DQ----------q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 556 NLSARSPEDQ----------QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhcCCHHHH----------HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999888775 68999999999999999999999999999999988755
No 25
>PRK09687 putative lyase; Provisional
Probab=99.50 E-value=4.2e-12 Score=112.65 Aligned_cols=225 Identities=17% Similarity=0.064 Sum_probs=169.4
Q ss_pred CChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 40 NILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 40 g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
--++.|..+| +.+..++..++|+|..+-. ..+++.+..+++++|+.++..++|+|+.|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 3567888888 8899999999999987643 23778888899999999999999999999754321
Q ss_pred HHhcCcHHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy664 119 VIDAGVCRRLVEL-LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 119 ~~~~g~i~~L~~l-L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
....++.|..+ ++++++.++..|+.+||++....... ...+++.+...+.+++..||..|+++|+.+- ++
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~~ 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--DE 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--CH
Confidence 12356777777 67789999999999999986433211 1234566777888889999999999998773 22
Q ss_pred HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
..++.|+.++.+.++.++..|+++|+++- .+++. +++.|+..|.+.+..|+..+.++|+.+
T Consensus 159 ---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 ---------AAIPLLINLLKDPNGDVRNWAAFALNSNK-YDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 36788999999999999999999999972 33443 367788899999999999999999874
Q ss_pred HHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 278 LKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
-.. .+++.|...+.+++ ++..+...|.++=
T Consensus 220 ~~~---------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 220 KDK---------------------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred CCh---------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 321 12455555565554 4555665555543
No 26
>KOG1293|consensus
Probab=99.50 E-value=6.5e-12 Score=117.62 Aligned_cols=318 Identities=14% Similarity=0.103 Sum_probs=212.0
Q ss_pred hhhhhCCChHHHHhhcCCCCCCccc--------------CchhHHHHHhCCChHHHHhcC-CCC-hhHHHHHHHHHHHHh
Q psy664 4 RMVIDAGAVPVFIQLLLSPHEDQVT--------------HPSVETMSLDNNILYPLIDKP-KNR-LSMVRNSVWVLSNLC 67 (379)
Q Consensus 4 ~~~~~~g~i~~L~~lL~s~~~~v~~--------------~~~~r~~i~~~g~i~~Ll~lL-~~~-~~~~~~a~~~L~~l~ 67 (379)
..+++.|++|.++.++...+..... .....+.+.+.+.++.|+++| +++ ..++.....++.++.
T Consensus 45 ~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~If 124 (678)
T KOG1293|consen 45 ETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIF 124 (678)
T ss_pred chhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHH
Confidence 3578999999999999876643322 455567889999999999999 666 778888999999998
Q ss_pred CCCCC--CCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHH
Q psy664 68 RGKTP--PPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145 (379)
Q Consensus 68 ~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~ 145 (379)
..... .+.......+++.+..++..+...+...-+...+.++... +....++..|+.+.+.-++...+...+.+|+.
T Consensus 125 et~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~ 203 (678)
T KOG1293|consen 125 ETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILLMYLSSKLRLAALL 203 (678)
T ss_pred hcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHHHhhhHHHHHHHHH
Confidence 87632 2333345677887777766444555555555555555554 44445555666665555555444444445544
Q ss_pred HHH---HhhcCCchhhHHH----h--------------------------------------------------------
Q psy664 146 AVG---NIVTGDDQQTQVI----L-------------------------------------------------------- 162 (379)
Q Consensus 146 ~L~---nl~~~~~~~~~~~----~-------------------------------------------------------- 162 (379)
+++ ++...++.....+ .
T Consensus 204 ~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i 283 (678)
T KOG1293|consen 204 CLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLI 283 (678)
T ss_pred HhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHH
Confidence 444 3322221111000 0
Q ss_pred ---------------------------------------hcCcHHHHHHh------------------------------
Q psy664 163 ---------------------------------------NCSALMCLLHL------------------------------ 173 (379)
Q Consensus 163 ---------------------------------------~~~~l~~L~~l------------------------------ 173 (379)
+...++.+.++
T Consensus 284 ~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~ 363 (678)
T KOG1293|consen 284 VQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEY 363 (678)
T ss_pred HHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhh
Confidence 00000111111
Q ss_pred ----------------------hcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHH
Q psy664 174 ----------------------IQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAI 231 (379)
Q Consensus 174 ----------------------L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l 231 (379)
....+...+.+||.++.+++..-......+-..++..+++.++..++..++..+..+|
T Consensus 364 ~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai 443 (678)
T KOG1293|consen 364 GLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAI 443 (678)
T ss_pred hcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHH
Confidence 0123455666666666666432222222233446889999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh
Q psy664 232 TNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ 311 (379)
Q Consensus 232 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~ 311 (379)
+|++. ........++..|+++.+.+++.+.|+.++..++|+|.+++..++...+ ...+... +...|..+.
T Consensus 444 ~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k----~~~~~ki-----~a~~i~~l~ 513 (678)
T KOG1293|consen 444 CNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK----FQLLAKI-----PANLILDLI 513 (678)
T ss_pred HHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH----HHHHHHh-----hHHHHHHHH
Confidence 99984 4445566888999999999999999999999999999999988776543 2222222 357788899
Q ss_pred cCCCHHHHHHHHHHHHHhcCC
Q psy664 312 SHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 312 ~~~~~~v~~~a~~il~~~~~~ 332 (379)
+++++.|+++|+.+++|+.-+
T Consensus 514 nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 514 NDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999999999766
No 27
>KOG4500|consensus
Probab=99.47 E-value=5.6e-12 Score=112.53 Aligned_cols=288 Identities=13% Similarity=0.074 Sum_probs=207.6
Q ss_pred chhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC----CC---hHHHHHH
Q psy664 30 PSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH----AD---PDVLADA 101 (379)
Q Consensus 30 ~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~d---~~v~~~a 101 (379)
..+|...+..+.++.|.+.. +++.++..+.+++|+|+|+.+++.+..+...|+-..++.+|+. ++ .+...-+
T Consensus 77 ~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~ 156 (604)
T KOG4500|consen 77 SLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVA 156 (604)
T ss_pred HHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHH
Confidence 34455566777888888888 7788999999999999999999988888888887777777652 22 4777778
Q ss_pred HHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC----------------------------------------------C
Q psy664 102 CWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH----------------------------------------------D 135 (379)
Q Consensus 102 ~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----------------------------------------------~ 135 (379)
+..|.|-.-++++.+..+.+.|+++.|...+.- -
T Consensus 157 ~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v 236 (604)
T KOG4500|consen 157 FGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV 236 (604)
T ss_pred HHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh
Confidence 888888888888888889999999988865531 1
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC-CC-------hhhHHHHHHHHHHhhcCChHHHHHHHhcC
Q psy664 136 QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS-PK-------ESIRKEACWAVSNITAGNRQQIQAVIDAN 207 (379)
Q Consensus 136 ~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-------~~v~~~a~~~l~nl~~~~~~~~~~~~~~~ 207 (379)
++.+.+..+.+++..+. ++...-.+.+.|++..++.++++ ++ ....+.++..+.-+..|+ +..+.+...+
T Consensus 237 ~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p 314 (604)
T KOG4500|consen 237 REDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADP 314 (604)
T ss_pred ccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCc
Confidence 22233333344444332 22333345567888888888865 22 223344444444444454 4466666665
Q ss_pred -chHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHc
Q psy664 208 -IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-----LDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 208 -~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-----~d~~v~~~al~~L~~l~~~~ 281 (379)
+++.+...+.+.|.+.+..+.-+|+|+. ..++...++++.+.++.|++.|.. ++.+++..++.+|.|++--.
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfa--R~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFA--RRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhh--ccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 9999999999999999999999999985 456677789999999999999854 46689999999999998754
Q ss_pred HHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 282 EEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
++. ..+...|..+.+...+....+.+..+-+.-++.....
T Consensus 393 ~nk-----------a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 393 SNK-----------AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred Cch-----------hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 433 4567888888888777777666766666555554443
No 28
>KOG1222|consensus
Probab=99.44 E-value=9.2e-11 Score=106.26 Aligned_cols=305 Identities=16% Similarity=0.107 Sum_probs=216.7
Q ss_pred hhhhCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCC
Q psy664 5 MVIDAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTP 72 (379)
Q Consensus 5 ~~~~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~ 72 (379)
.|.+.+++..|++.|..++.+... -.++++.+.+.|++..|+++. ...++++......+-|++.+. .
T Consensus 299 KMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-g 377 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-G 377 (791)
T ss_pred HHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-c
Confidence 366778889999999887765433 568899999999999999999 888899999999999999987 4
Q ss_pred CCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHH-------
Q psy664 73 PPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAAL------- 144 (379)
Q Consensus 73 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al------- 144 (379)
..+.++..|.+|.+..++.++... .-|...+..++.++ .....+..+..++.++..+-+ .+.++-...+
T Consensus 378 lr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ 454 (791)
T KOG1222|consen 378 LRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLC 454 (791)
T ss_pred ccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 556667889999999999876431 22444555666554 455666667888888766433 2222222222
Q ss_pred -------------------------------HHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC-ChhhHHHHHHHHHHh
Q psy664 145 -------------------------------RAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP-KESIRKEACWAVSNI 192 (379)
Q Consensus 145 -------------------------------~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl 192 (379)
..++||+.........+++ .+.-|...+.+. +.....++..+++|+
T Consensus 455 lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL 532 (791)
T KOG1222|consen 455 LNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANL 532 (791)
T ss_pred hccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhc
Confidence 3344444433222222221 233344445444 367788999999999
Q ss_pred hcCChHHHHHHHhcCchHHHHHHHHhC--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--CCHHHHH
Q psy664 193 TAGNRQQIQAVIDANIFPSLIEILQKA--EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQ 268 (379)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~Li~ll~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~ 268 (379)
...+-+..+.+.+.+++|.+-..|..+ ..++.-+.+.+++.+ +.+......+...|+++.|+++|+. .|.+++.
T Consensus 533 ~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~--a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~ 610 (791)
T KOG1222|consen 533 KVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTM--ARDLDCARLLAPAKLIDTLIELLQACQEDDEFVV 610 (791)
T ss_pred ccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhh--hhhhHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence 877777777777889999999998865 567788888888876 4456666677889999999999976 5778888
Q ss_pred HHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHH
Q psy664 269 VALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIE 327 (379)
Q Consensus 269 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~ 327 (379)
..+..+..++.+.... .-++.+...--.+..|+++.|.+|++-|...|.
T Consensus 611 QiiyVF~Q~l~He~tr----------~~miket~~~AylIDLMHDkN~eiRkVCDn~Ld 659 (791)
T KOG1222|consen 611 QIIYVFLQFLKHELTR----------RLMIKETALGAYLIDLMHDKNAEIRKVCDNALD 659 (791)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHhhccchHHHHHHHhcccHHHHHHHHHHHH
Confidence 8889999998873322 135555556667889999999999986654443
No 29
>KOG4500|consensus
Probab=99.40 E-value=2.6e-11 Score=108.35 Aligned_cols=300 Identities=14% Similarity=0.083 Sum_probs=207.4
Q ss_pred hhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC----CCC----hhHHHHHHHHHH
Q psy664 5 MVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP----KNR----LSMVRNSVWVLS 64 (379)
Q Consensus 5 ~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL----~~~----~~~~~~a~~~L~ 64 (379)
.-++.|+++.|.+..+|++.++.+ +.+.|+.+.+.|+-..+++.| +.+ .+...-++..|.
T Consensus 82 ~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~ 161 (604)
T KOG4500|consen 82 YCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH 161 (604)
T ss_pred HhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence 346788999999999999877755 789999999999977777777 333 366667888888
Q ss_pred HHhCCCCCCCChHhHhhhHHHHHHhhc--CCC--------------------------------------------hHHH
Q psy664 65 NLCRGKTPPPDFAKVAPALACLSRLLF--HAD--------------------------------------------PDVL 98 (379)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~d--------------------------------------------~~v~ 98 (379)
|..-+.+.........|+++.|...+. .++ +++.
T Consensus 162 Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~ 241 (604)
T KOG4500|consen 162 NYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDID 241 (604)
T ss_pred HhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchh
Confidence 888776555555556677776665543 222 2333
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CC-------hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHH
Q psy664 99 ADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQ-------HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCL 170 (379)
Q Consensus 99 ~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~-------~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L 170 (379)
+.+...|.+.++++ ...-.+.+.|.+..++++++. ++ ......+.....-+.+|++..........+++.+
T Consensus 242 eM~feila~~aend-~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~ 320 (604)
T KOG4500|consen 242 EMIFEILAKAAEND-LVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFL 320 (604)
T ss_pred hHHHHHHHHHhcCc-ceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHH
Confidence 33344444444333 222234556777777777765 21 1222334444445556766555444444489999
Q ss_pred HHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh-----CcHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy664 171 LHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK-----AEFKTRKEAAWAITNATSGGTPDQIRY 245 (379)
Q Consensus 171 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~~ 245 (379)
.+.+.+.+......+.-+|+|+++.+.. +..+++.+++..|++++.. ++.+++..++.+|.|+.- .......
T Consensus 321 ~sw~~S~d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I--Pv~nka~ 397 (604)
T KOG4500|consen 321 ESWFRSDDSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI--PVSNKAH 397 (604)
T ss_pred HHHhcCCchhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc--cCCchhh
Confidence 9999999999999999999999876655 4457788999999999876 467889999999999854 4445557
Q ss_pred HHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHH
Q psy664 246 LIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIE 317 (379)
Q Consensus 246 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~ 317 (379)
+...|+.+.+...+....|.++-.-+.++..+....+.. .+++......+++|.....+++..
T Consensus 398 ~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~---------a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 398 FAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI---------ACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred ccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------HHHHhcCHHHHHHHHHhhhCCccc
Confidence 888999999999999988988888888887776654432 234444444566777777666543
No 30
>KOG2171|consensus
Probab=99.35 E-value=5.6e-10 Score=111.10 Aligned_cols=309 Identities=16% Similarity=0.132 Sum_probs=215.3
Q ss_pred CChHHHHhhcCCCCCCccc--------CchhHHHHHhCCChHHHHhcC-----CCChhHHHHHHHHHHHHhCCCC-CCCC
Q psy664 10 GAVPVFIQLLLSPHEDQVT--------HPSVETMSLDNNILYPLIDKP-----KNRLSMVRNSVWVLSNLCRGKT-PPPD 75 (379)
Q Consensus 10 g~i~~L~~lL~s~~~~v~~--------~~~~r~~i~~~g~i~~Ll~lL-----~~~~~~~~~a~~~L~~l~~~~~-~~~~ 75 (379)
++++.|.+..+|+++..|+ -+.....- ..+-++.++.++ +.+..++..++.++..++...+ ....
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT-LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence 3567777888999988888 11111111 122333444444 4555577789999888876552 2334
Q ss_pred hHhHhhhHHHHHHhh----cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHHHHH
Q psy664 76 FAKVAPALACLSRLL----FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRAVGN 149 (379)
Q Consensus 76 ~~~~~~~l~~L~~lL----~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~L~n 149 (379)
.......+|.++..+ ..+|.+....++.+|-.++...+......+. .++...+.+..+. ++.+|..|+.+|..
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 444566777666655 4567777888889998888776655544443 2555555555553 67778888877776
Q ss_pred hhcCCchhhH---------------------------------------------HHh-----hcC-------cHHHHHH
Q psy664 150 IVTGDDQQTQ---------------------------------------------VIL-----NCS-------ALMCLLH 172 (379)
Q Consensus 150 l~~~~~~~~~---------------------------------------------~~~-----~~~-------~l~~L~~ 172 (379)
++..-+...+ ..+ ..| +++.+..
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~ 355 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEA 355 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH
Confidence 6643111000 000 001 3345556
Q ss_pred hhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q psy664 173 LIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCI 252 (379)
Q Consensus 173 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i 252 (379)
++.+.+..-|++|..+|+-++.|..+.+...++ .+++.++..+.+++|.||..|+.+++.+. ..-...++.-....++
T Consensus 356 ~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~s-tdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 356 MLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMS-TDLQPEIQKKHHERLP 433 (1075)
T ss_pred HhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhh-hhhcHHHHHHHHHhcc
Confidence 778999999999999999999999998887555 78999999999999999999999999986 4444455555666788
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 253 EPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 253 ~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
+.|+..+++ ..++++..+..++.|+++...+.. ..+|...+.+. ++..|..++.+.+++.+...|.....
T Consensus 434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~-----l~pYLd~lm~~----~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSI-----LEPYLDGLMEK----KLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH-----HHHHHHHHHHH----HHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 899999987 466999999999999999877654 66777766332 67788899999999999888775543
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.35 E-value=5.1e-10 Score=103.54 Aligned_cols=288 Identities=13% Similarity=0.092 Sum_probs=193.2
Q ss_pred CChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhH-----hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q psy664 40 NILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKV-----APALACLSRLLFHADPDVLADACWAISYLSDGP 112 (379)
Q Consensus 40 g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~ 112 (379)
..+..++.++ ..+.++.+.+.-.+.-|..........+.. .+....++.+|..+|.-+...++..++.+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4556677777 667788888888888888876333333322 234556677888889999999999999887654
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHH
Q psy664 113 NEKIQAVIDAGVCRRLVELLMHD-QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP--KESIRKEACWAV 189 (379)
Q Consensus 113 ~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l 189 (379)
..........-..+.+...+..+ +...+.-++.++..+... +.++..+.+.++++.|..+|+.. +..++.+++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33222111112344556666654 467778888999999865 46667788888999999999763 468899999999
Q ss_pred HHhhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHcCChHHHHHhhc--c
Q psy664 190 SNITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGG-----TPDQIRYLIQQGCIEPFCELLT--L 261 (379)
Q Consensus 190 ~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~-----~~~~~~~l~~~~~i~~L~~lL~--~ 261 (379)
+-++-. ++....+...++++.++++++.. ..++.+-++.++.|++... .......++++|+++.+-.+.. .
T Consensus 212 WlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 998644 44556666779999999999875 5688899999999998643 2234446677776665444332 2
Q ss_pred CCHHHHHHHHHHHHHHHHHc--------HHhhh---------------------------------h-------------
Q psy664 262 LDAKIIQVALNGLENILKLG--------EEEAK---------------------------------Q------------- 287 (379)
Q Consensus 262 ~d~~v~~~al~~L~~l~~~~--------~~~~~---------------------------------~------------- 287 (379)
.|+++.... ..|...+... +...+ +
T Consensus 291 ~DedL~edl-~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 291 DDEDLTDDL-KFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CcHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 455444332 2222222111 00000 0
Q ss_pred -----cCC-------cchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 288 -----TGS-------VNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 288 -----~~~-------~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
+.+ .+.-...+++.|+-+.+.+|++|+|++|+..|...++.+.
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 000 1222346778999999999999999999999999988774
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.32 E-value=2.5e-10 Score=117.71 Aligned_cols=245 Identities=16% Similarity=0.112 Sum_probs=128.6
Q ss_pred hCCChHHHHhhcCCCCCCccc-CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHH
Q psy664 8 DAGAVPVFIQLLLSPHEDQVT-HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALAC 85 (379)
Q Consensus 8 ~~g~i~~L~~lL~s~~~~v~~-~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 85 (379)
..+.++.|+..|+++++.+|. -...-..+-..+.++.|...| +++..++..|+.+|..+..... ..+.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~ 688 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPA 688 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHH
Confidence 455667777777777666655 111111112344566677777 6677777777777776643211 1234
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcC
Q psy664 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCS 165 (379)
Q Consensus 86 L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~ 165 (379)
+...|.++|+.++..++.+|..+...+ ...++..|.++++.++..|+++|+.+-.
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~------------- 743 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD------------- 743 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC-------------
Confidence 555666667777777777666554221 1234455666666666666666665311
Q ss_pred cHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy664 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRY 245 (379)
Q Consensus 166 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 245 (379)
.+.|..++.++++.||..++.+|+.+..... ..++.|..++++.++.+|..|+.+|.++- ....
T Consensus 744 -~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g--~~~~---- 807 (897)
T PRK13800 744 -VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG--CPPD---- 807 (897)
T ss_pred -cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC--Ccch----
Confidence 1224445555556666666665555532211 12445555555555666666666665541 1111
Q ss_pred HHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHH
Q psy664 246 LIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDI 325 (379)
Q Consensus 246 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~i 325 (379)
+...+...|.+++..|+..++++|..+-. ...+..|..++.++++.|+..|...
T Consensus 808 -----~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------------------~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 808 -----DVAAATAALRASAWQVRQGAARALAGAAA---------------------DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred -----hHHHHHHHhcCCChHHHHHHHHHHHhccc---------------------cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 11234444555555555555555543311 0113445555556666666666666
Q ss_pred HHHh
Q psy664 326 IEHY 329 (379)
Q Consensus 326 l~~~ 329 (379)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 5554
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.30 E-value=5.7e-10 Score=115.12 Aligned_cols=243 Identities=16% Similarity=0.142 Sum_probs=183.1
Q ss_pred hCCChHHHHhhcCCCCCCccc--CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHH
Q psy664 8 DAGAVPVFIQLLLSPHEDQVT--HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALA 84 (379)
Q Consensus 8 ~~g~i~~L~~lL~s~~~~v~~--~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 84 (379)
..++++.|.++|++++..|+. -.......-.....+.|...| ++++.++..++.+|..+.... ..
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~ 717 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AA 717 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HH
Confidence 356789999999888877776 111111111122346677778 888899999999888864321 23
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc
Q psy664 85 CLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC 164 (379)
Q Consensus 85 ~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~ 164 (379)
.+.+.|.++|+.++..|+++|+.+.. .+.|..++.++++.++..+..+|+.+.... .
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~ 774 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------A 774 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------c
Confidence 56778899999999999999997631 234667899999999999999999886432 1
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHH
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 244 (379)
..++.|..+++++++.||..|+.+|+++-. +. .+.+.++..+.+.++.+|..|+++|..+- ++
T Consensus 775 ~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~---~~---- 837 (897)
T PRK13800 775 PAGDAVRALTGDPDPLVRAAALAALAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAA---AD---- 837 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhcc---cc----
Confidence 236788899999999999999999999832 21 23356788899999999999999999852 22
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHH
Q psy664 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFD 324 (379)
Q Consensus 245 ~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~ 324 (379)
..++.|..+|.+++..|+..+.++|..+- ... .....|...+++++.+|+..|..
T Consensus 838 -----~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~~~------------------~a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 838 -----VAVPALVEALTDPHLDVRKAAVLALTRWP--GDP------------------AARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred -----chHHHHHHHhcCCCHHHHHHHHHHHhccC--CCH------------------HHHHHHHHHHhCCCHHHHHHHHH
Confidence 23688999999999999999999999861 111 11466788899999999999998
Q ss_pred HHH
Q psy664 325 IIE 327 (379)
Q Consensus 325 il~ 327 (379)
.|+
T Consensus 893 aL~ 895 (897)
T PRK13800 893 ALA 895 (897)
T ss_pred HHh
Confidence 876
No 34
>KOG2160|consensus
Probab=99.28 E-value=2.6e-09 Score=94.44 Aligned_cols=189 Identities=19% Similarity=0.263 Sum_probs=161.0
Q ss_pred CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHH
Q psy664 92 HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLL 171 (379)
Q Consensus 92 ~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 171 (379)
+.+.+-+..|+.-|.+++.+-+ +..-++..|+...++..+++.+..+++.|+|+||.++.+++.....+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4467888999999999997764 455588889999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh--CcHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy664 172 HLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK--AEFKTRKEAAWAITNATSGGTPDQIRYLIQ 248 (379)
Q Consensus 172 ~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~ 248 (379)
..+.+.+ ..++..|..+++++...++.....+...+....|.+++++ .+.+++.-++..+..++. ........+..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~-~~~s~~d~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ-EDKSDEDIASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-hhhhhhhHHHH
Confidence 9998665 6788999999999999999999999988889999999999 578889999999999984 44444445566
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 249 QGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 249 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
.+....+..+..+.+.++.+.++.++...+..-.
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 6777778888888888999998888877766433
No 35
>KOG0168|consensus
Probab=99.28 E-value=1.9e-10 Score=110.41 Aligned_cols=217 Identities=14% Similarity=0.189 Sum_probs=179.5
Q ss_pred CCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHh-hcCCChHHHHHHHHHHHHhcCCChHH
Q psy664 39 NNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRL-LFHADPDVLADACWAISYLSDGPNEK 115 (379)
Q Consensus 39 ~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~aL~~l~~~~~~~ 115 (379)
.-++|.|+.+| ..+.++...||++|.+||.--.+....++..++||.|+.- +..+..++.++++.+|-+|+...+
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 44788999999 6788999999999999999876666777778999999864 456779999999999999997543
Q ss_pred HHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy664 116 IQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG-DDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA 194 (379)
Q Consensus 116 ~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 194 (379)
..++++|++...+.+|+-=...+++.|+.+.+|+|.. .++....++ ..+|.|..+|++.+.+..+.+|.++..++.
T Consensus 288 -~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 -KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred -HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 5688999999999999888888999999999999965 223334444 469999999999999999999999999865
Q ss_pred ---CChHHHHHHHhcCchHHHHHHHHhCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc
Q psy664 195 ---GNRQQIQAVIDANIFPSLIEILQKAE----FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL 261 (379)
Q Consensus 195 ---~~~~~~~~~~~~~~i~~Li~ll~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 261 (379)
+.++..+.+..+|++..+.+++.-.+ ..+....+.++.-++ .+++-....+.+.++...|..+|..
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~ms-S~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMS-SGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHc-cCChHHHHHHHHhhHHHHHHHHHhc
Confidence 67788899999999999999987653 344556667777765 7778888888889999998888753
No 36
>KOG0168|consensus
Probab=99.24 E-value=9.2e-10 Score=105.90 Aligned_cols=255 Identities=18% Similarity=0.187 Sum_probs=191.2
Q ss_pred HHHHhcC--CCChhHHHHHHHHHHHH-hCCCCCCCChHhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 43 YPLIDKP--KNRLSMVRNSVWVLSNL-CRGKTPPPDFAKVAPALACLSRLLFHA-DPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 43 ~~Ll~lL--~~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
+.|+.=| ..++..+-.+.-=|+.+ ..+.+....-+.++.++|.|+.+|+.+ +.++...||+||.||++.-+.-...
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3444444 33555554444444333 334434455556788999999999976 5999999999999999988888888
Q ss_pred HHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcC-C
Q psy664 119 VIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAG-N 196 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~ 196 (379)
+++.++||.|+..|.. .--++.+.++.+|-.|+... -..+++.|.+...+..|+--+..+++.|+.+..|+|.. .
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999988765 67789999999999999743 35578899999999999877889999999999999873 3
Q ss_pred hHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc--CCCHHHHHHHHHcCChHHHHHhhccCCHHHH----HHH
Q psy664 197 RQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS--GGTPDQIRYLIQQGCIEPFCELLTLLDAKII----QVA 270 (379)
Q Consensus 197 ~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~----~~a 270 (379)
++....++ ..+|.|..+|++.|.+....++.+++.++. .+.++..+.+...|.+.....|+...+.-+- ...
T Consensus 327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 44455555 469999999999999999999999998874 4678888899999999999999877644222 222
Q ss_pred HHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc
Q psy664 271 LNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS 312 (379)
Q Consensus 271 l~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~ 312 (379)
...|..++.. .......+.+.++.+.+..++.
T Consensus 405 Irmls~msS~----------~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 405 IRMLSLMSSG----------SPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHHHHHccC----------ChHHHHHHHHhhHHHHHHHHHh
Confidence 3333333332 2233466778888888877663
No 37
>KOG2171|consensus
Probab=99.23 E-value=1.2e-08 Score=101.93 Aligned_cols=258 Identities=16% Similarity=0.171 Sum_probs=178.4
Q ss_pred ChHHHHhcC-----CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcCCCh
Q psy664 41 ILYPLIDKP-----KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA--DPDVLADACWAISYLSDGPN 113 (379)
Q Consensus 41 ~i~~Ll~lL-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~aL~~l~~~~~ 113 (379)
.+|.++..+ ..+......+..+|..+.... +..-......++....+...+. ++.+|..|+..+..++..-+
T Consensus 203 llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap 281 (1075)
T KOG2171|consen 203 LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE-PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP 281 (1075)
T ss_pred HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH
Confidence 567777776 334444567777777777765 3222223445666666665554 47788888877776665422
Q ss_pred HHHHHHHh--cC-------------------------------------------------------cHHHHHHhhcCCC
Q psy664 114 EKIQAVID--AG-------------------------------------------------------VCRRLVELLMHDQ 136 (379)
Q Consensus 114 ~~~~~~~~--~g-------------------------------------------------------~i~~L~~lL~~~~ 136 (379)
...+..-. .. +++.+-.++.+++
T Consensus 282 ~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~ 361 (1075)
T KOG2171|consen 282 AMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE 361 (1075)
T ss_pred HHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC
Confidence 11111000 00 2233335566889
Q ss_pred hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHH
Q psy664 137 HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEIL 216 (379)
Q Consensus 137 ~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll 216 (379)
+.-+.+++.+|+.++.|........+ ..+++.++..|+++++.||..||.+++.++..-...++.....-+++.|+..+
T Consensus 362 w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l 440 (1075)
T KOG2171|consen 362 WKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL 440 (1075)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh
Confidence 99999999999999998776655433 35788888999999999999999999999988777788777778888999888
Q ss_pred HhC-cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH-HHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchH
Q psy664 217 QKA-EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIE-PFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPY 294 (379)
Q Consensus 217 ~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~-~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~ 294 (379)
.+. .++++..|+.++-|+......+.+.... .++++ .|.-++.++.+.+++.+..+|+.++..++.. ..+|
T Consensus 441 d~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~------F~pY 513 (1075)
T KOG2171|consen 441 DSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK------FIPY 513 (1075)
T ss_pred cccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh------hHhH
Confidence 775 6799999999999998655555544322 23455 4444556678899999999999999998876 4455
Q ss_pred HHHHHHhccHHHHHHhhc
Q psy664 295 VVLIEECYGLDKIEFLQS 312 (379)
Q Consensus 295 ~~~i~~~g~l~~l~~l~~ 312 (379)
.+.+ +..|.+.+.
T Consensus 514 ~d~~-----Mp~L~~~L~ 526 (1075)
T KOG2171|consen 514 FDRL-----MPLLKNFLQ 526 (1075)
T ss_pred HHHH-----HHHHHHHHh
Confidence 5555 455555443
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.21 E-value=3.1e-09 Score=104.30 Aligned_cols=281 Identities=19% Similarity=0.219 Sum_probs=194.4
Q ss_pred ChHHHHhhcCCCCCCccc---------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHh
Q psy664 11 AVPVFIQLLLSPHEDQVT---------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA 80 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~---------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 80 (379)
+.+..++++.+++...+. .....+.++- ++..+.+-| ++++.++..|..++++++.. ....
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l--~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-------~~~~ 113 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL--IINSLQKDLNSPNPYIRGLALRTLSNIRTP-------EMAE 113 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH--HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-------HHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH--HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-------chhh
Confidence 566777787777665555 1111121111 344555556 77888888999999998832 3456
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
.+++.+.+++.++++.||..|+.++..+....++..+ .. +++.+.++|.++++.++..|+.++..+ ..++....
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~- 187 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK- 187 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-
Confidence 7899999999999999999999999999866554322 22 689999999999999999999999999 22222211
Q ss_pred HhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 161 ILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
-.-...++.|.+++...++..+..+..++..++...+..... ..+++.+..++++.++.+..+++.++..+. ...
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~--~~~ 262 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS--PSP 262 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSH
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh--cch
Confidence 111234556666667888999999999999987766655422 457788888888889999999999999874 344
Q ss_pred HHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHH
Q psy664 241 DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQ 320 (379)
Q Consensus 241 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~ 320 (379)
... ..+++.|..++.++++.++..++..|..++...... +. ...-.+..+..+++..|+.
T Consensus 263 ~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-------------v~--~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 263 ELL-----QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA-------------VF--NQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-------------HG--THHHHHHHHHCSSSHHHHH
T ss_pred HHH-----HhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh-------------hh--hhhhhhheecCCCChhHHH
Confidence 422 235888999999999999999999998888765211 11 1111233344466666777
Q ss_pred HHHHHHHHhcC
Q psy664 321 KAFDIIEHYFG 331 (379)
Q Consensus 321 ~a~~il~~~~~ 331 (379)
++..++..+.+
T Consensus 323 ~~l~lL~~l~~ 333 (526)
T PF01602_consen 323 KALDLLYKLAN 333 (526)
T ss_dssp HHHHHHHHH--
T ss_pred HHHHHHhhccc
Confidence 77766666654
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.18 E-value=2.4e-09 Score=97.30 Aligned_cols=226 Identities=12% Similarity=0.156 Sum_probs=162.5
Q ss_pred hHHHHhcC--C-CChhHHHHHHHHHHHHhCCCCCCCChHhH------hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q psy664 42 LYPLIDKP--K-NRLSMVRNSVWVLSNLCRGKTPPPDFAKV------APALACLSRLLFHADPDVLADACWAISYLSDGP 112 (379)
Q Consensus 42 i~~Ll~lL--~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~ 112 (379)
...++++| . .+.++++.+.-.+..++..+......+.. ......+++++..+|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 55667777 3 78899999999999999987544333332 125667788999999999999999999998765
Q ss_pred hHHHHHHHhcCcHHHHHHhhcC----CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh------cC-CChhh
Q psy664 113 NEKIQAVIDAGVCRRLVELLMH----DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI------QS-PKESI 181 (379)
Q Consensus 113 ~~~~~~~~~~g~i~~L~~lL~~----~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL------~~-~~~~v 181 (379)
+....... .+.++.+++.+.+ ++.+++..++++++++.. .+.++..+.+.++++.+..++ .+ .+..+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 54433222 4567777777765 456677999999999985 568888899999999999999 22 23788
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc
Q psy664 182 RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT 260 (379)
Q Consensus 182 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 260 (379)
+.+++.+++-+ +-+++.+..+.+.++++.+.++++.. ..++.+-++.++.|++..........++.+|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlL-SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLL-SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHH-TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHH-hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 99999999998 46778888898999999999999875 67999999999999997666557788888887777766654
Q ss_pred c--CCHHHHHHH
Q psy664 261 L--LDAKIIQVA 270 (379)
Q Consensus 261 ~--~d~~v~~~a 270 (379)
. .|+++..-.
T Consensus 294 rk~~Dedl~edl 305 (312)
T PF03224_consen 294 RKWSDEDLTEDL 305 (312)
T ss_dssp S--SSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 3 688877653
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.13 E-value=8.3e-09 Score=95.59 Aligned_cols=267 Identities=16% Similarity=0.168 Sum_probs=184.4
Q ss_pred CChHHHHhhcCCCCCCccc-CchhHHHHHhC-------C----ChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCC
Q psy664 10 GAVPVFIQLLLSPHEDQVT-HPSVETMSLDN-------N----ILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPD 75 (379)
Q Consensus 10 g~i~~L~~lL~s~~~~v~~-~~~~r~~i~~~-------g----~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~ 75 (379)
....+++++|.+++.-++. ...+-..++.. . .++.+...+ ..+...+..++.+|..|.+.+ +.+.
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~ 179 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRF 179 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHH
Confidence 4566777788777665555 11111111111 1 222344444 235677778889999999987 5555
Q ss_pred hHhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhc
Q psy664 76 FAKVAPALACLSRLLFHA--DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 76 ~~~~~~~l~~L~~lL~~~--d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~ 152 (379)
.+...++++.|+.+|+.. +.+++.+++.+++-++...+ ........++++.++++++. ..+++.+-++.++.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 555667899999999753 56999999999999997764 55556667999999999987 588999999999999997
Q ss_pred CC------chhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHHHH-------hhc------------------C-C--
Q psy664 153 GD------DQQTQVILNCSALMCLLHLIQSP--KESIRKEACWAVSN-------ITA------------------G-N-- 196 (379)
Q Consensus 153 ~~------~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~n-------l~~------------------~-~-- 196 (379)
.+ ......+++.|+++.+-.+.... |+++....-..-.. ++. + +
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 43 22335667777777666655432 34433322222111 110 1 0
Q ss_pred --hHHHHHHHhc--CchHHHHHHHH-hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHH
Q psy664 197 --RQQIQAVIDA--NIFPSLIEILQ-KAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVAL 271 (379)
Q Consensus 197 --~~~~~~~~~~--~~i~~Li~ll~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 271 (379)
.++...+-+. .++..|+++|. +.|+.+..-||.-|+.++ ...|.....+-+.|+=..++.+|.++|++|+.+|+
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~v-r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYV-RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHH-HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence 1223334433 36788999995 457888999999999998 55677777777889999999999999999999999
Q ss_pred HHHHHHHH
Q psy664 272 NGLENILK 279 (379)
Q Consensus 272 ~~L~~l~~ 279 (379)
.++..++.
T Consensus 418 ~avQklm~ 425 (429)
T cd00256 418 LAVQKLMV 425 (429)
T ss_pred HHHHHHHH
Confidence 99998875
No 41
>KOG2160|consensus
Probab=99.08 E-value=2.8e-08 Score=87.96 Aligned_cols=186 Identities=16% Similarity=0.190 Sum_probs=153.8
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 129 (379)
+.+.+-+..+..-|..++..-+. ...+...|+++.++.++++.+..+|..|+|+++.++.+++.....+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34556666777778888776533 33334445566666699999999999999999999999999999999999999999
Q ss_pred HhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC--CChhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy664 130 ELLMHD-QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS--PKESIRKEACWAVSNITAGNRQQIQAVIDA 206 (379)
Q Consensus 130 ~lL~~~-~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 206 (379)
..+.++ +..++..|+.+++.+..........+...++...|..+|++ .+...+..|+..++.+..........+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999976 45667999999999999988888888888899999999988 558889999999999988777666656666
Q ss_pred CchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 207 NIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 207 ~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
++...+..+....+.++...+..++..++.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777778888888899999999988888764
No 42
>KOG2759|consensus
Probab=99.08 E-value=1.1e-07 Score=85.45 Aligned_cols=279 Identities=13% Similarity=0.133 Sum_probs=196.5
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
...+.+.+| ..+.-+.....|+++.++...+.........-....+-..+++ .+++-..-+.++|..+...+ +.+..
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~ 193 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYA 193 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhhe
Confidence 356677778 6667777779999999988764333221222223334444454 56777788888998888776 57777
Q ss_pred HHhcCcHHHHHHhhcC--CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcC
Q psy664 119 VIDAGVCRRLVELLMH--DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP-KESIRKEACWAVSNITAG 195 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~--~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~ 195 (379)
++...++..++..+.+ .+-+++...+.|+.-++.. +...+.+...+.++.|..++++. ..+|.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888888843 3778889999999988864 45556677779999999999765 478889999999998876
Q ss_pred Ch------HHHHHHHhcCchHHHHHHHHh--CcHHHHHHHHH----------HHHHH------hcCC-------------
Q psy664 196 NR------QQIQAVIDANIFPSLIEILQK--AEFKTRKEAAW----------AITNA------TSGG------------- 238 (379)
Q Consensus 196 ~~------~~~~~~~~~~~i~~Li~ll~~--~~~~v~~~a~~----------~l~nl------~~~~------------- 238 (379)
.+ +.+..++..++.+.+-.+... +|+++....-. -|+.. +..|
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 63 444566676766665554443 24444322111 11111 0000
Q ss_pred CHHHHHHHHHc--CChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC
Q psy664 239 TPDQIRYLIQQ--GCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN 315 (379)
Q Consensus 239 ~~~~~~~l~~~--~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~ 315 (379)
-.+....+.+. .++..|+.+|+. .||.+.-.|+.-++...++.+.. ...+++.||-+.+.+|++|+|
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g----------k~vv~k~ggKe~vM~Llnh~d 422 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG----------KAVVEKYGGKERVMNLLNHED 422 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH----------hHHHHHhchHHHHHHHhcCCC
Confidence 12455555543 578889999987 56888888999999999887655 478999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q psy664 316 IEIYQKAFDIIEHYFG 331 (379)
Q Consensus 316 ~~v~~~a~~il~~~~~ 331 (379)
++|+..|...++++..
T Consensus 423 ~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 423 PEVRYHALLAVQKLMV 438 (442)
T ss_pred chHHHHHHHHHHHHHh
Confidence 9999999988887653
No 43
>KOG1293|consensus
Probab=99.05 E-value=6.2e-09 Score=98.00 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=118.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHH
Q psy664 134 HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLI 213 (379)
Q Consensus 134 ~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li 213 (379)
..+...+.+|+-++.+++..-.....-.-...+...+++++..++..|+..+.++|.|+.-........++..|+++.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 45777888888888887764333333334456788899999999999999999999999877777788999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHH-HHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 214 EILQKAEFKTRKEAAWAITNATSGGTPDQIRY-LIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 214 ~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~-l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
.++.+.++.+++.+.|+|.++. .++.+..+. +...=....+..+..++|..|++.++..|.|+.....
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~-f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLM-FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHH-hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 9999999999999999999987 555554444 3333334556667788999999999999999988743
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.05 E-value=6e-09 Score=102.24 Aligned_cols=281 Identities=16% Similarity=0.170 Sum_probs=187.9
Q ss_pred hHHHHhhcCCCCCCccc-----CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHH
Q psy664 12 VPVFIQLLLSPHEDQVT-----HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALAC 85 (379)
Q Consensus 12 i~~L~~lL~s~~~~v~~-----~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 85 (379)
+..+.+=|.++++.++. -...+..-+-.-+++.+.+++ ++++.+++.|+-++..+.+.. +...... .++.
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~---p~~~~~~-~~~~ 156 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD---PDLVEDE-LIPK 156 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---HCCHHGG-HHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC---HHHHHHH-HHHH
Confidence 45566666676655544 011111111122466677777 889999999999999999874 2222222 7999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcC
Q psy664 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCS 165 (379)
Q Consensus 86 L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~ 165 (379)
+.+++.++|+.++..|+.++..+ ..++.... -.-...++.|.+++...++..+..+++++..++...+..... ..
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~ 231 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NR 231 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HH
T ss_pred HhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HH
Confidence 99999999999999999999999 33222211 122345666777778899999999999999988765544421 45
Q ss_pred cHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy664 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRY 245 (379)
Q Consensus 166 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 245 (379)
+++.+..++++.++.|..+|+.++..+.. .+. .-..+++.+..++.+.++.++..++.+|..++.. .+....
T Consensus 232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~-~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~-~~~~v~- 303 (526)
T PF01602_consen 232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSP-SPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS-NPPAVF- 303 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSS-SHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH-CHHHHG-
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhc-chH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc-cchhhh-
Confidence 67888899988889999999999998854 333 2235788999999999999999999999998743 322221
Q ss_pred HHHcCChHHHHHhhc-cCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh-cCCCHHHHHHHH
Q psy664 246 LIQQGCIEPFCELLT-LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ-SHENIEIYQKAF 323 (379)
Q Consensus 246 l~~~~~i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~-~~~~~~v~~~a~ 323 (379)
........+. ++|..++..++..|..++....-. .. ++.|.... +..+++++..+.
T Consensus 304 -----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~-----------~I------l~eL~~~l~~~~d~~~~~~~i 361 (526)
T PF01602_consen 304 -----NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVK-----------EI------LDELLKYLSELSDPDFRRELI 361 (526)
T ss_dssp -----THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHH-----------HH------HHHHHHHHHHC--HHHHHHHH
T ss_pred -----hhhhhhheecCCCChhHHHHHHHHHhhcccccchh-----------hH------HHHHHHHHHhccchhhhhhHH
Confidence 1222333444 788999999999999998744322 11 34444444 444666666666
Q ss_pred HHHHHhcC
Q psy664 324 DIIEHYFG 331 (379)
Q Consensus 324 ~il~~~~~ 331 (379)
..|..+..
T Consensus 362 ~~I~~la~ 369 (526)
T PF01602_consen 362 KAIGDLAE 369 (526)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554443
No 45
>KOG2023|consensus
Probab=99.03 E-value=1.3e-08 Score=95.76 Aligned_cols=301 Identities=15% Similarity=0.136 Sum_probs=195.9
Q ss_pred ChHHHHhhcCCCCCCccc------------CchhHHHHHh----CCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCC
Q psy664 11 AVPVFIQLLLSPHEDQVT------------HPSVETMSLD----NNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPP 73 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~----~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~ 73 (379)
++|.|+.+|.+++...++ +++.-+.-.. .-.+|.++++. ++++.++..|..++....-.. ..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~q 207 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQ 207 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cH
Confidence 679999999999988777 2222111111 12467777777 888999999999988776554 23
Q ss_pred CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC
Q psy664 74 PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG 153 (379)
Q Consensus 74 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~ 153 (379)
.-.......+..+..+-.+++++||...|.+|..|.+..++....-+ .++++.++...++.++++..+|+.....++..
T Consensus 208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 33334557788888888888999999999999999976554433222 36888888888899999999999999888865
Q ss_pred CchhhHHHhh--cCcHHHHHHhhcCCC-----------------------------------------------------
Q psy664 154 DDQQTQVILN--CSALMCLLHLIQSPK----------------------------------------------------- 178 (379)
Q Consensus 154 ~~~~~~~~~~--~~~l~~L~~lL~~~~----------------------------------------------------- 178 (379)
. .....+.. ..++|.|++-|..++
T Consensus 287 p-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 287 P-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred c-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 4 33332221 245666665332111
Q ss_pred ---hhhHHHHHHHHHHhhcCChHHHHHHHhcCc----hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Q psy664 179 ---ESIRKEACWAVSNITAGNRQQIQAVIDANI----FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGC 251 (379)
Q Consensus 179 ---~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~----i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~ 251 (379)
..+|+..+.++.-++. +....+ +|.|-..|.+.+-.+|+.++-+++.+..+.-.-....+- .+
T Consensus 366 ~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eL 435 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--EL 435 (885)
T ss_pred cccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HH
Confidence 1234333333332221 222233 455555555667788888899999886432222222221 35
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
++.|+.+|+++-+-||...||+|++.......... ..-+... ++.|.+-+-+.|..|++.|+....++-+
T Consensus 436 ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~----~~~f~pv------L~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 436 IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR----DEYFKPV------LEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh----HhhhHHH------HHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999988765443311 1112222 3444455567789999999999988865
Q ss_pred CCc
Q psy664 332 SEE 334 (379)
Q Consensus 332 ~~~ 334 (379)
+-+
T Consensus 506 ~A~ 508 (885)
T KOG2023|consen 506 EAG 508 (885)
T ss_pred hcc
Confidence 443
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.02 E-value=1.8e-08 Score=91.63 Aligned_cols=232 Identities=15% Similarity=0.181 Sum_probs=166.0
Q ss_pred hHHHHHHhhc--CCChHHHHHHHHHHHHhcCCChHHHHHHHhc------CcHHHHHHhhcCCChHHHHHHHHHHHHhhcC
Q psy664 82 ALACLSRLLF--HADPDVLADACWAISYLSDGPNEKIQAVIDA------GVCRRLVELLMHDQHKVVSAALRAVGNIVTG 153 (379)
Q Consensus 82 ~l~~L~~lL~--~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~------g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~ 153 (379)
....++.+|+ +.++++....+..+..+....+...+.+... .....+++++.++|..++..|+.+++.+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 3444445554 4689999999999999887777777666652 2578888999999999999999999999876
Q ss_pred CchhhHHHhhcCcHHHHHHhhcC----CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHH------H-hCcHH
Q psy664 154 DDQQTQVILNCSALMCLLHLIQS----PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEIL------Q-KAEFK 222 (379)
Q Consensus 154 ~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll------~-~~~~~ 222 (379)
.+....... .+.++.+.+.+.+ ++..++..|+.++.++. ..++....+.+.+.++.+.+++ . ..+..
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 555444321 3556666666654 44677899999999995 6677888888999999999999 2 23678
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHh
Q psy664 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEEC 301 (379)
Q Consensus 223 v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~ 301 (379)
++.+++.++--+ .-+++....+.+.++++.|++++.. .-.++.+.++.+|.|++....+ .+...+..+
T Consensus 214 l~Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~---------~~~~~mv~~ 282 (312)
T PF03224_consen 214 LQYQALLCLWLL--SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK---------SNIELMVLC 282 (312)
T ss_dssp HHHHHHHHHHHH--TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST---------THHHHHHHH
T ss_pred HHHHHHHHHHHH--hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH---------HHHHHHHHc
Confidence 899999999987 4477888889999999999999976 5669999999999999986542 256778899
Q ss_pred ccHHHHHHhhcC--CCHHHHHHHHHHH
Q psy664 302 YGLDKIEFLQSH--ENIEIYQKAFDII 326 (379)
Q Consensus 302 g~l~~l~~l~~~--~~~~v~~~a~~il 326 (379)
|++..+..|+.. .|+++.+--..+-
T Consensus 283 ~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 283 GLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp -HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999998864 4777776554443
No 47
>KOG2759|consensus
Probab=98.92 E-value=1.9e-07 Score=84.01 Aligned_cols=227 Identities=15% Similarity=0.179 Sum_probs=167.6
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc--CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHH
Q psy664 51 NRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF--HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRL 128 (379)
Q Consensus 51 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 128 (379)
.+......++.||.-+.+.+ +.+-.....+.+..++..+. ..+-+++.+.+.+++-|+.++... +.+...+.++.|
T Consensus 169 ~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L 246 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDL 246 (442)
T ss_pred CCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHH
Confidence 56667778889999999987 44444455666677777663 346899999999999999887544 556667899999
Q ss_pred HHhhcCC-ChHHHHHHHHHHHHhhcCCc------hhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHHHHhhc-----
Q psy664 129 VELLMHD-QHKVVSAALRAVGNIVTGDD------QQTQVILNCSALMCLLHLIQSP--KESIRKEACWAVSNITA----- 194 (379)
Q Consensus 129 ~~lL~~~-~~~i~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~----- 194 (379)
..++++. .+++.+-++.++.|+....+ .....++..++++.+-.+.... ++++....-..-..+-.
T Consensus 247 ~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~L 326 (442)
T KOG2759|consen 247 SDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDL 326 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 9999874 88999999999999997653 3334566667666666555432 34444443333322211
Q ss_pred -C---------------Ch---------HHHHHHHhc--CchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy664 195 -G---------------NR---------QQIQAVIDA--NIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPDQIRYL 246 (379)
Q Consensus 195 -~---------------~~---------~~~~~~~~~--~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l 246 (379)
. +| +++..+-+. .++..|+++|+.+ ||.+..-||.-|+..+ .+.|+....+
T Consensus 327 sSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V-r~yP~gk~vv 405 (442)
T KOG2759|consen 327 SSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV-RHYPEGKAVV 405 (442)
T ss_pred ccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH-HhCchHhHHH
Confidence 0 11 122233332 4789999999876 5888889999999998 7888988888
Q ss_pred HHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 247 IQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 247 ~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
.+.|+=+.++++|+++|++|+.+|+.++..++..
T Consensus 406 ~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 406 EKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999988763
No 48
>KOG3678|consensus
Probab=98.88 E-value=5.8e-07 Score=81.85 Aligned_cols=275 Identities=13% Similarity=0.094 Sum_probs=195.2
Q ss_pred hhHHHHHhCCChHHHHhcC-CCCh--hHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHH
Q psy664 31 SVETMSLDNNILYPLIDKP-KNRL--SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF-HADPDVLADACWAIS 106 (379)
Q Consensus 31 ~~r~~i~~~g~i~~Ll~lL-~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~ 106 (379)
...|.+...|+++.|++++ .++. .++-.+...|-.+.... ..+.+...+ +..++.+-+ .+.++.....+..|.
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae--N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE--NRDRVARIG-LGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh--hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence 3457788899999999999 5554 44668888888876653 344444433 333333333 334788889999999
Q ss_pred HhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHhhcCcHHHHHHhhcCCChhhHHHH
Q psy664 107 YLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG-DDQQTQVILNCSALMCLLHLIQSPKESIRKEA 185 (379)
Q Consensus 107 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 185 (379)
++-.++++..+.++..|++..++--.+..++.+.+.+.-+|+|++.. .......+++..+-.+|.-+-.+.+.-.|..|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999854 34455668888888899888888888999999
Q ss_pred HHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHH
Q psy664 186 CWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAK 265 (379)
Q Consensus 186 ~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~ 265 (379)
|.++.-++ .+.+.-..+..+|-+..+--++..-||-.-..-+ ........++ -++.|+.+|++...+
T Consensus 328 ClAV~vla-t~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~---hd~aQG~~~d---------~LqRLvPlLdS~R~E 394 (832)
T KOG3678|consen 328 CLAVAVLA-TNKEVEREVRKSGTLALVEPLVASLDPGRFARDA---HDYAQGRGPD---------DLQRLVPLLDSNRLE 394 (832)
T ss_pred HHHHhhhh-hhhhhhHHHhhccchhhhhhhhhccCcchhhhhh---hhhhccCChH---------HHHHhhhhhhcchhh
Confidence 99999884 5555556677777766666666665554322111 1111122333 266777888764433
Q ss_pred HHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy664 266 IIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 266 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~ 329 (379)
. .+..+++-.++...+. ...-...|.+.|.++.|.++..++++.-.+.|...|.-+
T Consensus 395 A--q~i~AF~l~~EAaIKs------~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 395 A--QCIGAFYLCAEAAIKS------LQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred h--hhhHHHHHHHHHHHHH------hccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 3 3555666556555443 222356889999999999999999987777777666543
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=98.88 E-value=5.9e-07 Score=89.59 Aligned_cols=182 Identities=16% Similarity=0.110 Sum_probs=125.9
Q ss_pred hHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q psy664 42 LYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 42 i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~ 120 (379)
++++.+.+ +.++.+++.|+.++..+.+.. + ..+...+.++.|.++|.+.|+.+...|+.+|..+....+.... .
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~-p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l 216 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDD-M--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--S 216 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-c--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--H
Confidence 34455556 788999999999999997764 2 3344567889999999999999999999999999866544332 2
Q ss_pred hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChHH
Q psy664 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAG-NRQQ 199 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~ 199 (379)
..+.+..++..+..-++..+...+.+|....-.++... ..++..+...|++.++.|.-+|+.++.++... +++.
T Consensus 217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~ 291 (746)
T PTZ00429 217 SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQEL 291 (746)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHH
Confidence 34567778888877778888888888865322111111 24677788889999999999999999998653 2333
Q ss_pred HHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 200 ~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
+..+.. .+-+.++.++ +++++++.-++..|.-++
T Consensus 292 ~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 292 IERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 332221 2335555553 456677777776665554
No 50
>PTZ00429 beta-adaptin; Provisional
Probab=98.86 E-value=1.5e-06 Score=86.75 Aligned_cols=224 Identities=13% Similarity=0.066 Sum_probs=147.4
Q ss_pred hHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q psy664 42 LYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 42 i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~ 120 (379)
+..+.+=+ ++++.++..|..+++++... .....+++.+.+.+.+.++-||..|+.++.++-..+++ .+.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~~-------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~ 176 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRVS-------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFY 176 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCcH-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---ccc
Confidence 34444444 66666776777766654332 23455677777888888888898888888888765542 234
Q ss_pred hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHH
Q psy664 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQI 200 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 200 (379)
+.++++.|.++|.+.++.++..|+.+|..+...++... -...+.+..+...+..-++.-+.....++....-.+.+..
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~ 254 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA 254 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH
Confidence 56778888888888888888888888888875443221 2233445566666666666666666666654321111111
Q ss_pred HHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 201 QAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 201 ~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
..++..+...+++.++-|.-+|+.++.++....+++....+.. .+..+++.|+ +++++++..++..|..++..
T Consensus 255 -----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 255 -----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHH
Confidence 2467777888888899999999999999864333443333221 2335666664 56789999999888888776
Q ss_pred cHHh
Q psy664 281 GEEE 284 (379)
Q Consensus 281 ~~~~ 284 (379)
.+..
T Consensus 328 ~P~l 331 (746)
T PTZ00429 328 FPNL 331 (746)
T ss_pred CHHH
Confidence 6554
No 51
>KOG2023|consensus
Probab=98.84 E-value=6.5e-08 Score=91.25 Aligned_cols=262 Identities=16% Similarity=0.106 Sum_probs=172.7
Q ss_pred ChHHHHhhcCC---CCCCcccCchhHHHHHhCCChHHHHhcC--------CCChhHHHHHHHHHHHHhCCCCCCCChHhH
Q psy664 11 AVPVFIQLLLS---PHEDQVTHPSVETMSLDNNILYPLIDKP--------KNRLSMVRNSVWVLSNLCRGKTPPPDFAKV 79 (379)
Q Consensus 11 ~i~~L~~lL~s---~~~~v~~~~~~r~~i~~~g~i~~Ll~lL--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 79 (379)
++..+..+|+. ++..++. ..+..+.+....|.+...| +.+...+..|.-.|.|=.+...........
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~--~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~ 88 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRN--NVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVL 88 (885)
T ss_pred HHHHHHHHHHhccCCChHHHH--HHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHH
Confidence 44556666643 3322222 2233344444455544444 455666667777777766665444444333
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
.-+-..+++.+...++-++...-..+..|++... .+. -..++|.|.++|.+++....+.|+.+|..|+.++.+..+
T Consensus 89 ~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~--~~~--wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 89 DYIKSECLHGLGDASPLIRATVGIVITTIASTGG--LQH--WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred HHHHHHHHhhccCchHHHHhhhhheeeeeecccc--ccc--chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 4444556666666667666555545555553321 110 135799999999999999999999999999976654443
Q ss_pred HHhhc----CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 160 VILNC----SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 160 ~~~~~----~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
.-... -++|.+.++.+|+++++|..|..++..+.-........-++ .++..+..+-.+.+++||++.|.++..++
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Ll 243 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLL 243 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 21111 36788999999999999999999999865443333222222 57778888888889999999999999998
Q ss_pred cCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHc
Q psy664 236 SGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 236 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 281 (379)
..........+ .+++++++...++.|.+|-..|++....+++..
T Consensus 244 evr~dkl~phl--~~IveyML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 244 EVRPDKLVPHL--DNIVEYMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred HhcHHhcccch--HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 54433222222 367888888888888899999999988888754
No 52
>KOG0946|consensus
Probab=98.81 E-value=4.2e-06 Score=80.77 Aligned_cols=299 Identities=14% Similarity=0.178 Sum_probs=216.2
Q ss_pred CchhHHHHHhCCChHHHHhcC---CCChhHHHHHHHHHHHHhCCCC------CCC-----------ChHhHhhhHHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP---KNRLSMVRNSVWVLSNLCRGKT------PPP-----------DFAKVAPALACLSR 88 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL---~~~~~~~~~a~~~L~~l~~~~~------~~~-----------~~~~~~~~l~~L~~ 88 (379)
+..+|..+...| +++|++.| -+|++....+.-++.++.+.++ ... .++...+.+..++.
T Consensus 51 srkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~ 129 (970)
T KOG0946|consen 51 SRKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQ 129 (970)
T ss_pred HHHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHH
Confidence 677777777665 69999999 5688999999999999988763 111 12233477888999
Q ss_pred hhcCCChHHHHHHHHHHHHhcCC-ChHHHHHHHh-cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCc
Q psy664 89 LLFHADPDVLADACWAISYLSDG-PNEKIQAVID-AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSA 166 (379)
Q Consensus 89 lL~~~d~~v~~~a~~aL~~l~~~-~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~ 166 (379)
.+...|-.||..++..+.++... +.+..+.++. .-+|..++.+|.+..+.++-.++..|..++.+++...+.+.=.++
T Consensus 130 ~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENa 209 (970)
T KOG0946|consen 130 SLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENA 209 (970)
T ss_pred HHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHH
Confidence 99999999999999999877754 4455555555 378999999999999999999999999999998888887777788
Q ss_pred HHHHHHhhcCC---C-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh---Cc--------HHH--HHHHHH
Q psy664 167 LMCLLHLIQSP---K-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK---AE--------FKT--RKEAAW 229 (379)
Q Consensus 167 l~~L~~lL~~~---~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~---~~--------~~v--~~~a~~ 229 (379)
...|..++... + .-|...+...+.|+...+....+.+.+.+.+|.|.++|.. +| .++ ...++.
T Consensus 210 FerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lq 289 (970)
T KOG0946|consen 210 FERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQ 289 (970)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHH
Confidence 99999999654 2 4578889999999999888888899999999999988754 22 122 345666
Q ss_pred HHHHHhcCCCH----HHH-HHHHHcCChHHHHHhhccCC--HHHHHHHHHHHHHHHHHcHHhhhhc-----CCcc-hHHH
Q psy664 230 AITNATSGGTP----DQI-RYLIQQGCIEPFCELLTLLD--AKIIQVALNGLENILKLGEEEAKQT-----GSVN-PYVV 296 (379)
Q Consensus 230 ~l~nl~~~~~~----~~~-~~l~~~~~i~~L~~lL~~~d--~~v~~~al~~L~~l~~~~~~~~~~~-----~~~~-~~~~ 296 (379)
++..+++-++. .+. ..+.+++++..|+.++.+++ .+|+..+.-++.++.......+..- .+.+ |-..
T Consensus 290 ivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~s 369 (970)
T KOG0946|consen 290 IVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPS 369 (970)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccc
Confidence 77777654442 233 35678899999999988763 4889999899999887665443210 1111 1111
Q ss_pred HHHHhccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCc
Q psy664 297 LIEECYGLDKIEFLQS-HENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 297 ~i~~~g~l~~l~~l~~-~~~~~v~~~a~~il~~~~~~~~ 334 (379)
+ +-.+..+.+ ......+-.+...+.-|+.+.+
T Consensus 370 i------vvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 370 I------VVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred h------hHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 1 111222333 3345666677777777776543
No 53
>KOG1241|consensus
Probab=98.80 E-value=4.7e-07 Score=86.84 Aligned_cols=271 Identities=15% Similarity=0.145 Sum_probs=172.6
Q ss_pred CChHHHHhhcCCCCCCccc-----------CchhHHHHHhCCChHHHHhcC-----CCChhHHHHHHHHHHHHhCCCCCC
Q psy664 10 GAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNNILYPLIDKP-----KNRLSMVRNSVWVLSNLCRGKTPP 73 (379)
Q Consensus 10 g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL-----~~~~~~~~~a~~~L~~l~~~~~~~ 73 (379)
+++|.|+++|...+++--. +-..-.......+++..+.++ +++..-+..++.++..+-.+.++.
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh
Confidence 6789999999775543333 111222334445555555555 677888889999999999988777
Q ss_pred CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHH-HHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 74 PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQ-AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 74 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
.......+++|.++.++.++..-++..+.|+|+.+++..++.+. .....+.++.++.-|. +.+.+..+++|++-+++.
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 77777889999999999987888899999999999988664332 1222244444444443 567899999999999984
Q ss_pred CCch------hhHHHhhcCcHHHHHHhh---cC---CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHH----HH
Q psy664 153 GDDQ------QTQVILNCSALMCLLHLI---QS---PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIE----IL 216 (379)
Q Consensus 153 ~~~~------~~~~~~~~~~l~~L~~lL---~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~----ll 216 (379)
.-.+ +.+ ....-+.+.+-+++ +. .....|..|..+|+.+...+++..-.++. ++...++. .+
T Consensus 478 a~~eA~~s~~qt~-~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i 555 (859)
T KOG1241|consen 478 AAYEAAVSNGQTD-PATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTI 555 (859)
T ss_pred HHHHhccCCCCCC-ccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2111 111 11111222333333 33 23789999999999998877766654433 22222222 22
Q ss_pred H-----hCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC-CHHHHHHHHHHHHHHHHHcHHhh
Q psy664 217 Q-----KAE----FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL-DAKIIQVALNGLENILKLGEEEA 285 (379)
Q Consensus 217 ~-----~~~----~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~ 285 (379)
+ ..| .+++..-|.+|..+...-.+ .+.... ..++..|+.++.++ ..-+.+.++.+++.++..-...+
T Consensus 556 ~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~-d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F 632 (859)
T KOG1241|consen 556 SSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVS-DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGF 632 (859)
T ss_pred HHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHH-HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhH
Confidence 2 222 35677777777777642222 222222 23577788888873 44677889999998888766553
No 54
>KOG0946|consensus
Probab=98.76 E-value=3.8e-06 Score=81.10 Aligned_cols=276 Identities=17% Similarity=0.201 Sum_probs=196.2
Q ss_pred hHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcCCCh----
Q psy664 42 LYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA--DPDVLADACWAISYLSDGPN---- 113 (379)
Q Consensus 42 i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~aL~~l~~~~~---- 113 (379)
|+.|+.-. +.-.+-+|.|+..|..+++.- +..+...+++.+++.|+.+ |+++...++.++.++..+.+
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srkY----R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKY----REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 45666555 455677899999999998752 3445567788888888754 79999999999999986652
Q ss_pred --HH----------HHHHH-hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hhhHHHh-hcCcHHHHHHhhcCCC
Q psy664 114 --EK----------IQAVI-DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDD-QQTQVIL-NCSALMCLLHLIQSPK 178 (379)
Q Consensus 114 --~~----------~~~~~-~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~-~~~~~~~-~~~~l~~L~~lL~~~~ 178 (379)
+. .+.++ ..+.|..++..+.+.+-.++++++..+.++....+ +..+.++ ..-++..++.+|++..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 11 12233 34889999999999999999999999999876543 3334333 4578999999999999
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC---c-HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA---E-FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEP 254 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~---~-~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~ 254 (379)
.-||-+|+..|.-++.+++...+.+.=.+++..|+.++... | --|...++..+.|++. .+...-.++.+.+.++.
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK-~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK-NNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh-hCcchhhHHhccccHHH
Confidence 99999999999999887766444444448999999999763 2 2578889999999984 44455568889999999
Q ss_pred HHHhhcc---CC--------HHHH--HHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC--HHHH
Q psy664 255 FCELLTL---LD--------AKII--QVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN--IEIY 319 (379)
Q Consensus 255 L~~lL~~---~d--------~~v~--~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~--~~v~ 319 (379)
|..+|.. .| .++. ..++.++..+..-+..... ...-...+.++++++.|..++.|+. .+|.
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~----~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSI----THQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 9988753 23 1222 2244444444433222111 1112257889999999999998883 4555
Q ss_pred HHHHHHH
Q psy664 320 QKAFDII 326 (379)
Q Consensus 320 ~~a~~il 326 (379)
..+....
T Consensus 335 tesiitv 341 (970)
T KOG0946|consen 335 TESIITV 341 (970)
T ss_pred HHHHHHH
Confidence 5444333
No 55
>KOG1241|consensus
Probab=98.71 E-value=4.9e-06 Score=80.09 Aligned_cols=272 Identities=15% Similarity=0.169 Sum_probs=169.4
Q ss_pred CCChHHHHhcC-C-------CChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcC
Q psy664 39 NNILYPLIDKP-K-------NRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSD 110 (379)
Q Consensus 39 ~g~i~~Ll~lL-~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~ 110 (379)
.+++|.|+++| . ++.+.-..|.-||.-++.-. ...++..++|.+-+-++++|..-++.+..+++.+-.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~----~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV----GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh----cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 36778888888 1 23445555555555554332 112345778888888889999999999999999999
Q ss_pred CChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh-HHHhhcCcHHHHHHhhcCCChhhHHHHHHHH
Q psy664 111 GPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT-QVILNCSALMCLLHLIQSPKESIRKEACWAV 189 (379)
Q Consensus 111 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 189 (379)
+++.....-+..+++|.++.++.++...++..+.|++|.++...++.+ ........++.++.-|++ .+.+-..+||++
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf 472 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAF 472 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHH
Confidence 887777666777899999999998888889999999999997655333 222233455555555543 488999999999
Q ss_pred HHhhcCChHHHH---------HHHhcCchHHHHHHHHh---CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHH
Q psy664 190 SNITAGNRQQIQ---------AVIDANIFPSLIEILQK---AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCE 257 (379)
Q Consensus 190 ~nl~~~~~~~~~---------~~~~~~~i~~Li~ll~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ 257 (379)
.+++.+..+... .+.+ .++..|++..+. .+...|..|..+|..++...+.+....+.+ .......
T Consensus 473 ~~Laea~~eA~~s~~qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~--~~l~il~ 549 (859)
T KOG1241|consen 473 ISLAEAAYEAAVSNGQTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK--LTLVILE 549 (859)
T ss_pred HHHHHHHHHhccCCCCCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH--HHHHHHH
Confidence 999742221111 1111 233344444333 357899999999999985544443332221 1222111
Q ss_pred ---------hhccCCH----HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcC-CCHHHHHHHH
Q psy664 258 ---------LLTLLDA----KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH-ENIEIYQKAF 323 (379)
Q Consensus 258 ---------lL~~~d~----~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~-~~~~v~~~a~ 323 (379)
.++..|. +++...+..|..+....... ...+.+.+ +..+.++.++ .+.-+.+.|+
T Consensus 550 kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~------~~~~~d~i-----M~lflri~~s~~s~~v~e~a~ 618 (859)
T KOG1241|consen 550 KLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD------IREVSDQI-----MGLFLRIFESKRSAVVHEEAF 618 (859)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc------chhHHHHH-----HHHHHHHHcCCccccchHHHH
Confidence 3333332 56666666777776654432 44455555 4555555555 3334555555
Q ss_pred HHHHHh
Q psy664 324 DIIEHY 329 (379)
Q Consensus 324 ~il~~~ 329 (379)
-.+..+
T Consensus 619 laV~tl 624 (859)
T KOG1241|consen 619 LAVSTL 624 (859)
T ss_pred HHHHHH
Confidence 444433
No 56
>KOG1517|consensus
Probab=98.66 E-value=3.3e-07 Score=90.54 Aligned_cols=216 Identities=14% Similarity=0.145 Sum_probs=164.5
Q ss_pred CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChH-hHhhhHHHHHHhhcC-C--ChHHHHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFA-KVAPALACLSRLLFH-A--DPDVLADACW 103 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~lL~~-~--d~~v~~~a~~ 103 (379)
.+-.-+..+.-|++|..+++| ++..+++...+.+-+.+..-+ +..+.. +..++-..+++.|.. + +++-+..|+.
T Consensus 501 GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAF 579 (1387)
T KOG1517|consen 501 GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAF 579 (1387)
T ss_pred chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHH
Confidence 666778889999999999999 777888877666666665555 333333 334556667777765 3 3588999999
Q ss_pred HHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhH
Q psy664 104 AISYLSDGPNEKIQAVIDAGVCRRLVELLMHD-QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIR 182 (379)
Q Consensus 104 aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 182 (379)
+|+.++.+-.-..+.+.+.+.+...+..|+++ .+-++..++-+||.|-.+.++.+-.-...++...|+.+|.++-++||
T Consensus 580 VLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVR 659 (1387)
T KOG1517|consen 580 VLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVR 659 (1387)
T ss_pred HHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHH
Confidence 99999998877888899999999999999985 67778889999999998776666555667888999999999999999
Q ss_pred HHHHHHHHHhhcC----ChHHHHHH------------HhcCch---HHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHH
Q psy664 183 KEACWAVSNITAG----NRQQIQAV------------IDANIF---PSLIEILQKAEFKTRKEAAWAITNATSGGTPDQI 243 (379)
Q Consensus 183 ~~a~~~l~nl~~~----~~~~~~~~------------~~~~~i---~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~ 243 (379)
.+|+++|+.+..+ .+++...+ ++..+. ..+..+++.+.+-++++.+-+++.+. .+...++
T Consensus 660 aAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~-~g~~~~~ 738 (1387)
T KOG1517|consen 660 AAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV-VGYVSHL 738 (1387)
T ss_pred HHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH-HhhHHHh
Confidence 9999999998764 33333222 222222 25667788899999999999999987 4544444
Q ss_pred HHH
Q psy664 244 RYL 246 (379)
Q Consensus 244 ~~l 246 (379)
...
T Consensus 739 ~~v 741 (1387)
T KOG1517|consen 739 KVV 741 (1387)
T ss_pred HHH
Confidence 433
No 57
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=8e-08 Score=88.58 Aligned_cols=266 Identities=15% Similarity=0.167 Sum_probs=182.6
Q ss_pred hhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCC
Q psy664 6 VIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTP 72 (379)
Q Consensus 6 ~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~ 72 (379)
+.++.+++.|+++|+.++..+.. -...+..+++.|++..|++++ +.|..++.+..|.+..+..+...
T Consensus 427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~ 506 (743)
T COG5369 427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQK 506 (743)
T ss_pred ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcc
Confidence 56778899999999986654433 566789999999999999999 88899999999999999998766
Q ss_pred CCChHhH-hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChH---HHHHHHhc----CcHHHHHHhhcCCChHHHHHHH
Q psy664 73 PPDFAKV-APALACLSRLLFHADPDVLADACWAISYLSDGPNE---KIQAVIDA----GVCRRLVELLMHDQHKVVSAAL 144 (379)
Q Consensus 73 ~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~---~~~~~~~~----g~i~~L~~lL~~~~~~i~~~al 144 (379)
..++... +-.+..++.+.++++..++++++..|.|.+.+... ..+.+++. -..+.+++.++..++-...+.+
T Consensus 507 ~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~ 586 (743)
T COG5369 507 NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGC 586 (743)
T ss_pred hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhH
Confidence 6555544 45688899999999999999999999999975433 22222222 2466777888888888888889
Q ss_pred HHHHHhhcCCchhhHHHhhc-CcHHHHHHhhcC-----------CChhhHHHHHHHHHHhhcCChHHHHHHHhcCch--H
Q psy664 145 RAVGNIVTGDDQQTQVILNC-SALMCLLHLIQS-----------PKESIRKEACWAVSNITAGNRQQIQAVIDANIF--P 210 (379)
Q Consensus 145 ~~L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~-----------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i--~ 210 (379)
.+|-+++..++...+.++.. .++..+...|.. ....+-..-.....++.......-. +.. |
T Consensus 587 yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r-----~~~~~p 661 (743)
T COG5369 587 YILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKR-----LVLTTP 661 (743)
T ss_pred HHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccccccccc-----ceecCC
Confidence 99999998887777666543 455555544421 0112222222222223221111111 111 1
Q ss_pred HHHHHHHh----CcHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 211 SLIEILQK----AEFKTRKEAAWAITNATS--------GGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 211 ~Li~ll~~----~~~~v~~~a~~~l~nl~~--------~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
.+= .+.. .+.+.--+..|.+.|+.- ..+.+.++.+.+.|+-+.+..+-.++.+.+++.+=.+|.++
T Consensus 662 ~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 662 HLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred Ccc-ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 111 1111 235677778888888541 12347888899999999998888888889999998888876
No 58
>KOG2973|consensus
Probab=98.56 E-value=0.0001 Score=64.21 Aligned_cols=273 Identities=14% Similarity=0.091 Sum_probs=175.3
Q ss_pred HHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhc
Q psy664 44 PLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDA 122 (379)
Q Consensus 44 ~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 122 (379)
.++.++ +.++.++..|+..+..+.... ...-.......++.+.+++...++ ...|..++.|++... ..++.+++.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~-~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~ll~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRG-LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKLLQD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccc-hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHHHHH
Confidence 456677 778889999998888887661 112222234678889999887666 778899999999775 455556665
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhh------cCcHHHHHHhhcCCC--hhhHHHHHHHHHHhhc
Q psy664 123 GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILN------CSALMCLLHLIQSPK--ESIRKEACWAVSNITA 194 (379)
Q Consensus 123 g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~------~~~l~~L~~lL~~~~--~~v~~~a~~~l~nl~~ 194 (379)
+++.++..+-.+...+....+..+.|++..++.....+.. .|.......+.+++. ..--...+.++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 8889999988887788899999999999877665543332 334444444444332 2234566677788864
Q ss_pred CChHHHHHHHhcCchHH-HHHHHHhCcHHHH-HHHHHHHHHHhcCCCHHHHHHHH-HcCChHHHH---------------
Q psy664 195 GNRQQIQAVIDANIFPS-LIEILQKAEFKTR-KEAAWAITNATSGGTPDQIRYLI-QQGCIEPFC--------------- 256 (379)
Q Consensus 195 ~~~~~~~~~~~~~~i~~-Li~ll~~~~~~v~-~~a~~~l~nl~~~~~~~~~~~l~-~~~~i~~L~--------------- 256 (379)
. +.....+.+...++. .+.-+...+..+| ...+.+|.|+| .....+-..+- +..+++.+.
T Consensus 162 ~-~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~c-Fd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~ 239 (353)
T KOG2973|consen 162 F-EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCC-FDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA 239 (353)
T ss_pred h-hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhh-ccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence 3 333444444433222 2222233455555 45778888876 43333332221 112222211
Q ss_pred ------Hhhc-----cCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh-cCCCHHHHHHHHH
Q psy664 257 ------ELLT-----LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ-SHENIEIYQKAFD 324 (379)
Q Consensus 257 ------~lL~-----~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~-~~~~~~v~~~a~~ 324 (379)
.+|. .+|+.++..-+.+|.-++..... .+.++..|+-..+..+- +.+++++.+.+..
T Consensus 240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G-----------Re~lR~kgvYpilRElhk~e~ded~~~ace~ 308 (353)
T KOG2973|consen 240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG-----------REVLRSKGVYPILRELHKWEEDEDIREACEQ 308 (353)
T ss_pred cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh-----------HHHHHhcCchHHHHHHhcCCCcHHHHHHHHH
Confidence 2232 25789999999999988875543 36788888877776554 4578999999999
Q ss_pred HHHHhcCCCc
Q psy664 325 IIEHYFGSEE 334 (379)
Q Consensus 325 il~~~~~~~~ 334 (379)
+.+.+...++
T Consensus 309 vvq~Lv~~e~ 318 (353)
T KOG2973|consen 309 VVQMLVRLEP 318 (353)
T ss_pred HHHHHHhccc
Confidence 9988887554
No 59
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.56 E-value=2e-06 Score=80.85 Aligned_cols=259 Identities=17% Similarity=0.160 Sum_probs=168.1
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHH-HHH
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK-IQA 118 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~-~~~ 118 (379)
++..++.+| +.++.++..++-..+.|+.--...-.......+=-.|..-|...++++.-..+.|+..|.+...-. .+.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp 684 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP 684 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence 445566667 777778877777777666543233333344444455667777788999988888887776432110 010
Q ss_pred HHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh---HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-
Q psy664 119 VIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT---QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA- 194 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~- 194 (379)
--.|++|.|..+|++...++....+..++.|+...+++. +++. +-=-|+..|.+.+.++|+.|...++.|+.
T Consensus 685 -Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 685 -PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred -chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 114899999999999999999999999999998766643 2221 11236677788889999999999999875
Q ss_pred -CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHH
Q psy664 195 -GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNG 273 (379)
Q Consensus 195 -~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~ 273 (379)
|.. +++..|++-|+..+...|.-..-+|+-... +..-..+++.|+.--..++..++.-++.+
T Consensus 761 iGPq---------dvL~~LlnnLkvqeRq~RvctsvaI~iVae--------~cgpfsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 761 IGPQ---------DVLDILLNNLKVQERQQRVCTSVAISIVAE--------YCGPFSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred cCHH---------HHHHHHHhcchHHHHHhhhhhhhhhhhhHh--------hcCchhhHHHHHhcccCchhHHHHhHHHH
Confidence 322 344455555554443333222222222110 11112346666665666788999999999
Q ss_pred HHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 274 LENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 274 L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
++.++++..+... .|.-.+ ...|+.-+.+.++.-++.|..+|..+.-
T Consensus 824 m~fmFeyig~~s~------dYvy~i-----tPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 824 MCFMFEYIGQASL------DYVYSI-----TPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHHH------HHHHHh-----hHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 9999998776532 333333 5666778888888888888888887654
No 60
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.55 E-value=7.6e-06 Score=75.56 Aligned_cols=303 Identities=14% Similarity=0.111 Sum_probs=201.6
Q ss_pred HHHHhhcCCCCCCcccCchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc
Q psy664 13 PVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF 91 (379)
Q Consensus 13 ~~L~~lL~s~~~~v~~~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 91 (379)
..|+.++++ .+..|..+.-....+.+..++ +++.+++..+.++++++..+. .........++--.++.-|.
T Consensus 5 N~Lv~l~~~-------~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~ 76 (371)
T PF14664_consen 5 NDLVDLLKR-------HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLD 76 (371)
T ss_pred HHHHHHHHh-------CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhc
Confidence 345666655 344454444444555555545 666888999999999999875 33333333344444555555
Q ss_pred CC--ChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHH
Q psy664 92 HA--DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMC 169 (379)
Q Consensus 92 ~~--d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~ 169 (379)
.+ +..-+++|+..+..+..-.. ..+ .+..|++..++.+.+++++.++..|+.+|+.++..++ +.+..+|++..
T Consensus 77 ~~~~~~~ER~QALkliR~~l~~~~-~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~ 151 (371)
T PF14664_consen 77 RDNKNDVEREQALKLIRAFLEIKK-GPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRV 151 (371)
T ss_pred ccCCChHHHHHHHHHHHHHHHhcC-Ccc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHH
Confidence 43 46678899988887765421 111 2345889999999999999999999999999997665 45778999999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-------cH--HHHHHHHHHHHHHhcCCCH
Q psy664 170 LLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-------EF--KTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 170 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-------~~--~v~~~a~~~l~nl~~~~~~ 240 (379)
+.+.+..+..++....+.++-.+. ..|...+.+...--+..++.-+.+. +. +.-+.+..++..+.. +-
T Consensus 152 L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr--sW 228 (371)
T PF14664_consen 152 LLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR--SW 228 (371)
T ss_pred HHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh--cC
Confidence 999998776668888888888885 4455555454433334444333222 22 344556666766653 22
Q ss_pred HHHHHHHH--cCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHH-hhhh---------cCCc-----------------
Q psy664 241 DQIRYLIQ--QGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE-EAKQ---------TGSV----------------- 291 (379)
Q Consensus 241 ~~~~~l~~--~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~-~~~~---------~~~~----------------- 291 (379)
...-.+.. ..++..|++.|..+.+++++.++..+..++..... |... ++..
T Consensus 229 ~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~ 308 (371)
T PF14664_consen 229 PGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSIL 308 (371)
T ss_pred CceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccccccc
Confidence 23333332 25788899999999999999999999998864321 1110 0100
Q ss_pred -------ch--------HHHHHHHhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcC
Q psy664 292 -------NP--------YVVLIEECYGLDKIEFLQSHE-NIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 292 -------~~--------~~~~i~~~g~l~~l~~l~~~~-~~~v~~~a~~il~~~~~ 331 (379)
.. ....+.++|.++.|..+..+. +..+..+|.-+|..++.
T Consensus 309 ~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 309 PHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred CccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 01 123678899999999999876 89999999999987753
No 61
>KOG1517|consensus
Probab=98.53 E-value=1.9e-06 Score=85.45 Aligned_cols=207 Identities=18% Similarity=0.213 Sum_probs=164.9
Q ss_pred hhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-C-C--ChhHHHHHHHHHHHHhCC
Q psy664 6 VIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-K-N--RLSMVRNSVWVLSNLCRG 69 (379)
Q Consensus 6 ~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~-~--~~~~~~~a~~~L~~l~~~ 69 (379)
-..-|+.|..++||+|+-.+.+. ++.|...+++.++....++.| + . +++-+..++.+|+.++++
T Consensus 508 aLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 508 ALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 34569999999999998877766 899999999999999999999 3 2 457778999999999998
Q ss_pred CCCCCChHhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHH
Q psy664 70 KTPPPDFAKVAPALACLSRLLFHA-DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVG 148 (379)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~ 148 (379)
-..........+.+..+...|+++ .+-++.-+|-+|+.|-.+.++.+-.-...++.+.|..+|.++-++++.+|+.+||
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 655556666778899999999885 6889999999999999888877777777899999999999999999999999999
Q ss_pred HhhcC----CchhhHHH---h--------hcCcHH----HHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCch
Q psy664 149 NIVTG----DDQQTQVI---L--------NCSALM----CLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIF 209 (379)
Q Consensus 149 nl~~~----~~~~~~~~---~--------~~~~l~----~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i 209 (379)
.+..+ .+++...+ + -...+. .++.+++..++-++.+..-+++.+..+...++..+.-+.+.
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~ 747 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL 747 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence 98864 33433322 0 112222 45566778889999999999999988877777666555555
Q ss_pred HHH
Q psy664 210 PSL 212 (379)
Q Consensus 210 ~~L 212 (379)
+..
T Consensus 748 ~~~ 750 (1387)
T KOG1517|consen 748 PES 750 (1387)
T ss_pred cch
Confidence 444
No 62
>KOG3678|consensus
Probab=98.53 E-value=2.9e-06 Score=77.36 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=136.4
Q ss_pred HHHHhcCcHHHHHHhhcCCCh--HHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC-CChhhHHHHHHHHHHhh
Q psy664 117 QAVIDAGVCRRLVELLMHDQH--KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS-PKESIRKEACWAVSNIT 193 (379)
Q Consensus 117 ~~~~~~g~i~~L~~lL~~~~~--~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~nl~ 193 (379)
+.+...|++..|+.++..++. +++..|.+.|-.+... ++.+.+...| +..++.+-+. ..++..+..+.+|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 445567899999999999754 5588999999887753 4555566555 5555555533 34788899999999999
Q ss_pred cCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHH
Q psy664 194 AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNG 273 (379)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~ 273 (379)
.++.+..+.++..|.+..++-.....+|.+.+.++.+|+|+...+..+..+.+++..+-+.|+.+-.+.|.-++..+|.+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 99999999999999999999989999999999999999999888888888899999999999999888899999999999
Q ss_pred HHHHHHHcH
Q psy664 274 LENILKLGE 282 (379)
Q Consensus 274 L~~l~~~~~ 282 (379)
++.+....+
T Consensus 331 V~vlat~KE 339 (832)
T KOG3678|consen 331 VAVLATNKE 339 (832)
T ss_pred Hhhhhhhhh
Confidence 998887544
No 63
>KOG1059|consensus
Probab=98.46 E-value=1.9e-05 Score=75.71 Aligned_cols=221 Identities=16% Similarity=0.147 Sum_probs=165.5
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh
Q psy664 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~ 157 (379)
..+++-+-++.+|++.-+-++..|..++..+....++... -.+|+|.+-|+++++.++.+|+..++.+++.++..
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 4456778888999999999999999999988865444433 25799999999999999999999999999887755
Q ss_pred hHHHhhcCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCc-HHHHHHHHHHHH--H
Q psy664 158 TQVILNCSALMCLLHLIQSP-KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAE-FKTRKEAAWAIT--N 233 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~-~~v~~~a~~~l~--n 233 (379)
.- .+.|.+.++|... +..+....+..+++++--.|... ..+++++.+++++.. ..+..+++.++. |
T Consensus 216 yL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 216 YL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVS 285 (877)
T ss_pred cc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeeh
Confidence 32 4578899999654 47777888888888876555533 367889999998764 456666666554 4
Q ss_pred HhcCC--CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh
Q psy664 234 ATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ 311 (379)
Q Consensus 234 l~~~~--~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~ 311 (379)
+.+++ +...++. ++..|-.++.+.|+.++...|-+++.|+...++.-+ .. .+.+.+.+
T Consensus 286 ~s~g~~d~~asiqL-----CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq------a~---------kdlIlrcL 345 (877)
T KOG1059|consen 286 MSSGMSDHSASIQL-----CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ------AH---------KDLILRCL 345 (877)
T ss_pred hccCCCCcHHHHHH-----HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH------Hh---------HHHHHHHh
Confidence 44332 2222322 267888889999999999999999999987765421 11 35567888
Q ss_pred cCCCHHHHHHHHHHHHHhcCCC
Q psy664 312 SHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 312 ~~~~~~v~~~a~~il~~~~~~~ 333 (379)
.+.++.|+.+|..++.-..+.+
T Consensus 346 ~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 346 DDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred ccCCchhHHHHHHHHHHHhhhh
Confidence 9999999999998887665543
No 64
>KOG0213|consensus
Probab=98.45 E-value=5.4e-06 Score=79.56 Aligned_cols=254 Identities=17% Similarity=0.176 Sum_probs=162.2
Q ss_pred HhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh-HHHHHHHhcC
Q psy664 46 IDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN-EKIQAVIDAG 123 (379)
Q Consensus 46 l~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g 123 (379)
+..| +.+..++.+++-.++.++.--...........+=-.|...|..+++++.-..+.|+..|...-. .....- -.+
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP-i~d 883 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP-IKD 883 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC-hhh
Confidence 3444 6677777778777777765432222233333344456677778889998888877776663210 000000 137
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh---HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc--CChH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT---QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA--GNRQ 198 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~~ 198 (379)
++|.|..+|++.+.+++++++..++.|+...+++. +++. +-=-|+.+|...+..+|+.|...++.|+. |..
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq- 959 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ- 959 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH-
Confidence 89999999999999999999999999997655533 2221 11226667777889999999999999975 222
Q ss_pred HHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHH
Q psy664 199 QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 278 (379)
+++..|++-|+..+-..|.-..-+|+-...... -..+++.|++--..++..|+.-++.+++.++
T Consensus 960 --------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~--------pFtVLPalmneYrtPe~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen 960 --------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCG--------PFTVLPALMNEYRTPEANVQNGVLKALSFMF 1023 (1172)
T ss_pred --------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC--------chhhhHHHHhhccCchhHHHHhHHHHHHHHH
Confidence 344555555554433333222222222111001 1235666666666788899999999999999
Q ss_pred HHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 279 KLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
++..+..+ .|.-.+ ...|+.-+.+.+..-++.|..++..+.-
T Consensus 1024 eyigemsk------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1024 EYIGEMSK------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHhh------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 98877643 233223 5666777888888888888888876643
No 65
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.42 E-value=3.8e-07 Score=55.68 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=37.4
Q ss_pred CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 29 HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
+++.++.+++.|++|+|+++| +.+.+++++++|+|+|||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999 9999999999999999984
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.40 E-value=2.7e-05 Score=72.95 Aligned_cols=287 Identities=15% Similarity=0.118 Sum_probs=164.8
Q ss_pred CChHHHHhhcCCCCCCccc--------Cchh---HHHHHhCCChHHHHhcC-----CCChhHHHHHHHHHHHHhCCCCCC
Q psy664 10 GAVPVFIQLLLSPHEDQVT--------HPSV---ETMSLDNNILYPLIDKP-----KNRLSMVRNSVWVLSNLCRGKTPP 73 (379)
Q Consensus 10 g~i~~L~~lL~s~~~~v~~--------~~~~---r~~i~~~g~i~~Ll~lL-----~~~~~~~~~a~~~L~~l~~~~~~~ 73 (379)
.++|.|++||...+++.-. -..| -.......++.+.+.+. +++..-+..++.++.....++...
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence 4789999999886655444 1111 12222333455555555 556667778999999988876544
Q ss_pred CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh-hc--CCChHHHHHHHHHHHHh
Q psy664 74 PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVEL-LM--HDQHKVVSAALRAVGNI 150 (379)
Q Consensus 74 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l-L~--~~~~~i~~~al~~L~nl 150 (379)
.....+..++|.+...+.++.-.+...+.|+++.|+++-.+.+. ..|.++..++. +. .+.+.+..++.|..-|+
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nl 477 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENL 477 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhH
Confidence 44445667788888777766678899999999999976433221 12222222221 11 12333444444444444
Q ss_pred hc--------------------------------------------------CCchhhHHHhhcCcHHHHHHhh------
Q psy664 151 VT--------------------------------------------------GDDQQTQVILNCSALMCLLHLI------ 174 (379)
Q Consensus 151 ~~--------------------------------------------------~~~~~~~~~~~~~~l~~L~~lL------ 174 (379)
+. ..+..... +-.|+.++..+-|
T Consensus 478 v~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~-~~a~~~~~~~~kl~~~isv 556 (858)
T COG5215 478 VDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSD-ILAGFYDYTSKKLDECISV 556 (858)
T ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 42 11110000 0112222222221
Q ss_pred -----cCCC----hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcH-HHHHHHHHHHHHHhcCCCHHHHH
Q psy664 175 -----QSPK----ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEF-KTRKEAAWAITNATSGGTPDQIR 244 (379)
Q Consensus 175 -----~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~-~v~~~a~~~l~nl~~~~~~~~~~ 244 (379)
...+ .+++..-+.+|..+.+..+..+..+-+ .++..++++|.+.++ -+-.+...+|+++.. .-.++.
T Consensus 557 ~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~t~~~~dV~~aIsal~~-sl~e~F- 633 (858)
T COG5215 557 LGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKPTTAFGDVYTAISALST-SLEERF- 633 (858)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCCchhhhHHHHHHHHHHH-HHHHHH-
Confidence 1111 344444555555544433332332222 356677788887744 445678888888753 222222
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC
Q psy664 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE 314 (379)
Q Consensus 245 ~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~ 314 (379)
.-.-..++|+|.+-|...|..+...+...++.+...-+.. .++|++.+ +..|.+.+.++
T Consensus 634 e~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d------f~~y~d~~-----ms~LvQ~lss~ 692 (858)
T COG5215 634 EQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD------FNIYADVL-----MSSLVQCLSSE 692 (858)
T ss_pred HHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh------HHHHHHHH-----HHHHHHHhcCh
Confidence 2233567999999999999999999999999888765554 66788877 66677766655
No 67
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.39 E-value=6.8e-07 Score=54.54 Aligned_cols=40 Identities=30% Similarity=0.599 Sum_probs=37.6
Q ss_pred ChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 196 NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 196 ~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
++++++.+++.|++|.|+++|++.+++++++|+|+|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999986
No 68
>KOG4413|consensus
Probab=98.36 E-value=8e-05 Score=65.34 Aligned_cols=263 Identities=16% Similarity=0.139 Sum_probs=182.5
Q ss_pred HHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh----HHHHHHHhcCcHHHHHHhhcC
Q psy664 59 SVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN----EKIQAVIDAGVCRRLVELLMH 134 (379)
Q Consensus 59 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~----~~~~~~~~~g~i~~L~~lL~~ 134 (379)
...+|-.|...+.+ ........|.|-.-|..+|..+..-+|..++.|..+.+ ..+..++..|+++.++.++..
T Consensus 63 cVscLERLfkakeg---ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEG---AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccc---hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 55566666655422 22345667777777888899999999999999987765 234556688999999999999
Q ss_pred CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHH--HHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHH
Q psy664 135 DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCL--LHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSL 212 (379)
Q Consensus 135 ~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L--~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 212 (379)
++.++...|...+..|+... .....+++...++-+ ..+-...+.-.|......|-.+.+-+++.......+|++..|
T Consensus 140 eddeVAkAAiesikrialfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred CcHHHHHHHHHHHHHHHhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 99999999999999998643 444556666665543 334444566778888888888888888888899999999999
Q ss_pred HHHHHh-CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHHHHHHHcHHhhhhcC
Q psy664 213 IEILQK-AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQVALNGLENILKLGEEEAKQTG 289 (379)
Q Consensus 213 i~ll~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~ 289 (379)
..-|+. .|.-++..+......+.. .....+++.+.|++..+++++.. .||.-.-.++-+...++....-..-
T Consensus 219 eaElkGteDtLVianciElvteLae--teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv--- 293 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAE--TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV--- 293 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHH--HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc---
Confidence 887776 566778888888777753 34455678889999999999864 4555455566666666543322210
Q ss_pred CcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 290 SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 290 ~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
..+..|..+.. +++.-.....+.+++.+..|...+..+=+.
T Consensus 294 seeaicealii--aidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 294 SEEAICEALII--AIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred CHHHHHHHHHH--HHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 01122322211 234445566677888888888887766544
No 69
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.35 E-value=1.6e-05 Score=74.96 Aligned_cols=252 Identities=15% Similarity=0.098 Sum_probs=151.6
Q ss_pred ChHHHHhhcCCCCCCccc-----CchhH---------HHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCC
Q psy664 11 AVPVFIQLLLSPHEDQVT-----HPSVE---------TMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPD 75 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~-----~~~~r---------~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~ 75 (379)
++...+++|+++.+++++ ..... ..+...|. .|.+-| ...++++-....++..+.+...-..-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 356778899999888877 11111 11222232 234445 56677766555555544443221111
Q ss_pred hHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCc
Q psy664 76 FAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDD 155 (379)
Q Consensus 76 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~ 155 (379)
..-..+++|.+...|++....++...+..++.|+...++.+..--=..+.-.|+..|.+.+.++++.|..++|.|+..-.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 12357899999999999999999999999999998776533211001244557778888999999999999999885322
Q ss_pred hhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 156 QQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 156 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
. ..++..|+.-|+..+...|....-+|+-.+..+. -..++|.|+.=-.+++..++.-.+.+++.+.
T Consensus 763 P-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 763 P-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred H-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 1 1334445555544433333333333333322110 1145666665555667788888888888776
Q ss_pred cCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 236 SGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 236 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
..-......++. -+.+.|-+.|.+.|+--+..+...+..+.-.
T Consensus 829 eyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 829 EYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 443444444443 2466677777788877777777777666544
No 70
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.32 E-value=0.00025 Score=66.39 Aligned_cols=150 Identities=16% Similarity=0.043 Sum_probs=109.1
Q ss_pred CChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHH
Q psy664 40 NILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQ 117 (379)
Q Consensus 40 g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~ 117 (379)
.+++.++..| ..+.++...+++++.. .+.+ ..+..|+..|.+.++.++..+..+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~---~~~~--------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLA---QEDA--------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc---cCCh--------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 3556666666 4456666666665531 1111 147888889988888899999988886532
Q ss_pred HHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy664 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
.+..+.|+.+|.+.++.++..++.+++... ....+.+..+|++.++.++..|+++++.+-.
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--- 176 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR--- 176 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc---
Confidence 235677888889999999988888887622 1234678888888899999999999998742
Q ss_pred HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHH
Q psy664 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA 234 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl 234 (379)
...++.|...+.+.++.||..|++++..+
T Consensus 177 --------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 --------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred --------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 24566677888888999999999988764
No 71
>KOG2734|consensus
Probab=98.31 E-value=0.00049 Score=62.80 Aligned_cols=242 Identities=17% Similarity=0.102 Sum_probs=174.5
Q ss_pred HHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCC-----h----HHHHHHHhcCcHHHH
Q psy664 58 NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGP-----N----EKIQAVIDAGVCRRL 128 (379)
Q Consensus 58 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~-----~----~~~~~~~~~g~i~~L 128 (379)
.++.-+.-++..+ .-....+...+++.|+.+|.++|.++.......+.-+++.+ . ..++++++.++++.|
T Consensus 103 d~IQ~mhvlAt~P-dLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLATMP-DLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhcCh-HHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 3444555555554 23345566789999999999999999999999999998542 1 345677888999999
Q ss_pred HHhhcCCChHH------HHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChHHH
Q psy664 129 VELLMHDQHKV------VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP--KESIRKEACWAVSNITAGNRQQI 200 (379)
Q Consensus 129 ~~lL~~~~~~i------~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~ 200 (379)
++.+..-++++ ...++..+-|++.-.+.....+.+.|++.+|++-+... -...+..|..+++-+...+.+..
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 99887643333 56678899999988888888888899999998866433 25667778888887767666666
Q ss_pred HHHHhcCchHHHHHHHH---hC------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHH
Q psy664 201 QAVIDANIFPSLIEILQ---KA------EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVAL 271 (379)
Q Consensus 201 ~~~~~~~~i~~Li~ll~---~~------~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 271 (379)
..+..-+.+..+++-+. .. +.+.-.+...+||.++. .++....+....+++...-++.. ....+..++
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal 338 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSAL 338 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence 66666677777776553 11 35667888889998863 44555666665566554444444 556778889
Q ss_pred HHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh
Q psy664 272 NGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ 311 (379)
Q Consensus 272 ~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~ 311 (379)
.+|..++...+ ..++|..+.+.+|+..+..+-
T Consensus 339 kvLd~am~g~~--------gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 339 KVLDHAMFGPE--------GTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHHhCCC--------chHHHHHHHHHHhHHHHHHHH
Confidence 99988887554 346789999999999986644
No 72
>KOG1242|consensus
Probab=98.29 E-value=2.7e-05 Score=73.75 Aligned_cols=265 Identities=15% Similarity=0.116 Sum_probs=167.7
Q ss_pred HHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHH-HHHHHHHHhcCCChHHHHHHH
Q psy664 43 YPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 43 ~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~-~a~~aL~~l~~~~~~~~~~~~ 120 (379)
+-+.+++ ..+..-+.-+.|.++.+..+. ........+++..+...+.+....... .+..++-....+-. ...
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~ 210 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPF 210 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCC
Confidence 3445555 666777888899999888774 455556678889999888876543333 33333322221111 112
Q ss_pred hcC---cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy664 121 DAG---VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 121 ~~g---~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
+.+ .+|.++..+.+....++.+|..+...+...-+.+.- ..++|.++.-+......-+..++..++.++.+.+
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP 286 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence 233 455555556667888888888887776654333321 1234555444444467788999999999988888
Q ss_pred HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
.+....+ ..++|.+.+.|.+.++++|+.+..++.++++.-+...++.+ ++.|++-+.++..++.+ ++..|+.-
T Consensus 287 ~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~-----ip~Lld~l~dp~~~~~e-~~~~L~~t 359 (569)
T KOG1242|consen 287 KQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKI-----IPTLLDALADPSCYTPE-CLDSLGAT 359 (569)
T ss_pred HHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHH-----HHHHHHHhcCcccchHH-HHHhhcce
Confidence 7766544 48999999999999999999999999998865444444443 67777777765544433 33444332
Q ss_pred HHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCccc
Q psy664 278 LKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEED 336 (379)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~ 336 (379)
.....- ..+-..++ +..+.+=++..+..+.+++..|++|.+.--+|.
T Consensus 360 tFV~~V-------~~psLalm-----vpiL~R~l~eRst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 360 TFVAEV-------DAPSLALM-----VPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred eeeeee-------cchhHHHH-----HHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH
Confidence 221110 11112222 344455556677788899999999988765444
No 73
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.25 E-value=0.00024 Score=65.74 Aligned_cols=239 Identities=13% Similarity=0.140 Sum_probs=170.3
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCc
Q psy664 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRAVGNIVTGDD 155 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~L~nl~~~~~ 155 (379)
......+.+..++-+++.+++..+.+++.++..+. +..+.+.+.++--.++.-|..+ +..=++.|++.+..+.....
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~ 100 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK 100 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC
Confidence 33445555555555566999999999999999876 5667788877666666667654 44457899999998875422
Q ss_pred hhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 156 QQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 156 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
.. ..+..+++..++.+..+.+...+..|..++.-++-.+|+. +...|.+..+++.+.++..++....+.++..++
T Consensus 101 ~~--~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 101 GP--KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred Cc--ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 11 1235578889999999999999999999999998877764 557899999999998887778888999999986
Q ss_pred cCCCHHHHHHHHHcCChHHHHHhhcc-------CCH--HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH
Q psy664 236 SGGTPDQIRYLIQQGCIEPFCELLTL-------LDA--KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK 306 (379)
Q Consensus 236 ~~~~~~~~~~l~~~~~i~~L~~lL~~-------~d~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~ 306 (379)
. ++...+++...--++.++.-+.+ ++. +-...+..++..+++..+.. +.-...+..+++.
T Consensus 176 d--~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL---------l~l~~~~~~~lks 244 (371)
T PF14664_consen 176 D--SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL---------LYLSMNDFRGLKS 244 (371)
T ss_pred C--CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce---------eeeecCCchHHHH
Confidence 3 45555555432223333333222 122 34566777788888755432 1222333467888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 307 IEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 307 l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
|...+..++.++++....++-.+|.-.
T Consensus 245 Lv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 245 LVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 888999999999999999998888754
No 74
>KOG1062|consensus
Probab=98.24 E-value=0.00013 Score=71.06 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=86.8
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 129 (379)
+++.-++..|..+|+++|... ...++.|.+.+++++.++-++..|+.|...+....++..+. +++...
T Consensus 118 s~nq~vVglAL~alg~i~s~E-------mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~ 185 (866)
T KOG1062|consen 118 SSNQYVVGLALCALGNICSPE-------MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFR 185 (866)
T ss_pred CCCeeehHHHHHHhhccCCHH-------HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHH
Confidence 455556667777777777653 45678899999999999999999999999888766655543 345566
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC---------------CChhhHHHHHHHHHHhhc
Q psy664 130 ELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS---------------PKESIRKEACWAVSNITA 194 (379)
Q Consensus 130 ~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---------------~~~~v~~~a~~~l~nl~~ 194 (379)
.+|.+.+..+...++..+-.++..+++......+ +++-++..|++ ++|-++..+++.|+-+-.
T Consensus 186 ~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 186 KLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence 6666666777777777776666655444433332 34444443321 245566666666665544
Q ss_pred CCh
Q psy664 195 GNR 197 (379)
Q Consensus 195 ~~~ 197 (379)
+++
T Consensus 264 ~d~ 266 (866)
T KOG1062|consen 264 NDA 266 (866)
T ss_pred CCc
Confidence 433
No 75
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=6.8e-06 Score=76.22 Aligned_cols=187 Identities=10% Similarity=0.079 Sum_probs=141.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC
Q psy664 98 LADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP 177 (379)
Q Consensus 98 ~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 177 (379)
...++..|..++..-...+.-+.+..+.+.|+++|..++..+...+...++|.+..-......++..|+++.+.+++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34445555566655445555566778899999999999999999999999999987777778899999999999999999
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHH-HHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC--CCHHHHHHHHHcC----
Q psy664 178 KESIRKEACWAVSNITAGNRQQIQ-AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG--GTPDQIRYLIQQG---- 250 (379)
Q Consensus 178 ~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~--~~~~~~~~l~~~~---- 250 (379)
+..+++...|++..+..+.++..+ +++....+..++++..+++..++......+.|++.. .+.+....++...
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999999887766654 566667788899999999999999999999999841 2111122222111
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 251 CIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 251 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
..+.|.+-+...++-.....+..|.+++...+..
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l 599 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTL 599 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchH
Confidence 3455666677777766666677788877765544
No 76
>KOG1059|consensus
Probab=98.23 E-value=0.00011 Score=70.76 Aligned_cols=216 Identities=13% Similarity=0.135 Sum_probs=155.7
Q ss_pred HHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHh
Q psy664 43 YPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121 (379)
Q Consensus 43 ~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~ 121 (379)
+-++.+| ++.+-++..|+.++..++..-. ...+.++|.|..-|.++|+.|+..|...++.|+..++.+.-
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYP-----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc----
Confidence 3445566 6667777778877777765431 24678999999999999999999999999999987765432
Q ss_pred cCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHH--HhhcCCh
Q psy664 122 AGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVS--NITAGNR 197 (379)
Q Consensus 122 ~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~--nl~~~~~ 197 (379)
..-|.+.++|-. .+..+....+..+++++--.+...+ .+++.|..++++.. ..+..++..++- ||..|.+
T Consensus 218 -~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred -cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 345778888765 4667888899999999865544433 56888999998776 556666655542 4555543
Q ss_pred HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
++-..+. =.+..|-.++.+.|+.++.-++-+++.+. ..++..++.- -+.++..|++.|+.++..|+..++-|
T Consensus 292 d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~-ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 292 DHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKIL-KTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHh-hhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 3322111 13566777788899999999999999987 4444444432 45678889999999999999998888
Q ss_pred HHHc
Q psy664 278 LKLG 281 (379)
Q Consensus 278 ~~~~ 281 (379)
....
T Consensus 364 Vskk 367 (877)
T KOG1059|consen 364 VSKK 367 (877)
T ss_pred hhhh
Confidence 7644
No 77
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.18 E-value=7.7e-06 Score=59.32 Aligned_cols=86 Identities=35% Similarity=0.455 Sum_probs=69.8
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q psy664 83 LACLSRLL-FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVI 161 (379)
Q Consensus 83 l~~L~~lL-~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~ 161 (379)
+|.|++.| +++++.++..++++|+.+.. ..+++.|+++++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 78899999999999995521 135899999999999999999999999873
Q ss_pred hhcCcHHHHHHhhcCCC-hhhHHHHHHHHH
Q psy664 162 LNCSALMCLLHLIQSPK-ESIRKEACWAVS 190 (379)
Q Consensus 162 ~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~ 190 (379)
+...++.|.+++.+++ ..+|..|.++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2346888999997765 567899998875
No 78
>KOG4413|consensus
Probab=98.18 E-value=0.00014 Score=63.84 Aligned_cols=197 Identities=16% Similarity=0.163 Sum_probs=145.2
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch----hhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ----QTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~----~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 199 (379)
..+-|-.-|.+++..++.-++..++.|..+.+. ....+++.++++.++..+-..+.++.+.|...+..++ -.+..
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria-lfpaa 161 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA-LFPAA 161 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcHHH
Confidence 344444556678999999999999999877652 2345668899999999999999999999999999995 45667
Q ss_pred HHHHHhcCchHHHH--HHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHH
Q psy664 200 IQAVIDANIFPSLI--EILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLEN 276 (379)
Q Consensus 200 ~~~~~~~~~i~~Li--~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~ 276 (379)
...+..+++...+- ++....+.-+|...+..|..+. .-+++...++..+|.+..|..-|+. +|.-++..++...+.
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieif-SiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIF-SISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHH-hcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 77888887776643 3444445677888888888876 6788888899999999998888876 788888899888888
Q ss_pred HHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCC
Q psy664 277 ILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE--NIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 277 l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~--~~~v~~~a~~il~~~~~~~ 333 (379)
++...-. .+.+.+.|.++.|.++...- ++--..++.-+..+||+.+
T Consensus 241 LaeteHg-----------reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgke 288 (524)
T KOG4413|consen 241 LAETEHG-----------REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKE 288 (524)
T ss_pred HHHHhhh-----------hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcch
Confidence 8764332 24566677777777666433 2333334555555666543
No 79
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.17 E-value=3.1e-05 Score=67.17 Aligned_cols=188 Identities=14% Similarity=0.199 Sum_probs=118.4
Q ss_pred cCCChHHHHHHHHHHHHhhcCC--chhhHHHhhc--CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCc
Q psy664 133 MHDQHKVVSAALRAVGNIVTGD--DQQTQVILNC--SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANI 208 (379)
Q Consensus 133 ~~~~~~i~~~al~~L~nl~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~ 208 (379)
.+.+++.+..++..|..++.+. ......+.+. .+++.+...+.+....+.+.||.++..++...........+ .+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 5578999999999999998766 2222222211 45566777777777899999999999998755554554433 68
Q ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhh
Q psy664 209 FPSLIEILQKAEFKTRKEAAWAITNATSGGT-PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287 (379)
Q Consensus 209 i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~ 287 (379)
+|.|++.+.++...++..|..+|..++...+ ...+ ..+.+...+.++++.++..++..+..++...+.....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 8999999888888899999999999985443 1211 1556666788899999999999999998876611100
Q ss_pred cCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 288 TGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 288 ~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
.... ..+ ....+.+...+.+++++|++.|...+..|+...+
T Consensus 169 ---l~~~-~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 169 ---LQKS-AFL--KQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ---G--H-HHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred ---hccc-chH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 0000 001 2236778889999999999999999988876544
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.16 E-value=0.00051 Score=64.35 Aligned_cols=218 Identities=19% Similarity=0.110 Sum_probs=145.9
Q ss_pred CChHHHHhhcCC-CCCCcccCchhHHHH-HhCC-ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHH
Q psy664 10 GAVPVFIQLLLS-PHEDQVTHPSVETMS-LDNN-ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALAC 85 (379)
Q Consensus 10 g~i~~L~~lL~s-~~~~v~~~~~~r~~i-~~~g-~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 85 (379)
.+++.++..|.. ++..+.... ..-.. .+.. .+..|++.| +.+..++..++.+|..+- .....+.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~a-a~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~ 121 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACA-ALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPW 121 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHH-HHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHH
Confidence 357778888854 433333210 00000 1111 278888988 777778889998887432 2347788
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcC
Q psy664 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCS 165 (379)
Q Consensus 86 L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~ 165 (379)
|..+|.+.++.++..++.+++.... ...+.+..+|+++++.++..|+++||.+-. ..
T Consensus 122 L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~ 178 (410)
T TIGR02270 122 LEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHEDALVRAAALRALGELPR-----------RL 178 (410)
T ss_pred HHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------cc
Confidence 9999999999999888877766221 234678888999999999999999998753 24
Q ss_pred cHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHh----c------------------CchHHHHHHHHhCcHHH
Q psy664 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID----A------------------NIFPSLIEILQKAEFKT 223 (379)
Q Consensus 166 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~----~------------------~~i~~Li~ll~~~~~~v 223 (379)
.++.|...+.+.++.||..|+++++.+ +.+.....+.. . ..++.|..+++. +.+
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~l--G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~v 254 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLA--GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AAT 254 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhh
Confidence 566788889999999999999999776 22322222111 1 234444455544 348
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 224 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
+..++++++.+ +++. .++.|+..+.++ .+...+-+++..|+-.
T Consensus 255 r~~a~~AlG~l---g~p~---------av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 255 RREALRAVGLV---GDVE---------AAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHHHc---CCcc---------hHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 88888888874 2332 366777777543 3888888888888753
No 81
>KOG1062|consensus
Probab=98.15 E-value=0.00081 Score=65.73 Aligned_cols=225 Identities=12% Similarity=0.148 Sum_probs=151.1
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHH
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV 119 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~ 119 (379)
+.|-+-+++ ..++.+++.|+.|...+-+.. | ......++...++|.+.+..|...++..+..++..+++....+
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P----~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f 217 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKV-P----DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF 217 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-c----hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence 345566666 788889999999988888765 2 2456688899999999999999999888888988777766665
Q ss_pred HhcCcHHHHHHhhc---------------CCChHHHHHHHHHHHHhhcCCchhhHHHhhc--------------C---cH
Q psy664 120 IDAGVCRRLVELLM---------------HDQHKVVSAALRAVGNIVTGDDQQTQVILNC--------------S---AL 167 (379)
Q Consensus 120 ~~~g~i~~L~~lL~---------------~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~--------------~---~l 167 (379)
-+ .++.++..|+ -++|-++...++.|+-+..++....+.+-+- | +-
T Consensus 218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY 295 (866)
T KOG1062|consen 218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY 295 (866)
T ss_pred HH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 54 5566665554 1378889999999998887766554433210 0 00
Q ss_pred HHHHHhhc-CCChhhHHHHHHHHHHhhcCChHHHHHHHhcC----------c----hHHHHHHHHhCcHHHHHHHHHHHH
Q psy664 168 MCLLHLIQ-SPKESIRKEACWAVSNITAGNRQQIQAVIDAN----------I----FPSLIEILQKAEFKTRKEAAWAIT 232 (379)
Q Consensus 168 ~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~----------~----i~~Li~ll~~~~~~v~~~a~~~l~ 232 (379)
..+..++. .++..+|..|+.+|+.+..+.+.+++.+.-.. . =..++++|++.|..+|++|+..+.
T Consensus 296 E~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~ 375 (866)
T KOG1062|consen 296 ECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSY 375 (866)
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 11111111 23355666666666665544444433221111 1 135788999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 233 NATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 233 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
.++. ...+..+ +..|++.|...|++.+..+...+..+++.
T Consensus 376 ~lvn---~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 376 ALVN---ESNVRVM-----VKELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred HHhc---cccHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 8873 3344444 56788888888888888887777776654
No 82
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.15 E-value=0.00012 Score=63.87 Aligned_cols=226 Identities=16% Similarity=0.100 Sum_probs=147.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhcCCChHHHHHHHhc-CcHHHH
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH--ADPDVLADACWAISYLSDGPNEKIQAVIDA-GVCRRL 128 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~L 128 (379)
+.-.+.-|+.++.++..........-....+-..++..++. .+.+++...+.+++-++..+ ...+.+-+. ..+.-+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH
Confidence 33445567788888877652222222234455667777764 46899999999999988765 333333332 456777
Q ss_pred HHhhcCC-ChHHHHHHHHHHHHhhcCCc-hhh-HHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHHHHhhcC--------
Q psy664 129 VELLMHD-QHKVVSAALRAVGNIVTGDD-QQT-QVILNCSALMCLLHLIQSP--KESIRKEACWAVSNITAG-------- 195 (379)
Q Consensus 129 ~~lL~~~-~~~i~~~al~~L~nl~~~~~-~~~-~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~-------- 195 (379)
+.+++.. .+++.+-++.++.|++...+ ... +.+...++.+..-.++... +.+++...-++-+.+...
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 7777664 77888999999999986332 222 3333333444444444332 344444433333322111
Q ss_pred -------------Ch---------HHHHHHHhc--CchHHHHHHHHhCcHH-HHHHHHHHHHHHhcCCCHHHHHHHHHcC
Q psy664 196 -------------NR---------QQIQAVIDA--NIFPSLIEILQKAEFK-TRKEAAWAITNATSGGTPDQIRYLIQQG 250 (379)
Q Consensus 196 -------------~~---------~~~~~~~~~--~~i~~Li~ll~~~~~~-v~~~a~~~l~nl~~~~~~~~~~~l~~~~ 250 (379)
+| ..++.+.+. .++..|+++++.+.+. ...-||.-|..++ ...|+....+...|
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~V-r~~PE~~~vl~Kyg 399 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLV-RASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHH-HhCchHHHHHHHhh
Confidence 11 123333333 4788899999988776 4566888888887 67888888888999
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHHH
Q psy664 251 CIEPFCELLTLLDAKIIQVALNGLENILK 279 (379)
Q Consensus 251 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 279 (379)
+=+.+++++.++|++|+-.|+.++..++.
T Consensus 400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999988775
No 83
>KOG1242|consensus
Probab=98.12 E-value=0.00049 Score=65.51 Aligned_cols=278 Identities=15% Similarity=0.129 Sum_probs=170.9
Q ss_pred HhCCChHHHHhcC-CCChhHHH-HHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh-
Q psy664 37 LDNNILYPLIDKP-KNRLSMVR-NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN- 113 (379)
Q Consensus 37 ~~~g~i~~Ll~lL-~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~- 113 (379)
.+.+.+..+-..+ +......+ .+..++-..+..-. ..........+|.++....+..+.++..+..+...+...-+
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 3445555555555 33333333 34444444433321 11122334566777777777778888888777765543221
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 114 EKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 114 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
...+ -+++.++.-+....++.+..++..+|.++...+.+.. ..-..++|.+.+.|.+.++++|+.+..++.+++
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 1112 2345555555555788889999999998877666655 344679999999999999999999999999987
Q ss_pred c--CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHHhhccCCHHHHHH
Q psy664 194 A--GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQV 269 (379)
Q Consensus 194 ~--~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~ 269 (379)
. .+++ ++ .++|.|++.+.++.-.+. ++...|+.-...+ +...... +++.|-.-+...+..+.+.
T Consensus 324 svidN~d-I~-----~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr~ 391 (569)
T KOG1242|consen 324 SVIDNPD-IQ-----KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKRK 391 (569)
T ss_pred HhhccHH-HH-----HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhhh
Confidence 5 3333 33 457888888876543332 3444443311111 1111111 1445555566677788899
Q ss_pred HHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCccc--ccCCCC
Q psy664 270 ALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEED--TRVAPC 342 (379)
Q Consensus 270 al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~--~~~~~~ 342 (379)
+...+.|++.-.++... ..+|...+ +..+..-.....++++..+.+.|....++-.+. +++-|+
T Consensus 392 t~~IidNm~~LveDp~~----lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~ 457 (569)
T KOG1242|consen 392 TAIIIDNMCKLVEDPKD----LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPE 457 (569)
T ss_pred HHHHHHHHHHhhcCHHH----HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccH
Confidence 99999999988744433 45555555 666777777779999998888886555543222 344555
No 84
>KOG2259|consensus
Probab=98.12 E-value=4.5e-05 Score=72.60 Aligned_cols=213 Identities=13% Similarity=0.086 Sum_probs=138.2
Q ss_pred HHHHHHHHHhCCCCCCCChHhHhh-------------hHHHHHHhhcCCChHHHHHHHHHHH---HhcCCC--hHHHHHH
Q psy664 58 NSVWVLSNLCRGKTPPPDFAKVAP-------------ALACLSRLLFHADPDVLADACWAIS---YLSDGP--NEKIQAV 119 (379)
Q Consensus 58 ~a~~~L~~l~~~~~~~~~~~~~~~-------------~l~~L~~lL~~~d~~v~~~a~~aL~---~l~~~~--~~~~~~~ 119 (379)
.++..|.+++.+.+.........| +....++++.+++.+|+..|...++ |..-.+ .+..+.-
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 333348888877655544444444 5667888888888999998866655 444111 1111222
Q ss_pred HhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHh--hc---
Q psy664 120 IDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNI--TA--- 194 (379)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl--~~--- 194 (379)
....+...+.+.+++-+..++..|..+||.+-.-+++.....++..++..+-+ .. .-.+..-...++- +.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRR----kr-~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRR----KR-TAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhh----hh-hcccchHHHHhcCCcccCcc
Confidence 22346788888899999999999999999887666666655555443332211 11 0111111112221 00
Q ss_pred --------CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHH
Q psy664 195 --------GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266 (379)
Q Consensus 195 --------~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 266 (379)
..++.-..++.+|.-..+++-+.+.-.+||+.|+..++.+. ...+.... ..+..|++++.++...+
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La-~ssP~FA~-----~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLA-TSSPGFAV-----RALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHH-cCCCCcHH-----HHHHHHHHHhccHHHHH
Confidence 12223345677788888888888888899999999999987 43443322 23789999999999999
Q ss_pred HHHHHHHHHHHHHHc
Q psy664 267 IQVALNGLENILKLG 281 (379)
Q Consensus 267 ~~~al~~L~~l~~~~ 281 (379)
+..++.+|..|....
T Consensus 427 RL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 427 RLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998874
No 85
>KOG0213|consensus
Probab=98.12 E-value=0.00084 Score=65.10 Aligned_cols=304 Identities=16% Similarity=0.130 Sum_probs=181.0
Q ss_pred hhhCCChHHHHhhcCC----C-CCCccc-CchhHHH---HHhCCChH---HHHhcC-----CCChhHHHHHHHHHHHHhC
Q psy664 6 VIDAGAVPVFIQLLLS----P-HEDQVT-HPSVETM---SLDNNILY---PLIDKP-----KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 6 ~~~~g~i~~L~~lL~s----~-~~~v~~-~~~~r~~---i~~~g~i~---~Ll~lL-----~~~~~~~~~a~~~L~~l~~ 68 (379)
++++=++|.|+.+|++ . +..-++ +-.+..+ +...+.++ +|++++ +....++..++.+++.++.
T Consensus 503 vasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalae 582 (1172)
T KOG0213|consen 503 VASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAE 582 (1172)
T ss_pred HHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHH
Confidence 4556678888887753 2 333333 2222222 23334444 334443 4456667788999999998
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVG 148 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~ 148 (379)
...| ........++..|.+-++..-......-+.|+++|+...+......+...++-.++.=..+++++.+.-.+..+.
T Consensus 583 aa~P-ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~ 661 (1172)
T KOG0213|consen 583 AATP-YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVK 661 (1172)
T ss_pred hcCC-cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 7644 334445567777777777666677778889999999777666666676677888888889999999999999999
Q ss_pred HhhcCCchhhHHHhhcCcHHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHH
Q psy664 149 NIVTGDDQQTQVILNCSALMCLLHLIQSPK----ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTR 224 (379)
Q Consensus 149 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~ 224 (379)
.+|..+ ......+....+|.+........ ..--+....+-..+|. ++-....+..++.=+.+..+..|
T Consensus 662 qcc~t~-Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~-------KvG~~~~v~R~v~~lkde~e~yr 733 (1172)
T KOG0213|consen 662 QCCATD-GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA-------KVGSDPIVSRVVLDLKDEPEQYR 733 (1172)
T ss_pred HHhccc-CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH-------HhCchHHHHHHhhhhccccHHHH
Confidence 998643 33344445566776665542211 1111111222222221 12222345556666777777888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccH
Q psy664 225 KEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGL 304 (379)
Q Consensus 225 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l 304 (379)
+.++.++.++...-....+..=.+...+..++..+..++.+.- ..+.++..+...-... ..+|...| .
T Consensus 734 km~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r------~kpylpqi-----~ 801 (1172)
T KOG0213|consen 734 KMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGR------VKPYLPQI-----C 801 (1172)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhc------cccchHHH-----H
Confidence 8888888877643222222222222345566666655433222 2334444443322221 44555555 5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 305 DKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 305 ~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
..+...++++.+.++++|.+++..+.
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la 827 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLA 827 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 66778889999999999998777553
No 86
>PF05536 Neurochondrin: Neurochondrin
Probab=98.11 E-value=0.00026 Score=68.98 Aligned_cols=220 Identities=17% Similarity=0.138 Sum_probs=149.3
Q ss_pred hHHHHhhcCCCCCCccc----------------CchhHHHHHhCCChHHHHhcC-C-------CChhHHHHHHHHHHHHh
Q psy664 12 VPVFIQLLLSPHEDQVT----------------HPSVETMSLDNNILYPLIDKP-K-------NRLSMVRNSVWVLSNLC 67 (379)
Q Consensus 12 i~~L~~lL~s~~~~v~~----------------~~~~r~~i~~~g~i~~Ll~lL-~-------~~~~~~~~a~~~L~~l~ 67 (379)
+...+++|++.+ +-+. ....+..+.+.=+.+.+-++| + +....+.-+..+|+.+|
T Consensus 7 l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 455566777665 3333 223344566666677788888 3 33566778999999999
Q ss_pred CCCCCCCChHhHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHH
Q psy664 68 RGKTPPPDFAKVAPALACLSRLLFHADP-DVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRA 146 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~ 146 (379)
..+ .........+-+|.|+..+.+.+. ++...++.+|..++..+ +..+.+++.|.++.|.+.+.+ .+...+.|+.+
T Consensus 86 ~~~-~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDP-ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CCh-hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 965 444455667899999999987776 99999999999999554 788999999999999999887 55678899999
Q ss_pred HHHhhcCCchhhH---HHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHH-HHHHHhc----CchHHHHHHHHh
Q psy664 147 VGNIVTGDDQQTQ---VILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ-IQAVIDA----NIFPSLIEILQK 218 (379)
Q Consensus 147 L~nl~~~~~~~~~---~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~----~~i~~Li~ll~~ 218 (379)
+.+++.......- .-.-..+++.+.+.+.......+-+++..++++....+.. ....... .+...+.+++++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9998865431110 0001145666777777667778888899999986654211 1111111 344555566655
Q ss_pred C-cHHHHHHHHHHHHHHh
Q psy664 219 A-EFKTRKEAAWAITNAT 235 (379)
Q Consensus 219 ~-~~~v~~~a~~~l~nl~ 235 (379)
. .+.-|..++...+.++
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 4 4556666666666655
No 87
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.11 E-value=4.8e-06 Score=54.50 Aligned_cols=55 Identities=31% Similarity=0.648 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHH
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA 234 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl 234 (379)
+.+|..|+|+|++++...++..+... ..+++.|+.+|.++++.||..|+|+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999888888777644 47999999999999999999999999875
No 88
>KOG1824|consensus
Probab=98.09 E-value=5.2e-05 Score=74.89 Aligned_cols=258 Identities=14% Similarity=0.182 Sum_probs=150.7
Q ss_pred HHHhhcCCCCCCccc-------CchhHH-----HHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHh
Q psy664 14 VFIQLLLSPHEDQVT-------HPSVET-----MSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA 80 (379)
Q Consensus 14 ~L~~lL~s~~~~v~~-------~~~~r~-----~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 80 (379)
.|++-+.++|.+.|. ..-.++ .--....+..++++| +.+.+++..|..|++-|.+. .+.....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK----vke~~le 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK----VKEDQLE 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh----chHHHHH
Confidence 677778888888877 111111 112334567788888 88999999999999999854 2334455
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHH-HhcCCChHHHHHHHhcCcHHHHHHhhcC------CChHHHHHHHHHHHHhhcC
Q psy664 81 PALACLSRLLFHADPDVLADACWAIS-YLSDGPNEKIQAVIDAGVCRRLVELLMH------DQHKVVSAALRAVGNIVTG 153 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~-~l~~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~i~~~al~~L~nl~~~ 153 (379)
.++..|..-+-++.++.+.-+..+|. .++.-++ .....+...+++++...+.. +...++-.++.+++.+...
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P-~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP-SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC-ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 66777776655555555544433332 2222221 11223333444555544432 3444788888888876643
Q ss_pred CchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHH
Q psy664 154 DDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAI 231 (379)
Q Consensus 154 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l 231 (379)
-...... ...+.+..+..-+.++...||+.|+.+|+.++. ++.+... +++..|.+-|... .+...+--..+|
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCL 237 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2222221 344566666667778889999999999999876 3333333 2333444433332 333333444555
Q ss_pred HHHhcCCCHHHHHHHHHcCChHHHHHhh---ccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 232 TNATSGGTPDQIRYLIQQGCIEPFCELL---TLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 232 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL---~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
+.++.......-.. -..+++.+.+.. ..+|.++++.++.++..++...+..
T Consensus 238 ~~i~r~ag~r~~~h--~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSH--LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHhcchhhcc--cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 55543221110000 124566666666 6678899999999999999988765
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.09 E-value=1.1e-05 Score=58.50 Aligned_cols=86 Identities=29% Similarity=0.423 Sum_probs=69.5
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 125 CRRLVELL-MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 125 i~~L~~lL-~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
++.|++.| +++++.++..++++|+.+- +...++.|..+++++++.+|..|+++++.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888988 8889999999999999442 1145899999999999999999999999882
Q ss_pred HhcCchHHHHHHHHhC-cHHHHHHHHHHHH
Q psy664 204 IDANIFPSLIEILQKA-EFKTRKEAAWAIT 232 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~ 232 (379)
+...++.|.+++.+. +..++..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 224788888888775 5567888988875
No 90
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.05 E-value=7.5e-05 Score=64.80 Aligned_cols=187 Identities=16% Similarity=0.108 Sum_probs=119.1
Q ss_pred cCCChHHHHHHHHHHHHhcCCC--hHHHHHHHhc--CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCc
Q psy664 91 FHADPDVLADACWAISYLSDGP--NEKIQAVIDA--GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSA 166 (379)
Q Consensus 91 ~~~d~~v~~~a~~aL~~l~~~~--~~~~~~~~~~--g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~ 166 (379)
.+.|.+.+..++.-|..+..+. ......+... .++..+...+.+....+...|+.++..++.......+.. -..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5678999999999998887554 2223333221 455677777777788899999999999986544444333 2357
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCc-hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC--HHHH
Q psy664 167 LMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANI-FPSLIEILQKAEFKTRKEAAWAITNATSGGT--PDQI 243 (379)
Q Consensus 167 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~-i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~--~~~~ 243 (379)
+|.|++.+.+++..++..|..++..++...+-. ..+ ++.+...+.+.++.+|..++..+..++.... ....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 899999999988999999999999998754410 122 4566667788899999999999999885444 1111
Q ss_pred HH-HHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 244 RY-LIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 244 ~~-l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
.. ..-..+.+.+...+.+.++++|..+-.++..+....++.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 000235778888999999999999999999888776654
No 91
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.04 E-value=0.00045 Score=60.46 Aligned_cols=237 Identities=15% Similarity=0.128 Sum_probs=145.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCchhhHHHh
Q psy664 85 CLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRAVGNIVTGDDQQTQVIL 162 (379)
Q Consensus 85 ~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~L~nl~~~~~~~~~~~~ 162 (379)
.|-++++.-++-.+.-|..++.++........-.-.+...-.+++++++.. ..+++..++-++.-++.. +...+.+-
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~ 231 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHH
Confidence 333444445566777788888888876543333333445677888888774 578899999999888754 34443221
Q ss_pred h-cCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCC-hHHHHHHHhcCchHHHHHHHHh---CcHHHHHHHHHHHHHHh-
Q psy664 163 N-CSALMCLLHLIQSP-KESIRKEACWAVSNITAGN-RQQIQAVIDANIFPSLIEILQK---AEFKTRKEAAWAITNAT- 235 (379)
Q Consensus 163 ~-~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~~i~~Li~ll~~---~~~~v~~~a~~~l~nl~- 235 (379)
+ ...+.-++++.+.. ..+|.+-+|.++.|.+... ...+....-.|-+.+.++.|.. +|.+++...-..=..+.
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 1 13344455555433 4678888899999987733 3445444433433444454443 24444322111111110
Q ss_pred ----------------c----CC--------CHHHHHHHHHc--CChHHHHHhhccCCHH-HHHHHHHHHHHHHHHcHHh
Q psy664 236 ----------------S----GG--------TPDQIRYLIQQ--GCIEPFCELLTLLDAK-IIQVALNGLENILKLGEEE 284 (379)
Q Consensus 236 ----------------~----~~--------~~~~~~~l~~~--~~i~~L~~lL~~~d~~-v~~~al~~L~~l~~~~~~~ 284 (379)
+ .. -...+..+.+. .++..|..+++.+.+. .+..||.-+..+.+..++
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE- 390 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE- 390 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence 0 00 02334444432 5677788888876654 555667777777776554
Q ss_pred hhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 285 AKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 285 ~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
....+.+.|+-+.|.+|++|++++|+-.|...++.+.+.
T Consensus 391 ---------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 ---------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred ---------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 357899999999999999999999999999998877653
No 92
>KOG4646|consensus
Probab=98.02 E-value=4.3e-05 Score=58.20 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=100.6
Q ss_pred hHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHH
Q psy664 42 LYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV 119 (379)
Q Consensus 42 i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~ 119 (379)
+..|+.-. ..+.+.++.+..-|.|++.++ .........+++..++..|..+|+.+.+-++.+|.|+|.+. .+.+.+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HHHHHH
Confidence 44455444 668888899999999999986 44555566789999999999999999999999999999876 577889
Q ss_pred HhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc
Q psy664 120 IDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC 164 (379)
Q Consensus 120 ~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~ 164 (379)
.+.+++|.++..+.++...+...|+.++..++.+....++.+...
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 999999999999999999999999999999987766666655443
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.00 E-value=0.00099 Score=61.40 Aligned_cols=210 Identities=20% Similarity=0.195 Sum_probs=142.4
Q ss_pred ChHHHHhhcCCCCCCcccCc-hhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHH
Q psy664 11 AVPVFIQLLLSPHEDQVTHP-SVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSR 88 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~~~-~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 88 (379)
.++.+.+++.+++..++... ..-..+-..-.++.+..++ +.+..++..++.+|+.+-. ...++.++.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-----------~~a~~~li~ 112 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGD-----------PEAVPPLVE 112 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-----------hhHHHHHHH
Confidence 56677777777755444411 1111222344677778888 7778888888887776532 236788888
Q ss_pred hhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCCh------------HHHHHHHHHHHHhhcCCc
Q psy664 89 LLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQH------------KVVSAALRAVGNIVTGDD 155 (379)
Q Consensus 89 lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~i~~~al~~L~nl~~~~~ 155 (379)
++. +.+..++..+.++|+.+-... .+..++..++++.. .++..+...++.+-
T Consensus 113 ~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~---- 177 (335)
T COG1413 113 LLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG---- 177 (335)
T ss_pred HHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----
Confidence 888 588999999999999886432 25666677766541 34555666666543
Q ss_pred hhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 156 QQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 156 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
+....+.+...+.+....+|..|..+++.+...+ ..+.+.+...+.+.+..++..++.+++.+-
T Consensus 178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 2345677888898888899999999999986544 345677888888999999999999998852
Q ss_pred cCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHH
Q psy664 236 SGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGL 274 (379)
Q Consensus 236 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 274 (379)
..+ ....++..+...+..+.......+
T Consensus 242 ---~~~---------~~~~l~~~l~~~~~~~~~~~~~~~ 268 (335)
T COG1413 242 ---DEE---------AVDALAKALEDEDVILALLAAAAL 268 (335)
T ss_pred ---cch---------hHHHHHHHHhccchHHHHHHHHHh
Confidence 222 255666677776665555444443
No 94
>KOG1240|consensus
Probab=97.98 E-value=0.0007 Score=68.88 Aligned_cols=257 Identities=17% Similarity=0.141 Sum_probs=163.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCC----ChHHHHHHHhcCcHHH
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDG----PNEKIQAVIDAGVCRR 127 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~i~~ 127 (379)
..+...+|...|..++..- ........++|.++.+++++..+||..|+.+|..+... ++.... ++..-++|.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i---~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan-iF~eYlfP~ 511 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYI---DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN-IFPEYLFPH 511 (1431)
T ss_pred cchhHHHHHHHHHHHhhhc---chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch-hhHhhhhhh
Confidence 4556778888888887653 23345678999999999999999999999988765522 222222 444457888
Q ss_pred HHHhhcC-CChHHHHHHHHHHHHhhc---CCchhhHHHhhc-------------------------CcHHHHHHhhcCCC
Q psy664 128 LVELLMH-DQHKVVSAALRAVGNIVT---GDDQQTQVILNC-------------------------SALMCLLHLIQSPK 178 (379)
Q Consensus 128 L~~lL~~-~~~~i~~~al~~L~nl~~---~~~~~~~~~~~~-------------------------~~l~~L~~lL~~~~ 178 (379)
|-.++.+ ....++..-..+|+.++. .--+..+..-.. ++-.....++..++
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 8888888 444455554555555542 111111111111 12233445666666
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc-CCCHHHHHHHHHcCChHHHHH
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS-GGTPDQIRYLIQQGCIEPFCE 257 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~l~~~~~i~~L~~ 257 (379)
+.||......|.-||.-.-. .--+.=+++.|+..|.+.|..+|..-...|.-++. -|... ++..+++.|..
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs-----~seyllPLl~Q 663 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS-----VSEYLLPLLQQ 663 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee-----HHHHHHHHHHH
Confidence 67777777776666541100 00011367889999999888888776666554322 11111 23345788888
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 258 LLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 258 lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
-|.+.++-|+..|+.+|..+++.+--.+ .-+.++ ++....++-|+|.=|++.++.+|......
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K------~~v~~i------~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRK------PAVKDI------LQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccch------HHHHHH------HHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999998664321 112222 45566789999999999999998866554
No 95
>KOG1824|consensus
Probab=97.98 E-value=0.0007 Score=67.25 Aligned_cols=229 Identities=15% Similarity=0.126 Sum_probs=139.1
Q ss_pred HHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChH-HHHHHHh
Q psy664 44 PLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNE-KIQAVID 121 (379)
Q Consensus 44 ~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~-~~~~~~~ 121 (379)
.|++-+ ++|..++-.|+.=|.+=...+.-..+......++..+.++|.+.+.+|+.-|..+++-|+..-.+ ..+.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~--- 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET--- 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH---
Confidence 456666 77888888777666544444334445556678999999999999999999999999988854322 2222
Q ss_pred cCcHHHHHHhhcCCChHHHH---HHHHH-HHHhhc-CCchhhHHHhhcCcHHHHHHhhcC--CChhhHHHHHHHHHHhhc
Q psy664 122 AGVCRRLVELLMHDQHKVVS---AALRA-VGNIVT-GDDQQTQVILNCSALMCLLHLIQS--PKESIRKEACWAVSNITA 194 (379)
Q Consensus 122 ~g~i~~L~~lL~~~~~~i~~---~al~~-L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~l~nl~~ 194 (379)
.+..|..-+-+...+.+. -++++ ++|+.- .+...+..+. ..++|.+.+.+.. ....++.+++-.+.-+..
T Consensus 86 --~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~-~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 86 --IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVC-KRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHH-HHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 344444444444333332 22222 234431 1111111111 1345555555533 235688888888877543
Q ss_pred CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHH
Q psy664 195 GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNG 273 (379)
Q Consensus 195 ~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~ 273 (379)
......-. ...+++..++..+.+...-+|+.|+.+|+.+...++......+ ++.|.+-|.. ..+...+.-..+
T Consensus 163 r~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~l-----i~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 163 RFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVEL-----IEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred hhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHH-----HHHHHhccCCCCchHHHHHHHHH
Confidence 22221111 3346667777777778889999999999999988877766554 5566666655 334444455677
Q ss_pred HHHHHHHcHHh
Q psy664 274 LENILKLGEEE 284 (379)
Q Consensus 274 L~~l~~~~~~~ 284 (379)
|..++..+...
T Consensus 237 l~~i~r~ag~r 247 (1233)
T KOG1824|consen 237 LAAICRQAGHR 247 (1233)
T ss_pred HHHHHHHhcch
Confidence 77787766554
No 96
>KOG0212|consensus
Probab=97.98 E-value=0.00031 Score=65.89 Aligned_cols=309 Identities=13% Similarity=0.073 Sum_probs=188.0
Q ss_pred CCChHHHHhhcCCCCCCccc---------CchhHHHHH--hCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCC-CCCC
Q psy664 9 AGAVPVFIQLLLSPHEDQVT---------HPSVETMSL--DNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKT-PPPD 75 (379)
Q Consensus 9 ~g~i~~L~~lL~s~~~~v~~---------~~~~r~~i~--~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~-~~~~ 75 (379)
.+.+|+.+..++.++..++- .+.+|..++ -..+...+.++. +++. ..+.++..+-.+-.+-. +...
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~-~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ-NVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHhcccccc
Confidence 45678888888887777776 122222221 122233344444 3333 33455555555544321 1122
Q ss_pred hHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC--
Q psy664 76 FAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG-- 153 (379)
Q Consensus 76 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~-- 153 (379)
.....+++|.|-.-+...++..|......+.-|-..++-. ..-.-..+++-|+..|.+++++++..+=.+++++...
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~-m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLE-MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHH-HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 4456788888888888889999999888888776665421 1112236788889999999999998777777766532
Q ss_pred -CchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHH
Q psy664 154 -DDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAIT 232 (379)
Q Consensus 154 -~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~ 232 (379)
++.. +--...++.++.-++++++.++..|..-|.-+..-.+...- ..-+|++..+..++.+.+..-.+++...+.
T Consensus 241 s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 241 SSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred cCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 2211 11235678899999999999998887666665543333222 223477777777777776653444444333
Q ss_pred HHhcC--CCHHHHHHHHH-cCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHH
Q psy664 233 NATSG--GTPDQIRYLIQ-QGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEF 309 (379)
Q Consensus 233 nl~~~--~~~~~~~~l~~-~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~ 309 (379)
+.+.. .+...... ++ -.+++-+...+.++..+.+..++.-+..+....+.. ...........|..
T Consensus 317 ~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-----------l~~h~~~if~tLL~ 384 (675)
T KOG0212|consen 317 GLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-----------LLVHNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-----------hhhhccHHHHHHHH
Confidence 22211 11111111 11 134666777788877888888888888887765533 12223334566667
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCcc
Q psy664 310 LQSHENIEIYQKAFDIIEHYFGSEEE 335 (379)
Q Consensus 310 l~~~~~~~v~~~a~~il~~~~~~~~~ 335 (379)
-+.+.+.+|..++..++..+..+..+
T Consensus 385 tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 385 TLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hhcCchhHHHHHHHHHHHHHhcCccc
Confidence 77778888999999999999887654
No 97
>PF05536 Neurochondrin: Neurochondrin
Probab=97.97 E-value=0.0014 Score=64.03 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=160.0
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChH---HHHHHHhcCcHHHHHHhhcC-------CChHHHHHHHHHHHHh
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNE---KIQAVIDAGVCRRLVELLMH-------DQHKVVSAALRAVGNI 150 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~---~~~~~~~~g~i~~L~~lL~~-------~~~~i~~~al~~L~nl 150 (379)
..+....++|+..+.+-+-.++..+.++..+.+. ..+.+.+.=+.+-+-++|++ +....+.-|+.+|+.+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4567788899988877778888888899877653 23356776556777777876 3466788899999999
Q ss_pred hcCCchhh--HHHhhcCcHHHHHHhhcCCCh-hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHH
Q psy664 151 VTGDDQQT--QVILNCSALMCLLHLIQSPKE-SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227 (379)
Q Consensus 151 ~~~~~~~~--~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a 227 (379)
++. ++.. ..+. +-+|.|+..+.+.+. .+...|+.+|..++ ..++..+.+++.|.++.|++.+.+ .+.....|
T Consensus 85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHH
Confidence 873 3332 2232 568999999988776 99999999999997 778889999999999999999988 56778889
Q ss_pred HHHHHHHhcCCCHHHHHHH--HHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHH
Q psy664 228 AWAITNATSGGTPDQIRYL--IQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLD 305 (379)
Q Consensus 228 ~~~l~nl~~~~~~~~~~~l--~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~ 305 (379)
+.++.+++.....+....- .=..++..+...+.......+-..+..|..++...+.........+.....+ ..
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l-----~~ 234 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL-----RK 234 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH-----HH
Confidence 9999998864442221100 0013355566666554455566678888888876631100000011111112 22
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHhcCC
Q psy664 306 KIEFLQS-HENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 306 ~l~~l~~-~~~~~v~~~a~~il~~~~~~ 332 (379)
-|..++. ...+.-+..|..+...+.+-
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2334443 44566666666666655543
No 98
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.97 E-value=0.001 Score=61.31 Aligned_cols=185 Identities=27% Similarity=0.290 Sum_probs=136.9
Q ss_pred CChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 40 NILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 40 g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
..++.+++.+ +.+..++..+++.+..+.. ..++|.+..++.+.++.++..+..+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGDP------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-------
Confidence 3677888888 6678888899988665432 34899999999999999999999988876422
Q ss_pred HHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCCh------------hhHHHH
Q psy664 119 VIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKE------------SIRKEA 185 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------------~v~~~a 185 (379)
..++.++.++. +++..++..+.++|+.+-.. ..+..++..+.+... .++..+
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 24677888888 58999999999999987532 225556666665441 355566
Q ss_pred HHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHH
Q psy664 186 CWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAK 265 (379)
Q Consensus 186 ~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~ 265 (379)
...++.+- +...++.+...+...+..++..|..+++.+.. .. ..+...+...+.+.+..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~-~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGS-EN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhc-ch---------hhHHHHHHHHhcCCCHH
Confidence 66655542 22467788888999888999999999999752 22 23456777788888889
Q ss_pred HHHHHHHHHHHHH
Q psy664 266 IIQVALNGLENIL 278 (379)
Q Consensus 266 v~~~al~~L~~l~ 278 (379)
++..++.+++.+-
T Consensus 229 vr~~~~~~l~~~~ 241 (335)
T COG1413 229 VRKAALLALGEIG 241 (335)
T ss_pred HHHHHHHHhcccC
Confidence 9888888877653
No 99
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.97 E-value=2.3e-05 Score=51.17 Aligned_cols=55 Identities=35% Similarity=0.497 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q psy664 95 PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNI 150 (379)
Q Consensus 95 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl 150 (379)
+.++..|+|+|++++...++..+. ....+++.|+.+|+++++.++..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999999877666554 4467999999999999999999999999975
No 100
>KOG0212|consensus
Probab=97.94 E-value=0.00079 Score=63.27 Aligned_cols=263 Identities=16% Similarity=0.093 Sum_probs=163.9
Q ss_pred ChHHHHhhcCCCCCCcccCchhHHH-----HHhCC---ChHHHHhcC-----CCChhHHHHHHHHHHHHhCCCCCCCChH
Q psy664 11 AVPVFIQLLLSPHEDQVTHPSVETM-----SLDNN---ILYPLIDKP-----KNRLSMVRNSVWVLSNLCRGKTPPPDFA 77 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~~~~~r~~-----i~~~g---~i~~Ll~lL-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 77 (379)
+...+.++...++..++...+..+. +.+.. -++.++.+| ..++..+.-...-|..|-.. |...++
T Consensus 126 iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~ 203 (675)
T KOG0212|consen 126 IFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMI 203 (675)
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHH
Confidence 3456667777777777774444333 33322 466666666 44666666443334444332 333333
Q ss_pred -hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc----CCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 78 -KVAPALACLSRLLFHADPDVLADACWAISYLS----DGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 78 -~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~----~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
....+++.|.++|.++.++++..+=.+++..- +.+. .. --...++.++.-+.++++.++..|+.-+..+..
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~-s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS-SM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc-cc---CcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 23578899999999999999977766665433 2221 11 112567888888999999999999888887775
Q ss_pred CCchhhHHHhhcCcHHHHHHhhcCCCh-hhHHHHHHHHHHhhc--CChHHHHHHHhc-CchHHHHHHHHhCcHHHHHHHH
Q psy664 153 GDDQQTQVILNCSALMCLLHLIQSPKE-SIRKEACWAVSNITA--GNRQQIQAVIDA-NIFPSLIEILQKAEFKTRKEAA 228 (379)
Q Consensus 153 ~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~l~nl~~--~~~~~~~~~~~~-~~i~~Li~ll~~~~~~v~~~a~ 228 (379)
-.+.. -...-.|++..+...+.+... .++..+...-+.+.. +.+...+. ++. .++..+-+.+.+...++|..++
T Consensus 280 i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L 357 (675)
T KOG0212|consen 280 IPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVL 357 (675)
T ss_pred CCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHH
Confidence 43222 123335666777777766655 344444433222221 11111111 333 3677777888888889999998
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHH
Q psy664 229 WAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 229 ~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 283 (379)
.-+..+. ...+.+.. ...+.+...|..-|.+.+.+++..++..+.+++...+.
T Consensus 358 ~Wi~~l~-~~~p~ql~-~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 358 NWIILLY-HKAPGQLL-VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHH-hhCcchhh-hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 8888876 33333322 22356788888889999999999999999999986554
No 101
>KOG1061|consensus
Probab=97.92 E-value=0.00029 Score=68.52 Aligned_cols=260 Identities=17% Similarity=0.143 Sum_probs=156.0
Q ss_pred ChHHHHhhcCCCCCCccc---------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHh
Q psy664 11 AVPVFIQLLLSPHEDQVT---------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA 80 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~---------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 80 (379)
+..++.+.+++.++-++. .....+.+...|.++.|-.++ ++++.+..+|..+|..+...+..........
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~ 201 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNP 201 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccH
Confidence 456677777777776666 334456788999999999999 8899999999999999988764333333444
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
..+..++..+...++=-+...+.++.+-.-.++.... .++.++...|.|.+..+...+...+-+..........
T Consensus 202 ~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~- 275 (734)
T KOG1061|consen 202 QLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE- 275 (734)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-
Confidence 4555555554433333333333334333322221111 3567788888888888887788877777654333222
Q ss_pred HhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHH-------------------------HH-hcC---chHH
Q psy664 161 ILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQA-------------------------VI-DAN---IFPS 211 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~-------------------------~~-~~~---~i~~ 211 (379)
..-...-+.+..++...+ +++.-|+.=+.-+....++.... +. +++ ++..
T Consensus 276 ~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~E 354 (734)
T KOG1061|consen 276 LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAE 354 (734)
T ss_pred HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHH
Confidence 222334455555555544 44444443333332222221110 00 111 2222
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 212 LIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 212 Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
+...-..-|.+..++++++++++....... ++++..|.+++..+-..+...+...+..++...++.
T Consensus 355 l~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 355 LKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 333333347888999999999985322111 578999999999877777777788888888877655
No 102
>KOG4646|consensus
Probab=97.91 E-value=0.00044 Score=52.83 Aligned_cols=124 Identities=13% Similarity=0.169 Sum_probs=103.2
Q ss_pred hhhHHHHHHhh-cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q psy664 80 APALACLSRLL-FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 80 ~~~l~~L~~lL-~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
.+-+..|+.-. ...+.+.+++...-|.|.+.++. +...+.+..+++.++..|..++..+.+.++..|+|+|.+ ....
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~-Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPI-NYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcc-hHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHH
Confidence 34555565433 35688999999999999998875 556688889999999999999999999999999999964 4667
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 205 (379)
+.+.+.+.+|.++..+.++...+...|+.++..++-+.......+..
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 78889999999999999999899999999999998777666665554
No 103
>KOG1077|consensus
Probab=97.88 E-value=0.0025 Score=61.57 Aligned_cols=257 Identities=17% Similarity=0.135 Sum_probs=154.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVEL 131 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l 131 (379)
.+-++..++-+|..|-+.. ++.+...+-...++.+|.+.+..+...+...+-.|+...++.....+- -.+..|..+
T Consensus 161 ~~~vkqkaALclL~L~r~s---pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~ri 236 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKS---PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRI 236 (938)
T ss_pred hHHHHHHHHHHHHHHHhcC---ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHH
Confidence 3556667888888888764 344444566788999999988888888888888888665554432221 123333333
Q ss_pred hc-------------CCChHHHHHHHHHHHHhhcCCchhhH-HHhhcCcHHHHHHhhcCC----C---hhhHHHHHHHHH
Q psy664 132 LM-------------HDQHKVVSAALRAVGNIVTGDDQQTQ-VILNCSALMCLLHLIQSP----K---ESIRKEACWAVS 190 (379)
Q Consensus 132 L~-------------~~~~~i~~~al~~L~nl~~~~~~~~~-~~~~~~~l~~L~~lL~~~----~---~~v~~~a~~~l~ 190 (379)
.. -+.|.++...++.|.++-...+.-.. .+. ..+..++...+.+ + ...+...++-.-
T Consensus 237 v~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI 314 (938)
T KOG1077|consen 237 VVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (938)
T ss_pred HhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHH
Confidence 22 24688899999999887543333222 221 2334444443321 1 122333333334
Q ss_pred HhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc-cCCHHHHHH
Q psy664 191 NITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT-LLDAKIIQV 269 (379)
Q Consensus 191 nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~d~~v~~~ 269 (379)
+++.+.+..-..+. ..+..|.+++.+.+..+|.-|+..++.+++... ....+..+ .+.++..|+ ..|..+++.
T Consensus 315 ~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h--~d~Ii~sLkterDvSirrr 388 (938)
T KOG1077|consen 315 SLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKH--QDTIINSLKTERDVSIRRR 388 (938)
T ss_pred HHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHH--HHHHHHHhccccchHHHHH
Confidence 44433222222222 456788889999999999999999999986533 23334333 778888888 689999999
Q ss_pred HHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 270 ALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 270 al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
+++.|+.+++..... +++.+. ++.|+..-.+--+++..++.-+-++|..|.
T Consensus 389 avDLLY~mcD~~Nak-----------~IV~el--LqYL~tAd~sireeivlKvAILaEKyAtDy 439 (938)
T KOG1077|consen 389 AVDLLYAMCDVSNAK-----------QIVAEL--LQYLETADYSIREEIVLKVAILAEKYATDY 439 (938)
T ss_pred HHHHHHHHhchhhHH-----------HHHHHH--HHHHhhcchHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999865432 233111 233322222223455556666666776655
No 104
>KOG1077|consensus
Probab=97.85 E-value=0.0018 Score=62.48 Aligned_cols=256 Identities=12% Similarity=0.145 Sum_probs=151.9
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHAD--PDVLADACWAISYLSDGPNEKIQAVIDAGVCRR 127 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~ 127 (379)
+.++....-|.-+++|+...+. ....-+-+-++|.+.+ +-++..|+.+|..|-...++.. -..+...+
T Consensus 122 srn~~fv~LAL~~I~niG~re~-------~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~r 191 (938)
T KOG1077|consen 122 SRNPTFVCLALHCIANIGSREM-------AEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQR 191 (938)
T ss_pred cCCcHHHHHHHHHHHhhccHhH-------HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHH
Confidence 6677777788888888765431 1112223336666654 6788888888888887665432 23367899
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc-------------CCChhhHHHHHHHHHHhhc
Q psy664 128 LVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ-------------SPKESIRKEACWAVSNITA 194 (379)
Q Consensus 128 L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-------------~~~~~v~~~a~~~l~nl~~ 194 (379)
++++|++.+-.+...+...+--|+...++.....+- -.+..|.++.. -+.+.+...+++++.+.-.
T Consensus 192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~ 270 (938)
T KOG1077|consen 192 IVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT 270 (938)
T ss_pred HHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC
Confidence 999999988888888888888888765544331110 11222222211 1357778888888877622
Q ss_pred -CChHHHHHHHhcCchHHHHHHHHhC----c---HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHH
Q psy664 195 -GNRQQIQAVIDANIFPSLIEILQKA----E---FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266 (379)
Q Consensus 195 -~~~~~~~~~~~~~~i~~Li~ll~~~----~---~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 266 (379)
.++.....+. .++..++...+.. + ...+...+.-..+++..-+++ -..+. ..+..|.++|.+.+..+
T Consensus 271 ~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e-~~ll~--~~~~~Lg~fls~rE~Ni 345 (938)
T KOG1077|consen 271 PEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSE-PELLS--RAVNQLGQFLSHRETNI 345 (938)
T ss_pred CCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCc-HHHHH--HHHHHHHHHhhcccccc
Confidence 1111111111 2233333222210 1 112222222223333222221 11222 24788999999999999
Q ss_pred HHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCc
Q psy664 267 IQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS-HENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 267 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~-~~~~~v~~~a~~il~~~~~~~~ 334 (379)
|.-+++.++.++..... .+.+... .+.+...+. .++..|+++|.++|..+++.+.
T Consensus 346 RYLaLEsm~~L~ss~~s-----------~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 346 RYLALESMCKLASSEFS-----------IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred hhhhHHHHHHHHhccch-----------HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence 99999999999875332 3444444 566666665 8899999999999998887654
No 105
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.0033 Score=59.41 Aligned_cols=227 Identities=14% Similarity=0.023 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHH----------
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV---------- 119 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~---------- 119 (379)
.++.+++..+..||..+..-.-...+....+-......+.++++++++..++..--+.++...-+..-..
T Consensus 232 ~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn 311 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQN 311 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhh
Confidence 5678888889888888765432233333444445556678889999999888876666664321111100
Q ss_pred ------HhcCcHHHHHHhhcC-------CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHH
Q psy664 120 ------IDAGVCRRLVELLMH-------DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186 (379)
Q Consensus 120 ------~~~g~i~~L~~lL~~-------~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 186 (379)
.-.+++|.|+++|.. ++.++.-.|-.||.-++... .+.+++. ++..+-+-+++++..-|+.|.
T Consensus 312 ~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~FvEqni~~~~w~nreaav 387 (858)
T COG5215 312 HGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGFVEQNIRSESWANREAAV 387 (858)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHHHHHhccCchhhhHHHHH
Confidence 112478999999875 24555666666666554321 1222222 555566677888888999999
Q ss_pred HHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhh---ccCC
Q psy664 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL---TLLD 263 (379)
Q Consensus 187 ~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL---~~~d 263 (379)
.+++.+..+..+....-+-+..+|.+...+.+....++..++|+++.+. .+-++.+. .+|-+...++-. -.+.
T Consensus 388 mAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~ia-d~va~~i~---p~~Hl~~~vsa~liGl~D~ 463 (858)
T COG5215 388 MAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIA-DHVAMIIS---PCGHLVLEVSASLIGLMDC 463 (858)
T ss_pred HHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHH-HHHHHhcC---ccccccHHHHHHHhhhhcc
Confidence 9999987776655554444578899999988878889999999999985 22122111 122222222211 1134
Q ss_pred HHHHHHHHHHHHHHHHHcHHh
Q psy664 264 AKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 264 ~~v~~~al~~L~~l~~~~~~~ 284 (379)
+.+..++.|...|+..+-.+.
T Consensus 464 p~~~~ncsw~~~nlv~h~a~a 484 (858)
T COG5215 464 PFRSINCSWRKENLVDHIAKA 484 (858)
T ss_pred chHHhhhHHHHHhHHHhhhhh
Confidence 678888999999998876554
No 106
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.77 E-value=0.006 Score=55.56 Aligned_cols=207 Identities=12% Similarity=0.082 Sum_probs=146.6
Q ss_pred HHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh-----hHHHhh--cCcHHHHHHhhcCCChhhHHHHHHH
Q psy664 116 IQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ-----TQVILN--CSALMCLLHLIQSPKESIRKEACWA 188 (379)
Q Consensus 116 ~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~-----~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~ 188 (379)
.+.++..+.+..|+..|..-+-+.+..+..+.+++....... .+.+.. ..++..|+....+ +++-..+-..
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~--~dial~~g~m 146 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN--PDIALNCGDM 146 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS--TTTHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC--ccccchHHHH
Confidence 345677799999999999988889999999999998653322 223322 2455555555554 3444444444
Q ss_pred HHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--CChHHHHHhhccCCHHH
Q psy664 189 VSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQ--GCIEPFCELLTLLDAKI 266 (379)
Q Consensus 189 l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~--~~i~~L~~lL~~~d~~v 266 (379)
+.. |...+.....++....+..+.+.++.+..++...|..++..+...+..-...++..+ ..+..+..+|.+++.-+
T Consensus 147 lRe-c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 147 LRE-CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHH-HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHH-HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 444 445667778888888999999999999999999999999998855443333344332 55667888899999999
Q ss_pred HHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 267 IQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 267 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
++.++..|+.++....+.. .....+.+..-+..+..|+.+++..|+-.|+.+..-|...
T Consensus 226 krqslkLL~ellldr~n~~-------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFN-------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHH-------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred ehhhHHHHHHHHHchhHHH-------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999999999997655432 1235666677788889999999999999999999766544
No 107
>KOG2973|consensus
Probab=97.76 E-value=0.0067 Score=53.15 Aligned_cols=259 Identities=15% Similarity=0.114 Sum_probs=146.5
Q ss_pred HHHHhhcCCCCCCccc-------Cchh-HHHHH---hCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHh
Q psy664 13 PVFIQLLLSPHEDQVT-------HPSV-ETMSL---DNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA 80 (379)
Q Consensus 13 ~~L~~lL~s~~~~v~~-------~~~~-r~~i~---~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 80 (379)
-.++.+|.+.++.++. +-.. --... +.-.++.+.+++ ..+. .+.|+.++.|++... ........
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHH
Confidence 3577888888776655 0000 01111 122455666777 3333 678999999999875 22223333
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHh------cCcHHHHHHhhcCCCh--HHHHHHHHHHHHhhc
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID------AGVCRRLVELLMHDQH--KVVSAALRAVGNIVT 152 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~------~g~i~~L~~lL~~~~~--~i~~~al~~L~nl~~ 152 (379)
..+..++..+-++...+-...|..|+|++..++........ .|.+.......+++-. .-.....-+++|++.
T Consensus 82 ~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 82 DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 36666666666666778888899999999887654433322 2344444444444311 112334556666665
Q ss_pred CCchhhHHHhhcCcHH--HHHHhhcCCChhhH-HHHHHHHHHhhcCChHHHHHHH-hcCchHHHHH--------------
Q psy664 153 GDDQQTQVILNCSALM--CLLHLIQSPKESIR-KEACWAVSNITAGNRQQIQAVI-DANIFPSLIE-------------- 214 (379)
Q Consensus 153 ~~~~~~~~~~~~~~l~--~L~~lL~~~~~~v~-~~a~~~l~nl~~~~~~~~~~~~-~~~~i~~Li~-------------- 214 (379)
.. .-+..+.+...+| .+..+-. .+..+| .-.+.+|.|.|-....+-..+- ..+++|.+.-
T Consensus 162 ~~-~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~ 239 (353)
T KOG2973|consen 162 FE-AGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA 239 (353)
T ss_pred hh-hhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence 33 3334444443222 2222223 445554 4566777887654433322221 1134443332
Q ss_pred -------HHH-----hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHH
Q psy664 215 -------ILQ-----KAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILK 279 (379)
Q Consensus 215 -------ll~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~ 279 (379)
++. ..|+.+++.-+-+|.-+|+ +....+.+.+.|+.+.+-.+=.+ +|+++++.+......+..
T Consensus 240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca--T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA--TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh--hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 221 1468899999999999875 56777888888988887777655 567777766554444443
No 108
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.75 E-value=5.7e-05 Score=45.84 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=35.3
Q ss_pred chhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 30 PSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 30 ~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
++.+..+++.|+++.|++++ +.+..+++.++|+|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45788899999999999999 8899999999999999974
No 109
>KOG1789|consensus
Probab=97.74 E-value=0.0025 Score=64.28 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=158.0
Q ss_pred CChHHHHhhcCCC-CCCccc-----------CchhHHHHHhCCChHHHHhcCCCChhHHHHHHHHHHHHhCCCCCCCChH
Q psy664 10 GAVPVFIQLLLSP-HEDQVT-----------HPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLSNLCRGKTPPPDFA 77 (379)
Q Consensus 10 g~i~~L~~lL~s~-~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 77 (379)
|..+.+..+|.+. +..++. ..+|-..+...|.+..|+.+|.+-++.+..+.-+|..|++.. .-....
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~-~i~keA 1849 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQPSMRARVLDVLYALSSNG-QIGKEA 1849 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHhcCc-HHHHHH
Confidence 4455556566543 334444 678888999999999999999667778888888888888875 222333
Q ss_pred hHhhhHHHHHHh-hcCCChHHHHHHHHHHHHhcCCChHHHH---HHHh---c-------CcHHHHHHhhcCC--ChHH--
Q psy664 78 KVAPALACLSRL-LFHADPDVLADACWAISYLSDGPNEKIQ---AVID---A-------GVCRRLVELLMHD--QHKV-- 139 (379)
Q Consensus 78 ~~~~~l~~L~~l-L~~~d~~v~~~a~~aL~~l~~~~~~~~~---~~~~---~-------g~i~~L~~lL~~~--~~~i-- 139 (379)
...|++..+..+ ..++.++.+.+++..++.+..++-..-+ .+++ . +.-+..++.++.. ++++
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiW 1929 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIW 1929 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccccc
Confidence 344555555544 4566789999999999988754211000 0000 0 1112223333210 1000
Q ss_pred ----H---------------------------------------------------------------------------
Q psy664 140 ----V--------------------------------------------------------------------------- 140 (379)
Q Consensus 140 ----~--------------------------------------------------------------------------- 140 (379)
+
T Consensus 1930 n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~l 2009 (2235)
T KOG1789|consen 1930 NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVL 2009 (2235)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHH
Confidence 0
Q ss_pred -------------HHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcC
Q psy664 141 -------------SAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDAN 207 (379)
Q Consensus 141 -------------~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~ 207 (379)
.---.++-.+....+...+.+-..|.+|.++..+...+..+-+.|.+++-.++ .+.-+.+++....
T Consensus 2010 elm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Ls-en~~C~~AMA~l~ 2088 (2235)
T KOG1789|consen 2010 ELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELS-ENQFCCDAMAQLP 2088 (2235)
T ss_pred HHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHh-hccHHHHHHhccc
Confidence 00011111122223333344445588888888888877778899999999985 4556677777777
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC
Q psy664 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL 262 (379)
Q Consensus 208 ~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 262 (379)
.+..++..++.. +....-|+.+|-.+......+-.....+.|.++.|..+|+..
T Consensus 2089 ~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2089 CIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred cchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 777788887764 345557888888888666667777788899999999999863
No 110
>KOG1789|consensus
Probab=97.72 E-value=0.012 Score=59.51 Aligned_cols=260 Identities=12% Similarity=0.100 Sum_probs=175.2
Q ss_pred CCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHH
Q psy664 39 NNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKI 116 (379)
Q Consensus 39 ~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~ 116 (379)
-|.++-+...| ..+..++..+..++..+.... +....+...+.+..|+.+|++ -+..+..++..|..|++.. +..
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~-~i~ 1846 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNG-QIG 1846 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCc-HHH
Confidence 45566666666 667778888888888777765 666667777888999999875 5788899999999999886 566
Q ss_pred HHHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCc-------------------------hhhHHH---------
Q psy664 117 QAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVTGDD-------------------------QQTQVI--------- 161 (379)
Q Consensus 117 ~~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~~~~-------------------------~~~~~~--------- 161 (379)
....+.|++..+..++- ++.++.+..|...++.+....- +..-.+
T Consensus 1847 keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPE 1926 (2235)
T KOG1789|consen 1847 KEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPE 1926 (2235)
T ss_pred HHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcc
Confidence 66777888888887754 4677888888888888765210 000000
Q ss_pred -------------------------------------------------------------h------------hcCcHH
Q psy664 162 -------------------------------------------------------------L------------NCSALM 168 (379)
Q Consensus 162 -------------------------------------------------------------~------------~~~~l~ 168 (379)
. -.+++.
T Consensus 1927 LiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLe 2006 (2235)
T KOG1789|consen 1927 LIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLE 2006 (2235)
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHH
Confidence 0 001223
Q ss_pred HHHHhhcCCC--hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy664 169 CLLHLIQSPK--ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYL 246 (379)
Q Consensus 169 ~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l 246 (379)
.+..+|...+ .....-...++..+....|...+.+-.-|.+|.++..+......+-+.|+.+|-.+. .+.-....|
T Consensus 2007 k~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Ls--en~~C~~AM 2084 (2235)
T KOG1789|consen 2007 KVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELS--ENQFCCDAM 2084 (2235)
T ss_pred HHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHh--hccHHHHHH
Confidence 3333443322 222223333334444555665666666699999999988776667788999998874 466677788
Q ss_pred HHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcC
Q psy664 247 IQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH 313 (379)
Q Consensus 247 ~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~ 313 (379)
.....+..++..|.. .+....-|+.+|.+++....+. ..++.+ ++|.++.|..|++.
T Consensus 2085 A~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~e--------LVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGE--------LVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred hccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHH--------HHHHHh-ccCcHHHHHHHhcc
Confidence 888888888888876 3455668899999999855432 233333 78888888887743
No 111
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.0062 Score=60.55 Aligned_cols=164 Identities=10% Similarity=0.114 Sum_probs=128.2
Q ss_pred CCChhHHHHHH-HHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHH
Q psy664 50 KNRLSMVRNSV-WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRL 128 (379)
Q Consensus 50 ~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 128 (379)
+.+...+..|+ .+++.+..+++ +....|-+++.+.+.|.+++.-.-.-+.+.+...++.. +. ++..+
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avNti 97 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVNTI 97 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHHHH
Confidence 55555555444 67788888863 55678888888888899999888888888887766332 22 46778
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCc
Q psy664 129 VELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANI 208 (379)
Q Consensus 129 ~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~ 208 (379)
.+=++++++.+|-.|+++++.+= .++.. ..+++.+.+++.++++.||+.|+.++.++-.-+++. .-+.|.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~--~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~ 167 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLR--VKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGL 167 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcC--hHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccH
Confidence 88899999999999999999663 22222 246788999999999999999999999986555543 335688
Q ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 209 FPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 209 i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
+..+..++.+.||.+..+|+.++..+.
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 899999999999999999999999974
No 112
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.70 E-value=0.00097 Score=48.95 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhcc
Q psy664 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYG 303 (379)
Q Consensus 224 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~ 303 (379)
|+.++++|+.++.+-... +.... ..++++++..+.++|.+||..++.+|+++++...... ...+ ...
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~---------l~~f--~~I 69 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI---------LPYF--NEI 69 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH---------HHHH--HHH
Confidence 566777777765333333 22222 3469999999999999999999999999998765431 1122 223
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 304 LDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 304 l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
++.|.++..+++++|+..| .+|+++..
T Consensus 70 F~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 70 FDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 6888999999999998877 66666553
No 113
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.69 E-value=0.00038 Score=51.11 Aligned_cols=95 Identities=19% Similarity=0.333 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc
Q psy664 181 IRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT 260 (379)
Q Consensus 181 v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 260 (379)
.|+-+.+++..++.+-+..+...++ .++++++..+.+.|.+||..|+.+|.|++.....+....+ ..+++.|+.++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc
Confidence 3667778888876666555555444 6899999999999999999999999999854433333333 356888999999
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q psy664 261 LLDAKIIQVALNGLENILK 279 (379)
Q Consensus 261 ~~d~~v~~~al~~L~~l~~ 279 (379)
+.|+.|+..| +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999988765 67777653
No 114
>KOG1061|consensus
Probab=97.67 E-value=0.0016 Score=63.60 Aligned_cols=196 Identities=22% Similarity=0.153 Sum_probs=125.6
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
...+...+.++++++++-++..+.-+..++-..+ .+.+.+.|+++.|-.++.++++.+...|+.+|..|...++...
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 4456777888899999999999998888887654 3557788999999999999999999999999999987654322
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
...+....+..++..+...+..-+.....++.+-...+....+ .++..+...+.+....+.-.+..++.+++...
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 2222233444455555444444444444444443222221222 24455556666666666666677776665322
Q ss_pred CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhh
Q psy664 239 TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285 (379)
Q Consensus 239 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~ 285 (379)
.. .....-..+-++++.+++... +++..++.=+.-++...++..
T Consensus 271 ~~--~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~ 314 (734)
T KOG1061|consen 271 KQ--VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEIL 314 (734)
T ss_pred HH--HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHH
Confidence 22 223333456677777777655 777777777776666666543
No 115
>KOG4151|consensus
Probab=97.64 E-value=0.00069 Score=66.29 Aligned_cols=248 Identities=11% Similarity=0.022 Sum_probs=167.0
Q ss_pred hhhhCCChHHHHhhcCCCCCCccc-----CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHh
Q psy664 5 MVIDAGAVPVFIQLLLSPHEDQVT-----HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAK 78 (379)
Q Consensus 5 ~~~~~g~i~~L~~lL~s~~~~v~~-----~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 78 (379)
..+..|..|......+.......+ ...-|...++-|+...|+++. .....-......+|. +.-+ .....
T Consensus 464 k~~~~~~~~~~~svakt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~--~~i~---f~~~~ 538 (748)
T KOG4151|consen 464 KRLSLDEDPSCESVAKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALA--GKID---FPGER 538 (748)
T ss_pred HhhccCcchhhhHHHHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHh--hhcC---CCCCc
Confidence 345555556555555443322222 344566788999999999998 556566666666666 1111 11112
Q ss_pred HhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh
Q psy664 79 VAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~ 157 (379)
....++.+...++... ..-...++.++.||++.+...++.+++...++.+-.++..+++-.++.++..+.|+.-+..-+
T Consensus 539 ~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~ 618 (748)
T KOG4151|consen 539 SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLY 618 (748)
T ss_pred hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHH
Confidence 2345566666555432 233467888999999988888888888888888888888899999999999999999877666
Q ss_pred hHHHhh-cCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHH-HHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 158 TQVILN-CSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQ-AVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 158 ~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
...+.+ ...++.....+.........+++.++.-|+.-...++. ..-.......+..++.+.++.++...+..++|+.
T Consensus 619 e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 619 ERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred HHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence 666666 45566666666666667777777777766554444444 2223356777888899999999999999999954
Q ss_pred cCCCHHHHHHHHHcCChHHHHHh
Q psy664 236 SGGTPDQIRYLIQQGCIEPFCEL 258 (379)
Q Consensus 236 ~~~~~~~~~~l~~~~~i~~L~~l 258 (379)
....+....+.+...++.+..+
T Consensus 699 -~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 699 -EALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred -HHHHHHHHHhccchHHHHHHHH
Confidence 6666666666665555555444
No 116
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.011 Score=58.77 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=104.0
Q ss_pred HHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcC
Q psy664 45 LIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAG 123 (379)
Q Consensus 45 Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g 123 (379)
+++.. +.|.++.+..-.=|.+.+..+ | ....-+++.+.+=++++|+.+|..|+++++.+-.. + +.. -
T Consensus 60 ViK~~~trd~ElKrL~ylYl~~yak~~-P----~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~--e----l~~-~ 127 (757)
T COG5096 60 VIKNVATRDVELKRLLYLYLERYAKLK-P----ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVK--E----LLG-N 127 (757)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhccC-H----HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChH--H----HHH-H
Confidence 33444 677888887766666776665 2 22334677888888899999999999999877422 1 222 3
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA 194 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 194 (379)
+++.+.+++.++++.++..|.-++.++..-+... ..+.|....+..++.+.++.+...|..++..+..
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 6789999999999999999999999998655433 4467888899999999999999999999998843
No 117
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.63 E-value=0.039 Score=52.78 Aligned_cols=269 Identities=15% Similarity=0.054 Sum_probs=167.8
Q ss_pred HHHHHHHhCCCCCCCChHhHhhhHHHHHHhh----------cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH
Q psy664 60 VWVLSNLCRGKTPPPDFAKVAPALACLSRLL----------FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129 (379)
Q Consensus 60 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----------~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 129 (379)
..+|..+++++ .....+.....+..|.++- ...++.+...|+.+|+|+...++..++.+.+.|..+.++
T Consensus 2 L~~LRiLsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 34566777776 3455555566677777665 345689999999999999999999999999999999999
Q ss_pred HhhcCC-----ChHHHHHHHHHHHHhhcCCchhhHHHh-hcCcHHHHHHhhcC-----------------CChhhHHHHH
Q psy664 130 ELLMHD-----QHKVVSAALRAVGNIVTGDDQQTQVIL-NCSALMCLLHLIQS-----------------PKESIRKEAC 186 (379)
Q Consensus 130 ~lL~~~-----~~~i~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~-----------------~~~~v~~~a~ 186 (379)
+.|+.. +.++.....++|--++.........++ +.+++..+...|.. .+.....+++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 677888888888777766656555444 44777777665521 1345578888
Q ss_pred HHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC---------cHHHHHHHHHHHHHHhcCCCHHHH-----------HHH
Q psy664 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKA---------EFKTRKEAAWAITNATSGGTPDQI-----------RYL 246 (379)
Q Consensus 187 ~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~---------~~~v~~~a~~~l~nl~~~~~~~~~-----------~~l 246 (379)
.++-|++...+.... -.....++.++.++.+- -......++.+|.|+- -...... ...
T Consensus 161 KllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp-l~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 161 KLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP-LECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC-hHHHhhhhcccCCcccccCCC
Confidence 999998765544332 01223344444433221 2456777888888762 1111110 001
Q ss_pred HHcCChHHHHHhhcc-----C---CHHHHHHHHHHHHHHHHHcHHhhhhc-----CCcchHHHHHH-HhccHHHHHHhhc
Q psy664 247 IQQGCIEPFCELLTL-----L---DAKIIQVALNGLENILKLGEEEAKQT-----GSVNPYVVLIE-ECYGLDKIEFLQS 312 (379)
Q Consensus 247 ~~~~~i~~L~~lL~~-----~---d~~v~~~al~~L~~l~~~~~~~~~~~-----~~~~~~~~~i~-~~g~l~~l~~l~~ 312 (379)
.....+..|+++|+. . -.+...-.+..|.+++.......+.- .........++ ....-.+|.+|+.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 122345666666642 1 12456667777888777653322100 00000000111 1335678899999
Q ss_pred CCCHHHHHHHHHHHHHhcC
Q psy664 313 HENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 313 ~~~~~v~~~a~~il~~~~~ 331 (379)
++.+.++..+..++-.++.
T Consensus 319 ~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred CCCchHHHHHHHHHHHHHh
Confidence 9999999999988876654
No 118
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.61 E-value=0.0002 Score=43.34 Aligned_cols=38 Identities=45% Similarity=0.539 Sum_probs=35.2
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhh
Q psy664 114 EKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151 (379)
Q Consensus 114 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~ 151 (379)
+.+..+.+.|+++.|++++.+++++++..++|+|+|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46777889999999999999999999999999999987
No 119
>KOG1991|consensus
Probab=97.60 E-value=0.029 Score=56.61 Aligned_cols=266 Identities=14% Similarity=0.148 Sum_probs=155.1
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHh--cCcHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVID--AGVCR 126 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~i~ 126 (379)
++---++..|||+++.+|..+ .+.......++....++|. +.+.-|+..|+.||..+..+.....+.+-. .+.++
T Consensus 473 s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq 550 (1010)
T KOG1991|consen 473 SPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQ 550 (1010)
T ss_pred CchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHH
Confidence 445567779999999999764 4555566788888888887 667889999999998887765433222221 25667
Q ss_pred HHHHhhcCCChHHHHHHHHHH-HHhhcCCchhhHHHhhcCcHHHHHHhhcC---CC---hhhHHHHHHHHHHhhc-----
Q psy664 127 RLVELLMHDQHKVVSAALRAV-GNIVTGDDQQTQVILNCSALMCLLHLIQS---PK---ESIRKEACWAVSNITA----- 194 (379)
Q Consensus 127 ~L~~lL~~~~~~i~~~al~~L-~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---~~---~~v~~~a~~~l~nl~~----- 194 (379)
.|+.+.+.-+.+....++..+ +..+..-......+ -..+.....+++.. .+ .+-.-.|.++|..+..
T Consensus 551 ~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~ 629 (1010)
T KOG1991|consen 551 ELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSL 629 (1010)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 777777765544444444433 33322111111111 12345566677763 11 2333444455544432
Q ss_pred -CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHH
Q psy664 195 -GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNG 273 (379)
Q Consensus 195 -~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~ 273 (379)
..++..+. ++..++|.+-.++++.-.++-.+++..+.+++ ...++.-..+. |+++.+.+.+.....+.-..+.-+
T Consensus 630 e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t-~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~ 705 (1010)
T KOG1991|consen 630 ENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLT-FLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPA 705 (1010)
T ss_pred hccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh-hhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 22322222 23356677777788877788888888888876 44433333344 347777777777667777777888
Q ss_pred HHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHH--HHHHHHHHHHHhc
Q psy664 274 LENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIE--IYQKAFDIIEHYF 330 (379)
Q Consensus 274 L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~--v~~~a~~il~~~~ 330 (379)
|.|.+..+..... +...|...+ ++.+..++.+++.+ -...|.++++-+.
T Consensus 706 l~N~vt~g~~~~~---s~~~y~~il-----~~i~~~~l~~e~~~D~d~~~a~kLle~ii 756 (1010)
T KOG1991|consen 706 LHNYVTYGTPSLL---SNPDYLQIL-----LEIIKKVLTSENGEDSDCESACKLLEVII 756 (1010)
T ss_pred HhhheeeCchhhh---ccchHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 8888777654322 122233333 45556666554322 2334566665443
No 120
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.59 E-value=0.00044 Score=50.83 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh--cCCChHHHHHHHHHHHHhhcCCchhhHHHhh
Q psy664 97 VLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL--MHDQHKVVSAALRAVGNIVTGDDQQTQVILN 163 (379)
Q Consensus 97 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~ 163 (379)
.+......++|++..+....+.+.+.|+++.+++.- +..+|-+++.|++++.|++.++++..+.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 356778999999999999999999999999999984 4568999999999999999999888775543
No 121
>KOG4535|consensus
Probab=97.58 E-value=0.00011 Score=67.65 Aligned_cols=219 Identities=15% Similarity=0.088 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHH-hhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh
Q psy664 53 LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSR-LLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVEL 131 (379)
Q Consensus 53 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l 131 (379)
...+..+|-+++++........+... +-..+.+.. +=.+++.-++..|.+++.-..-++.-.........+...+...
T Consensus 363 ~Tl~~s~Cdals~i~~~~f~~lpn~~-~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~s 441 (728)
T KOG4535|consen 363 PTLQASACDALSSILPEAFSNLPNDR-QTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMS 441 (728)
T ss_pred CCchhHHHHHHhhcCchhhcCCCCcc-hhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHH
Confidence 34455566666666554322211111 112222222 2223344577788888887776655455545545566666677
Q ss_pred hcCCChHHHHHHHHHHHHhhc----CCch---hhHHHhhcCcHHHHHHhh---cCCChhhHHHHHHHHHHhhcCChHHHH
Q psy664 132 LMHDQHKVVSAALRAVGNIVT----GDDQ---QTQVILNCSALMCLLHLI---QSPKESIRKEACWAVSNITAGNRQQIQ 201 (379)
Q Consensus 132 L~~~~~~i~~~al~~L~nl~~----~~~~---~~~~~~~~~~l~~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~ 201 (379)
+.+..-..+..+.|++|||+. +.+. ....+. .-.+..+...- ...+.+|+..|.++++|+.. ..+
T Consensus 442 l~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq 516 (728)
T KOG4535|consen 442 LEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQ 516 (728)
T ss_pred hhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHH
Confidence 777777889999999999974 2221 222221 11222222222 22358899999999999853 233
Q ss_pred HHHhcCc--------hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHH
Q psy664 202 AVIDANI--------FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALN 272 (379)
Q Consensus 202 ~~~~~~~--------i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~ 272 (379)
.+.+.++ ...+-...-.+..+|+-+||++++|+.....-.....=....+++.|+.++.+ .+.+|+..|..
T Consensus 517 ~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~ 596 (728)
T KOG4535|consen 517 PIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAA 596 (728)
T ss_pred HhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhh
Confidence 3333221 11111222234679999999999999743221000000112346677777754 67788888887
Q ss_pred HHHHH
Q psy664 273 GLENI 277 (379)
Q Consensus 273 ~L~~l 277 (379)
+|..-
T Consensus 597 aL~vp 601 (728)
T KOG4535|consen 597 ALSVP 601 (728)
T ss_pred hhcCC
Confidence 76543
No 122
>KOG0915|consensus
Probab=97.58 E-value=0.0023 Score=66.72 Aligned_cols=251 Identities=13% Similarity=0.118 Sum_probs=155.5
Q ss_pred CCChhHHH-HHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHH---hcCCChHHHHHHHhcCcH
Q psy664 50 KNRLSMVR-NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY---LSDGPNEKIQAVIDAGVC 125 (379)
Q Consensus 50 ~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~---l~~~~~~~~~~~~~~g~i 125 (379)
++++..+. ..+|.|+..-+-............+...++.+|.++|+-.|.-|...++- |.+.+ -. .+.+
T Consensus 829 s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~--~k-----~~LV 901 (1702)
T KOG0915|consen 829 SPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS--LK-----KSLV 901 (1702)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch--hH-----HHHH
Confidence 77777776 67899988755432333334456788999999999998888888877763 33332 22 2344
Q ss_pred HHHHHhhcCCC---------hHH-------------HHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhH
Q psy664 126 RRLVELLMHDQ---------HKV-------------VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIR 182 (379)
Q Consensus 126 ~~L~~lL~~~~---------~~i-------------~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~ 182 (379)
..|++-|.... .++ ....-.-|.|++.+ +-+..++-.++++-+|.- ..-|
T Consensus 902 ~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-------l~qPdLVYKFM~LAnh~A~wnSk 974 (1702)
T KOG0915|consen 902 DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-------LGQPDLVYKFMQLANHNATWNSK 974 (1702)
T ss_pred HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-------cCChHHHHHHHHHhhhhchhhcc
Confidence 45555443221 111 11112233333321 112234455666665543 6667
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC
Q psy664 183 KEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL 262 (379)
Q Consensus 183 ~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 262 (379)
+-|++-++-|+....+..++... .++|.|.+.=.+++..|+. |+.-|.|.+...+...+.... ..++.-|+.-|.+.
T Consensus 975 ~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen 975 KGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSK 1051 (1702)
T ss_pred cchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccch
Confidence 88888889888766665555544 6899999888888888775 666666766444444433322 34677777778888
Q ss_pred CHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHH
Q psy664 263 DAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIE 327 (379)
Q Consensus 263 d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~ 327 (379)
.-++|+.+|-||.-++...+.. .+.+.+-+ ..+.+.+.+++=.+.|++.|.....
T Consensus 1052 ewRVReasclAL~dLl~g~~~~--------~~~e~lpe--lw~~~fRvmDDIKEsVR~aa~~~~~ 1106 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFD--------QVKEKLPE--LWEAAFRVMDDIKESVREAADKAAR 1106 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChH--------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999865433 23333322 2566667777777778876654433
No 123
>KOG2734|consensus
Probab=97.55 E-value=0.02 Score=52.69 Aligned_cols=221 Identities=14% Similarity=0.202 Sum_probs=151.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCC---------chhhHHHhhcCcHHH
Q psy664 99 ADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD---------DQQTQVILNCSALMC 169 (379)
Q Consensus 99 ~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~---------~~~~~~~~~~~~l~~ 169 (379)
...+.-+..++..+ +....+++..+++.++.+|.|++.++....+..+..+...+ ......+++.++++.
T Consensus 102 hd~IQ~mhvlAt~P-dLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 102 HDIIQEMHVLATMP-DLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHhhhcCh-HHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 44555566666665 67788999999999999999999999999999999887421 134567788899999
Q ss_pred HHHhhcCCChhhHHH------HHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh-Cc-HHHHHHHHHHHHHHhcCCCHH
Q psy664 170 LLHLIQSPKESIRKE------ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK-AE-FKTRKEAAWAITNATSGGTPD 241 (379)
Q Consensus 170 L~~lL~~~~~~v~~~------a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~-~~-~~v~~~a~~~l~nl~~~~~~~ 241 (379)
|++-+.+-+..++.+ +...+-|+..-.++......+.|++..|..-+.. +. ...+..|..+++-+. ..+.+
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaill-q~s~e 259 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILL-QNSDE 259 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHh-ccCch
Confidence 999887666555544 4556677777788888888888999998774433 22 334555666666665 44444
Q ss_pred HHHHHHHcCChHHHHHhhc---cCC------HHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc
Q psy664 242 QIRYLIQQGCIEPFCELLT---LLD------AKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS 312 (379)
Q Consensus 242 ~~~~l~~~~~i~~L~~lL~---~~d------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~ 312 (379)
....+-..+++..++.-+. ..| .+.-++...+|+..+....+. ..|-...|++-..-++.
T Consensus 260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-----------~~Fl~~EGlqLm~Lmlr 328 (536)
T KOG2734|consen 260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-----------ERFLKGEGLQLMNLMLR 328 (536)
T ss_pred hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-----------hhhhccccHHHHHHHHH
Confidence 4445556677887777653 222 367777788888777655443 34555556665554454
Q ss_pred CCCHHHHHHHHHHHHHhcCCC
Q psy664 313 HENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 313 ~~~~~v~~~a~~il~~~~~~~ 333 (379)
+ ....+..|.++|+.....+
T Consensus 329 ~-Kk~sr~SalkvLd~am~g~ 348 (536)
T KOG2734|consen 329 E-KKVSRGSALKVLDHAMFGP 348 (536)
T ss_pred H-HHHhhhhHHHHHHHHHhCC
Confidence 4 4456667778887655543
No 124
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.55 E-value=0.013 Score=53.46 Aligned_cols=229 Identities=12% Similarity=0.136 Sum_probs=156.8
Q ss_pred chhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCC---hHh---H-hhhHHHHHHhhcCCChHHHHHH
Q psy664 30 PSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPD---FAK---V-APALACLSRLLFHADPDVLADA 101 (379)
Q Consensus 30 ~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~---~-~~~l~~L~~lL~~~d~~v~~~a 101 (379)
.+....+.+.+.+..|+..| .-+-+.+..++-+++++.+....... ... . ..++..|+..-. ++++...+
T Consensus 66 ~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~ 143 (335)
T PF08569_consen 66 AQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNC 143 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchH
Confidence 45566788889999999999 77889999999999999988644322 111 1 345555555544 56666666
Q ss_pred HHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc---CcHHHHHHhhcCCC
Q psy664 102 CWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC---SALMCLLHLIQSPK 178 (379)
Q Consensus 102 ~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~ 178 (379)
-..|...+.+. ...+.++....+..+.+.++.++-++...|..++.-+.+.........+.. .+.....++|.+++
T Consensus 144 g~mlRec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N 222 (335)
T PF08569_consen 144 GDMLRECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN 222 (335)
T ss_dssp HHHHHHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS
T ss_pred HHHHHHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 66777777664 466778888889999999999999999999999999887665554444443 35667888999999
Q ss_pred hhhHHHHHHHHHHhhcC--ChHHH-HHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC--CHHHHHHHHHc--CC
Q psy664 179 ESIRKEACWAVSNITAG--NRQQI-QAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG--TPDQIRYLIQQ--GC 251 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~--~~~~~-~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~l~~~--~~ 251 (379)
.-+|+.++..|+.+... +.... ..+-+..-+..++.+|.+.+..++-+|..++--+++.. ++.....+..+ ..
T Consensus 223 YvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kL 302 (335)
T PF08569_consen 223 YVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKL 302 (335)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHH
T ss_pred eEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 99999999999997642 22222 23334478889999999999999999999988776532 33333334432 34
Q ss_pred hHHHHHhhcc
Q psy664 252 IEPFCELLTL 261 (379)
Q Consensus 252 i~~L~~lL~~ 261 (379)
+..|-++..+
T Consensus 303 l~fl~~f~~~ 312 (335)
T PF08569_consen 303 LRFLKDFHTD 312 (335)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHhCCCC
Confidence 4444444333
No 125
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.54 E-value=0.00059 Score=50.15 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc--CCChhhHHHHHHHHHHhhcCChHHHHHHH
Q psy664 139 VVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ--SPKESIRKEACWAVSNITAGNRQQIQAVI 204 (379)
Q Consensus 139 i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 204 (379)
++...+++|+|++..+....+.+.+.|++|.+++... ..+|-+++-|.|+|.|++.++++....+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4677899999999999999999999999999998864 44699999999999999999988766544
No 126
>KOG2259|consensus
Probab=97.52 E-value=0.0019 Score=61.92 Aligned_cols=193 Identities=19% Similarity=0.216 Sum_probs=131.1
Q ss_pred hHHHHhcC-CCChhHHHHH---HHHHHHHhC--CCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHH
Q psy664 42 LYPLIDKP-KNRLSMVRNS---VWVLSNLCR--GKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK 115 (379)
Q Consensus 42 i~~Ll~lL-~~~~~~~~~a---~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~ 115 (379)
....++.+ ++...++..| .|.++|.+- .............+...+...+.+-...|+..|..+|+.+..-+++.
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~ 315 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI 315 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH
Confidence 44555666 5556666544 677788773 22222233344567777888888777788888887777665444433
Q ss_pred HHHHHh--------------------------------------------------cCcHHHHHHhhcCCChHHHHHHHH
Q psy664 116 IQAVID--------------------------------------------------AGVCRRLVELLMHDQHKVVSAALR 145 (379)
Q Consensus 116 ~~~~~~--------------------------------------------------~g~i~~L~~lL~~~~~~i~~~al~ 145 (379)
+...++ .|+...++.-|+++--+++++|+.
T Consensus 316 i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~ 395 (823)
T KOG2259|consen 316 IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVA 395 (823)
T ss_pred HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHH
Confidence 332222 223334444444455678999999
Q ss_pred HHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHH
Q psy664 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRK 225 (379)
Q Consensus 146 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~ 225 (379)
.++.++...+.... ..+..|+..+++....||..|..++.-|+.+ ..++...++.+...|.+..+++|.
T Consensus 396 Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe 464 (823)
T KOG2259|consen 396 SLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVRE 464 (823)
T ss_pred HHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHH
Confidence 99999988777665 3578899999988899999999999998754 234456778888999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHH
Q psy664 226 EAAWAITNATSGGTPDQIRYL 246 (379)
Q Consensus 226 ~a~~~l~nl~~~~~~~~~~~l 246 (379)
+.-..|.+. ...+.+.+..+
T Consensus 465 ~l~elL~~~-~~~d~~~i~m~ 484 (823)
T KOG2259|consen 465 ALRELLKNA-RVSDLECIDMC 484 (823)
T ss_pred HHHHHHHhc-CCCcHHHHHHH
Confidence 888888874 45565555544
No 127
>KOG1060|consensus
Probab=97.51 E-value=0.013 Score=57.58 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=148.3
Q ss_pred HHHHhcC-CCChhHHHHH-HHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q psy664 43 YPLIDKP-KNRLSMVRNS-VWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 43 ~~Ll~lL-~~~~~~~~~a-~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~ 120 (379)
.-|..+| +........| -++++-++++++ .....|..++..-+.|.+++.-.---|..-+...++.. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--L- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--L- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--e-
Confidence 3566777 5555555544 467777788864 56788999999999999999887766666665543221 1
Q ss_pred hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHH
Q psy664 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQI 200 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 200 (379)
=-|..+-+-|.++++-++..|+++|+.|=.. ++..=++-.+.+...+..+.||+.|+.+|--+-.-.+++.
T Consensus 108 --LSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 108 --LSINTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred --eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 1366777789999999999999999865321 1111123345566677889999999999999877666665
Q ss_pred HHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 201 QAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 201 ~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
.+ ++..+-.+|.+.++.|...|+.++-.+| ++.+..+- +-...||.+|.+-|..-+..++..|.+-+..
T Consensus 179 ~q-----L~e~I~~LLaD~splVvgsAv~AF~evC----PerldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 179 DQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVC----PERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred HH-----HHHHHHHHhcCCCCcchhHHHHHHHHhc----hhHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 53 3456667888999999999999999986 45555543 3488999999887777776666666666544
No 128
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.47 E-value=0.014 Score=48.33 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHh
Q psy664 94 DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHL 173 (379)
Q Consensus 94 d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 173 (379)
|+.++..++.+++-|+..-+...+ ..++.+...|+++++.++..|+.+|..+...+.... +..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 578999999999998855443332 368999999999999999999999999986532111 12234778888
Q ss_pred hcCCChhhHHHHHHHHHHhhcC
Q psy664 174 IQSPKESIRKEACWAVSNITAG 195 (379)
Q Consensus 174 L~~~~~~v~~~a~~~l~nl~~~ 195 (379)
+.+++++|+..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998654
No 129
>KOG0211|consensus
Probab=97.46 E-value=0.01 Score=59.56 Aligned_cols=266 Identities=18% Similarity=0.124 Sum_probs=165.7
Q ss_pred hhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q psy664 31 SVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLS 109 (379)
Q Consensus 31 ~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~ 109 (379)
.++..+....++|.+-.+. +.+..++...+-....+.-. .+..-.....+|.+...++..++.++.+..|.+..+-
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~---~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~ 465 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPI---LPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLE 465 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCcc---CCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHH
Confidence 3344555556666666555 55555554444333333221 2222234567888898999999999999999887665
Q ss_pred CCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHH
Q psy664 110 DGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAV 189 (379)
Q Consensus 110 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 189 (379)
..++..-...+....++.+..+-......++.+.++.+..++.... ..+++...-+.+...+.+....+++.|+..+
T Consensus 466 ~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 466 EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 4443333335555678888888777788888888888888775332 3344455666666667666678898888888
Q ss_pred HHhhc--CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHH
Q psy664 190 SNITA--GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKII 267 (379)
Q Consensus 190 ~nl~~--~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 267 (379)
.-++. |..-.++ ..++.++.+...+....|...+.++.-+......+. .....++.+..+..+..+.|+
T Consensus 543 ~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR 613 (759)
T KOG0211|consen 543 PALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVR 613 (759)
T ss_pred HHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhh
Confidence 77664 3222222 456666666655556667666666665443222222 223458888888888999999
Q ss_pred HHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHH
Q psy664 268 QVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFD 324 (379)
Q Consensus 268 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~ 324 (379)
-.++..|..+...-... ..+.-....++.|-.+++.+++-.|..
T Consensus 614 ~nvak~L~~i~~~L~~~-------------~~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 614 INVAKHLPKILKLLDES-------------VRDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred hhHHHHHHHHHhhcchH-------------HHHHHHHHHHHHhccCcccchhHHHHH
Confidence 99999998887754322 222223444455555666555555443
No 130
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.43 E-value=0.013 Score=46.75 Aligned_cols=130 Identities=16% Similarity=0.108 Sum_probs=102.1
Q ss_pred HHHHHhcCcHHHHHHhhcCCC------hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHH
Q psy664 116 IQAVIDAGVCRRLVELLMHDQ------HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP--KESIRKEACW 187 (379)
Q Consensus 116 ~~~~~~~g~i~~L~~lL~~~~------~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~ 187 (379)
...++..+++..|++++++.. .++...++.++..+.......= ...+..++..++...... +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 345788899999999998865 3777888888888876432111 244556777788887654 4889999999
Q ss_pred HHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy664 188 AVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYL 246 (379)
Q Consensus 188 ~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l 246 (379)
.+-++...++...+.+.+.=-++.|+..|+.++++++..|...+..+....++...+.+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999888888788887777899999999999999999999999888877776665544
No 131
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.41 E-value=0.068 Score=51.15 Aligned_cols=233 Identities=14% Similarity=0.068 Sum_probs=149.3
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC-----ChHHHHHHHHHHHHhcCCChHHHHHHHhc-C
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA-----DPDVLADACWAISYLSDGPNEKIQAVIDA-G 123 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-----d~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g 123 (379)
..+..+...|..||+|+...+..........+..+.++..|+.. +.++.--..+.|.-++....+.+..+++. +
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 55788999999999999999866666677778899999999865 67888888888887877666666555555 7
Q ss_pred cHHHHHHhhcC-----------------CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC---------C
Q psy664 124 VCRRLVELLMH-----------------DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS---------P 177 (379)
Q Consensus 124 ~i~~L~~lL~~-----------------~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---------~ 177 (379)
++..+...|.. .+......+++.+-|+....+.... -.....++.++.++.+ +
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 77777766541 1445677899999999765443322 1123344444444321 1
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHH-----------HHHhcCchHHHHHHHHhC----c----HHHHHHHHHHHHHHhcCC
Q psy664 178 KESIRKEACWAVSNITAGNRQQIQ-----------AVIDANIFPSLIEILQKA----E----FKTRKEAAWAITNATSGG 238 (379)
Q Consensus 178 ~~~v~~~a~~~l~nl~~~~~~~~~-----------~~~~~~~i~~Li~ll~~~----~----~~v~~~a~~~l~nl~~~~ 238 (379)
.......+..+|.|+-....+... ...+...+..++++|... . .+...-.+.+|.+++ ..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~-~~ 280 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA-RA 280 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH-Hh
Confidence 245667777777776222111100 001123556666666542 1 234555666777776 33
Q ss_pred CHHHHHHHHH----------------cCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 239 TPDQIRYLIQ----------------QGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 239 ~~~~~~~l~~----------------~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
+....+++.. ..+-..|+.++.+.++.++..+...|..++....+.
T Consensus 281 ~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 281 AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHH
Confidence 3444444432 244557999999988999999999888888765443
No 132
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.33 E-value=0.024 Score=47.01 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHH
Q psy664 136 QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEI 215 (379)
Q Consensus 136 ~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~l 215 (379)
++.++..++.++|.++..-+...+ ..+|.+...|+++++.||+.|+.+++.+...+.-.. +..++..+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 467899999999999875544433 468899999999999999999999999865432111 11334777788
Q ss_pred HHhCcHHHHHHHHHHHHHHhcCCCHH
Q psy664 216 LQKAEFKTRKEAAWAITNATSGGTPD 241 (379)
Q Consensus 216 l~~~~~~v~~~a~~~l~nl~~~~~~~ 241 (379)
+.+.+++++..|..++..+....+++
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999987542333
No 133
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.33 E-value=0.0057 Score=48.78 Aligned_cols=121 Identities=13% Similarity=0.127 Sum_probs=98.6
Q ss_pred hHhHhhhHHHHHHhhcCCC------hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHHH
Q psy664 76 FAKVAPALACLSRLLFHAD------PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRAV 147 (379)
Q Consensus 76 ~~~~~~~l~~L~~lL~~~d------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~L 147 (379)
.+...++++.|++++++.. .++...++.++..|.++.. ..-..+...++.+++.+++.+ +..+...|+.+|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 3456789999999998755 4888899999999998753 223466667899999998874 689999999999
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
-+++..++...+.+.+.=-++.|+..|+..+..++..|...+.-+....+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 99999888777778777789999999999999999999988887655433
No 134
>KOG4535|consensus
Probab=97.32 E-value=0.0003 Score=64.85 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc----CChH--HHHHHHhcC
Q psy664 134 HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA----GNRQ--QIQAVIDAN 207 (379)
Q Consensus 134 ~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~----~~~~--~~~~~~~~~ 207 (379)
+.+.-++.+|+++++-.+-..........-......+...+.++.-..|..+.|+++||+. +-|. ..+.=+..-
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 3445567788888887776655555555555566667777777778899999999999975 2221 111111112
Q ss_pred chHHHHHHHHh---CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-------CChHHHHHhhc-cCCHHHHHHHHHHHHH
Q psy664 208 IFPSLIEILQK---AEFKTRKEAAWAITNATSGGTPDQIRYLIQQ-------GCIEPFCELLT-LLDAKIIQVALNGLEN 276 (379)
Q Consensus 208 ~i~~Li~ll~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~-------~~i~~L~~lL~-~~d~~v~~~al~~L~~ 276 (379)
.+..++..... ..++|+.+|+.+|.|+.. ..+.+.+. +.+..+.+--. ....+|+-+++.+++|
T Consensus 482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ-----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gN 556 (728)
T KOG4535|consen 482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ-----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGN 556 (728)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH-----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHH
Confidence 33344433222 357899999999999863 22222222 22222222222 2356899999999999
Q ss_pred HHHHcH
Q psy664 277 ILKLGE 282 (379)
Q Consensus 277 l~~~~~ 282 (379)
++++..
T Consensus 557 Lfkn~a 562 (728)
T KOG4535|consen 557 LFKNPA 562 (728)
T ss_pred hhcCcc
Confidence 998654
No 135
>KOG3036|consensus
Probab=97.30 E-value=0.05 Score=46.29 Aligned_cols=148 Identities=13% Similarity=0.176 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-----CChHHHHHHHHHHHHhhcCC-chhhHHHhhcCcHHH
Q psy664 96 DVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-----DQHKVVSAALRAVGNIVTGD-DQQTQVILNCSALMC 169 (379)
Q Consensus 96 ~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~al~~L~nl~~~~-~~~~~~~~~~~~l~~ 169 (379)
.-...++..|-.+++++ +.+..+++..+--.+-.+|.. +.+.++..+++.+|.+...+ ++....+...+++|.
T Consensus 94 nRVcnaL~LlQcvASHp-dTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHP-DTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCc-chHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 33455666666777787 566778888776666666653 46788999999999999654 455567788899999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhc--------CchH-HHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 170 LLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA--------NIFP-SLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 170 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--------~~i~-~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
+++.+..++..-+.-|+.++.-|...+ .....+... .++. .+.++.+.+++.+.+.++.+..+++ .++
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD-~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs--dnp 249 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDD-VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS--DNP 249 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhcc-ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCH
Confidence 999999999999999999999875432 222222111 1233 3445566678999999999999984 455
Q ss_pred HHHHHHH
Q psy664 241 DQIRYLI 247 (379)
Q Consensus 241 ~~~~~l~ 247 (379)
.....+.
T Consensus 250 rar~aL~ 256 (293)
T KOG3036|consen 250 RARAALR 256 (293)
T ss_pred HHHHHHH
Confidence 5444443
No 136
>KOG1240|consensus
Probab=97.30 E-value=0.0035 Score=64.12 Aligned_cols=233 Identities=15% Similarity=0.080 Sum_probs=151.7
Q ss_pred hCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCC---CCCChHhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhcCCC
Q psy664 38 DNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKT---PPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGP 112 (379)
Q Consensus 38 ~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~aL~~l~~~~ 112 (379)
=.-++|.++.++ ++...++..|+.+|..+...-. +.-..+...-++|.|..++.+.+ .-++..-+..|+.|+..-
T Consensus 460 LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA 539 (1431)
T KOG1240|consen 460 LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA 539 (1431)
T ss_pred HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH
Confidence 344789999999 8888888888888877654322 23344556788999999998743 444444444444443210
Q ss_pred h------------------H-----------HHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhh
Q psy664 113 N------------------E-----------KIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILN 163 (379)
Q Consensus 113 ~------------------~-----------~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~ 163 (379)
. + ..+.+. .++-+.+..+|..+++.+++.-+..|+-+|.--.... .+
T Consensus 540 ~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sN 615 (1431)
T KOG1240|consen 540 YRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SN 615 (1431)
T ss_pred HHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cc
Confidence 0 0 001111 1233445566666777777777777777663211110 12
Q ss_pred cCcHHHHHHhhcCCChhhHHHHHHHHHHhhc--CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHH
Q psy664 164 CSALMCLLHLIQSPKESIRKEACWAVSNITA--GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPD 241 (379)
Q Consensus 164 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~ 241 (379)
.=+++.|+..|+..+..+|..-...|..++. |.. -.+..++|.|.+-|.++++-|...|+.++.-++..+.-
T Consensus 616 D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll- 689 (1431)
T KOG1240|consen 616 DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL- 689 (1431)
T ss_pred cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc-
Confidence 2368899999999998888887777776553 221 12447889999999999999999999999999854432
Q ss_pred HHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 242 QIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 242 ~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
++..=..+++-...+|-+++..+|..++..|..+...-.
T Consensus 690 --~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 690 --RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred --chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 222222346666677888999999999998888776543
No 137
>KOG0567|consensus
Probab=97.28 E-value=0.04 Score=47.40 Aligned_cols=210 Identities=18% Similarity=0.192 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh
Q psy664 54 SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA--DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVEL 131 (379)
Q Consensus 54 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l 131 (379)
....+.+++|...+.. ..+|.++..|... .+.++..|..+|+.+. .+ +.++.+-++
T Consensus 51 llkhe~ay~LgQ~~~~-----------~Av~~l~~vl~desq~pmvRhEAaealga~~-~~----------~~~~~l~k~ 108 (289)
T KOG0567|consen 51 LLKHELAYVLGQMQDE-----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP----------ESLEILTKY 108 (289)
T ss_pred hhccchhhhhhhhccc-----------hhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch----------hhHHHHHHH
Confidence 3444666666665543 4788999888754 4889999999999887 22 234555555
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCchhh-----HHH-------hhcCcHHHHHHhh-cCCChh-hHHHHHHHHHHhhcCCh
Q psy664 132 LMHDQHKVVSAALRAVGNIVTGDDQQT-----QVI-------LNCSALMCLLHLI-QSPKES-IRKEACWAVSNITAGNR 197 (379)
Q Consensus 132 L~~~~~~i~~~al~~L~nl~~~~~~~~-----~~~-------~~~~~l~~L~~lL-~~~~~~-v~~~a~~~l~nl~~~~~ 197 (379)
.+++...+++.+..++..+--.+.... ... ...+-+.-+...| +...+. -|..|.+.+.|+ |..
T Consensus 109 ~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~--g~E 186 (289)
T KOG0567|consen 109 IKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI--GTE 186 (289)
T ss_pred hcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc--CcH
Confidence 666666666666666655432111000 000 0112233344333 333333 356677777776 444
Q ss_pred HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHH
Q psy664 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQVALNGLE 275 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~ 275 (379)
+.+. .+++-+...+.-.|.+++++++.+- ++.. ++.|.+.|.. +.+.++..|+.+|+
T Consensus 187 eaI~---------al~~~l~~~SalfrhEvAfVfGQl~---s~~a---------i~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 187 EAIN---------ALIDGLADDSALFRHEVAFVFGQLQ---SPAA---------IPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred HHHH---------HHHHhcccchHHHHHHHHHHHhhcc---chhh---------hHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 4443 4455566677888999999999974 2332 5555555543 57789999999999
Q ss_pred HHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy664 276 NILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~ 329 (379)
.|.... +++.|..+++++.+-|++.|.-.++-+
T Consensus 246 aIa~e~---------------------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 246 AIADED---------------------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhcCHH---------------------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 877521 257788899999999999888877643
No 138
>KOG0915|consensus
Probab=97.25 E-value=0.029 Score=59.07 Aligned_cols=178 Identities=15% Similarity=0.106 Sum_probs=107.2
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHH
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV 119 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~ 119 (379)
+||.|.+.= +++..++ +++--+++..-.+....-......++.-|+.-|.+....+|+.+|.||..|..+.+... +
T Consensus 999 LIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~--~ 1075 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ--V 1075 (1702)
T ss_pred hhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH--H
Confidence 455555555 6666666 45555556555442333333456788888888888889999999999999997754221 2
Q ss_pred Hhc--CcHHHHHHhhcCCChHHHHH---HHHHHHHhhcCCch-----hhHHHhhcCcHHHHHH-hhcCCChhhHHHHHHH
Q psy664 120 IDA--GVCRRLVELLMHDQHKVVSA---ALRAVGNIVTGDDQ-----QTQVILNCSALMCLLH-LIQSPKESIRKEACWA 188 (379)
Q Consensus 120 ~~~--g~i~~L~~lL~~~~~~i~~~---al~~L~nl~~~~~~-----~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~ 188 (379)
.+. .+...+.+.+++=.+.+++. ++++|+.++..... ..+.++ ..++|.|.. -+-+.-+++|+.+..+
T Consensus 1076 ~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHHHHHH
Confidence 221 34444555555556667655 56667766532111 111111 123444432 1124458999999999
Q ss_pred HHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHH
Q psy664 189 VSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223 (379)
Q Consensus 189 l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v 223 (379)
+..++.+....+.+..- .++|.+++....-++.+
T Consensus 1155 l~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred HHHHHHhchhhhcchhh-HHHHHHHHHccccchHH
Confidence 99999887776655442 56777777666555443
No 139
>KOG1058|consensus
Probab=97.21 E-value=0.034 Score=54.48 Aligned_cols=219 Identities=15% Similarity=0.220 Sum_probs=118.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHH
Q psy664 83 LACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVI 161 (379)
Q Consensus 83 l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~ 161 (379)
+..+..+|.+.++.+...|..+|..++.++. ..+. +...+++++.. ++.++..-.+--|..+...+. ..+
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~---~il 315 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHE---KIL 315 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH---HHH
Confidence 4445556666666666666666666665442 2221 12233333322 222333333333333332111 111
Q ss_pred hhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 162 LNCSALMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 162 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
.|++--++++|..++-++++.+......+.. .+-+.+-.+++..+.+.--. =+....+.|..-+.++..+. ...+
T Consensus 316 --~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~ca-v~Fp 391 (948)
T KOG1058|consen 316 --QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACA-VKFP 391 (948)
T ss_pred --HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHh-hcCh
Confidence 2444556778889999999999988777654 34444433333222221110 01112355777777777754 4455
Q ss_pred HHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHH-HHhhcCCCHHHH
Q psy664 241 DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKI-EFLQSHENIEIY 319 (379)
Q Consensus 241 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l-~~l~~~~~~~v~ 319 (379)
+... .+++.|++.+.+.++..-..++..+...++.-++.. ..+ ++++ +.+-.-....++
T Consensus 392 ~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----------~~i-----i~~l~~~~~~irS~ki~ 451 (948)
T KOG1058|consen 392 EVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----------ASI-----IEKLLETFPQIRSSKIC 451 (948)
T ss_pred HHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----------HHH-----HHHHHHhhhhhcccccc
Confidence 5443 358899999998887766666666666666554432 222 2222 222233456788
Q ss_pred HHHHHHHHHhcCCCc
Q psy664 320 QKAFDIIEHYFGSEE 334 (379)
Q Consensus 320 ~~a~~il~~~~~~~~ 334 (379)
+-|.||+..|++.+.
T Consensus 452 rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 452 RGALWILGEYCEGLS 466 (948)
T ss_pred hhHHHHHHHHHhhhH
Confidence 899999999988765
No 140
>KOG0211|consensus
Probab=97.19 E-value=0.027 Score=56.54 Aligned_cols=260 Identities=13% Similarity=0.036 Sum_probs=167.9
Q ss_pred hCCChHHHHhhcCCCCCCccc---------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChH
Q psy664 8 DAGAVPVFIQLLLSPHEDQVT---------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFA 77 (379)
Q Consensus 8 ~~g~i~~L~~lL~s~~~~v~~---------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 77 (379)
.+.++|.+-.+..+.+..++. .|.....-.-...+|.++..+ +..+.++.+..|.++.+-......-...
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 334456666666666555544 111110000112334444455 6678889999998877765554444445
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh
Q psy664 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~ 157 (379)
.....+|.+..+-......++....+.+-.++.... ..+.+...-+.+..-+.+....++..|...+.-++.....
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~- 551 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS- 551 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc-
Confidence 567788888888776678999999998888875432 2344444455555556666778899999988888753321
Q ss_pred hHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Q psy664 158 TQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG 237 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~ 237 (379)
++. ....++.++....+++...|...+.++.-++.- .-+.+....++|.+.++..+..++||-.++..+..+...
T Consensus 552 -~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v---~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 552 -EWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV---LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred -chh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH---hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 111 123456666666666677888888887766531 112344557889999999999999999999999988754
Q ss_pred CCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 238 GTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 238 ~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
-... ..+..+.+.+..+..+++.+++..+..++..+...
T Consensus 627 L~~~----~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 627 LDES----VRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred cchH----HHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 4433 33444567777777788888888777776666543
No 141
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.17 E-value=0.036 Score=47.91 Aligned_cols=151 Identities=13% Similarity=0.208 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHHhcCCChHHHHHHHhc-CcHHHHHHh-------hcCCC--h---HHHHHHHHHHHHhhcCCchhhH
Q psy664 93 ADPDVLADACWAISYLSDGPNEKIQAVIDA-GVCRRLVEL-------LMHDQ--H---KVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 93 ~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~L~~l-------L~~~~--~---~i~~~al~~L~nl~~~~~~~~~ 159 (379)
.+++.++.|+.-|+.--+..++....+-.. |.+..|++= +..+. . .-.-.|+..+..++. .++.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 367778888877776665544444333333 555555432 22221 2 223456666666666 567777
Q ss_pred HHhhcCcHHHHHHhhcCCC-----hhhHHHHHHHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHH
Q psy664 160 VILNCSALMCLLHLIQSPK-----ESIRKEACWAVSNITA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITN 233 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~n 233 (379)
.++++.+.-+|..+|+..+ +.+|-...++++-+.. .+++.+..+++.+++|...+.|..++.-.|.-|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7889988888888886543 6788999999999876 566778889999999999999999998889999999999
Q ss_pred HhcCCCHHHHHHH
Q psy664 234 ATSGGTPDQIRYL 246 (379)
Q Consensus 234 l~~~~~~~~~~~l 246 (379)
++. ++....++
T Consensus 166 IL~--dd~GL~yi 176 (262)
T PF04078_consen 166 ILL--DDVGLNYI 176 (262)
T ss_dssp HHH--SHHHHHHH
T ss_pred HHc--chhHHHHH
Confidence 874 44444443
No 142
>KOG1943|consensus
Probab=97.13 E-value=0.19 Score=51.45 Aligned_cols=299 Identities=13% Similarity=0.089 Sum_probs=160.8
Q ss_pred CChHHHHhhcCCCCCCccc-------------CchhHHHHHhCCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCC
Q psy664 10 GAVPVFIQLLLSPHEDQVT-------------HPSVETMSLDNNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPP 74 (379)
Q Consensus 10 g~i~~L~~lL~s~~~~v~~-------------~~~~r~~i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~ 74 (379)
+++..|+.-|++.+..++- -++..+.+ +...+.++ ..+...-..+|-+|+.|+...--
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~v-----i~svid~~~p~e~~~aWHgacLaLAELA~rGlL-- 413 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQV-----IGSVIDLFNPAEDDSAWHGACLALAELALRGLL-- 413 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHH-----HHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc--
Confidence 5667777777777766665 22333333 44455555 33455556999999999987522
Q ss_pred ChHhHhhhHHHHHHhhcC--------CChHHHHHHHHHHHHhcCCCh-HHHHHHHhcCcHHHHHHhhcCCChHHHHHHHH
Q psy664 75 DFAKVAPALACLSRLLFH--------ADPDVLADACWAISYLSDGPN-EKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145 (379)
Q Consensus 75 ~~~~~~~~l~~L~~lL~~--------~d~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~ 145 (379)
..-....++|.+.+-|.- ....||..||.+++..+...+ ...+.+++.=+--.|...+=+++.++++.|..
T Consensus 414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 222345788888887753 336788888887777775432 22222222211222233344567788888887
Q ss_pred HHHHhhcCCchh---hHH----------------------Hhh-cCcHHHHHHh-----hcCCChhhHHHHHHHHHHhhc
Q psy664 146 AVGNIVTGDDQQ---TQV----------------------ILN-CSALMCLLHL-----IQSPKESIRKEACWAVSNITA 194 (379)
Q Consensus 146 ~L~nl~~~~~~~---~~~----------------------~~~-~~~l~~L~~l-----L~~~~~~v~~~a~~~l~nl~~ 194 (379)
++....-..... ... +.+ .|....+.+- +.|-+..+|+.++|+|.+++.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 776544211100 000 000 1222222222 345689999999999999875
Q ss_pred CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHH--HHHHHHHc---C---ChHHHHHhhccCC--H
Q psy664 195 GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPD--QIRYLIQQ---G---CIEPFCELLTLLD--A 264 (379)
Q Consensus 195 ~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~--~~~~l~~~---~---~i~~L~~lL~~~d--~ 264 (379)
..++ ......++++++...+.+...+.-+.-+.+.++.+...- ....+.+. + .++++++---... .
T Consensus 574 ~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~ 649 (1133)
T KOG1943|consen 574 TEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGT 649 (1133)
T ss_pred hhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHH
Confidence 5544 344578889998888888887766666666554211110 11112221 2 2333333222211 2
Q ss_pred HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 265 KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 265 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
-++...+..+.++..... .+...+...++...|.+...+++ .++..|.+.+..++
T Consensus 650 lmr~~~~~~Ie~~s~s~~----------~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~ 704 (1133)
T KOG1943|consen 650 LMRQATLKFIEQLSLSKD----------RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLV 704 (1133)
T ss_pred HHHHHHHHHHHHhhhccc----------hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHH
Confidence 334444444444443221 22233334455556666666666 66766665555443
No 143
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.025 Score=53.79 Aligned_cols=200 Identities=14% Similarity=0.177 Sum_probs=111.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhh
Q psy664 84 ACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILN 163 (379)
Q Consensus 84 ~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~ 163 (379)
|.|..-+++.-+.+...+++++..++..+- ....++ ..+..|-.+|.++....+..|+++|..++...++... .
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~---v 340 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS---V 340 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee---e
Confidence 333334444457888888888887775431 111222 2567777888899999999999999999865443321 1
Q ss_pred cCcHHHHHHhhcCCChhhHHHHHHHHHHhh-cCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHH
Q psy664 164 CSALMCLLHLIQSPKESIRKEACWAVSNIT-AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQ 242 (379)
Q Consensus 164 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~-~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~ 242 (379)
+=+-+-+++.+.+..+-..|. ..+. .|..+.+..+++ .++..++=++++-..+...|+..|++.. ..+.
T Consensus 341 --cN~evEsLIsd~Nr~IstyAI---TtLLKTGt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k~ 410 (898)
T COG5240 341 --CNKEVESLISDENRTISTYAI---TTLLKTGTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLF---PSKK 410 (898)
T ss_pred --cChhHHHHhhcccccchHHHH---HHHHHcCchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhC---cHHH
Confidence 123355666666666554444 4433 477777776553 3444444333332333444555555543 2222
Q ss_pred HHHHHHcCChHHHHHhh-ccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHH
Q psy664 243 IRYLIQQGCIEPFCELL-TLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKI 307 (379)
Q Consensus 243 ~~~l~~~~~i~~L~~lL-~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l 307 (379)
..+ +..|.+.| +.+..+..+.+.+++..++++.++.+++- .+..|..|++|..-+..
T Consensus 411 ~s~------l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra--Le~LC~fIEDcey~~I~ 468 (898)
T COG5240 411 LSY------LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA--LEVLCTFIEDCEYHQIT 468 (898)
T ss_pred HHH------HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH--HHHHHHHHhhcchhHHH
Confidence 221 33444433 33555677777777777777665443322 45566666665544433
No 144
>KOG1058|consensus
Probab=97.11 E-value=0.04 Score=54.04 Aligned_cols=264 Identities=14% Similarity=0.165 Sum_probs=141.5
Q ss_pred HHhCCChHHHHhcC------CCChhHHHHHHHHHHHHhCCCCC-CCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q psy664 36 SLDNNILYPLIDKP------KNRLSMVRNSVWVLSNLCRGKTP-PPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108 (379)
Q Consensus 36 i~~~g~i~~Ll~lL------~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l 108 (379)
+++..-+|.|+.-+ +.+.++.+ ..+..+.++-..+. +.-..-+-=+-...-+=|+++|+-+|-..++-|+.|
T Consensus 48 mlnGe~~p~Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckL 126 (948)
T KOG1058|consen 48 MLNGEDLPSLLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKL 126 (948)
T ss_pred HHcCCCchHHHHHHhheeeccCchHHHH-HHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhc
Confidence 34444555444332 44555544 33444444433222 222222222333444456788888888887777766
Q ss_pred cCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh-cCCChhhHHHHHH
Q psy664 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI-QSPKESIRKEACW 187 (379)
Q Consensus 109 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~ 187 (379)
-+. .+++ ..+|.+...|+|.+..++++|+.++..|....+. ++ ..+-..+-..| ...++.-+++|..
T Consensus 127 kE~------ELle-pl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~-pDapeLi~~fL~~e~DpsCkRNAFi 194 (948)
T KOG1058|consen 127 KEP------ELLE-PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LI-PDAPELIESFLLTEQDPSCKRNAFL 194 (948)
T ss_pred CcH------HHhh-hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hc-CChHHHHHHHHHhccCchhHHHHHH
Confidence 321 1332 3689999999999999999999999988754221 11 12223333333 2334555555543
Q ss_pred HHH-------------HhhcCC--hHHHH--------HH------HhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 188 AVS-------------NITAGN--RQQIQ--------AV------IDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 188 ~l~-------------nl~~~~--~~~~~--------~~------~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
.|. |+..-. .+..+ .+ .....+..++.+|.+.++.++.+|+.+|.++ ..
T Consensus 195 ~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~l--S~ 272 (948)
T KOG1058|consen 195 MLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTL--SN 272 (948)
T ss_pred HHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEc--cC
Confidence 332 221100 01111 11 1123455666677777777777777777765 33
Q ss_pred CHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHH
Q psy664 239 TPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIE 317 (379)
Q Consensus 239 ~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~ 317 (379)
.+..+..- ...+++++.. .|..+....+.-|..+-.... ..++ |.+--+.+++++++-+
T Consensus 273 ~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~~-------------~il~--~l~mDvLrvLss~dld 332 (948)
T KOG1058|consen 273 DPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALHE-------------KILQ--GLIMDVLRVLSSPDLD 332 (948)
T ss_pred CHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhhH-------------HHHH--HHHHHHHHHcCccccc
Confidence 44433322 3445555533 455555555555554442211 1121 2234456788999999
Q ss_pred HHHHHHHHHHHhcCCCc
Q psy664 318 IYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 318 v~~~a~~il~~~~~~~~ 334 (379)
|++++..+.-.+.+..+
T Consensus 333 vr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 333 VRSKTLDIALDLVSSRN 349 (948)
T ss_pred HHHHHHHHHHhhhhhcc
Confidence 99999999887777654
No 145
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.09 E-value=0.025 Score=53.73 Aligned_cols=187 Identities=17% Similarity=0.199 Sum_probs=118.1
Q ss_pred ChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhh-cCCC----hHHHHHHHHHHHHhc-CCC
Q psy664 41 ILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLL-FHAD----PDVLADACWAISYLS-DGP 112 (379)
Q Consensus 41 ~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~d----~~v~~~a~~aL~~l~-~~~ 112 (379)
.+..++.+. ..+...+..++.+++.+.-.- +.......++..+..-+ ...+ ........|...-+. .+.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKW---PDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 444555555 334445556666666666542 11113345555555544 2223 334444445554433 333
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh--------hHHHhhc----CcHHHHHHhhcCCChh
Q psy664 113 NEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ--------TQVILNC----SALMCLLHLIQSPKES 180 (379)
Q Consensus 113 ~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~--------~~~~~~~----~~l~~L~~lL~~~~~~ 180 (379)
+.. ...+..|+++|.+ +.+...+.+.++-+....+.. .+.+.+. ..+|.+++..+..+..
T Consensus 267 ~~~------~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 267 PLA------TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE 338 (415)
T ss_pred chH------HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh
Confidence 222 2357788888877 567888888888888663322 1222222 3567777777777777
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 181 IRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 181 v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
.+..-..+++++..+-|..+-.---..++|.+++.|+..+.+++..++.++..++...
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8888999999998888766544333479999999999999999999999999998433
No 146
>KOG0567|consensus
Probab=97.09 E-value=0.057 Score=46.50 Aligned_cols=203 Identities=17% Similarity=0.139 Sum_probs=130.8
Q ss_pred hHHHHHhCCChHHHHhcC---CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q psy664 32 VETMSLDNNILYPLIDKP---KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108 (379)
Q Consensus 32 ~r~~i~~~g~i~~Ll~lL---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l 108 (379)
+--++-....++.|+..+ +..+-++..|+.+|..+... ..++.+-+..+++-..++..+..++.++
T Consensus 59 ~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~-----------~~~~~l~k~~~dp~~~v~ETc~lAi~rl 127 (289)
T KOG0567|consen 59 VLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP-----------ESLEILTKYIKDPCKEVRETCELAIKRL 127 (289)
T ss_pred hhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcch-----------hhHHHHHHHhcCCccccchHHHHHHHHH
Confidence 334556677899999998 44566677899999988722 3667777877666778888777787776
Q ss_pred cCCChHHH-----HHH-H------hcCcHHHHHHh-hcCCChHH-HHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh
Q psy664 109 SDGPNEKI-----QAV-I------DAGVCRRLVEL-LMHDQHKV-VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI 174 (379)
Q Consensus 109 ~~~~~~~~-----~~~-~------~~g~i~~L~~l-L~~~~~~i-~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 174 (379)
-....-.. ... + ..+-+..+-.. ++.+.+.+ +..|+..|.|+-. ++ .+..|..-+
T Consensus 128 e~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l 196 (289)
T KOG0567|consen 128 EWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGL 196 (289)
T ss_pred HHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhc
Confidence 53211000 000 0 11123333333 33333333 4557777777642 12 344566667
Q ss_pred cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh--CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q psy664 175 QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK--AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCI 252 (379)
Q Consensus 175 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i 252 (379)
..++.-.|.+++++++.|-+ + -.+|.|.+.|.. .++.+|-+|+.+|+.+. +++. +
T Consensus 197 ~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa---~e~~---------~ 253 (289)
T KOG0567|consen 197 ADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA---DEDC---------V 253 (289)
T ss_pred ccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc---CHHH---------H
Confidence 77788999999999999832 2 246667766654 47899999999999974 4443 5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHH
Q psy664 253 EPFCELLTLLDAKIIQVALNGLENILK 279 (379)
Q Consensus 253 ~~L~~lL~~~d~~v~~~al~~L~~l~~ 279 (379)
+.|...+.++++-|++.|.-+|..+-.
T Consensus 254 ~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 254 EVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 566677888777788877777765443
No 147
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.03 E-value=0.19 Score=47.80 Aligned_cols=193 Identities=16% Similarity=0.206 Sum_probs=120.5
Q ss_pred HhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCC--ChHHHHHHHhcCcHHHHHHhh-cCCChHH----HHHHHHHHHHh
Q psy664 79 VAPALACLSRLLF-HADPDVLADACWAISYLSDG--PNEKIQAVIDAGVCRRLVELL-MHDQHKV----VSAALRAVGNI 150 (379)
Q Consensus 79 ~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~lL-~~~~~~i----~~~al~~L~nl 150 (379)
....+..++.+.. ..++..+..++.+++.++.. .++..+ .++..+...+ ....... .+...|+..-+
T Consensus 187 ~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 187 LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 3346666666644 44578888888888877743 222112 2334444444 2223333 34444555444
Q ss_pred hcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHH--------HHHHHhc----CchHHHHHHHHh
Q psy664 151 VTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ--------IQAVIDA----NIFPSLIEILQK 218 (379)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~--------~~~~~~~----~~i~~Li~ll~~ 218 (379)
......... .++..+..++.+ +++...|+.++.-+....++. ++.+.+. .++|.+++..+.
T Consensus 262 v~R~~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~ 334 (415)
T PF12460_consen 262 VMRGHPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE 334 (415)
T ss_pred HHcCCchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh
Confidence 432222222 345668888876 677888888888876542332 2222222 367777777777
Q ss_pred CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 219 ~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
.+...+.....+|++++. +-+..+-.---..++|.+++-|+.+|.+++..++.+|..++...+..
T Consensus 335 ~~~~~k~~yL~ALs~ll~-~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 335 ADDEIKSNYLTALSHLLK-NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred cChhhHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 777789999999999984 44443322222357888899999999999999999999999876543
No 148
>KOG1060|consensus
Probab=97.03 E-value=0.037 Score=54.55 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDG 111 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~ 111 (379)
+.++.+.-.++.++..++-.. ....++..|+++|.+ +.+++.-.+..+..++..
T Consensus 298 S~n~sVVmA~aql~y~lAP~~-------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN-------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIK 351 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH-------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence 678888888888888887543 356678888888764 556666666666666644
No 149
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.03 E-value=0.0016 Score=49.26 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=61.0
Q ss_pred CchHHHHHHH-HhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 207 NIFPSLIEIL-QKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 207 ~~i~~Li~ll-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
.++..|+++| .+.|+.+..-||.-|+.++ ...+..+..+-+.|+-..++.+|.++|++|+..|+.++..++..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~v-r~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFV-RHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHH-HH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHH-HHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4788899999 4458888999999999998 44577777777889999999999999999999999999988763
No 150
>KOG1991|consensus
Probab=97.03 E-value=0.33 Score=49.35 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=100.8
Q ss_pred HHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc------C--CChHHHHHHHHHHHHhcCC--ChHHHHHHHhcCcHHH
Q psy664 58 NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF------H--ADPDVLADACWAISYLSDG--PNEKIQAVIDAGVCRR 127 (379)
Q Consensus 58 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~--~d~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~ 127 (379)
+|..++..+++... .....++++.+++.+. . .++.-...|+.+++.|++- .....+-.++.=+++.
T Consensus 391 Aa~~~l~~~~~KR~----ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRG----KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHHHHHHHhcc----hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 45555566665431 2234577777777776 2 2456678888888888732 1111222333335777
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc-CCChhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy664 128 LVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ-SPKESIRKEACWAVSNITAGNRQQIQAVIDA 206 (379)
Q Consensus 128 L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 206 (379)
++..++++---++..|+|.++.++.-+-.....+ ..++....+.|. +.+--|+.+|+.++..+..+.+..-.++..+
T Consensus 467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 7888889988999999999999984322221111 234566667776 5568899999999999876655432323222
Q ss_pred --CchHHHHHHHHhCcHHHHHHHH
Q psy664 207 --NIFPSLIEILQKAEFKTRKEAA 228 (379)
Q Consensus 207 --~~i~~Li~ll~~~~~~v~~~a~ 228 (379)
++++.+..+.+.-+.+.....+
T Consensus 545 vp~~mq~lL~L~ne~End~Lt~vm 568 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDDLTNVM 568 (1010)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHH
Confidence 4555666666554444433333
No 151
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.00 E-value=0.075 Score=48.16 Aligned_cols=195 Identities=19% Similarity=0.247 Sum_probs=122.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhh--cCcHHHHHHhhcCCChhhHHHHHHHHHHhhc--CChHHH
Q psy664 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILN--CSALMCLLHLIQSPKESIRKEACWAVSNITA--GNRQQI 200 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~~~~ 200 (379)
+...+..+.+.....|+.++..+.++..... ..+.+.+ ..+++.+.+.++.++.+-+..|+.+++-++- |.....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4445555666778899999999998875432 2222222 2457778888887776666677777776643 333334
Q ss_pred HHHHhcCchHHHHHHHHhCc--HHHHHHHHHHHHHHhc--CCCHHHHHHHHHcCChHHH--HHhhc----------cCCH
Q psy664 201 QAVIDANIFPSLIEILQKAE--FKTRKEAAWAITNATS--GGTPDQIRYLIQQGCIEPF--CELLT----------LLDA 264 (379)
Q Consensus 201 ~~~~~~~~i~~Li~ll~~~~--~~v~~~a~~~l~nl~~--~~~~~~~~~l~~~~~i~~L--~~lL~----------~~d~ 264 (379)
..+.+ .+.|.|...+.++. +++|..++.+|+-++. ..+.+....+.+ .++.+ ....+ .+++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44544 57788888887654 4566666666665432 334444332222 13311 11111 1235
Q ss_pred HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 265 KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 265 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
.+...|+.+.+-++...+... +...+++ .+.+|..++++.+.+|+..|-..|.-+|+..
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~--------~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSK--------LEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHH--------HHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 799999999998887665432 1223322 3789999999999999999999888888754
No 152
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.00 E-value=0.12 Score=52.54 Aligned_cols=209 Identities=16% Similarity=0.177 Sum_probs=128.6
Q ss_pred hCCChHHHHhhcCCCCCCccc---CchhHHHHHhCCChHHHHhcC------CCChhHHHHHHHHHHHHhCCCCCCCChHh
Q psy664 8 DAGAVPVFIQLLLSPHEDQVT---HPSVETMSLDNNILYPLIDKP------KNRLSMVRNSVWVLSNLCRGKTPPPDFAK 78 (379)
Q Consensus 8 ~~g~i~~L~~lL~s~~~~v~~---~~~~r~~i~~~g~i~~Ll~lL------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 78 (379)
+..+.+.++.-|.+...+-.. --.....+.+.|++..++.++ +....+...+..+|...|.-+ ..++...
T Consensus 82 ~geAtE~~v~~l~~~~~~~~d~e~~~~~~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll 160 (802)
T PF13764_consen 82 DGEATEEFVESLEDDSEEEEDPEQEFKIASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALL 160 (802)
T ss_pred CCccchhhHhhccCccccccCHHHHHHHHHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 345677777777664322221 222335567899999999999 234567777888888888875 5566666
Q ss_pred HhhhHHHHHHhhc----CCC----hHHHHHHHHHHHHhcCCChH-HHH---HHH--------hcCcHHHHHHhhcCC---
Q psy664 79 VAPALACLSRLLF----HAD----PDVLADACWAISYLSDGPNE-KIQ---AVI--------DAGVCRRLVELLMHD--- 135 (379)
Q Consensus 79 ~~~~l~~L~~lL~----~~d----~~v~~~a~~aL~~l~~~~~~-~~~---~~~--------~~g~i~~L~~lL~~~--- 135 (379)
..++++.|+..+. .+. .++.+..+.++-.+...... ... ... ...-+..+++.+.++
T Consensus 161 ~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r 240 (802)
T PF13764_consen 161 ELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVR 240 (802)
T ss_pred HcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcccc
Confidence 6788888877664 433 57777777766655533211 110 001 112366777777653
Q ss_pred -ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc-----CCChhhHHHHHHHHHHhhcC------ChHHHHHH
Q psy664 136 -QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ-----SPKESIRKEACWAVSNITAG------NRQQIQAV 203 (379)
Q Consensus 136 -~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~------~~~~~~~~ 203 (379)
++.+....+++|.+++.++++..+.+++. +-|++ ++=. ..+..+. +..+..++.+ .....+.+
T Consensus 241 ~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F~p~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~I 315 (802)
T PF13764_consen 241 SNPQILQALARILPFLTYGNEEKMDALVEH-FKPYL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKI 315 (802)
T ss_pred CCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-HHHhc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHH
Confidence 78899999999999999998887766543 22222 2111 1112232 3333444331 23556788
Q ss_pred HhcCchHHHHHHHHhCcHH
Q psy664 204 IDANIFPSLIEILQKAEFK 222 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~~~~~ 222 (379)
++.|++...++.+...-|.
T Consensus 316 l~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 316 LESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred HHhhHHHHHHHHHHHhCcc
Confidence 8999999999988775444
No 153
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.98 E-value=0.0017 Score=48.99 Aligned_cols=73 Identities=29% Similarity=0.327 Sum_probs=61.8
Q ss_pred hhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 80 APALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 80 ~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
-.++..|+++|. +.|+.+..-||.=|+.++...+..+..+-+.|+=..+++++.+++++++..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 357888999994 5578888999999999998888888888788999999999999999999999999987753
No 154
>KOG2274|consensus
Probab=96.94 E-value=0.047 Score=54.61 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=112.9
Q ss_pred CCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc--CCChHHHHHHHHHHHHhcCCChHH
Q psy664 39 NNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF--HADPDVLADACWAISYLSDGPNEK 115 (379)
Q Consensus 39 ~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~aL~~l~~~~~~~ 115 (379)
-++++.|+++. ..+.++....+.+|+..|.-+ +.........+.|.+..+.. ++||.+...+-.++-.++... ++
T Consensus 529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d-pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~ 606 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLD-PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-AN 606 (1005)
T ss_pred hHHHHHHHHHcccccHHHHHHHHHHHHHHhccC-hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hh
Confidence 34555666666 677888889999999999987 54555566778888777543 567888777777777666422 22
Q ss_pred HHHHHhcCcHHHHHHhhcCCC----hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh-cCCChhhHHHHHHHHH
Q psy664 116 IQAVIDAGVCRRLVELLMHDQ----HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI-QSPKESIRKEACWAVS 190 (379)
Q Consensus 116 ~~~~~~~g~i~~L~~lL~~~~----~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~ 190 (379)
... ...-.+|.+++.|+.+. .....-++..|..+.++.+.-....+-.-+.|.+.+.. ++.+......+..++.
T Consensus 607 ~g~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 607 YGP-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred hcc-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 221 22347999999999876 66777888888888876555444444455677777765 5666888899999999
Q ss_pred HhhcCChHHHH
Q psy664 191 NITAGNRQQIQ 201 (379)
Q Consensus 191 nl~~~~~~~~~ 201 (379)
.+.....++..
T Consensus 686 a~Is~~~eq~~ 696 (1005)
T KOG2274|consen 686 ALISVTLEQLL 696 (1005)
T ss_pred HHHhcCHHHHH
Confidence 87776666554
No 155
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.09 Score=50.17 Aligned_cols=129 Identities=11% Similarity=0.129 Sum_probs=82.2
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 129 (379)
+.-..+...++.++..++... .........+..|-.+|.+.....+-.|+++|..|+-..++... + .=+.+-
T Consensus 275 ~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-v----cN~evE 346 (898)
T COG5240 275 DKFEMVFLEAARAVCALSEEN---VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-V----CNKEVE 346 (898)
T ss_pred CcchhhhHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-e----cChhHH
Confidence 334556668888887777653 33445677888899999999999999999999999866554322 1 123444
Q ss_pred HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 130 ELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 130 ~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
.++.+.+..+...|+.+|-. +|+++..+.++ ..+..++++-+...+.-+..++..++
T Consensus 347 sLIsd~Nr~IstyAITtLLK--TGt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 347 SLISDENRTISTYAITTLLK--TGTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred HHhhcccccchHHHHHHHHH--cCchhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHH
Confidence 56667777787777777753 45666655443 44555555444444433444444443
No 156
>KOG1967|consensus
Probab=96.94 E-value=0.012 Score=58.86 Aligned_cols=194 Identities=14% Similarity=0.157 Sum_probs=132.8
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch-------------hhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ-------------QTQVILNCSALMCLLHLIQSPKESIRKEACWAVS 190 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~-------------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 190 (379)
+...++.+|..+ ++-..+..++.-+..+++. ++|.++ ...+|.+.+.++......|..-..+++
T Consensus 816 ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHH
Confidence 455677777663 3445566666655544332 222222 367899999998777778888888889
Q ss_pred HhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCC---HHHH
Q psy664 191 NITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLD---AKII 267 (379)
Q Consensus 191 nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d---~~v~ 267 (379)
++..+.|.++-.---..++|.|++.|.-.|..+|-.+..+|.-++.....-.... -.-+++.++.+=.+.| .-+|
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~--~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH--LSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH--HhHHHHHHHhcCCCCCcchhHHH
Confidence 9777666633211123688999999999999999999999988764333211111 1235777877766655 4688
Q ss_pred HHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 268 QVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 268 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
..|+.+|..+.+.-+... .-+|...+ ++.|...++++..-|++.|.+.=++||.-
T Consensus 971 ~~ALqcL~aL~~~~P~~~-----l~~fr~~V-----l~al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKS-----LLSFRPLV-----LRALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred HHHHHHHHHHhccCCCcc-----cccccHHH-----HHHhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 899999999988544321 34455554 88899999999999999999998888753
No 157
>KOG4151|consensus
Probab=96.88 E-value=0.068 Score=52.85 Aligned_cols=210 Identities=16% Similarity=0.123 Sum_probs=145.0
Q ss_pred HHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHH-HhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHH
Q psy664 106 SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVG-NIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRK 183 (379)
Q Consensus 106 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~-nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~ 183 (379)
.+++......+...++.|+...|+.+.....+..+..+-.+|. .+.... +. -...++.+.+.+++.. ..=..
T Consensus 487 E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~--~~----~~~v~~~~~s~~~~d~~~~en~ 560 (748)
T KOG4151|consen 487 EYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG--ER----SYEVVKPLDSALHNDEKGLENF 560 (748)
T ss_pred HHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC--Cc----hhhhhhhhcchhhhhHHHHHHH
Confidence 3444333334445677899999999988777777777777776 222111 11 1134455555555443 23357
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHHhhccC
Q psy664 184 EACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ-QGCIEPFCELLTLL 262 (379)
Q Consensus 184 ~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~ 262 (379)
+++.++.|++..+....+.++..-.++.+-.++...++-.+..++..+.|+. .+..-....+.+ ...++.....+...
T Consensus 561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl-~~~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 561 EALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLL-WSPLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHH-hhHHHHHHHhhccccCchHHHHHHHhh
Confidence 8889999998888888888888888888888888889999999999999997 555444445555 34555555556666
Q ss_pred CHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHH-HHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 263 DAKIIQVALNGLENILKLGEEEAKQTGSVNPYVV-LIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 263 d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~-~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
+......++.++..|+...++. |. ..+-..|.+.+..+..+++++++.....++-+++..
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~----------c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENH----------CSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred hhHHhhhccccccchhhcchhh----------hhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 7777788888877777654433 44 566677889999999999999999887666665543
No 158
>KOG1248|consensus
Probab=96.87 E-value=0.1 Score=53.88 Aligned_cols=229 Identities=10% Similarity=0.009 Sum_probs=139.6
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChH--hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh-HHHHHHHhcCcHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFA--KVAPALACLSRLLFHADPDVLADACWAISYLSDGPN-EKIQAVIDAGVCR 126 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~ 126 (379)
+.+..++..+..+|..++... +..... ....+...|..-+++.+.-.+...+.+|..|....+ +....+. ..|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 447788999999999999883 222111 223455566666677777888888888887775544 3333332 2355
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhc-----CCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHH
Q psy664 127 RLVELLMHDQHKVVSAALRAVGNIVT-----GDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQ 201 (379)
Q Consensus 127 ~L~~lL~~~~~~i~~~al~~L~nl~~-----~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 201 (379)
.++=.+.+.+...++.|..+|-.|.. ..........-..+++.+...+-.....++...+-++..+.......+.
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld 821 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD 821 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555577788888888888877762 1111111111123455555555444444443335555555432222222
Q ss_pred HHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHc
Q psy664 202 AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 202 ~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 281 (379)
.-.-.+++..+.-.+.++.+++++.|+..+.-++..-........ ...+++.+..++++...+++..+-..|..++...
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 222225566666777889999999999999999854444333322 2236777777777777889988888888887654
Q ss_pred H
Q psy664 282 E 282 (379)
Q Consensus 282 ~ 282 (379)
.
T Consensus 901 g 901 (1176)
T KOG1248|consen 901 G 901 (1176)
T ss_pred C
Confidence 3
No 159
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.86 E-value=0.051 Score=47.24 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc-cCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHh
Q psy664 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT-LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEEC 301 (379)
Q Consensus 223 v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~ 301 (379)
....|+.+|.-++-- ++.....+.+...++.++++|. ...+.++..++.+|..++...+.. ...|++.
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N----------~r~FE~~ 175 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN----------QRDFEEL 175 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH----------HHHHHHh
Confidence 345566777766633 4455566778899999999994 467899999999999998876554 4689999
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCCcc
Q psy664 302 YGLDKIEFLQSHE--NIEIYQKAFDIIEHYFGSEEE 335 (379)
Q Consensus 302 g~l~~l~~l~~~~--~~~v~~~a~~il~~~~~~~~~ 335 (379)
+|++.+..+..+. +.+++-++...|.-|..++..
T Consensus 176 ~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~ 211 (257)
T PF08045_consen 176 NGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETP 211 (257)
T ss_pred CCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCC
Confidence 9999999999765 578999999999888876643
No 160
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.85 E-value=0.36 Score=45.09 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHhC-CC--CCCCChHhH-hhhHHHHHHhhcCCC---hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHH
Q psy664 54 SMVRNSVWVLSNLCR-GK--TPPPDFAKV-APALACLSRLLFHAD---PDVLADACWAISYLSDGPNEKIQAVIDAGVCR 126 (379)
Q Consensus 54 ~~~~~a~~~L~~l~~-~~--~~~~~~~~~-~~~l~~L~~lL~~~d---~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~ 126 (379)
.+.+....++..+.. .. ....+-... ..++..|...+++.. +.+...|+..+..+..+.+.....+.+.|+++
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 344455555566655 21 122222334 455666777777654 78999999999999988888999999999999
Q ss_pred HHHHhhc-C---CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC--hhhHH-HHHHHHHH----hhcC
Q psy664 127 RLVELLM-H---DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK--ESIRK-EACWAVSN----ITAG 195 (379)
Q Consensus 127 ~L~~lL~-~---~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~-~a~~~l~n----l~~~ 195 (379)
.+++.+. . ++.++....-.+++.||-+. .-.+.+.+.+.++.+.+++.+++ ...+. +.+..+++ |.++
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH 233 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRH 233 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHcc
Confidence 9999988 3 35666666667777777644 55566788899999999887654 11222 44545554 4456
Q ss_pred ChHHHHHHH
Q psy664 196 NRQQIQAVI 204 (379)
Q Consensus 196 ~~~~~~~~~ 204 (379)
.+.....++
T Consensus 234 ~p~Lk~~i~ 242 (379)
T PF06025_consen 234 HPSLKPDII 242 (379)
T ss_pred CHHHHHHHH
Confidence 655544443
No 161
>KOG2062|consensus
Probab=96.81 E-value=0.27 Score=48.43 Aligned_cols=90 Identities=22% Similarity=0.201 Sum_probs=64.4
Q ss_pred cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh-CcHHHHHHHHHHHHHHhcCC-CHHHHHHHHHcCCh
Q psy664 175 QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGG-TPDQIRYLIQQGCI 252 (379)
Q Consensus 175 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~-~~~~~~~l~~~~~i 252 (379)
.+.+.+||+.|..+|+-++..++++ .+..+.+|.. -++.||..++.+|+-.|+.. ..+. +
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA---------i 626 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA---------I 626 (929)
T ss_pred cccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH---------H
Confidence 4667999999999999988777764 4555666654 48999999999999888432 2222 2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 253 EPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 253 ~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
..|-.+..+...-||.-|+-++..|+....
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 333334445556789999999998876543
No 162
>KOG2274|consensus
Probab=96.77 E-value=0.55 Score=47.38 Aligned_cols=188 Identities=15% Similarity=0.158 Sum_probs=125.3
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 129 (379)
+..+.+...|+.+++..|+. ........+++..+.++......++..-...+|+..+.-+++.. ...+..+.|..+
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~---~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i 577 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKV---KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTI 577 (1005)
T ss_pred CCCCchhHHHHHHHHhccCc---eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHH
Confidence 44455556777777777732 33333456788888888887788888888999998887776544 356677888888
Q ss_pred Hhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 130 ELLM--HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK----ESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 130 ~lL~--~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
.++- ++++.+...+--++-.++.....+. -.....+|.+++.|..+. .....-|+-.|..+..+.+.-....
T Consensus 578 ~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g--~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~ 655 (1005)
T KOG2274|consen 578 NLFLKYSEDPQVASLAQDLFEELLQIAANYG--PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNL 655 (1005)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHH
Confidence 8754 4677777777777776664211111 112357899999997665 5566677777777666544333333
Q ss_pred HhcCchHHHHHH-HHhCcHHHHHHHHHHHHHHhcCCCHHHHH
Q psy664 204 IDANIFPSLIEI-LQKAEFKTRKEAAWAITNATSGGTPDQIR 244 (379)
Q Consensus 204 ~~~~~i~~Li~l-l~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 244 (379)
+-.-.+|.+.++ ++++|..+-..+..||..+++ .+.++..
T Consensus 656 l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is-~~~eq~~ 696 (1005)
T KOG2274|consen 656 LICYAFPAVAKITLHSDDHETLQNATECLRALIS-VTLEQLL 696 (1005)
T ss_pred HHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh-cCHHHHH
Confidence 333567777766 566788888899999998884 4444443
No 163
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.76 E-value=0.27 Score=44.58 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=120.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHh--cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC--Cchhh
Q psy664 83 LACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID--AGVCRRLVELLMHDQHKVVSAALRAVGNIVTG--DDQQT 158 (379)
Q Consensus 83 l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~--~~~~~ 158 (379)
+...+..+.......|..++..+..+..... ..+.+.+ ..++..+.+.++....+-+..|+++++-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3344444556678899999998887764422 1122211 24678888888887766677788888877643 22333
Q ss_pred HHHhhcCcHHHHHHhhcCCC--hhhHHHHHHHHHHhh---cCChHHHHHHHhcCchHHHHHH--HHh----------CcH
Q psy664 159 QVILNCSALMCLLHLIQSPK--ESIRKEACWAVSNIT---AGNRQQIQAVIDANIFPSLIEI--LQK----------AEF 221 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~nl~---~~~~~~~~~~~~~~~i~~Li~l--l~~----------~~~ 221 (379)
..+++ .+.|.|.+.+.... ..+|..++.+|+-++ ....+.+...++ .+..+... .+. +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44443 57888999987665 455666666666543 344444442222 22211111 111 124
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHH
Q psy664 222 KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 222 ~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 283 (379)
.+...|+.+-+-+++.-+...+....+ ..++.|..+|++.|.+||..|-.+|.-|++....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 577777666666554445544444333 3489999999999999999999999988877653
No 164
>KOG1248|consensus
Probab=96.74 E-value=0.43 Score=49.52 Aligned_cols=217 Identities=15% Similarity=0.157 Sum_probs=123.4
Q ss_pred cCCChHHHHHHHHHHHHhcCCChHHHHHHHhc--CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHH
Q psy664 91 FHADPDVLADACWAISYLSDGPNEKIQAVIDA--GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168 (379)
Q Consensus 91 ~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 168 (379)
++.+..+|..+-..|..++..++ ......+. .+...|..-+++.....+...+.+|..|....+.....++.. .++
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s-~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPS-GEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHH
Confidence 45578999999999998887632 22211111 234445555566677889999999999887655222222222 233
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcC------chHHHHHHHHhC----cHHHHHHHHHHHHHHhc--
Q psy664 169 CLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDAN------IFPSLIEILQKA----EFKTRKEAAWAITNATS-- 236 (379)
Q Consensus 169 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~------~i~~Li~ll~~~----~~~v~~~a~~~l~nl~~-- 236 (379)
-++-.++..+..-|+.|..+|-.|++ ++...+.| .+...+..+..+ ...+....+.++..+..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 33333366778888888888888873 22222222 333333333332 23332222444444431
Q ss_pred --CCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC
Q psy664 237 --GGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE 314 (379)
Q Consensus 237 --~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~ 314 (379)
..+.+.. .++++.++..|.++.+++++.|...+..++..-+..- ..++.+ -.+..+..+.+..
T Consensus 817 ~~~ld~~~l-----~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~-----l~~~~~-----~LL~sll~ls~d~ 881 (1176)
T KOG1248|consen 817 KNILDDETL-----EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC-----LSPHLE-----ELLPSLLALSHDH 881 (1176)
T ss_pred hccccHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH-----HhhhHH-----HHHHHHHHHHHhh
Confidence 1122222 2446777778889999999999999888877654331 111111 1255555565555
Q ss_pred CHHHHHHHHHHHHHh
Q psy664 315 NIEIYQKAFDIIEHY 329 (379)
Q Consensus 315 ~~~v~~~a~~il~~~ 329 (379)
...++.+...+++.+
T Consensus 882 k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 882 KIKVRKKVRLLLEKL 896 (1176)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566666666555544
No 165
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.74 E-value=0.47 Score=44.34 Aligned_cols=143 Identities=12% Similarity=0.199 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhhc---CCchhhHHHhh-cCcHHHHHHhhcCCC---hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHH
Q psy664 140 VSAALRAVGNIVT---GDDQQTQVILN-CSALMCLLHLIQSPK---ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSL 212 (379)
Q Consensus 140 ~~~al~~L~nl~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~---~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 212 (379)
.+..++.+..+.. +.......+++ ..++..|..++.+.. +.+-..|+.+++.+....|.....+.++|+++.+
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~ 156 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF 156 (379)
T ss_pred HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence 3445566666555 23334445666 566777888887765 7899999999999988899888999999999999
Q ss_pred HHHHH-hC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCH-------HHHHHHHHHHHHHHHHc
Q psy664 213 IEILQ-KA---EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDA-------KIIQVALNGLENILKLG 281 (379)
Q Consensus 213 i~ll~-~~---~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~-------~v~~~al~~L~~l~~~~ 281 (379)
++.+. .+ ..++....-.+|+.+|- +....+.+.+.+.++.+++++.+.+. +.-...=.++..++++.
T Consensus 157 L~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~ 234 (379)
T PF06025_consen 157 LDAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH 234 (379)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence 99888 43 45666656666666653 77888899999999999999877543 22223333455555555
Q ss_pred HHh
Q psy664 282 EEE 284 (379)
Q Consensus 282 ~~~ 284 (379)
+..
T Consensus 235 p~L 237 (379)
T PF06025_consen 235 PSL 237 (379)
T ss_pred HHH
Confidence 554
No 166
>KOG0414|consensus
Probab=96.68 E-value=0.025 Score=58.08 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=116.7
Q ss_pred HHHHHHhCCCCCCCChHhHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc-CC
Q psy664 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLF----HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM-HD 135 (379)
Q Consensus 61 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~ 135 (379)
-++..+|...=-....-......|.++...+ ..||+++..|.-+|+.+..-+.+... ..+|.|+..+. ++
T Consensus 899 d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp 973 (1251)
T KOG0414|consen 899 DLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSP 973 (1251)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCC
Confidence 4455555543112223355678888888884 46799999999999988755433322 35789999988 78
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHH
Q psy664 136 QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEI 215 (379)
Q Consensus 136 ~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~l 215 (379)
++.++.+++-++|.++..-+...+ -.-+.|..-|++.++.+|+.|..+++++...+ ++--.|.++.+..+
T Consensus 974 ~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~c 1043 (1251)
T KOG0414|consen 974 SPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALC 1043 (1251)
T ss_pred Cceeeecchheccchhhhcccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHH
Confidence 999999999999998865544433 24567889999999999999999999986432 23345999999999
Q ss_pred HHhCcHHHHHHHHHHHHHHh
Q psy664 216 LQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 216 l~~~~~~v~~~a~~~l~nl~ 235 (379)
+.+++.+++.-|=..+-.+.
T Consensus 1044 l~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1044 LEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hcCCcHHHHHHHHHHHHHhh
Confidence 99999888776665554444
No 167
>KOG1967|consensus
Probab=96.65 E-value=0.0079 Score=59.98 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=111.3
Q ss_pred hHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCC-ChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q psy664 32 VETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPP-DFAKVAPALACLSRLLFHADPDVLADACWAISYLS 109 (379)
Q Consensus 32 ~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~ 109 (379)
+|..+. ..++|.|++.. ..+.....+-.-+|++....- |.. -......++|.|.+.|.-+|..++..++.++.-+.
T Consensus 860 ykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 860 YKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH
Confidence 344443 45788888888 555666667777888877643 321 11234678999999999999999999999998776
Q ss_pred CCChHHHHHHHhcCcHHHHHHhhcCCC---hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHH
Q psy664 110 DGPNEKIQAVIDAGVCRRLVELLMHDQ---HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186 (379)
Q Consensus 110 ~~~~~~~~~~~~~g~i~~L~~lL~~~~---~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 186 (379)
...+.....-+ ..++|.++.+=.+++ ..++..|+.+|.-+....+...-.-....++..|.+.|.+++..||++|.
T Consensus 938 ~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 938 TESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred HhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 54433333333 247888888766554 56889999999999974443333334456788899999999999999999
Q ss_pred HHHHH
Q psy664 187 WAVSN 191 (379)
Q Consensus 187 ~~l~n 191 (379)
.+=.+
T Consensus 1017 ~tR~~ 1021 (1030)
T KOG1967|consen 1017 DTRQN 1021 (1030)
T ss_pred HHhhh
Confidence 77554
No 168
>KOG1943|consensus
Probab=96.63 E-value=0.25 Score=50.63 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=137.6
Q ss_pred HhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCc
Q psy664 77 AKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD-QHKVVSAALRAVGNIVTGDD 155 (379)
Q Consensus 77 ~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~i~~~al~~L~nl~~~~~ 155 (379)
.....++..|...+++.|..++..|+..++.++...+ ..+...++..+++++..- ++..-..++-+|+.++...-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp----~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP----PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc----HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 3456788889999999999999999999999997765 122234677777766553 35556679999998885321
Q ss_pred hhhHHHhhcCcHHHHHHhhcCC--------ChhhHHHHHHHHHHhhcC-ChHHHHHHHhcCchHHHHHHHHhCcHHHHHH
Q psy664 156 QQTQVILNCSALMCLLHLIQSP--------KESIRKEACWAVSNITAG-NRQQIQAVIDANIFPSLIEILQKAEFKTRKE 226 (379)
Q Consensus 156 ~~~~~~~~~~~l~~L~~lL~~~--------~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~ 226 (379)
-....+ ..++|.+.+-++.. ...||..||.+++.++.+ ++..+..+++.=.-..|+..+-+.+...|+.
T Consensus 413 Llps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 413 LLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred cchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 111111 24677777776432 368999999999988764 3444444443222223445556678889999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCH---HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhcc
Q psy664 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDA---KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYG 303 (379)
Q Consensus 227 a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~ 303 (379)
|..|+...+-. . |-.+.=+++....|. ..+.++-..++.-+.. .+.|+..+
T Consensus 491 AsAAlqE~VGR-~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~----------~~~y~~~~----- 544 (1133)
T KOG1943|consen 491 ASAALQENVGR-Q----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAE----------FSGYREPV----- 544 (1133)
T ss_pred HHHHHHHHhcc-C----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHh----------hhhHHHHH-----
Confidence 99999876632 1 112222223333332 2333433333333322 22233333
Q ss_pred HHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 304 LDKIEFL-QSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 304 l~~l~~l-~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
++.+..- ..|=+..+++.|...|.++...+.
T Consensus 545 f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 545 FNHLLTKKVCHWDVKIRELAAYALHKLSLTEP 576 (1133)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence 3333222 567789999999999998655544
No 169
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.61 E-value=0.16 Score=45.99 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=83.8
Q ss_pred CcHHHHH-HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-CChHHH
Q psy664 123 GVCRRLV-ELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQI 200 (379)
Q Consensus 123 g~i~~L~-~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~ 200 (379)
+.+..++ ..++++++.+++.++.+||-++.-+..... ..++.+...++..+..++..|+.++..+.. +..+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4454444 678899999999999999998876554433 346778888877789999999999999754 333333
Q ss_pred HHHH-------hcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 201 QAVI-------DANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 201 ~~~~-------~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
.... ...++..+.+.+.+.+++++..|+..++.+...+
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 3222 2367888889999999999999999999988654
No 170
>KOG2025|consensus
Probab=96.56 E-value=0.82 Score=45.06 Aligned_cols=130 Identities=19% Similarity=0.156 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh
Q psy664 53 LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL 132 (379)
Q Consensus 53 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL 132 (379)
..+.+-++..+..+-.. .+......+.+..+++...+++..|+..+|..|..+.+... .++..+-.+....+..-+
T Consensus 60 dRIl~fla~fv~sl~q~---d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl 135 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQL---DKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRL 135 (892)
T ss_pred HHHHHHHHHHHHhhhcc---CchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHH
Confidence 44555555555555433 23344678888889999999999999999999999997543 344445557788888888
Q ss_pred cCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC-CChhhHHHHHHHHHH
Q psy664 133 MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS-PKESIRKEACWAVSN 191 (379)
Q Consensus 133 ~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~n 191 (379)
.+..+.++..|+.+|+.+-..+ .. -+..+...+..++++ ++++||+.|...|.+
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~-~d----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDP-KD----EECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCC-CC----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 8899999999999999987321 11 123456777888865 469999998755543
No 171
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=96.51 E-value=0.66 Score=42.61 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=117.5
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhc-CChHHHHHHHhc-Cc-hHHHHHHHHhC-----c--------HHHHHHHHHH
Q psy664 167 LMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQIQAVIDA-NI-FPSLIEILQKA-----E--------FKTRKEAAWA 230 (379)
Q Consensus 167 l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~-~~-i~~Li~ll~~~-----~--------~~v~~~a~~~ 230 (379)
+..+.+.|...+..+...+...+..|+. ........+... ++ .+.+-+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888888888888899999999887 666666666655 22 23344444321 1 2899999998
Q ss_pred HHHHhcCCCHHHHHHHHH-cCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHH
Q psy664 231 ITNATSGGTPDQIRYLIQ-QGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEF 309 (379)
Q Consensus 231 l~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~ 309 (379)
+..++..+++.....+.+ .+.+..+..-|..++++++..++.+|..=+-..+... ......+-....+.+|..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~------r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVS------RSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCC------hhhhhhhcCHHHHHHHHH
Confidence 888888888888777665 5778888888988888999999999885433333221 122334445667888988
Q ss_pred hhcCCCH----HHHHHHHHHHHHhcCCC
Q psy664 310 LQSHENI----EIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 310 l~~~~~~----~v~~~a~~il~~~~~~~ 333 (379)
+-+.+++ .+.+.+..++..++.+-
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 8888777 99999999999998743
No 172
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.83 Score=45.29 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=73.8
Q ss_pred hCCChHHHHhcC------CCChhH---HHHHHHHHHHHhC--CCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q psy664 38 DNNILYPLIDKP------KNRLSM---VRNSVWVLSNLCR--GKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAIS 106 (379)
Q Consensus 38 ~~g~i~~Ll~lL------~~~~~~---~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~ 106 (379)
-.|+++.++..| +++... ..-|.+.++++.. .+.....-+...-+++.++..++++.--++..||..++
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 367888888888 222122 2356666666655 33223333344456777777788888889999999999
Q ss_pred HhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCC
Q psy664 107 YLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 107 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~ 154 (379)
.+..+ ..+..+-..+.+....++++++-.++..|.-++.-+..+.
T Consensus 486 ~~eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 486 TIEED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 88533 2222333456777788888888888888888887766543
No 173
>KOG1020|consensus
Probab=96.50 E-value=0.1 Score=55.24 Aligned_cols=164 Identities=15% Similarity=0.088 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC
Q psy664 56 VRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD 135 (379)
Q Consensus 56 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~ 135 (379)
..++.|+...++....-. ....+.+..++..+..+-..+|..|+.||+.+...++... ....+-..+..-+.+.
T Consensus 794 ~~~a~li~~~la~~r~f~---~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFS---QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDS 867 (1692)
T ss_pred chhHHHHHHHHHhhhHHH---HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccc
Confidence 447888888888765221 1235678888888998889999999999999997765321 2223344455566778
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHH
Q psy664 136 QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEI 215 (379)
Q Consensus 136 ~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~l 215 (379)
...|+++|+..+|......++...... ..+..-+.+....||+.+...+.-+|...|+.-. +...+.++
T Consensus 868 sasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakm 936 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKM 936 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHH
Confidence 899999999999988766655554333 4466666777799999999999999987665322 23334455
Q ss_pred HHh---CcHHHHHHHHHHHHHHhc
Q psy664 216 LQK---AEFKTRKEAAWAITNATS 236 (379)
Q Consensus 216 l~~---~~~~v~~~a~~~l~nl~~ 236 (379)
+.. .+..+++-++.++.++.-
T Consensus 937 lrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 937 LRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHhccchhHHHHHHHHHHHHHhc
Confidence 543 344488889999988864
No 174
>KOG1243|consensus
Probab=96.49 E-value=0.022 Score=55.47 Aligned_cols=192 Identities=11% Similarity=0.125 Sum_probs=137.2
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh
Q psy664 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~ 157 (379)
...+++|.+++++...|..+|...+.-+-....+- .+.+++..+.|.+..-+.+.++.+++.++.++..++..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 45679999999999999999988877776555442 2446777899999999999999999999999998885322
Q ss_pred hHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCch-HHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 158 TQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIF-PSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i-~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
...+....+.++.++-.+.+..+|....-+++-++...... ...+++ ....+-+.+.-...|+.+.+++.....
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred -hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 22445566777777777667889999998888886442221 123333 334445666666778888888887543
Q ss_pred CCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHH
Q psy664 237 GGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 237 ~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 283 (379)
.-.... +...+++.++.+..+.+..++..+..++.......++
T Consensus 477 ~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 477 YFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred ccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 222111 2356788888888888999999988888777665443
No 175
>KOG3036|consensus
Probab=96.48 E-value=0.35 Score=41.35 Aligned_cols=146 Identities=15% Similarity=0.021 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH
Q psy664 180 SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-----EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEP 254 (379)
Q Consensus 180 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-----~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~ 254 (379)
.-|..-+.++-...++.++....++++.+--.+...|... ..-.|-.++++|+.++..++.+.+.++...++++.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3343333444444466777788888887766677777653 45689999999999999999999999999999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHH-----HHhhcCCCHHHHHHHHHHHHHh
Q psy664 255 FCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKI-----EFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 255 L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l-----~~l~~~~~~~v~~~a~~il~~~ 329 (379)
.+..++.+...-+..|...+..|+-...... -+|+..+....+..+ .++.+.++..+-+.+..+.-++
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~-------YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLY-------YICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRL 245 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHH-------HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 9999999988888889999998887655432 245555444433322 4566788888887777776666
Q ss_pred cCC
Q psy664 330 FGS 332 (379)
Q Consensus 330 ~~~ 332 (379)
.+.
T Consensus 246 sdn 248 (293)
T KOG3036|consen 246 SDN 248 (293)
T ss_pred cCC
Confidence 543
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.39 E-value=0.028 Score=50.87 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=84.5
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHH-
Q psy664 170 LLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ- 248 (379)
Q Consensus 170 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~- 248 (379)
+...+++.++.+|+.|..+++-.+--+.+... ..++.+.+.++.++..++..|+.++..++..+..........
T Consensus 32 I~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 32 ILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 33677888999999999999988766654433 346777888888899999999999999887655444333322
Q ss_pred ------cCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 249 ------QGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 249 ------~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
..+++.+.+.+.+.+++++..++.+++.++-.+.
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 4567788888999999999999999999987764
No 177
>KOG1020|consensus
Probab=96.34 E-value=0.066 Score=56.52 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC
Q psy664 97 VLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS 176 (379)
Q Consensus 97 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 176 (379)
-..++.|+..+++.+.+ ..+. + .+++..++..|..+...++..|++||++++..++.. +....+...+..-+.+
T Consensus 793 d~~~a~li~~~la~~r~-f~~s-f-D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS-FSQS-F-DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLND 866 (1692)
T ss_pred cchhHHHHHHHHHhhhH-HHHh-h-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhcc
Confidence 34677888888886653 1111 1 257899999999999999999999999999866543 2233444556667777
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q psy664 177 PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFC 256 (379)
Q Consensus 177 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~ 256 (379)
....||+.|+..++......++.+.+.. ..+..-..+....||+.+...+..+|. ..++. ..+ .+...
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~-e~pdf-~~i-----~~~ca 934 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICE-ETPDF-SKI-----VDMCA 934 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHH-hCCCh-hhH-----HHHHH
Confidence 7899999999999998777777665433 344554555677899999999999884 33221 111 22222
Q ss_pred Hhh---ccCCHHHHHHHHHHHHHHHHH
Q psy664 257 ELL---TLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 257 ~lL---~~~d~~v~~~al~~L~~l~~~ 280 (379)
.++ .+++..+++-++.++.++...
T Consensus 935 kmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 935 KMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 333 233334777777777776543
No 178
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.33 E-value=0.0063 Score=34.20 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.9
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhcC
Q psy664 82 ALACLSRLLFHADPDVLADACWAISYLSD 110 (379)
Q Consensus 82 ~l~~L~~lL~~~d~~v~~~a~~aL~~l~~ 110 (379)
++|.+.+++++++++||..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999874
No 179
>KOG2032|consensus
Probab=96.32 E-value=0.99 Score=42.60 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=83.3
Q ss_pred HHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc-CCCh
Q psy664 59 SVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM-HDQH 137 (379)
Q Consensus 59 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~ 137 (379)
-+..++.+...+ ...+.......+..+..-..+++..++..|+..|++.+++.++....... ..+..++.-|. ..+.
T Consensus 237 d~Af~ael~~~~-~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~ 314 (533)
T KOG2032|consen 237 DIAFFAELKRPK-ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNE 314 (533)
T ss_pred HHHHHHHHhCcc-cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCcc
Confidence 333444444433 33334445566666666666788899999999999999885544443333 34555555544 4578
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhcCcHH---HHHHhhcCCChhhHHHHHHHHHHhhc
Q psy664 138 KVVSAALRAVGNIVTGDDQQTQVILNCSALM---CLLHLIQSPKESIRKEACWAVSNITA 194 (379)
Q Consensus 138 ~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~---~L~~lL~~~~~~v~~~a~~~l~nl~~ 194 (379)
+++-.++.+|..+...-. ..-+...+++ .+..+..+.+++.|..|..+++.++.
T Consensus 315 ~V~leam~~Lt~v~~~~~---~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 315 EVQLEAMKCLTMVLEKAS---NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHHHHHHHHHHHhhh---hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 899999999987763211 1111223333 45566788889999999999988764
No 180
>KOG2062|consensus
Probab=96.32 E-value=0.087 Score=51.71 Aligned_cols=136 Identities=22% Similarity=0.236 Sum_probs=96.5
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHH--HhcCCChHHHHHHHhcCcHHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchh
Q psy664 81 PALACLSRLLFHADPDVLADACWAIS--YLSDGPNEKIQAVIDAGVCRRLVEL-LMHDQHKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~--~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~i~~~al~~L~nl~~~~~~~ 157 (379)
++=|.+-+++.+.|+-+|.....++. +...++ .+++..|++. +.+.+.++++.|+-+||-++..++++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 44566677788888888877766554 333332 2467778887 66789999999999999998776554
Q ss_pred hHHHhhcCcHHHHHHhh-cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 158 TQVILNCSALMCLLHLI-QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
+|..+++| .+-++.||.-|+.+++-.|++.... ..+..|-.++.+...-||+.|+.+++-+..
T Consensus 590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 45566666 4557999999999999988865421 123333344556667889999999988876
Q ss_pred CCCHH
Q psy664 237 GGTPD 241 (379)
Q Consensus 237 ~~~~~ 241 (379)
..++.
T Consensus 654 Q~t~~ 658 (929)
T KOG2062|consen 654 QQTEQ 658 (929)
T ss_pred hcccc
Confidence 55543
No 181
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.30 E-value=0.039 Score=37.91 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Q psy664 182 RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPDQIRYLIQQGC 251 (379)
Q Consensus 182 ~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~ 251 (379)
.+.|.|+++++.+ ++..+..+.+.++++.++++..+. -..+|.-|.++|+-+ +.+.+..+.+.+.|-
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lgli--s~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLI--SSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHH--hCCHHHHHHHHHcCC
Confidence 5789999999954 566677777789999999998865 567888888888877 567787777776653
No 182
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.25 E-value=0.044 Score=44.33 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=98.9
Q ss_pred HHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q psy664 127 RLVELLM--HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVI 204 (379)
Q Consensus 127 ~L~~lL~--~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 204 (379)
.++..|. ...++++..+.-++..+. +...+ -...-+-+.+..++...+.+-...++.+++.+--+.++....++
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444 356678888888888774 22222 22334456666777666667788888888888778888777665
Q ss_pred -hcCchHHHHHHHH--hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHH-HHHHHHHHHHH
Q psy664 205 -DANIFPSLIEILQ--KAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAK-IIQVALNGLEN 276 (379)
Q Consensus 205 -~~~~i~~Li~ll~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~-v~~~al~~L~~ 276 (379)
..|+++.+..++. ..+..++..++.+|...| .+...+.. +...+++.|-.+++. ++.. ++..|+-+|..
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc--~d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAAC--IDKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT--TSHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH--ccHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6699999999999 778999999999999865 34444444 444568999999954 5555 77777777654
No 183
>KOG1243|consensus
Probab=96.23 E-value=0.026 Score=54.99 Aligned_cols=231 Identities=12% Similarity=0.089 Sum_probs=148.5
Q ss_pred CChHhHhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhh
Q psy664 74 PDFAKVAPALACLSRLLFHAD--PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151 (379)
Q Consensus 74 ~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~ 151 (379)
+..+....++|.|...+...+ .++..... .++...+..+ ++.+++|.|++++..++..+|..-+.-+-+..
T Consensus 286 pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~-k~~k~ld~~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i 358 (690)
T KOG1243|consen 286 PEEIIASKVLPILLAALEFGDAASDFLTPLF-KLGKDLDEEE------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI 358 (690)
T ss_pred hHHHHHHHHHHHHHHHhhccccchhhhhHHH-Hhhhhccccc------cccchhhhHHHHhcCcchHHHHHHHHhHHHHh
Confidence 444455667777776666554 22222222 2222222211 55679999999999999999988777666655
Q ss_pred cCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHH
Q psy664 152 TGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAI 231 (379)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l 231 (379)
+...+..++..++|.+...+.+.++.+|+.++.++.-++..-.+ ..++..++..+.++-.+.+..+|.....++
T Consensus 359 ---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~---~~Ln~Ellr~~ar~q~d~~~~irtntticl 432 (690)
T KOG1243|consen 359 ---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK---RNLNGELLRYLARLQPDEHGGIRTNTTICL 432 (690)
T ss_pred ---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---hhhcHHHHHHHHhhCccccCcccccceeee
Confidence 34556677888999999999999999999999999888642221 133444555555555555677888888888
Q ss_pred HHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh
Q psy664 232 TNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ 311 (379)
Q Consensus 232 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~ 311 (379)
+.+...-.+.. .+.-....+..-+.+.-..-+....+++......-+.. ..+. .++..+.-+.
T Consensus 433 gki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--------~va~-----kIlp~l~pl~ 495 (690)
T KOG1243|consen 433 GKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--------EVAN-----KILPSLVPLT 495 (690)
T ss_pred cccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh--------hhhh-----hccccccccc
Confidence 88642222221 22233445556566655567777777766544433221 1222 2367777788
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCc
Q psy664 312 SHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 312 ~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
-+++..++..|...++.|++..+
T Consensus 496 vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 496 VDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred cCcccchhhHHHHHHHHHHhhhh
Confidence 88899999999999998887644
No 184
>KOG1078|consensus
Probab=96.20 E-value=0.49 Score=47.00 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=52.5
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCC
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~ 154 (379)
...+.+-.++.+....+...|+.++.++....+.... -.+..|--++.+++..++..|.++|..++...
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 4556666777788899999999999888765432221 16777777888999999999999999888643
No 185
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.19 E-value=0.027 Score=38.70 Aligned_cols=67 Identities=21% Similarity=0.157 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhc
Q psy664 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECY 302 (379)
Q Consensus 224 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g 302 (379)
.|.|+|+++++. .++..+..+.+.++++.++++... +-..+|-.+..+|+-+....+ -++.+.+.|
T Consensus 4 lKaaLWaighIg--ss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-----------G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIG--SSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-----------GAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHh--cChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-----------HHHHHHHcC
Confidence 578999999984 477788888888999999999876 445888889998888776433 356777777
Q ss_pred c
Q psy664 303 G 303 (379)
Q Consensus 303 ~ 303 (379)
+
T Consensus 71 W 71 (73)
T PF14668_consen 71 W 71 (73)
T ss_pred C
Confidence 5
No 186
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.14 E-value=0.8 Score=39.81 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=120.8
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHhh-cCcHHHHHHh-------hcCCC--hhhHHHHHHHHH---HhhcCChHHHHH
Q psy664 136 QHKVVSAALRAVGNIVTGDDQQTQVILN-CSALMCLLHL-------IQSPK--ESIRKEACWAVS---NITAGNRQQIQA 202 (379)
Q Consensus 136 ~~~i~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~l-------L~~~~--~~v~~~a~~~l~---nl~~~~~~~~~~ 202 (379)
+++.++.|+.-|+.--...+.....+.. .|.+..|++= +..+. ...-..+|.++. .+ +..++....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~v-Ashpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCV-ASHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHH-HH-TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHH-HcChHHHHH
Confidence 5566777777777554433444433433 3555544432 22222 222233444443 34 357778888
Q ss_pred HHhcCchHHHHHHHHhCc-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 203 VIDANIFPSLIEILQKAE-----FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 203 ~~~~~~i~~Li~ll~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
++++++.-.|.-.|+..+ ..+|-.+.++++.++...+++.+.++.+.++++.....|+.++.--+..|...+..|
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999988777777776542 567899999999999888999999999999999999999998888888899999999
Q ss_pred HHHcHHhhhhcCCcchHHHHHHHhccHHHH-HHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 278 LKLGEEEAKQTGSVNPYVVLIEECYGLDKI-EFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l-~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
+........-+...+.|... ...+.++ ..+...+++++-+.....-.++.+...
T Consensus 167 L~dd~GL~yiC~t~eRf~av---~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAV---AMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHH---HHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HcchhHHHHHhcCHHHHHHH---HHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 98766543211111122111 1223333 556778888888887777777776543
No 187
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.13 E-value=0.031 Score=46.62 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=83.2
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCCh---------------HhHhhhHHHHHHhhcC------CChHHHHHHHHHHHHh
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDF---------------AKVAPALACLSRLLFH------ADPDVLADACWAISYL 108 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~---------------~~~~~~l~~L~~lL~~------~d~~v~~~a~~aL~~l 108 (379)
+........++.+|+|+++.+...... ......+..|+.++-. +..+-.......|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 334455667888888888865322111 1223466677766544 2356677888999999
Q ss_pred cCCChHHHHHHHhc--Cc--HHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhh---cCcHHHHHHhhc
Q psy664 109 SDGPNEKIQAVIDA--GV--CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILN---CSALMCLLHLIQ 175 (379)
Q Consensus 109 ~~~~~~~~~~~~~~--g~--i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~---~~~l~~L~~lL~ 175 (379)
+..+ +.++.+++. +. +..|+.++++.+..-+.-++.+|.|+|...+.. ..++. .+++|+|+--|.
T Consensus 86 S~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLP-EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCH-HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 9876 688888876 44 889999999997777778999999999766544 44444 255665554443
No 188
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.10 E-value=0.0099 Score=33.39 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.7
Q ss_pred cHHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy664 166 ALMCLLHLIQSPKESIRKEACWAVSNITA 194 (379)
Q Consensus 166 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 194 (379)
++|.+.+++++++++||..|+++++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999874
No 189
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=1.4 Score=43.79 Aligned_cols=116 Identities=10% Similarity=0.026 Sum_probs=79.4
Q ss_pred hHhhhHHHHHHhhcC--------CChHHHHHHHHHHHHhcC--CChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 78 KVAPALACLSRLLFH--------ADPDVLADACWAISYLSD--GPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~--------~d~~v~~~a~~aL~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
-..|+++.++..|.. ++..-.+.|++.++++.+ ..+....-+++.=+++.++..++++.--++..||..+
T Consensus 405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~i 484 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHH
Confidence 357899999998831 224455677777777664 2222333355555678888888999888999999999
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGN 196 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 196 (379)
+.+..+ ..+..+-..+.....+.+.+.+-.++.+|+-++.-+..+.
T Consensus 485 s~~eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 485 STIEED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 988432 2222222344566777788877889999999999876554
No 190
>KOG4653|consensus
Probab=96.04 E-value=0.59 Score=46.98 Aligned_cols=219 Identities=13% Similarity=0.093 Sum_probs=133.6
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 129 (379)
++-..++..+...++.+.+.. .....+...+++......|++.|+-+--.|+..+..||+-.+ ..++|.+.
T Consensus 738 d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~ 808 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLS 808 (982)
T ss_pred CCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHH
Confidence 556778888999999999866 455666778999999999999999999999998888886533 34566676
Q ss_pred Hh-hcCC---ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy664 130 EL-LMHD---QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205 (379)
Q Consensus 130 ~l-L~~~---~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 205 (379)
+. .+.. ..+.+-..-.++.+++..-.+....... -++..+++..+.++...|..++..++++|.-..-+....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~- 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF- 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-
Confidence 63 3321 1233333335555555433332222222 3556677777877778899999999998753332222211
Q ss_pred cCchHHHHHHHH-hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCChHHHHHhhcc-CCHHHHHHHHHHHHHHHH
Q psy664 206 ANIFPSLIEILQ-KAEFKTRKEAAWAITNATSGGTPDQIRYLIQ--QGCIEPFCELLTL-LDAKIIQVALNGLENILK 279 (379)
Q Consensus 206 ~~~i~~Li~ll~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~--~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~ 279 (379)
+.++..++.+.. ++.+.+|+.|+..+..+..+-..+....+.. .+....+...... .|..++..+..++..+-.
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 123444444444 3568899999999999884333333332211 1223333333333 344555556555554433
No 191
>KOG4653|consensus
Probab=96.02 E-value=0.52 Score=47.32 Aligned_cols=228 Identities=12% Similarity=0.052 Sum_probs=139.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHh
Q psy664 83 LACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162 (379)
Q Consensus 83 l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~ 162 (379)
+......+.++-.-++..++..++.+.... +....+...+++...+..|++.++-+--.|++.+..+|. +.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce--------vy 799 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE--------VY 799 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH--------hc
Confidence 334444455666788999999999998765 455667778999999999999999998899997777773 24
Q ss_pred hcCcHHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 163 NCSALMCLLHLIQSPK----ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 163 ~~~~l~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
...++|-+.....+.+ ++.+-.+-.++.+++..-.+....-.+ -++...+..+.++|...|..++..++++|...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 5567787877543322 345555567777765433333332222 45555666666667777999999999988422
Q ss_pred CHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh-cCCCH
Q psy664 239 TPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ-SHENI 316 (379)
Q Consensus 239 ~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~-~~~~~ 316 (379)
....-..+.+ ++..++.+... +.+.+++.|...+..++..-+.. .-++.... -....+.+..+. .|+++
T Consensus 879 a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d------lLpilr~~-l~Dl~~tl~~~vr~~~dd 949 (982)
T KOG4653|consen 879 AFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED------LLPILRLL-LIDLDETLLSYVRQHDDD 949 (982)
T ss_pred hhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh------hHHHHHHH-HHHHHHHHHHHHhcCchh
Confidence 2111112222 35555555554 45688999999888887744322 11111111 122234444433 45555
Q ss_pred HHHHHHHHHHHHh
Q psy664 317 EIYQKAFDIIEHY 329 (379)
Q Consensus 317 ~v~~~a~~il~~~ 329 (379)
.++..|...++.+
T Consensus 950 ~~klhaql~leei 962 (982)
T KOG4653|consen 950 GLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHHHH
Confidence 5666555555443
No 192
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.99 E-value=0.69 Score=47.19 Aligned_cols=199 Identities=14% Similarity=0.237 Sum_probs=119.4
Q ss_pred hhhhhhCCChHHHHhhcCCCCCCccc----------------CchhHHHHHhCCChHHHHhcC-----CCC----hhHHH
Q psy664 3 TRMVIDAGAVPVFIQLLLSPHEDQVT----------------HPSVETMSLDNNILYPLIDKP-----KNR----LSMVR 57 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~~~~v~~----------------~~~~r~~i~~~g~i~~Ll~lL-----~~~----~~~~~ 57 (379)
+..+.+.|++..++.++.+-..-.+. .+.+|..+++.|+++.|++.+ ... ..+..
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 45677899999999999874421111 689999999999999999888 222 34444
Q ss_pred HHHHHHHHHhCCCCCCCC--------hH----hHhhhHHHHHHhhcCC----ChHHHHHHHHHHHHhcCCChHHHHHHHh
Q psy664 58 NSVWVLSNLCRGKTPPPD--------FA----KVAPALACLSRLLFHA----DPDVLADACWAISYLSDGPNEKIQAVID 121 (379)
Q Consensus 58 ~a~~~L~~l~~~~~~~~~--------~~----~~~~~l~~L~~lL~~~----d~~v~~~a~~aL~~l~~~~~~~~~~~~~ 121 (379)
...-++-.+....+.... .. ....-+..|++.+.+. ++.+....+++|-+|+.+..+..+.+++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 444444433332211000 00 1234466677666643 5899999999999999999888887665
Q ss_pred cCcHHHHHHh--hcC---CChHHHHHHHHHHHHhhcCC------chhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHH
Q psy664 122 AGVCRRLVEL--LMH---DQHKVVSAALRAVGNIVTGD------DQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVS 190 (379)
Q Consensus 122 ~g~i~~L~~l--L~~---~~~~i~~~al~~L~nl~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 190 (379)
. ....+++ ++. ++. ...+.+++.++.+- ...++.+++.|++....+.|...-+.. .
T Consensus 270 ~--F~p~l~f~~~D~~~~~~~---~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~--------~ 336 (802)
T PF13764_consen 270 H--FKPYLDFDKFDEEHSPDE---QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL--------K 336 (802)
T ss_pred H--HHHhcChhhcccccCchH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc--------c
Confidence 3 2222222 111 122 23356666665432 245577888888887777775443332 1
Q ss_pred HhhcCChHHHHHHHhcCchHHHHHHHH
Q psy664 191 NITAGNRQQIQAVIDANIFPSLIEILQ 217 (379)
Q Consensus 191 nl~~~~~~~~~~~~~~~~i~~Li~ll~ 217 (379)
+. .+++ -...+....+|.++++|.
T Consensus 337 ~~--~s~e-Wk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 337 NT--DSPE-WKEFLSRPSLPYILRLLR 360 (802)
T ss_pred cC--CCHH-HHHHhcCCcHHHHHHHHH
Confidence 11 2333 334445566677666664
No 193
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.90 E-value=0.14 Score=49.70 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=70.2
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q psy664 177 PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFC 256 (379)
Q Consensus 177 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~ 256 (379)
.+...++-|+..|.......|+.... .+..++++..+.|..||+.|+..|-.+| ..+++.+..+ ...|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~c-k~~~~~v~kv-----aDvL~ 102 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLC-KDNPEHVSKV-----ADVLV 102 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG---T--T-HHHH-----HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHH-HhHHHHHhHH-----HHHHH
Confidence 46889999999999988888876554 4568899999999999999999999998 6666766654 67899
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 257 ELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 257 ~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
.+|.++|+.-...+-.+|..++...+..
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~ 130 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKG 130 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHH
Confidence 9999999877777778888888776654
No 194
>KOG2032|consensus
Probab=95.88 E-value=0.64 Score=43.80 Aligned_cols=112 Identities=15% Similarity=0.174 Sum_probs=74.7
Q ss_pred hCCChHHHHhcC-----CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCC
Q psy664 38 DNNILYPLIDKP-----KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDG 111 (379)
Q Consensus 38 ~~g~i~~Ll~lL-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~ 111 (379)
+.|.+..++..+ +++...++.|+..|.|.+.+- |....-....++..++.-|. ..+.+|+..+..+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 456666555555 556778889999999999983 33333334456666665554 44589999999998877743
Q ss_pred ChH--HHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 112 PNE--KIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 112 ~~~--~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
-.. ....+ -.+.-.+..+..+.+++++..|...++.++.
T Consensus 331 ~~~~~l~~~~--l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 331 ASNDDLESYL--LNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred hhhcchhhhc--hhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 211 11111 1345566677888999999999988888774
No 195
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.82 E-value=0.13 Score=41.51 Aligned_cols=145 Identities=19% Similarity=0.115 Sum_probs=97.0
Q ss_pred HHHHHHhhc--CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHH
Q psy664 167 LMCLLHLIQ--SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244 (379)
Q Consensus 167 l~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 244 (379)
++.+++.|. ...+++|..|.-++..+. +....-...-+-+.+-..+..++.+-...++.++..+. .+.++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l----~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lf-p~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL----DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALF-PGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHC-TTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHh-CCCHHHHH
Confidence 444555554 356889999999998874 22222222223344445555556667778899999987 77777777
Q ss_pred HHH-HcCChHHHHHhhc--cCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh-cCCCHH-HH
Q psy664 245 YLI-QQGCIEPFCELLT--LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ-SHENIE-IY 319 (379)
Q Consensus 245 ~l~-~~~~i~~L~~lL~--~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~-~~~~~~-v~ 319 (379)
.+. ..|+.+.+..++. .++..++..++.+|..-+... -+.......+++.|+.+. +++++. ++
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~------------~~r~~I~~~~~~~L~~~~~~~~~~~~ir 147 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK------------SCRTFISKNYVSWLKELYKNSKDDSEIR 147 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH------------HHHHCCHHHCHHHHHHHTTTCC-HH-CH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH------------HHHHHHHHHHHHHHHHHHccccchHHHH
Confidence 765 6799999999998 788899999988877655322 234444566789999888 466666 77
Q ss_pred HHHHHHHHH
Q psy664 320 QKAFDIIEH 328 (379)
Q Consensus 320 ~~a~~il~~ 328 (379)
-.|.-+|-+
T Consensus 148 ~~A~v~L~K 156 (157)
T PF11701_consen 148 VLAAVGLCK 156 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777766543
No 196
>KOG2956|consensus
Probab=95.79 E-value=1.1 Score=41.98 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=105.4
Q ss_pred hhHHHHHHH-HHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHHHHhc--CcHHHH
Q psy664 53 LSMVRNSVW-VLSNLCRGKTPPPDFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQAVIDA--GVCRRL 128 (379)
Q Consensus 53 ~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~--g~i~~L 128 (379)
.+-+..|.. +..-+|.+. ..........++-.+++.|.+ .+..++..|++.|..++.+.+.. +.+. -++..+
T Consensus 301 a~~~k~alsel~~m~~e~s-fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~---l~DstE~ai~K~ 376 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGS-FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR---LFDSTEIAICKV 376 (516)
T ss_pred hhHHHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh---hhchHHHHHHHH
Confidence 334445555 444555553 444444556788888888887 77889999999999999775433 2222 346666
Q ss_pred HHhhcCCChHHHHHHH-HHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhc
Q psy664 129 VELLMHDQHKVVSAAL-RAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR-QQIQAVIDA 206 (379)
Q Consensus 129 ~~lL~~~~~~i~~~al-~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~ 206 (379)
++.-.+..+.+...|. .++.-+++..+...- ..+..++...+...-..++..+..+...-+ +..-.++ .
T Consensus 377 Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I--------~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~ 447 (516)
T KOG2956|consen 377 LEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI--------VNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-P 447 (516)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHhhCchhHH--------HHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-h
Confidence 6666666555554444 344445555444332 224444444555555555555566554322 2222222 3
Q ss_pred CchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 207 NIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 207 ~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
.+.|.+++.-.+.+..|||.|++||..+..
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 788999999999999999999999998763
No 197
>KOG0414|consensus
Probab=95.78 E-value=0.11 Score=53.72 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=107.3
Q ss_pred cHHHHHHhhc----CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc-CCChhhHHHHHHHHHHhhcCChH
Q psy664 124 VCRRLVELLM----HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ-SPKESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 124 ~i~~L~~lL~----~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~ 198 (379)
+.|.++...+ ..++.++.+|--+|+.+..-+..... ..+|.|...|. ++++.||..+.-+++.++-..+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4555666654 35899999999999998765544443 35789999997 77899999999999999876665
Q ss_pred HHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHH
Q psy664 199 QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 278 (379)
.+.. .-+.+...|++.++.+|+.|.-++++++..+ .+.-.|.+..+...+.+++.++...|=..+.-+.
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 5443 3456888899999999999999999998422 3334688999999999999988887764444444
Q ss_pred HH
Q psy664 279 KL 280 (379)
Q Consensus 279 ~~ 280 (379)
..
T Consensus 1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred hc
Confidence 33
No 198
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.74 E-value=0.61 Score=38.77 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=75.4
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHH-HhcCCChHHHHHHHhcCcHHHHHHhhcC---------CChHHHHHHHHHHHHhh
Q psy664 82 ALACLSRLLFHADPDVLADACWAIS-YLSDGPNEKIQAVIDAGVCRRLVELLMH---------DQHKVVSAALRAVGNIV 151 (379)
Q Consensus 82 ~l~~L~~lL~~~d~~v~~~a~~aL~-~l~~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~i~~~al~~L~nl~ 151 (379)
-...+++.+.+..... ..+..|. .|-..+..+.+.+++.|++..|+.+|.. .+......+++|+..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4445666665544321 2222222 3334555788899999999999998863 35578889999999998
Q ss_pred cCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 152 TGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
.........+-..+++..|...|.+++..++..|+.+|+-+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 655445555556799999999999999999999999998876
No 199
>KOG2137|consensus
Probab=95.70 E-value=0.19 Score=49.32 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=98.0
Q ss_pred CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh-hcCCChHHHHHHHHHHHHhhc
Q psy664 74 PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVEL-LMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 74 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~i~~~al~~L~nl~~ 152 (379)
+...+...++|.|..-+++.+..++..++..+...++--+ -..++.-++|++.++ +.+.+..++..++-|++-++.
T Consensus 382 ~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q 458 (700)
T KOG2137|consen 382 PPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ 458 (700)
T ss_pred ChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence 4445667899999999999999999999999988775433 224555678888887 556788999999999998883
Q ss_pred CCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCc
Q psy664 153 GDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAE 220 (379)
Q Consensus 153 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~ 220 (379)
.- +...-...+..+.+-.+..++.+......+..++....... +.++.+.++|.++-+...+.
T Consensus 459 ~l----D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 RL----DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HH----HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 21 11111123444555556677888888888888865533332 45666788999888877654
No 200
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.63 E-value=1.8 Score=39.79 Aligned_cols=163 Identities=14% Similarity=0.163 Sum_probs=114.4
Q ss_pred HHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc-CCchhhHHHhhc-C-cHHHHHHhhcCCC-------------hh
Q psy664 117 QAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT-GDDQQTQVILNC-S-ALMCLLHLIQSPK-------------ES 180 (379)
Q Consensus 117 ~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~-------------~~ 180 (379)
+.+++.. ++.+.+.|......+..++++.|..++. ........+... + -.+.+.+++.... +.
T Consensus 51 ~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s 129 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS 129 (330)
T ss_pred HHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence 3344443 7888888999999999999999999998 554555555543 2 2445666663221 28
Q ss_pred hHHHHHHHHHH-hhcCChHHHHHHH-hcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC---HHHHHHHHHcCChHHH
Q psy664 181 IRKEACWAVSN-ITAGNRQQIQAVI-DANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT---PDQIRYLIQQGCIEPF 255 (379)
Q Consensus 181 v~~~a~~~l~n-l~~~~~~~~~~~~-~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~l~~~~~i~~L 255 (379)
+|...+..+-. +..+++.....++ +.+++..+.+-|...++++....+.++..-+.... ......+.....+..|
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l 209 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQL 209 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHH
Confidence 88887766555 4456666666655 45788889999989889999999999985332221 3333455666788899
Q ss_pred HHhhccCCH----HHHHHHHHHHHHHHHH
Q psy664 256 CELLTLLDA----KIIQVALNGLENILKL 280 (379)
Q Consensus 256 ~~lL~~~d~----~v~~~al~~L~~l~~~ 280 (379)
..+....++ .+...+-..|..++..
T Consensus 210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 210 ASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 998888777 7888888888887754
No 201
>KOG2025|consensus
Probab=95.62 E-value=1.7 Score=42.95 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=75.2
Q ss_pred CChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 40 NILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 40 g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
|.+..+++-. +.+..++-.++.+|..+.... ...+..+..++...+..-+.+..+.|+.+|..+|+++-.++.+.
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 3444555555 778888889999999888744 45666677788888888888889999999999999998443211
Q ss_pred HHhcCcHHHHHHhhcC-CChHHHHHHHHHHH
Q psy664 119 VIDAGVCRRLVELLMH-DQHKVVSAALRAVG 148 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~ 148 (379)
+..+...+..+++. +++++++.|+..+.
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 12345666667665 68899998776655
No 202
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.15 Score=48.70 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=102.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHH--HhcCCChHHHHHHHhcCcHHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q psy664 85 CLSRLLFHADPDVLADACWAIS--YLSDGPNEKIQAVIDAGVCRRLVEL-LMHDQHKVVSAALRAVGNIVTGDDQQTQVI 161 (379)
Q Consensus 85 ~L~~lL~~~d~~v~~~a~~aL~--~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~i~~~al~~L~nl~~~~~~~~~~~ 161 (379)
.+.+++.+.|+-++.....+++ +...++ .|++..+++. +.+.+++++++|+-+||-++..+
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D------- 583 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD------- 583 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecC-------
Confidence 3445556666666666555443 222221 3567778887 67789999999999999988654
Q ss_pred hhcCcHHHHHHhhc-CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 162 LNCSALMCLLHLIQ-SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 162 ~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
...++..+++|. +.+..||.-.+.+++-.|++...+. .+..|-.++.+...-||+.|+.+++-++..+++
T Consensus 584 --~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 584 --RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred --cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 345666777774 4569999999999999888665432 234455667778888999999999998877766
Q ss_pred HHHHHHHHcCChHHHHHhhccC
Q psy664 241 DQIRYLIQQGCIEPFCELLTLL 262 (379)
Q Consensus 241 ~~~~~l~~~~~i~~L~~lL~~~ 262 (379)
+..... .++.+.+..++.++
T Consensus 655 ~Lnp~v--~~I~k~f~~vI~~K 674 (926)
T COG5116 655 ELNPNV--KRIIKKFNRVIVDK 674 (926)
T ss_pred ccChhH--HHHHHHHHHHHhhh
Confidence 543332 24455666665543
No 203
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.55 E-value=0.34 Score=42.24 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHH-hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHh
Q psy664 180 SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ-KAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCEL 258 (379)
Q Consensus 180 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~l 258 (379)
.....|+.+|.-++--.+.....+-.+..+..+++++. ...+.++..++.++..++ ..++...+.+-+.+++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iL-ld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCIL-LDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHH-HcChHHHHHHHHhCCHHHHHHH
Confidence 34556777887777777777888888899999999994 457899999999999988 6777888888899999999999
Q ss_pred hccC--CHHHHHHHHHHHHHHHH
Q psy664 259 LTLL--DAKIIQVALNGLENILK 279 (379)
Q Consensus 259 L~~~--d~~v~~~al~~L~~l~~ 279 (379)
++.. +.+++..++..|.-.+.
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 9874 56888888887765554
No 204
>KOG1078|consensus
Probab=95.53 E-value=0.68 Score=46.06 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=52.0
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
..+.+-.++++..+.+...|.+++.++......... ..+..|..++.+++..+|-.|.++|..++...|
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 456666777888888999999999887754332221 267778888899999999999999999876444
No 205
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.53 E-value=0.16 Score=49.15 Aligned_cols=125 Identities=9% Similarity=0.101 Sum_probs=81.2
Q ss_pred CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHH
Q psy664 93 ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLH 172 (379)
Q Consensus 93 ~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~ 172 (379)
.+.....-|...+..-..+-++..+ .++..++.+.++.+..|+..|++.|-.+|.++++.... +.++|.+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHH
Confidence 4677777777777766555444333 46788999999999999999999999999987766654 4678999
Q ss_pred hhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHH---hCcHHHHHHHHHHHHHHh
Q psy664 173 LIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ---KAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 173 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~---~~~~~v~~~a~~~l~nl~ 235 (379)
+|...++.-...+-++|..+...++. +.+..++..+. .++..+|..++..|+.-+
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 99998887777777888777655443 33444444444 567778888877775433
No 206
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.47 E-value=0.6 Score=43.42 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=124.0
Q ss_pred CchhHHHHHhCCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC---C--hHHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA---D--PDVLADA 101 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---d--~~v~~~a 101 (379)
++.+|..+...|..+.+++.+ ..+.....-++-++..+...+..........+.+..+.+++..+ + .+....-
T Consensus 52 ~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~ 131 (361)
T PF07814_consen 52 DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSR 131 (361)
T ss_pred CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhh
Confidence 899999999999999999999 33333444444444444444434444444566677777777711 1 1111000
Q ss_pred HHHHHHhcCCChHHHHHHHhcCcHHHHHHhh---c------CCChHHHHHHHHHHHHhhc--------------CCchhh
Q psy664 102 CWAISYLSDGPNEKIQAVIDAGVCRRLVELL---M------HDQHKVVSAALRAVGNIVT--------------GDDQQT 158 (379)
Q Consensus 102 ~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL---~------~~~~~i~~~al~~L~nl~~--------------~~~~~~ 158 (379)
...+... .+ ..+..+...+ . +....-+..|+.++-.++. ..+..+
T Consensus 132 ~~~lsk~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fk 199 (361)
T PF07814_consen 132 KKNLSKV-------QQ-----KSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFK 199 (361)
T ss_pred hhhhhHH-------HH-----HHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccch
Confidence 1111111 11 1112122222 1 2233445666666666631 112334
Q ss_pred HHHhhcCcHHHHHHhhcC----C------------ChhhHHHHHHHHHHhhcCChHHHHHHHhc--CchHHHH-HHHHh-
Q psy664 159 QVILNCSALMCLLHLIQS----P------------KESIRKEACWAVSNITAGNRQQIQAVIDA--NIFPSLI-EILQK- 218 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~----~------------~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~i~~Li-~ll~~- 218 (379)
+.+.+.|++..++.++.. . +......+.+++-|.+..+.+....+... +.++.+. .++..
T Consensus 200 eelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~ 279 (361)
T PF07814_consen 200 EELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQC 279 (361)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHH
Confidence 556667889998888751 1 12244567777888766555444444333 3333332 22222
Q ss_pred --CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHh-------hc-------cCCHHHHHHHHHHHHHHHHHc
Q psy664 219 --AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCEL-------LT-------LLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 219 --~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~l-------L~-------~~d~~v~~~al~~L~~l~~~~ 281 (379)
.-.+....++..+.|++ ..++.....+...++...+..+ +. ....++.--++.++.|+++..
T Consensus 280 ~~~~~~~l~~~lrlllNlT-n~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 280 DDQVIQLLLLALRLLLNLT-NNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred HHHHHHHHHHHHHHeeeCC-CCCccchHhhhhhHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeC
Confidence 23444677899999987 6665555555443332222111 11 011256666777777777654
No 207
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.45 E-value=0.12 Score=50.49 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc-CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHH
Q psy664 135 DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ-SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLI 213 (379)
Q Consensus 135 ~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li 213 (379)
+++.++..|--+|..+..-+.++.. .-+|.++..|. +++|.+|..|.-.++.++.+....++.. -..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence 6889999998888876543333332 35899999997 7889999999999999876544434322 34566
Q ss_pred HHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHH
Q psy664 214 EILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 214 ~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 283 (379)
+-|.+.+..|++.+..++.+++.+|.- .-.|-+..+..+|+++|.++...|-..+..++.....
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq~------KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQL------KVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHccce------eeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 777788999999999999999865532 2246678888889999988887777777766665443
No 208
>KOG1820|consensus
Probab=95.34 E-value=0.49 Score=48.29 Aligned_cols=195 Identities=12% Similarity=0.085 Sum_probs=128.5
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchh
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL-MHDQHKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~i~~~al~~L~nl~~~~~~~ 157 (379)
...+-+.+-.-+.+.+..-+..++..+..+..... .....-..|.+-.++... .+.+..+...|+.+|.-|+......
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 34445555556668888999999988887775543 111111124455555553 3457888888999999998765433
Q ss_pred hHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Q psy664 158 TQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG 237 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~ 237 (379)
... ...+..|.+..-+......++..+..++-.++...+ .....+.++..+.+..+.++.++...+...+..
T Consensus 330 ~~~-~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 330 FRK-YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred hHH-HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 222 223667888888877777777777666666544222 124677888899999999999977777776643
Q ss_pred CCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 238 GTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 238 ~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
.++.....-.-.++++.++....+.+.+|+..++.++.-+.....
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 332111111123567788888888899999999999988877544
No 209
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.33 E-value=0.29 Score=49.18 Aligned_cols=203 Identities=15% Similarity=0.100 Sum_probs=109.7
Q ss_pred HHHHHhCCChH---HHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC----CChHHHHHHHHH
Q psy664 33 ETMSLDNNILY---PLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH----ADPDVLADACWA 104 (379)
Q Consensus 33 r~~i~~~g~i~---~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~d~~v~~~a~~a 104 (379)
.|.+...|--+ .+.+++ +....-. .+.+.|..+.... ..+. ...+..+..++++ .++.+...|+.+
T Consensus 385 lDal~~aGT~~av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~-~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~ 458 (618)
T PF01347_consen 385 LDALPQAGTNPAVKFIKDLIKSKKLTDD-EAAQLLASLPFHV-RRPT----EELLKELFELAKSPKVKNSPYLRETALLS 458 (618)
T ss_dssp HHHHHHH-SHHHHHHHHHHHHTT-S-HH-HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhhc-CCCC----HHHHHHHHHHHhCccccCChhHHHHHHHH
Confidence 45555555433 444444 4332222 3445555555443 1122 3455556566553 356788888888
Q ss_pred HHHhcCCChH---------HHHHHHhcCcHHHHHHhhc----CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHH
Q psy664 105 ISYLSDGPNE---------KIQAVIDAGVCRRLVELLM----HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLL 171 (379)
Q Consensus 105 L~~l~~~~~~---------~~~~~~~~g~i~~L~~lL~----~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 171 (379)
++.+....-. .....+...+++.+...+. ..+..-+..++++|||+-. ...++.+.
T Consensus 459 ~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~ 527 (618)
T PF01347_consen 459 LGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLL 527 (618)
T ss_dssp HHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHH
T ss_pred HHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHH
Confidence 8877632100 0111222345666666655 4566788899999999863 13567777
Q ss_pred HhhcCC---ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh--CcHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy664 172 HLIQSP---KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK--AEFKTRKEAAWAITNATSGGTPDQIRYL 246 (379)
Q Consensus 172 ~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~l 246 (379)
.++... +..+|..|+|++..++...++.+. +.+..++.+ .++++|..|+.+|... .-+...
T Consensus 528 ~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~~~~---- 593 (618)
T PF01347_consen 528 PYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMRC--NPSPSV---- 593 (618)
T ss_dssp TTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHHT-----HHH----
T ss_pred hHhhhccccchHHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHhc--CCCHHH----
Confidence 777655 588999999999999777665444 445566654 3688999988887773 223332
Q ss_pred HHcCChHHHHHhhcc-CCHHHHHHHH
Q psy664 247 IQQGCIEPFCELLTL-LDAKIIQVAL 271 (379)
Q Consensus 247 ~~~~~i~~L~~lL~~-~d~~v~~~al 271 (379)
+..+...+.. ++..|..-+.
T Consensus 594 -----l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 594 -----LQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp -----HHHHHHHHTT-S-HHHHHHHH
T ss_pred -----HHHHHHHHhhCchHHHHHHHH
Confidence 4455555654 4455554443
No 210
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.13 E-value=2.6 Score=40.81 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh
Q psy664 53 LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL 132 (379)
Q Consensus 53 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL 132 (379)
..+++-....+.+.-.++.++ ...+.+.+..+++.+.++|..++..+|..|+.++..-. .++..+-.|.+..|.+-+
T Consensus 65 dRil~fl~~f~~Y~~~~dpeg--~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~ 141 (885)
T COG5218 65 DRILSFLKRFFEYDMPDDPEG--EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERL 141 (885)
T ss_pred HHHHHHHHHHHHhcCCCChhh--hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHH
Confidence 344444444444444333222 45678899999999999999999999999999986653 445566678888888888
Q ss_pred cCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC-CChhhHHHHHHHHH
Q psy664 133 MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS-PKESIRKEACWAVS 190 (379)
Q Consensus 133 ~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~l~ 190 (379)
-+.++.++..|+.+|+.+-........ .....+..++++ ++.+||..|..-|.
T Consensus 142 ~DRE~~VR~eAv~~L~~~Qe~~~neen-----~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 142 FDREKAVRREAVKVLCYYQEMELNEEN-----RIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred hcchHHHHHHHHHHHHHHHhccCChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 888899999999999987632221111 223455666654 55888888775443
No 211
>KOG2933|consensus
Probab=95.09 E-value=0.42 Score=42.34 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=104.3
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
.-.+...+..|.++|.+...+.+..+..|+...++.....+. .++..+++-+++....+-+.|+.+++.|++.-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778889999999999999999999765554444443 3677777778888899999999999999865333332
Q ss_pred HHhhcCcHHHHHH-hhcCC---ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 160 VILNCSALMCLLH-LIQSP---KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 160 ~~~~~~~l~~L~~-lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
. .++.++. |+... +.=|++.|-.+|.-+..+...+ .+++.|+..+++..+.++..++.++.+..
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 3344444 33332 3568899999998887543322 45677888888989999999988888765
Q ss_pred cC
Q psy664 236 SG 237 (379)
Q Consensus 236 ~~ 237 (379)
..
T Consensus 234 ~r 235 (334)
T KOG2933|consen 234 IR 235 (334)
T ss_pred ee
Confidence 43
No 212
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.06 E-value=0.38 Score=40.17 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=79.3
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHh---------------hcCcHHHHHHhhcC------CChhhHHHHHHHHHHh
Q psy664 134 HDQHKVVSAALRAVGNIVTGDDQQTQVIL---------------NCSALMCLLHLIQS------PKESIRKEACWAVSNI 192 (379)
Q Consensus 134 ~~~~~i~~~al~~L~nl~~~~~~~~~~~~---------------~~~~l~~L~~lL~~------~~~~v~~~a~~~l~nl 192 (379)
.++......++..|+|++..+......+. +...+..|+..+.. ....-....+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 44555677788889998875443332111 12356666766654 2355667888999999
Q ss_pred hcCChHHHHHHHhc--Cc--hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHH---cCChHHHHHhh
Q psy664 193 TAGNRQQIQAVIDA--NI--FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ---QGCIEPFCELL 259 (379)
Q Consensus 193 ~~~~~~~~~~~~~~--~~--i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~---~~~i~~L~~lL 259 (379)
+ ..++.++.+++. +. +..|+..+.+.+..-|+-++.+|.|+| .....+ .++.. .++++.|+--|
T Consensus 86 S-~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc-Fd~~~H-~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 86 S-QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC-FDTDSH-EWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred c-CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh-ccHhHH-HHhcCchhhhhHHHHHhhc
Confidence 5 556777777765 34 778888888887777888999999988 444444 34432 24444444433
No 213
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.38 Score=46.09 Aligned_cols=91 Identities=21% Similarity=0.310 Sum_probs=65.1
Q ss_pred cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH
Q psy664 175 QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIE 253 (379)
Q Consensus 175 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~ 253 (379)
.+.+.+||+.|..+++-+|..++ +.++..+++|..+ ++.||...+.+|+-.|+ ++-.+. .+.
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiaca-g~G~~~-------a~d 624 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACA-GTGDKV-------ATD 624 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhc-CCccHH-------HHH
Confidence 45678999999999998876544 4566667776654 78899999999998874 332221 144
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 254 PFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 254 ~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
.|-.++.+...-++..|+-++..|+....
T Consensus 625 iL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 625 ILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 55556666777889999999988876543
No 214
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.95 E-value=1.4 Score=41.80 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhCCCCCC-CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC
Q psy664 56 VRNSVWVLSNLCRGKTPP-PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH 134 (379)
Q Consensus 56 ~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~ 134 (379)
...+-..|..+....... .+.......+..|+.++.++|+.-|......|.++-..-...+..+. ..+...+.+.+..
T Consensus 107 L~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e 185 (409)
T PF01603_consen 107 LQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYE 185 (409)
T ss_dssp HHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcC
Confidence 334445555554443111 23345678899999999999999999999999887755444555443 3456666777664
Q ss_pred -CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHH
Q psy664 135 -DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSL 212 (379)
Q Consensus 135 -~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 212 (379)
....-..+.+.+++.+..|-..-.+.....=+...++.|...+. ......-..++..++..++.....++ ..+
T Consensus 186 ~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~l 260 (409)
T PF01603_consen 186 TERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGL 260 (409)
T ss_dssp TS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHH
T ss_pred cccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHH
Confidence 45566889999999999873311111111112234555555554 45566666666666655554433222 122
Q ss_pred HHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH--cHHhhhhcCC
Q psy664 213 IEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL--GEEEAKQTGS 290 (379)
Q Consensus 213 i~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~--~~~~~~~~~~ 290 (379)
++.=-..++.-..--+.-+..++....++....+.. -+...+...+.+....|.+.|+..+.|=-.. ....
T Consensus 261 lk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~-~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~------ 333 (409)
T PF01603_consen 261 LKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMV-PLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQN------ 333 (409)
T ss_dssp HHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHH-HHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCT------
T ss_pred HHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhC------
Confidence 211112233333334555666665555555544332 3466777778888889988888765543211 1000
Q ss_pred cchHHHHHHHhccHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 291 VNPYVVLIEECYGLDKIEF-LQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 291 ~~~~~~~i~~~g~l~~l~~-l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
...+...+ ...|.+ ..+|=+..|+..|..++..+.+-+
T Consensus 334 ~~~i~p~i-----~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 334 SRVILPII-----FPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHH-----HHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 00111122 344443 335667889999999998887654
No 215
>KOG1949|consensus
Probab=94.89 E-value=4.4 Score=40.20 Aligned_cols=235 Identities=14% Similarity=0.067 Sum_probs=136.0
Q ss_pred HhCCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCC--CCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc--C
Q psy664 37 LDNNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKT--PPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLS--D 110 (379)
Q Consensus 37 ~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~--~ 110 (379)
++.|.++.++.-- -+...+....=.+|+.+...+. .........=.=|.+.+-|+-.|..|+..|+..+.+.- .
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 4566666665443 1122222223334444443321 22223333344566777788899999999999998776 2
Q ss_pred CCh---HHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc-CCChhhHHHHH
Q psy664 111 GPN---EKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ-SPKESIRKEAC 186 (379)
Q Consensus 111 ~~~---~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~ 186 (379)
+++ +..+.+++. -...+..+|+++-+.++..|..-+..+.+.-=+....-+-..++.++..-+. ....+||....
T Consensus 206 dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf 284 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVF 284 (1005)
T ss_pred CCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHh
Confidence 332 233444443 3577889999999999999888777766421111111111123333333333 33478888888
Q ss_pred HHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHH
Q psy664 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266 (379)
Q Consensus 187 ~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 266 (379)
..|..+...... ..+++ -++|.+-..|+++..+||-.++..|..+= ... ...+.+---.+.++.-|..++..+
T Consensus 285 ~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik-~vr---a~~f~~I~~~d~~l~~L~~d~~~v 357 (1005)
T KOG1949|consen 285 KGLPMILDNPLS--HPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIK-AVR---AAKFWKICPMDHILVRLETDSRPV 357 (1005)
T ss_pred cCcHHHHcCccc--hhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHH-hhh---hhhhhccccHHHHHHHHhccccHH
Confidence 888887643322 12222 24567777888888999999998888763 111 112223233556666677777777
Q ss_pred HHHHHHHHHHHHH
Q psy664 267 IQVALNGLENILK 279 (379)
Q Consensus 267 ~~~al~~L~~l~~ 279 (379)
.+..+..|.+.+-
T Consensus 358 ~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 358 SRRLVSLIFNSFL 370 (1005)
T ss_pred HHHHHHHHHHhhc
Confidence 7766666666654
No 216
>KOG2999|consensus
Probab=94.55 E-value=3.3 Score=39.81 Aligned_cols=159 Identities=15% Similarity=0.230 Sum_probs=113.4
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK----ESIRKEACWAVSNITAGNRQQ 199 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~ 199 (379)
....+++.+.+++..-+..++..+..++. +......++....+..|.+++.+.+ ..+....+.+++.+..+.--
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv- 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV- 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee-
Confidence 35677888888888778779999999886 4567788899999999999998765 45666666666665432210
Q ss_pred HHHHHhcCchHHHHHHHH--hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 200 IQAVIDANIFPSLIEILQ--KAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 200 ~~~~~~~~~i~~Li~ll~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
--......++.....+.. .-+..+-..|+..+-+++ -++....+.+.+.--+..|+..++..+..++..++..+..+
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~v-l~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLV-LGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 001111233344444432 235567788888888887 56666667788888899999999999999999888888888
Q ss_pred HHHcHHhh
Q psy664 278 LKLGEEEA 285 (379)
Q Consensus 278 ~~~~~~~~ 285 (379)
+..+++..
T Consensus 241 ~~~a~~~~ 248 (713)
T KOG2999|consen 241 FRKAPDDK 248 (713)
T ss_pred HhhCChHH
Confidence 88776654
No 217
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.52 E-value=1.4 Score=36.40 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCChHhH-----------hhhH-HHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhc
Q psy664 55 MVRNSVWVLSNLCRGKTPPPDFAKV-----------APAL-ACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDA 122 (379)
Q Consensus 55 ~~~~a~~~L~~l~~~~~~~~~~~~~-----------~~~l-~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 122 (379)
++..|..+|..+++..++..-+-.- .+.- +.+.-++.++++.+|..|+.++..|-++........-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 4567777777777763222111111 1122 233445667889999999999999988764333322211
Q ss_pred C-------------------cHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHH----HHHhhcCCC
Q psy664 123 G-------------------VCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMC----LLHLIQSPK 178 (379)
Q Consensus 123 g-------------------~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~----L~~lL~~~~ 178 (379)
+ .-..|+..|++ .+..+....+++++.++...+..+- +.|+++. +..++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 1 22344455555 4778889999999999987765542 3455544 555677889
Q ss_pred hhhHHHHHHHHHHhhcC
Q psy664 179 ESIRKEACWAVSNITAG 195 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~ 195 (379)
.+++..+..+++-+.+.
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999887653
No 218
>KOG2137|consensus
Probab=94.48 E-value=1.3 Score=43.88 Aligned_cols=209 Identities=13% Similarity=0.102 Sum_probs=124.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVEL 131 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l 131 (379)
+..-.......|..+--+ .+..+....++|.|+..+. +....-..+-.+..|+...+ +..+....++.|...
T Consensus 286 dn~qKs~Flk~Ls~~ip~---fp~rv~~~kiLP~L~~el~--n~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi 357 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPT---FPARVLFQKILPTLVAELV--NTKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPI 357 (700)
T ss_pred CcHHHHHHHHHHHHhhcc---CCHHHHHHhhhhHHHHHhc--cccccccccchhhhhhhccc---hhhhhhhhhHHHHHH
Confidence 444444555556665543 3455566788888888774 33333333344445554432 223444567778877
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHH
Q psy664 132 LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPS 211 (379)
Q Consensus 132 L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~ 211 (379)
++..++ ....+.++-|+-.-.......-+...++|.|..-++..+..++..++..+..++..-+ ..++..-++|.
T Consensus 358 ~~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~ 432 (700)
T KOG2137|consen 358 YSASDP--KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPR 432 (700)
T ss_pred hccCCc--ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHH
Confidence 774322 1223333333311001111223445678889999999999999999999998864322 24556678888
Q ss_pred HHHH-HHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH---HHHHhhccCCHHHHHHHHHHHHHHHHHc
Q psy664 212 LIEI-LQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIE---PFCELLTLLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 212 Li~l-l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~---~L~~lL~~~d~~v~~~al~~L~~l~~~~ 281 (379)
+..+ +++....++.+++-|+..++. .+-...+++ ++..-....|+.++...+.+..++.-..
T Consensus 433 l~~l~~~tt~~~vkvn~L~c~~~l~q--------~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 433 LKNLAFKTTNLYVKVNVLPCLAGLIQ--------RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred hhcchhcccchHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 8876 345578899999999998862 111122333 4444445678888888887777766543
No 219
>KOG3665|consensus
Probab=94.44 E-value=1.7 Score=44.15 Aligned_cols=196 Identities=18% Similarity=0.209 Sum_probs=120.2
Q ss_pred HHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcH--HHHHHhhcCCCh-
Q psy664 104 AISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL--MCLLHLIQSPKE- 179 (379)
Q Consensus 104 aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~- 179 (379)
++++++...++..+.+++.|++..+..+++. .+..++..+++.++|++...+........ ..+ ..+..++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~-~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIF-EFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHhhcchh
Confidence 7889999988999999999999999999986 67789999999999999654322221111 111 234444544443
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-HHHh
Q psy664 180 SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEP-FCEL 258 (379)
Q Consensus 180 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~-L~~l 258 (379)
+.-..|+.++..+...+++... .+.-+. +...-..++.+.. ...+.... ...+.+ +..+
T Consensus 573 ersY~~~siLa~ll~~~~~~~~----~~~r~~-----------~~~~l~e~i~~~~----~~~~~~~~-~~~f~~~~~~i 632 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTE----CVFRNS-----------VNELLVEAISRWL----TSEIRVIN-DRSFFPRILRI 632 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCcc----ccchHH-----------HHHHHHHHhhccC----ccceeehh-hhhcchhHHHH
Confidence 6677777777777654433111 111111 1111111222221 11111111 122333 4445
Q ss_pred hcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q psy664 259 LTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE-NIEIYQKAFDIIEHYF 330 (379)
Q Consensus 259 L~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~-~~~v~~~a~~il~~~~ 330 (379)
+.. ..+..+.+|+|++.+++...++ ++..+.+.|++..+.++-.+. ..++...+..++.+..
T Consensus 633 l~~s~~~g~~lWal~ti~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 633 LRLSKSDGSQLWALWTIKNVLEQNKE----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred hcccCCCchHHHHHHHHHHHHHcChh----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 543 5678899999999999986543 578899999999998766433 4566777777776543
No 220
>KOG1820|consensus
Probab=94.43 E-value=1.5 Score=44.83 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=123.6
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLL-FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRL 128 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 128 (379)
+.+..-+..++.-+.-.+.... ........+.+-.+.+.. .+.+..+...++.+|.-|+........ -+..++.+.+
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~-~~~~~v~p~l 341 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR-KYAKNVFPSL 341 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH-HHHHhhcchH
Confidence 6677777788888877777653 112222234555555543 355788888999999888865443322 2234678999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhcC
Q psy664 129 VELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR-QQIQAVIDAN 207 (379)
Q Consensus 129 ~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~ 207 (379)
+..+......++..++.++-.++.... -....+.+...+.+.++.++.++...+........ .....-.-.+
T Consensus 342 ld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~ 414 (815)
T KOG1820|consen 342 LDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKT 414 (815)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHH
Confidence 999999888888888777776664211 12456788899999999999997776666544322 2222222337
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHH
Q psy664 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPD 241 (379)
Q Consensus 208 ~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~ 241 (379)
++|.++....+.+.+||..|..+++-+......+
T Consensus 415 l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 415 LVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 8888888888889999999999988876444433
No 221
>KOG1566|consensus
Probab=94.41 E-value=3.5 Score=36.79 Aligned_cols=207 Identities=16% Similarity=0.150 Sum_probs=141.1
Q ss_pred HHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch---hhHHHh--hcCcHHHHHHhhcCCChhhHHHHHHHHH
Q psy664 116 IQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ---QTQVIL--NCSALMCLLHLIQSPKESIRKEACWAVS 190 (379)
Q Consensus 116 ~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~---~~~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 190 (379)
.+.+.+.|.+..++..+..-+-+-+..++.+..|+-...-. .+...+ ....++.+++- ... ..+.+...+
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~--~~~iaL~cg 146 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YEN--TPEIALTCG 146 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hcc--chHHHHHHH
Confidence 35677889999999999888888888888888888643221 111111 11233333333 111 122233334
Q ss_pred Hh---hcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--CC-hHHHHHhhccCCH
Q psy664 191 NI---TAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQ--GC-IEPFCELLTLLDA 264 (379)
Q Consensus 191 nl---~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~--~~-i~~L~~lL~~~d~ 264 (379)
++ |...+.....++.+.-+......++.+..++...|..++..++..+......++..+ .. .+..-.++.+++.
T Consensus 147 ~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Ny 226 (342)
T KOG1566|consen 147 NMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENY 226 (342)
T ss_pred HHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccce
Confidence 43 334555566777888888888899999999999999999999866644444444432 22 3346668888999
Q ss_pred HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 265 KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 265 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
-++..++..++.++....+... -...+.+...+..+..|+..+...++-.|..+...|-....
T Consensus 227 vtkrqs~kllg~llldr~N~~~-------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 227 VTKRQSLKLLGELLLDRSNSAV-------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred ehHHHHHHhHHHHHhCCCcHHH-------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 9999999999999876655433 23456555667888999999999999999999887766543
No 222
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.33 E-value=0.25 Score=39.21 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=63.3
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH-ENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~-~~~~v~~~a~~il~~~~ 330 (379)
+..|..-|.+.++.++..++..|..++..++.. |...+.+..+++.|..+... .+..|++++..+|..+.
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~---------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKR---------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH---------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 556666678889999999999999999988654 55677788889999998877 78999999999999997
Q ss_pred CCCcccc
Q psy664 331 GSEEEDT 337 (379)
Q Consensus 331 ~~~~~~~ 337 (379)
.....++
T Consensus 110 ~~f~~~~ 116 (144)
T cd03568 110 DEFKNDP 116 (144)
T ss_pred HHhCCCc
Confidence 6655443
No 223
>KOG2956|consensus
Probab=94.31 E-value=4.8 Score=37.96 Aligned_cols=176 Identities=11% Similarity=0.092 Sum_probs=108.9
Q ss_pred ChHHHHHHHHHHHH-hcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcC--cHHH
Q psy664 94 DPDVLADACWAISY-LSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCS--ALMC 169 (379)
Q Consensus 94 d~~v~~~a~~aL~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~--~l~~ 169 (379)
..+-+..|+.-|.. ++.+. ...-.-.-..++..+++.|.. .++.++..|++.|+.+++..+ ..+.+.- ++..
T Consensus 300 ~a~~~k~alsel~~m~~e~s-fsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~---~~l~DstE~ai~K 375 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGS-FSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP---ARLFDSTEIAICK 375 (516)
T ss_pred chhHHHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch---HhhhchHHHHHHH
Confidence 34556666664444 44332 211111112467778888888 678889999999999997543 3333321 2223
Q ss_pred HHHhhcCCChhhHHHHHHHHHH-hhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy664 170 LLHLIQSPKESIRKEACWAVSN-ITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ 248 (379)
Q Consensus 170 L~~lL~~~~~~v~~~a~~~l~n-l~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~ 248 (379)
++..-.+..+.+...|...... ++.+.|.+.- ..+..++.+.|.+.-..++.++..++..-+.+...-++
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I--------~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll- 446 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI--------VNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL- 446 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH--------HHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-
Confidence 3333345556666555555444 5555554332 23344445577777777777888888666666554444
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 249 QGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 249 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
..+.|.++.-.++....+|+.+..+|..+.....
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 3578888888899999999999998888776543
No 224
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.26 E-value=0.23 Score=36.03 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=58.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChH
Q psy664 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 198 (379)
....+..+.++.+.++..++..|+.+..... ....-..+++..+...++++++-|-..|..++..++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4566777889999999999999999997665 22222346788889999999999999999999999876654
No 225
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.24 E-value=0.81 Score=45.02 Aligned_cols=141 Identities=9% Similarity=0.068 Sum_probs=103.8
Q ss_pred hhHHHHHHhhcC----CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCc
Q psy664 81 PALACLSRLLFH----ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVTGDD 155 (379)
Q Consensus 81 ~~l~~L~~lL~~----~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~~~~ 155 (379)
..-|.+.....+ .|++++..|..+|..+..-+.+.. ...+|.++..+. +++|.++.+|+-.+|.+...-.
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555555544 689999999999987764433322 235788998887 7999999999999998875443
Q ss_pred hhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 156 QQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 156 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
...+ ..-.+|.+-|.+.+..||+.+..++.++.-... +--.|-++.+..+|.+.|.++..-|-..+..+.
T Consensus 967 ~~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 967 TTAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 3333 234678888999999999999999999753322 223488889999999999999888888888876
Q ss_pred c
Q psy664 236 S 236 (379)
Q Consensus 236 ~ 236 (379)
+
T Consensus 1037 ~ 1037 (1128)
T COG5098 1037 K 1037 (1128)
T ss_pred h
Confidence 3
No 226
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.18 E-value=3.8 Score=40.81 Aligned_cols=134 Identities=20% Similarity=0.207 Sum_probs=83.9
Q ss_pred hhHHHHHHhhcCC----ChHHHHHHHHHHHHhcC----CChHHHHHHHhcCcHHHHHHhhc----CCChHHHHHHHHHHH
Q psy664 81 PALACLSRLLFHA----DPDVLADACWAISYLSD----GPNEKIQAVIDAGVCRRLVELLM----HDQHKVVSAALRAVG 148 (379)
Q Consensus 81 ~~l~~L~~lL~~~----d~~v~~~a~~aL~~l~~----~~~~~~~~~~~~g~i~~L~~lL~----~~~~~i~~~al~~L~ 148 (379)
..+..+..++.++ .+.++..|+.+++.+.. +.+.... .+...+++.+.+.|. ..+..-+..++++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4566677777643 46778888888876663 2211101 112235666665554 345566778999999
Q ss_pred HhhcCCchhhHHHhhcCcHHHHHHhhc-C--CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh--CcHHH
Q psy664 149 NIVTGDDQQTQVILNCSALMCLLHLIQ-S--PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK--AEFKT 223 (379)
Q Consensus 149 nl~~~~~~~~~~~~~~~~l~~L~~lL~-~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~--~~~~v 223 (379)
|+... ..++.+...+. . .+..+|..|+|++.+++...++.++ +.++.+..+ .++++
T Consensus 472 N~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHH
Confidence 98642 22344454554 2 2468999999999999766665444 344555554 37899
Q ss_pred HHHHHHHHHHH
Q psy664 224 RKEAAWAITNA 234 (379)
Q Consensus 224 ~~~a~~~l~nl 234 (379)
|..|+.+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 99998888773
No 227
>KOG1848|consensus
Probab=94.16 E-value=3.1 Score=44.36 Aligned_cols=231 Identities=13% Similarity=0.111 Sum_probs=124.8
Q ss_pred cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc----C---CChHHHHHHHHHHHHhhcCCchhhHHHhh
Q psy664 91 FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM----H---DQHKVVSAALRAVGNIVTGDDQQTQVILN 163 (379)
Q Consensus 91 ~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~---~~~~i~~~al~~L~nl~~~~~~~~~~~~~ 163 (379)
..+..+++...+.++.++...+.+. .+ .| -+.+.+.++ . .+.++.+.+..++.-|+.+.-.-...-.-
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~---ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEH---LL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchh---hc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 3455788888888888887554322 12 12 334444433 2 25566777777777776532111111111
Q ss_pred cCcHHHHHHhhc-CCChhhHHHHHHHHHHhhc---------CChHHHH-------------HHHhcCc----hHHHHHHH
Q psy664 164 CSALMCLLHLIQ-SPKESIRKEACWAVSNITA---------GNRQQIQ-------------AVIDANI----FPSLIEIL 216 (379)
Q Consensus 164 ~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~---------~~~~~~~-------------~~~~~~~----i~~Li~ll 216 (379)
.++++.+...-. ..+-.|--.|...++++.. ++....+ .+.-.++ +..|.++-
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 244555555443 3345666666655555432 1111111 1111122 33334444
Q ss_pred HhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc---------CCHHH-------HHHHHHHHHHHHHH
Q psy664 217 QKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL---------LDAKI-------IQVALNGLENILKL 280 (379)
Q Consensus 217 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~---------~d~~v-------~~~al~~L~~l~~~ 280 (379)
.+..++||..|+.++-.+...+....-....+.-+...++.+|+. +..++ .-..+.++..++..
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 456789999999999998865554444445555566677777761 12233 23344445544432
Q ss_pred cHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 281 GEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
.-+. -...+.+...+++. ++-+..+..+.++++...|...+++..-
T Consensus 1087 ~fk~---llnln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1087 NFKL---LLNLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHH---HHhcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 2111 12255555555554 6677778888999999988888776643
No 228
>KOG2999|consensus
Probab=94.10 E-value=5.9 Score=38.19 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=115.9
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCC----hHHHHHHHHHHHHhhcCCchh
Q psy664 82 ALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQ----HKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 82 ~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~----~~i~~~al~~L~nl~~~~~~~ 157 (379)
-...+...+.+++..-+..+...+..++.+. .....++...++..|..++.+.. ..+...+++++..+....-..
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 3456777788888888888888888888776 57777888999999999998754 355666666666554321100
Q ss_pred hHHHhhcCcHHHHHHhh--cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 158 TQVILNCSALMCLLHLI--QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
-+ .....++-....+. +..+..+-..|+..+-++..+++...+.+.+.--+..|+..++..+..++..|...+..+.
T Consensus 163 W~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 00 11112233333333 2335678889999999998888888888888889999999999999999988887777777
Q ss_pred cCCCHHHHHHHHHc
Q psy664 236 SGGTPDQIRYLIQQ 249 (379)
Q Consensus 236 ~~~~~~~~~~l~~~ 249 (379)
....+...+.+.+.
T Consensus 242 ~~a~~~~R~~~~~~ 255 (713)
T KOG2999|consen 242 RKAPDDKRFEMAKS 255 (713)
T ss_pred hhCChHHHHHHHHH
Confidence 55565555555443
No 229
>KOG3665|consensus
Probab=94.02 E-value=7.9 Score=39.42 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=63.3
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHH
Q psy664 230 AITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIE 308 (379)
Q Consensus 230 ~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~ 308 (379)
++.+.+ ..+++....+.+.+++..+...+.. ....++..++..+.+++...+.... ...++.... ..+.
T Consensus 494 ~l~~~t-~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~--------~~~~~~~~~-~~f~ 563 (699)
T KOG3665|consen 494 ALWNIT-DENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELREL--------LMIFEFIDF-SVFK 563 (699)
T ss_pred HHHhhh-cCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhh--------hhHHHHHHH-HHHH
Confidence 555655 6688889999999999999999985 5568999999999999988765421 111111111 2344
Q ss_pred HhhcCCCH-HHHHHHHHHHHHhcCCC
Q psy664 309 FLQSHENI-EIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 309 ~l~~~~~~-~v~~~a~~il~~~~~~~ 333 (379)
.+...-+. +..-.|..+|..+..+.
T Consensus 564 ~~~~~w~~~ersY~~~siLa~ll~~~ 589 (699)
T KOG3665|consen 564 VLLNKWDSIERSYNAASILALLLSDS 589 (699)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHhCC
Confidence 44444333 66667777777766653
No 230
>KOG1566|consensus
Probab=93.98 E-value=4.3 Score=36.23 Aligned_cols=206 Identities=9% Similarity=0.083 Sum_probs=142.8
Q ss_pred CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCCh--HhH---hhhHHHHHHhhcCCChHHHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDF--AKV---APALACLSRLLFHADPDVLADAC 102 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~---~~~l~~L~~lL~~~d~~v~~~a~ 102 (379)
.......+-+.|.+..++..+ .-+-+-+..++.+..++-+..-..... ... ..++..|++.-.. .+++...+-
T Consensus 68 ~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg 146 (342)
T KOG1566|consen 68 VAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCG 146 (342)
T ss_pred HHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHH
Confidence 344556788999999999998 777788888888888887754322111 111 2455555554111 366666665
Q ss_pred HHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCc----HHHHHHhhcCCC
Q psy664 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSA----LMCLLHLIQSPK 178 (379)
Q Consensus 103 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~----l~~L~~lL~~~~ 178 (379)
..|.....+. ...+.+....-.......++.+.-++...|..+...+.+........++.... ..+--.++.+.+
T Consensus 147 ~mlrEcirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N 225 (342)
T KOG1566|consen 147 NMLRECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN 225 (342)
T ss_pred HHHHHHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc
Confidence 5565555553 35566777777888888888888899999999999888655444444443332 455677889999
Q ss_pred hhhHHHHHHHHHHhhcCCh---HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 179 ESIRKEACWAVSNITAGNR---QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~---~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
.-++..+..+++.+..+.+ ...+.+....-+..++.+|......++-+|..+.--.++
T Consensus 226 yvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 226 YVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVA 286 (342)
T ss_pred eehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhc
Confidence 9999999999999765322 223344444678899999999999999999988877664
No 231
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.84 E-value=0.35 Score=38.29 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=61.5
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS-HENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~-~~~~~v~~~a~~il~~~~ 330 (379)
+..|..-|.++++.++..++..|..++..++.. |...+.+.++++.|..+.. ..++.|++++..+|..+.
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~---------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTH---------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH---------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 556666778889999999999999999986443 5567778888999988886 677899999999999887
Q ss_pred CCCccc
Q psy664 331 GSEEED 336 (379)
Q Consensus 331 ~~~~~~ 336 (379)
.....+
T Consensus 114 ~~f~~~ 119 (142)
T cd03569 114 LAFRNK 119 (142)
T ss_pred HHhCCC
Confidence 655444
No 232
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=93.80 E-value=3.6 Score=35.84 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=73.9
Q ss_pred hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC--hhhHHHHHHHHHHhhcCChH
Q psy664 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK--ESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~ 198 (379)
+..+.+.++++++.++..+ -..+|...+.+-...-..+-.|-++.|.+++.+++ .-+|..|+.++..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcchH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 4467899999998765421 11222222211111111222355677778887775 77899999999999887776
Q ss_pred HHHHHHhcCchHHHHHH-HHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q psy664 199 QIQAVIDANIFPSLIEI-LQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFC 256 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~l-l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~ 256 (379)
....+++ .+..++.. +...+..+...-+..++.+....--..++.+.+.|.++..+
T Consensus 147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 6666653 34444444 43443344444444444443222344556667778776644
No 233
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.62 E-value=4.4 Score=35.13 Aligned_cols=200 Identities=15% Similarity=0.097 Sum_probs=114.0
Q ss_pred hHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHH
Q psy664 42 LYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV 119 (379)
Q Consensus 42 i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~ 119 (379)
++.|+.-+ ..+++.+.....+|..+|..++ ....-++..+..+...+..+...-+...+..+-...+...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 34444434 6688888999999999998862 2334567777777777777776666666666665543222
Q ss_pred HhcCcHHHHHHh--hc--------CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh-cCCChhhHHHHHHH
Q psy664 120 IDAGVCRRLVEL--LM--------HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI-QSPKESIRKEACWA 188 (379)
Q Consensus 120 ~~~g~i~~L~~l--L~--------~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~ 188 (379)
+.+..++.. ++ +...........++..++...++.. ..+++.+..++ ++.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 334434433 11 1233444445567888887666522 24678888889 77778899999999
Q ss_pred HHHhhcCChHHHHHHHhcCchHHHHHHHHh-CcHHHHHHHHHHHHHHhcCCC--HHHHHHHHHcCChHHHHHhhccCCH
Q psy664 189 VSNITAGNRQQIQAVIDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGGT--PDQIRYLIQQGCIEPFCELLTLLDA 264 (379)
Q Consensus 189 l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~~--~~~~~~l~~~~~i~~L~~lL~~~d~ 264 (379)
+..++...--.+. .....+..-+.. ..+.+.+..+..++.+- .+. .++.. -....++..+-++..+.+.
T Consensus 146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~-~~~~~~e~~~-~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVP-QGAVDSEEYE-ELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhc-cccCChhhhh-HHHHHHHHHHHhhcccccc
Confidence 9999832211111 111222222222 24555554444443322 222 22222 2344567777777666554
No 234
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.60 E-value=0.54 Score=39.64 Aligned_cols=136 Identities=17% Similarity=0.224 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCch-hhHHHhhcCcHHHHH
Q psy664 98 LADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-----DQHKVVSAALRAVGNIVTGDDQ-QTQVILNCSALMCLL 171 (379)
Q Consensus 98 ~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~ 171 (379)
...++..|--+++++ +.+..++++.+--.+..+|.. +.+.++..+++.+|.+..+++. ....+....++|.+.
T Consensus 117 vcnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345555566777776 566667777654444444432 3567788999999999976554 445667779999999
Q ss_pred HhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhc--------CchHHH-HHHHHhCcHHHHHHHHHHHHHHh
Q psy664 172 HLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA--------NIFPSL-IEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 172 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--------~~i~~L-i~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
+++..++.--+.-|+.++.-+. +++...+.+.+. .++..+ .++.+.+..++.+.+.++-..++
T Consensus 196 rIme~gSElSktvaifI~qkil-~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKIL-GDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 9999998888888888888874 444444433221 222222 23445567788888888887764
No 235
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.52 E-value=0.84 Score=37.22 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=75.7
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc--CcHHHHHHhhcCCC-hhhHHHHHHHHHHhhc---CC
Q psy664 123 GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC--SALMCLLHLIQSPK-ESIRKEACWAVSNITA---GN 196 (379)
Q Consensus 123 g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~---~~ 196 (379)
..+.++..+|+++++.-+..++..++-++..++. +.+.+. ..+..+.++|+.++ ..+++.++.++..|.. +-
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4677888999999999999999999988865422 223222 35667778887665 7788999999988753 55
Q ss_pred hHHHHHHHhc---CchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 197 RQQIQAVIDA---NIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 197 ~~~~~~~~~~---~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
++..+++... ++++.++.+++. ......++.+|..++.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 5555555433 345555555543 4667778888888774
No 236
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=92.99 E-value=1.6 Score=33.44 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHH-HHhccHHH
Q psy664 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLI-EECYGLDK 306 (379)
Q Consensus 228 ~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i-~~~g~l~~ 306 (379)
+.-|++++ ..+...... +++.|.+=|+.+++.|...+|..|..++..+..... ..+ .....+..
T Consensus 22 ~~Eia~~t-~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~---------~~~~~~~~~Ik~ 86 (122)
T cd03572 22 YEEIAKLT-RKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK---------RELQRNSAQIRE 86 (122)
T ss_pred HHHHHHHH-HcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH---------HHHHHhHHHHHH
Confidence 33455555 334444433 367888888888899999999999999998865432 222 22333444
Q ss_pred HHHhhc--------CCCHHHHHHHHHHHHHhcCCC
Q psy664 307 IEFLQS--------HENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 307 l~~l~~--------~~~~~v~~~a~~il~~~~~~~ 333 (379)
+.+... .++..|+..|..++.-+|+++
T Consensus 87 ~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 87 CANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 444443 235679999999999999864
No 237
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.96 E-value=1.4 Score=42.63 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=72.8
Q ss_pred cCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC-CCHHH
Q psy664 164 CSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG-GTPDQ 242 (379)
Q Consensus 164 ~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~-~~~~~ 242 (379)
.|.+..+++.+.+++..||...+.++..+... -..++..+-++++..|..-+-+.++-||.+|+.+|+.+-.- ++++.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 47788888888999999999999999988543 33466666778888888888888999999999999997521 22222
Q ss_pred HHHHHHcCChHHHHHhhcc-CCHHHHHHHHH
Q psy664 243 IRYLIQQGCIEPFCELLTL-LDAKIIQVALN 272 (379)
Q Consensus 243 ~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~ 272 (379)
.+...|..+++. +..+|+..++.
T Consensus 169 -------~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 -------RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred -------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 224455555554 34477776654
No 238
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.91 E-value=1.6 Score=36.19 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=62.9
Q ss_pred CChHHHHHHHhcCchHHHHHHHHh---------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCChHHHHHhhccCCH
Q psy664 195 GNRQQIQAVIDANIFPSLIEILQK---------AEFKTRKEAAWAITNATSGGTPDQIRYLIQ-QGCIEPFCELLTLLDA 264 (379)
Q Consensus 195 ~~~~~~~~~~~~~~i~~Li~ll~~---------~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~d~ 264 (379)
.+..-++.+++.|.+..|+++|.. .+.....+++.||..++ .+......+++ .+++..++..|.+++.
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~--n~~~G~~~v~~~~~~v~~i~~~L~s~~~ 172 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM--NTKYGLEAVLSHPDSVNLIALSLDSPNI 172 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT--SSHHHHHHHHCSSSHHHHHHHT--TTSH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH--ccHHHHHHHHcCcHHHHHHHHHHCCCCH
Confidence 455678888888988998888864 24578889999999885 35566666664 6899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy664 265 KIIQVALNGLENIL 278 (379)
Q Consensus 265 ~v~~~al~~L~~l~ 278 (379)
.++..++..|..++
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 239
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.77 E-value=7.5 Score=39.11 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=90.2
Q ss_pred cHHHHHHhhcC----CChHHHHHHHHHHHHhhcCCchh---------hHHHhhcCcHHHHHHhhc----CCChhhHHHHH
Q psy664 124 VCRRLVELLMH----DQHKVVSAALRAVGNIVTGDDQQ---------TQVILNCSALMCLLHLIQ----SPKESIRKEAC 186 (379)
Q Consensus 124 ~i~~L~~lL~~----~~~~i~~~al~~L~nl~~~~~~~---------~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~ 186 (379)
.+..+..++.+ +++.+...|+-+++.+....... ........+++.+...+. ..+..-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34555666654 45678888888888876421111 011222345666666554 45667888999
Q ss_pred HHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--
Q psy664 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKA---EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-- 261 (379)
Q Consensus 187 ~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-- 261 (379)
.+|+|+- .+ ..++.+..++... +..+|..|+|++..+. ...++.+ .+.|..++.+
T Consensus 512 kaLgN~g--~~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~-~~~~~~v--------~~~l~~I~~n~~ 571 (618)
T PF01347_consen 512 KALGNLG--HP---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA-KHCPEKV--------REILLPIFMNTT 571 (618)
T ss_dssp HHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG-GT-HHHH--------HHHHHHHHH-TT
T ss_pred HHhhccC--Cc---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHh-hcCcHHH--------HHHHHHHhcCCC
Confidence 9999983 23 2455555555544 6789999999999875 4444433 3455556544
Q ss_pred CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh-cCCCHHHHHHHHHHH
Q psy664 262 LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ-SHENIEIYQKAFDII 326 (379)
Q Consensus 262 ~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~-~~~~~~v~~~a~~il 326 (379)
.+.++|..|... ++...+... . +..|...+ ..++.+|......-|
T Consensus 572 e~~EvRiaA~~~---lm~~~P~~~-----------~------l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 572 EDPEVRIAAYLI---LMRCNPSPS-----------V------LQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp S-HHHHHHHHHH---HHHT---HH-----------H------HHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred CChhHHHHHHHH---HHhcCCCHH-----------H------HHHHHHHHhhCchHHHHHHHHHhc
Confidence 567888877554 444433221 1 34554444 556677777665544
No 240
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.51 E-value=0.45 Score=34.50 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=57.5
Q ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHH
Q psy664 209 FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 209 i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 283 (379)
+...+..+.++.+.+|..++..|.+++..++ ....--.+++..+...|.++|+.|-.+|..+|..++...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4556677788889999999999999997666 11112245678888899999999999999999999987765
No 241
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.45 E-value=2.7 Score=34.00 Aligned_cols=147 Identities=11% Similarity=0.130 Sum_probs=84.8
Q ss_pred HhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh
Q psy664 79 VAPALACLSRLLFHA-DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~-d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~ 157 (379)
....++.|.++|+.+ +..++.+++.+++.|..-++-..+.+.... +.-. -...+.......+...+ .....+++
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~~~-~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPMMG-ISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhhcc-CCCchHHH
Confidence 356788899999865 589999999999999876664444222211 1000 01111112222222111 21122222
Q ss_pred hHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 158 TQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
.. .-++..|++.|++++ ..-...++.++.++.......+...+. .++|.+++.+++.+...++...+-|+.++
T Consensus 83 y~----~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YP----TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22 234667888887766 455556777777765422222222222 58899999999887788887777777765
No 242
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.27 E-value=3.9 Score=33.85 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhhcCCchhh-----HHHh------hc-CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy664 139 VVSAALRAVGNIVTGDDQQT-----QVIL------NC-SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA 206 (379)
Q Consensus 139 i~~~al~~L~nl~~~~~~~~-----~~~~------~~-~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 206 (379)
+|..|+.+|.-++...+... ..++ .. .-.+.+--++.++++++|..|+.++..|..+........-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 56777788877776522110 1111 11 122334455678889999999999999988876655544322
Q ss_pred C-------------------chHHHHHHHHh-CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHH
Q psy664 207 N-------------------IFPSLIEILQK-AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266 (379)
Q Consensus 207 ~-------------------~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 266 (379)
+ +-..|+..++. .+..+..+.+.++..++..-.-+..+.=.-..++..+..++.+.|+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 11223333333 366778888999998885433333221111223555666677899999
Q ss_pred HHHHHHHHHHHHHHc
Q psy664 267 IQVALNGLENILKLG 281 (379)
Q Consensus 267 ~~~al~~L~~l~~~~ 281 (379)
+..++.+++.++...
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998887643
No 243
>KOG2933|consensus
Probab=92.10 E-value=1.1 Score=39.72 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=95.9
Q ss_pred hHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q psy664 42 LYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 42 i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~ 120 (379)
+...+..| +.+.+........+..|+.... ..-......++..+++-+++....|-..||.+++-|...-.+.+....
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555 6677777788888888888763 223334457788888888888899999999999988865444444322
Q ss_pred hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHh
Q psy664 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNI 192 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 192 (379)
+ +.+..|+.--..++.=+++.|-.+|..++..-.. ..+++.|...+++.++.++..++.++.+.
T Consensus 169 d-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 169 D-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred H-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 1 2222222222234566888899999887754322 23577888889999999999998877764
No 244
>PRK14707 hypothetical protein; Provisional
Probab=92.06 E-value=23 Score=40.14 Aligned_cols=231 Identities=17% Similarity=0.130 Sum_probs=129.2
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHH-HHhcCCChHHHHHHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhh
Q psy664 81 PALACLSRLLFHADPDVLADACWAI-SYLSDGPNEKIQAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL-~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
++-..|..+-+.++..+...+..++ ..++.+. ..++. ++...+...++-|. .++..+...|...|+.=...++...
T Consensus 248 ~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~a-l~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~ 325 (2710)
T PRK14707 248 ELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKA-LDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELC 325 (2710)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHh-cCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhh
Confidence 4444444444555654444444444 3555443 33332 23333444444443 3677777776666665444555555
Q ss_pred HHHhhcCcHHHHHHhh-cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Q psy664 159 QVILNCSALMCLLHLI-QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG 237 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~ 237 (379)
+.+ +.-.+...++.| +-++..+-..|+.+|.-=...+++..+.+--.|+-..|-.+-+-++..+...|+..|+.-+ .
T Consensus 326 ~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l-~ 403 (2710)
T PRK14707 326 KAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHV-V 403 (2710)
T ss_pred hcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHh-c
Confidence 433 333333344444 4455555555555555433455555554433343333333334467788888888888766 6
Q ss_pred CCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHH
Q psy664 238 GTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIE 317 (379)
Q Consensus 238 ~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~ 317 (379)
++.+....|--.|+-..|-.+-+.+|..++..+...|.--+....+. +..+.-.++...|..+..=++..
T Consensus 404 ~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l----------~~~~~p~~va~~LnalSKWPd~p 473 (2710)
T PRK14707 404 DDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTEL----------CKALDPINVTQALDALSKWPDTP 473 (2710)
T ss_pred cChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHH----------HhhcChHHHHHHHHHhhcCCCCh
Confidence 77777777766677777777777899999999888887776655443 33444444555666666666655
Q ss_pred HHHHHHHH
Q psy664 318 IYQKAFDI 325 (379)
Q Consensus 318 v~~~a~~i 325 (379)
+...|...
T Consensus 474 ~c~~aa~~ 481 (2710)
T PRK14707 474 ICGQTASA 481 (2710)
T ss_pred hHHHHHHH
Confidence 55444433
No 245
>PRK14707 hypothetical protein; Provisional
Probab=92.05 E-value=26 Score=39.82 Aligned_cols=268 Identities=14% Similarity=0.077 Sum_probs=159.1
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRL 128 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 128 (379)
..+......+..+-..+|..+ .......-+++...|..+-+.++ ++.+..+...-..++.+ +.... -++...+-..
T Consensus 176 ~~~~~c~~aa~~la~~~~~~d-~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~-~~~~q~va~~ 252 (2710)
T PRK14707 176 SDNPDCQAVAPRFAALVASDD-RLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRN-ELKPQELGNA 252 (2710)
T ss_pred CCCchHHHHHHHHHHHhcCCh-hhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHH-hCChHHHHHH
Confidence 334556666666667777766 33333344455555555656555 45554444444456555 33333 3344445555
Q ss_pred HHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcC
Q psy664 129 VELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDAN 207 (379)
Q Consensus 129 ~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~ 207 (379)
++.|.. ++......+...++-=...+....+.+-..++-..|-.+-+-++..+-..|+..+..=...+++..+. ++.-
T Consensus 253 lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~-~~~~ 331 (2710)
T PRK14707 253 LNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKA-LNAR 331 (2710)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhc-cchH
Confidence 555554 66667777776666544344444443333333333334445566777666666666533456665543 3333
Q ss_pred chHHHHHHHHh-CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhh
Q psy664 208 IFPSLIEILQK-AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK 286 (379)
Q Consensus 208 ~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~ 286 (379)
.+..+++-|+. .|..+...|+.+|..-+ ..+++..+.|--.|+-..|-.+-+.+|..++..+...|..=+......
T Consensus 332 ~~~~~LNalsKWpd~~~C~~Aa~~LA~rl-~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l-- 408 (2710)
T PRK14707 332 GLSTALNALSKWPDNPVCAAAVSALAERL-VADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLEL-- 408 (2710)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHh-ccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhh--
Confidence 34444444444 56677777777777665 566777666655565556665667789999988888887666544433
Q ss_pred hcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 287 QTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 287 ~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
...+.-.|.-..|..|..=++..+...+...|......
T Consensus 409 --------~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~ 446 (2710)
T PRK14707 409 --------RKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH 446 (2710)
T ss_pred --------hhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc
Confidence 45677777778888888888888888887777655543
No 246
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.84 E-value=2.8 Score=32.77 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=59.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcC---CCHHHHHHHHHHHHH
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH---ENIEIYQKAFDIIEH 328 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~---~~~~v~~~a~~il~~ 328 (379)
+..|..-|.++++.++..++..|..++..++.. |...+....++..+..+... .++.|++++..++..
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~---------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP---------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILA 109 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH---------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 556667788889999999999999999987543 55677776777778888864 578999999999998
Q ss_pred hcCCCcc
Q psy664 329 YFGSEEE 335 (379)
Q Consensus 329 ~~~~~~~ 335 (379)
+......
T Consensus 110 W~~~f~~ 116 (133)
T cd03561 110 WSESFGG 116 (133)
T ss_pred HHHHhcC
Confidence 8765443
No 247
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.80 E-value=8.5 Score=35.93 Aligned_cols=128 Identities=11% Similarity=0.078 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc------CCChhhHHHHHHHHHHhhcCChH------------
Q psy664 137 HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ------SPKESIRKEACWAVSNITAGNRQ------------ 198 (379)
Q Consensus 137 ~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~~l~nl~~~~~~------------ 198 (379)
..-+++|+..+..++.........+ +...+..++. +.+..-+..|+..++.++.....
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 4457788888888885322221111 1233444443 23466778888998888763311
Q ss_pred HHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHH
Q psy664 199 QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGL 274 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 274 (379)
.+..+....++|.|. --.+..|-++..|++.+..+-..-++++.. ++++.++..|.+++.-|...|+.++
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-----~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-----QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-----HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 245566666777665 112346788999999999986555555443 3589999999999888888887654
No 248
>KOG2611|consensus
Probab=91.30 E-value=7.5 Score=36.88 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=99.9
Q ss_pred CchhHHHHHhCCChHHHHhcC-C-------CChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC-ChH---
Q psy664 29 HPSVETMSLDNNILYPLIDKP-K-------NRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA-DPD--- 96 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~--- 96 (379)
....|..+.+.=+.+.+-+++ + ++.-.+..+..+|..+|+.. +-.....+-+-||.+..++... |++
T Consensus 45 ~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p-ElAsh~~~v~~IP~llev~~~~~d~d~e~ 123 (698)
T KOG2611|consen 45 VALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP-ELASHEEMVSRIPLLLEVMSKGIDTDYED 123 (698)
T ss_pred hhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh-hhccCHHHHHhhhHHHHHHHhcCCCchhh
Confidence 345566677777777777777 1 12333456788889999986 4444445567889999988743 233
Q ss_pred ---HHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHH-HHHHHHHHHHhhcCCchhh---HHHhhcCcHHH
Q psy664 97 ---VLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV-VSAALRAVGNIVTGDDQQT---QVILNCSALMC 169 (379)
Q Consensus 97 ---v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i-~~~al~~L~nl~~~~~~~~---~~~~~~~~l~~ 169 (379)
+..++-.+|..++... ...+.++..|+++.+.+.-.-++-.. ..-++.++--...+.+-.. ..+. .++..
T Consensus 124 ~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~fl--ali~~ 200 (698)
T KOG2611|consen 124 NLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFL--ALIAA 200 (698)
T ss_pred hHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHH--HHHHH
Confidence 7888999999888884 56777889999999998755443222 2334443333332221111 1111 11333
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhc
Q psy664 170 LLHLIQSPKESIRKEACWAVSNITA 194 (379)
Q Consensus 170 L~~lL~~~~~~v~~~a~~~l~nl~~ 194 (379)
+..=+...+...+-++|..++.+..
T Consensus 201 va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 201 VARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3333444556788889999886544
No 249
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.25 E-value=1.3 Score=34.93 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=60.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcC------CCHHHHHHHHHH
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH------ENIEIYQKAFDI 325 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~------~~~~v~~~a~~i 325 (379)
+..+..-|.++++.++..++..|..+++.+... |...+.+.+++..+..+... .+..|+++...+
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~---------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~l 110 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGER---------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIEL 110 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH---------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHH
Confidence 556666778889999999999999999987554 55677788888888888853 578999999999
Q ss_pred HHHhcCCCccc
Q psy664 326 IEHYFGSEEED 336 (379)
Q Consensus 326 l~~~~~~~~~~ 336 (379)
|..+.....++
T Consensus 111 i~~W~~~f~~~ 121 (139)
T cd03567 111 LYSWTLELPHE 121 (139)
T ss_pred HHHHHHHhccc
Confidence 99987665443
No 250
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.08 E-value=10 Score=35.33 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=60.6
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHH
Q psy664 125 CRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQA 202 (379)
Q Consensus 125 i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~ 202 (379)
+..+++-+.+ ....++..++--|+.-+. ++..+..+...|....+.+.+.... ..+-..++-++..+...+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 5566666663 456778888888877775 5688888999999999999995443 335555555555544444333444
Q ss_pred HHhcCchHHHHHHHH
Q psy664 203 VIDANIFPSLIEILQ 217 (379)
Q Consensus 203 ~~~~~~i~~Li~ll~ 217 (379)
+.+.+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 445566666677776
No 251
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.85 E-value=1.1 Score=35.03 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=60.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC--HHHHHHHHHHHHHh
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN--IEIYQKAFDIIEHY 329 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~--~~v~~~a~~il~~~ 329 (379)
+..|..-|.++++.++..++..|..++..+... |...+.+.++++.|..+..... +.|++++..++..+
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~---------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSK---------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH---------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 455666678899999999999999999986543 5677778888999988886543 34999999999988
Q ss_pred cCCCcccc
Q psy664 330 FGSEEEDT 337 (379)
Q Consensus 330 ~~~~~~~~ 337 (379)
.....+++
T Consensus 110 ~~~f~~~~ 117 (133)
T smart00288 110 ADAFKNDP 117 (133)
T ss_pred HHHHcCCC
Confidence 77654443
No 252
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.72 E-value=4.4 Score=32.82 Aligned_cols=146 Identities=14% Similarity=0.176 Sum_probs=80.0
Q ss_pred CcHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHH
Q psy664 123 GVCRRLVELLMHD-QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQ 201 (379)
Q Consensus 123 g~i~~L~~lL~~~-~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 201 (379)
..++.|+++|+.+ +..++++++++||.|-.-++...+.+... .+. ..-...+.......... .++....++...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~--~~~~~~~~~~~~~~l~~-~~~~~~~ee~y~ 84 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDS--KSSENSNDESTDISLPM-MGISPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCc--cccccccccchhhHHhh-ccCCCchHHHHH
Confidence 4577888888875 68999999999999987776555532211 110 00011111111211111 112112333332
Q ss_pred HHHhcCchHHHHHHHHhCcH-HHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHH
Q psy664 202 AVIDANIFPSLIEILQKAEF-KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILK 279 (379)
Q Consensus 202 ~~~~~~~i~~Li~ll~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 279 (379)
. -++..|++.|++... .-...++.++.++...-......++- .+++.++..+...+...++..+.-|+.+..
T Consensus 85 ~----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 85 T----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred H----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2 345667777766532 22334566666655332333333332 468888888887666888888777777664
No 253
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.68 E-value=2.5 Score=37.46 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=89.5
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcC--cHHHHHHhhcC----CChHHHHHHHHHHHHhhcC
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAG--VCRRLVELLMH----DQHKVVSAALRAVGNIVTG 153 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~i~~~al~~L~nl~~~ 153 (379)
......+.+.+..-..+-+--++..++-++.+++ ....+...+ ....+..++.. ..+..+--++++++|+...
T Consensus 62 ~~~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~ 140 (268)
T PF08324_consen 62 SAWLILLLKILLSWPPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH 140 (268)
T ss_dssp HHHHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHhCCCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC
Confidence 3345555566555555556667777766666543 233333322 23444444433 4677788899999999976
Q ss_pred CchhhHHHhhc-C--cHHHHHHhhcCC---ChhhHHHHHHHHHHhhcCChHHH-HHHHhcCchHHHHHHHHh--CcHHHH
Q psy664 154 DDQQTQVILNC-S--ALMCLLHLIQSP---KESIRKEACWAVSNITAGNRQQI-QAVIDANIFPSLIEILQK--AEFKTR 224 (379)
Q Consensus 154 ~~~~~~~~~~~-~--~l~~L~~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~~~i~~Li~ll~~--~~~~v~ 224 (379)
.. .++.+.+. + ++..+..+.... +..++..++.++-|++....... ..-....++..+++.+.. .|+++.
T Consensus 141 ~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~ 219 (268)
T PF08324_consen 141 PP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEAL 219 (268)
T ss_dssp CC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHH
T ss_pred Cc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHH
Confidence 44 34444433 2 223333333333 68899999999999864111100 000011234455553322 589999
Q ss_pred HHHHHHHHHHhcCCCHHHH
Q psy664 225 KEAAWAITNATSGGTPDQI 243 (379)
Q Consensus 225 ~~a~~~l~nl~~~~~~~~~ 243 (379)
..++-++++++ ..+....
T Consensus 220 ~R~LvAlGtL~-~~~~~~~ 237 (268)
T PF08324_consen 220 YRLLVALGTLL-SSSDSAK 237 (268)
T ss_dssp HHHHHHHHHHH-CCSHHHH
T ss_pred HHHHHHHHHHh-ccChhHH
Confidence 99999999998 4444433
No 254
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.61 E-value=11 Score=32.77 Aligned_cols=210 Identities=17% Similarity=0.107 Sum_probs=115.8
Q ss_pred HHHHHH-hhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q psy664 83 LACLSR-LLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVI 161 (379)
Q Consensus 83 l~~L~~-lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~ 161 (379)
+|.|.. .-+..+++.+...+.+|..++.++..... -+++.+..+...+......-+++.+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 344444 55567899999999999999977622222 235666666777766666677788887776544322
Q ss_pred hhcCcHHHHHHh-----h---cCC--ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHH-HhCcHHHHHHHHHH
Q psy664 162 LNCSALMCLLHL-----I---QSP--KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEIL-QKAEFKTRKEAAWA 230 (379)
Q Consensus 162 ~~~~~l~~L~~l-----L---~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll-~~~~~~v~~~a~~~ 230 (379)
+.+..++.. . ... ..+........+..+|...++.- ..+++.+..++ +..++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 223322222 1 111 13344444566777777766622 24678888888 77888899999999
Q ss_pred HHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHH
Q psy664 231 ITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEF 309 (379)
Q Consensus 231 l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~ 309 (379)
+..++...-.+.. .....+..-|.. ..+.+.+..+ .+..+...+.-. .+.|.. -+...+..+.+
T Consensus 146 l~~Lc~~~vvd~~------s~w~vl~~~l~~~~rp~v~~~l~-~l~~l~~~~~~~------~e~~~~--~~~~~l~~lW~ 210 (234)
T PF12530_consen 146 LAPLCEAEVVDFY------SAWKVLQKKLSLDYRPLVLKSLC-SLFALVPQGAVD------SEEYEE--LKRQILQLLWE 210 (234)
T ss_pred HHHHHHHhhccHH------HHHHHHHHhcCCccchHHHHHHH-HHHHHhccccCC------hhhhhH--HHHHHHHHHHh
Confidence 9999822211111 112333333443 3444444432 233333222211 112222 23344777777
Q ss_pred hhcCCCHHHHHHHH
Q psy664 310 LQSHENIEIYQKAF 323 (379)
Q Consensus 310 l~~~~~~~v~~~a~ 323 (379)
+..+.+.+....+.
T Consensus 211 ~~~~~~~~~~~~~~ 224 (234)
T PF12530_consen 211 YTSSSDVNVASQWT 224 (234)
T ss_pred hccccccchHHHHH
Confidence 77777654444433
No 255
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.41 E-value=5.2 Score=32.55 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=81.9
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hHHHHHHHhc--CchHHHHHHHHhCc-HHHHHHHHHHHHHHhc--CC
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGN-RQQIQAVIDA--NIFPSLIEILQKAE-FKTRKEAAWAITNATS--GG 238 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~--~~i~~Li~ll~~~~-~~v~~~a~~~l~nl~~--~~ 238 (379)
.....+.++|++++..-|-.++..+.-++..+ .+. +.++ ..+..++..++..+ +.+++.++.++..+.. .+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~---l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEI---LLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566888999988888888888888776544 332 2222 46788888888764 5678888888888764 34
Q ss_pred CHHHHHHHHHc---CChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHH
Q psy664 239 TPDQIRYLIQQ---GCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIE 299 (379)
Q Consensus 239 ~~~~~~~l~~~---~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~ 299 (379)
.++..+.+.-. +++..++.+++. ......++.+|..++...+.. ..++...++
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt------~rp~~~ki~ 157 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT------FRPFANKIE 157 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc------ccchHHHHH
Confidence 44444444322 334445554543 567788899999999876654 445555553
No 256
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.18 E-value=19 Score=34.89 Aligned_cols=166 Identities=13% Similarity=0.166 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCC---ChHHHHHHHhcCcHHHHHHh
Q psy664 56 VRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDG---PNEKIQAVIDAGVCRRLVEL 131 (379)
Q Consensus 56 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~i~~L~~l 131 (379)
.....-.+.|+.+............+++..++.+... .+++....++..+-.+... +++... .++..|-..
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi 225 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSI 225 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhH
Confidence 3455556666666655555555566666666665433 3344445555555433321 211111 122333333
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC------CChhhHHHHHHHHHHhhcCChHHHH-HHH
Q psy664 132 LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS------PKESIRKEACWAVSNITAGNRQQIQ-AVI 204 (379)
Q Consensus 132 L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~~~~-~~~ 204 (379)
. +-.++...+-.++.|++...-.+ ..+..|..+|.+ .+..+.+-|+..+..+..+..+... .+-
T Consensus 226 ~--~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 226 V--NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred h--cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 2 22267777888999998643222 234567777732 2355667788888887665532222 222
Q ss_pred hcC--chHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 205 DAN--IFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 205 ~~~--~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
-.- +++.+...++.++..+-.+.+..+.+++
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 222 7888888888888888888888888887
No 257
>KOG0413|consensus
Probab=90.11 E-value=1.9 Score=44.18 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHH
Q psy664 137 HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEI 215 (379)
Q Consensus 137 ~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~l 215 (379)
+.++..+.-+|++++-..+...+ ..+|.+++=|...+ ..+|....-+++.+|.+.. .++ ...+|.+-..
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~-d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMT-DRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHH-HHhhHHHHHH
Confidence 55677888899999865544433 45788888776443 5666666666666664322 222 3688999999
Q ss_pred HHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC--hHHHHHhhccCCHHHHHHHHHHHHHHHHHc
Q psy664 216 LQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGC--IEPFCELLTLLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 216 l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~--i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 281 (379)
|.++++-+|+++...|++++..+-.. =.|. +..+..++ +..++++.-+-..++.++...
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK------w~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK------WNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhh------cchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998533211 1121 23333333 446778887777777777643
No 258
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.06 E-value=10 Score=31.61 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=84.4
Q ss_pred hHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q psy664 42 LYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 42 i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~ 120 (379)
++.++++. +++..++..|..++.-+.+..=-.| ..++|.++.+..++++.++..|...+..+....+.....-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45566655 8889999999999988877542222 34899999999999999999999999999855443333222
Q ss_pred hcCcHHHHHHhh---cCCCh-HH---HHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC--------ChhhHHHH
Q psy664 121 DAGVCRRLVELL---MHDQH-KV---VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP--------KESIRKEA 185 (379)
Q Consensus 121 ~~g~i~~L~~lL---~~~~~-~i---~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--------~~~v~~~a 185 (379)
..| +..-..+- ..+.. .. ...-+.-+-.+..++...+.. ++..+.+.++.. .+.-....
T Consensus 85 ~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 85 SEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHHHH
Confidence 222 33222221 11111 11 344455555555544444443 344555555432 23445556
Q ss_pred HHHHHHhhc
Q psy664 186 CWAVSNITA 194 (379)
Q Consensus 186 ~~~l~nl~~ 194 (379)
+++..|++.
T Consensus 159 ~Fla~nLA~ 167 (187)
T PF12830_consen 159 LFLAENLAT 167 (187)
T ss_pred HHHHHHHhc
Confidence 666666654
No 259
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.37 E-value=12 Score=36.71 Aligned_cols=218 Identities=14% Similarity=0.048 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc-----------CCChHHHHHHHHHHHHhhcCCchhhHHH
Q psy664 93 ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM-----------HDQHKVVSAALRAVGNIVTGDDQQTQVI 161 (379)
Q Consensus 93 ~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~-----------~~~~~i~~~al~~L~nl~~~~~~~~~~~ 161 (379)
++.+|...|-..|..+...- -+..++..|+.+.. .-++.++...+..|..=... .-
T Consensus 249 ~~~~V~~~ae~~LKr~~~~~-------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A------a~ 315 (501)
T PF13001_consen 249 SNSSVSDRAEDLLKRLSVSL-------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA------AT 315 (501)
T ss_pred CcchHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH------Hh
Confidence 44566666666676666441 12245666776655 23566777666666542110 00
Q ss_pred hhcCcHHHHHHhhcCC--ChhhHHHHHHHH---HHhhcC-ChHHH---HHHHhcCchHHHHH----HHHhCcHHHHHHHH
Q psy664 162 LNCSALMCLLHLIQSP--KESIRKEACWAV---SNITAG-NRQQI---QAVIDANIFPSLIE----ILQKAEFKTRKEAA 228 (379)
Q Consensus 162 ~~~~~l~~L~~lL~~~--~~~v~~~a~~~l---~nl~~~-~~~~~---~~~~~~~~i~~Li~----ll~~~~~~v~~~a~ 228 (379)
.-...+..+..-+... +..++..+...+ .....+ .+..+ ...+..++.|.+-. -....+...|..++
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1122333444445544 456666666555 444332 33332 33444455555510 01134678999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH-H
Q psy664 229 WAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK-I 307 (379)
Q Consensus 229 ~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~-l 307 (379)
.+|+.+. ...+... .-+.+.+..|++-|..++++++..+-.+|..++..-..... .........++. +
T Consensus 396 e~lG~L~-~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~--------~~~~~~~~~~~~l~ 464 (501)
T PF13001_consen 396 ETLGLLA-KRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD--------DEDEQKRLLLELLL 464 (501)
T ss_pred HHHHHHH-ccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc--------chhHHHHHHHHHHH
Confidence 9999998 4444322 12346688888888888899999999999999876544310 000000000111 1
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 308 EFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 308 ~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
.....+....++..|.+-....|.-++
T Consensus 465 ~~~~~~~~~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 465 LSYIQSEVRSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HhhccchhHHHHHHHHHHHHHhCCccc
Confidence 222234456677788888888887544
No 260
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=89.37 E-value=20 Score=34.05 Aligned_cols=235 Identities=11% Similarity=0.081 Sum_probs=130.7
Q ss_pred HHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhcCCCh
Q psy664 36 SLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA-DPDVLADACWAISYLSDGPN 113 (379)
Q Consensus 36 i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~aL~~l~~~~~ 113 (379)
.+....+..|+.++ +.|+.-+.....+|.++-... ...+..+...+...+.+++... ...-...++..++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~-~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKF-PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH--TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 44455667788888 888888888888888876654 4455556677777888888744 45666778888888776522
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHh
Q psy664 114 EKIQAVIDAGVCRRLVELLMHDQH-KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNI 192 (379)
Q Consensus 114 ~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 192 (379)
...+.....=....++.+...+.- .....-..++..++..++.....+ +..+++.=-..++.-....+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 111111111123445556555532 334555556665555454444322 12222222222233233333445555
Q ss_pred hc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc---CChHHHHHhhcc--C---C
Q psy664 193 TA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQ---GCIEPFCELLTL--L---D 263 (379)
Q Consensus 193 ~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~---~~i~~L~~lL~~--~---d 263 (379)
.. ..+.....+. ..+...+..++.+.+.+|-+.|+....| +... .++.. .+++.+..-|.. . +
T Consensus 283 l~~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAl~~w~n------~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn 354 (409)
T PF01603_consen 283 LEVLPPEEFQKIM-VPLFKRLAKCISSPHFQVAERALYFWNN------EYFL-SLISQNSRVILPIIFPALYRNSKNHWN 354 (409)
T ss_dssp HTT--HHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHGGGGS------HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred HHhcCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHCC------HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence 44 3334444333 3577888888999999999888765443 2222 22222 245566655532 1 4
Q ss_pred HHHHHHHHHHHHHHHHHcHHh
Q psy664 264 AKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 264 ~~v~~~al~~L~~l~~~~~~~ 284 (379)
..++..+..++..+.+.....
T Consensus 355 ~~Vr~~a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 355 QTVRNLAQNVLKILMEMDPKL 375 (409)
T ss_dssp TTHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHH
Confidence 578999999998888877654
No 261
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.89 E-value=6.1 Score=33.56 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=87.9
Q ss_pred hhcCChHHHHHHHhcCchHHHHHHHHhC-----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHH
Q psy664 192 ITAGNRQQIQAVIDANIFPSLIEILQKA-----EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266 (379)
Q Consensus 192 l~~~~~~~~~~~~~~~~i~~Li~ll~~~-----~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 266 (379)
..++.|+....++++.+--.+...|... ...+|..++.+|+.++..+++..+.++....+++....+++.+..--
T Consensus 126 claShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElS 205 (315)
T COG5209 126 CLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELS 205 (315)
T ss_pred HHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHH
Confidence 3356677677777776544444444432 24578889999999998899999999999999999999999877766
Q ss_pred HHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHH-----HHhhcCCCHHHHHHHHHHHHHh
Q psy664 267 IQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKI-----EFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 267 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l-----~~l~~~~~~~v~~~a~~il~~~ 329 (379)
+..+...+..++...... +-+|+.++..-++... .++.+....++-+.+..+--++
T Consensus 206 ktvaifI~qkil~dDvGL-------qYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRL 266 (315)
T COG5209 206 KTVAIFIFQKILGDDVGL-------QYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRL 266 (315)
T ss_pred HHHHHHHHHHHhccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheee
Confidence 777777788777655443 2356666665544333 2344555555555555443333
No 262
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=88.74 E-value=21 Score=33.44 Aligned_cols=264 Identities=15% Similarity=0.126 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc----C-------CChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF----H-------ADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~-------~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
..+..-+..|.-.|.+.-+..+..+.......=++.+.++++ . .+..+..+|+.+|+.+..++. ....
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~-i~~~ 82 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPE-IVST 82 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHH-HHhh
Confidence 344555667777777777766555666666666777777664 2 257888999999999887753 2222
Q ss_pred HHhc---CcHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh----c-CCChhhHHHHHHH
Q psy664 119 VIDA---GVCRRLVELLMHD--QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI----Q-SPKESIRKEACWA 188 (379)
Q Consensus 119 ~~~~---g~i~~L~~lL~~~--~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----~-~~~~~v~~~a~~~ 188 (379)
+-+. -++...+..+.++ +-.+....+|+|+.--.+. .++....+..++..+ + -++..+..+++.+
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 2111 1456666666553 5578888999988532221 233334444444444 2 3457889999999
Q ss_pred HHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc--CCCHHHHHHH---HHcC---------ChHH
Q psy664 189 VSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS--GGTPDQIRYL---IQQG---------CIEP 254 (379)
Q Consensus 189 l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~l---~~~~---------~i~~ 254 (379)
+.++....++....-.+ ..++.++..+-+...+++..|......+.. ..+......+ .+.. +.+.
T Consensus 158 ~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 236 (372)
T PF12231_consen 158 YKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCER 236 (372)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHH
Confidence 99998766554332221 367788877777777777766555544321 1111111111 1111 1222
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 255 FCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 255 L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
|..++..++......-+|...-.+-...... .-.+. ..++...+..-+++++.++..|...-..+.
T Consensus 237 L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~-----~w~~~-----n~wL~v~e~cFn~~d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 237 LKEMIKSKDEYKLAMQIWSVVILLLGSSRLD-----SWEHL-----NEWLKVPEKCFNSSDPQVKIQAFKAWRRLI 302 (372)
T ss_pred HHHHHhCcCCcchHHHHHHHHHHHhCCchhh-----ccHhH-----hHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4444545233222222333322222111000 00111 123555666778899999999886666554
No 263
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.38 E-value=13 Score=30.85 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=58.4
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQA 202 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 202 (379)
.++.++++.-+++..++..|+..++-+....-... ...+|.++.+..++++.++..|...+..+....+..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 57788888889999999999999998775321111 136899999999999999999999999997666555443
No 264
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.32 E-value=16 Score=32.32 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=89.8
Q ss_pred hHHHHHhCCChHHHHhcC-CCC----hhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHH
Q psy664 32 VETMSLDNNILYPLIDKP-KNR----LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAIS 106 (379)
Q Consensus 32 ~r~~i~~~g~i~~Ll~lL-~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~ 106 (379)
.|-.+.=.+.+|.++.-+ +++ ......++..|+.+|.... .. ....++....+-=..+..+...+++..+.
T Consensus 103 ~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-~~---~La~il~~ya~~~fr~~~dfl~~v~~~l~ 178 (262)
T PF14225_consen 103 SRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-LP---NLARILSSYAKGRFRDKDDFLSQVVSYLR 178 (262)
T ss_pred ccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-Cc---cHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 354454555677777777 333 2556678888999986531 11 12223333332212233566666665554
Q ss_pred HhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHH
Q psy664 107 YLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186 (379)
Q Consensus 107 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 186 (379)
.-.. + + .+...+..++.+|.+.-+.++..++.+|..+...-+-... ...+++..+.++++.+ .-.+|.
T Consensus 179 ~~f~-P-~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~---~~~eAL 246 (262)
T PF14225_consen 179 EAFF-P-D-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD---LWMEAL 246 (262)
T ss_pred HHhC-c-h-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc---cHHHHH
Confidence 3221 1 1 1234577899999999999999999999999876544433 4556888899999765 445666
Q ss_pred HHHHHhh
Q psy664 187 WAVSNIT 193 (379)
Q Consensus 187 ~~l~nl~ 193 (379)
.++-++.
T Consensus 247 ~VLd~~v 253 (262)
T PF14225_consen 247 EVLDEIV 253 (262)
T ss_pred HHHHHHH
Confidence 6666543
No 265
>KOG4464|consensus
Probab=88.02 E-value=17 Score=33.92 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=64.0
Q ss_pred CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CC---H-HHHHHHHHHHHHHHHHcHHhhhhcCCcch
Q psy664 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LD---A-KIIQVALNGLENILKLGEEEAKQTGSVNP 293 (379)
Q Consensus 219 ~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d---~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 293 (379)
+|..+..++..+|+|++ .+++.......+......++..+.. -+ + .+..-=+. |-+++.......+
T Consensus 109 ~d~~vi~EslKCLcNlv-f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlr-LLflltale~~~R------- 179 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLV-FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLR-LLFLLTALETDHR------- 179 (532)
T ss_pred cchHHHHHHHHHHHHHH-hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHH-HHHHHHHhhHHHH-------
Confidence 36789999999999998 6676666666676666666665422 11 1 11111111 1222222221211
Q ss_pred HHHHHHHhccHHHHHHhhcCC------------CHHHHHHHHHHHHHhcCCCc
Q psy664 294 YVVLIEECYGLDKIEFLQSHE------------NIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 294 ~~~~i~~~g~l~~l~~l~~~~------------~~~v~~~a~~il~~~~~~~~ 334 (379)
.+++.+.+|++.+.++++++ +++--..|..+|..||+...
T Consensus 180 -sql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 180 -SQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred -HHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence 36788889999888887543 23556688888888887543
No 266
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=87.60 E-value=6.6 Score=28.78 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=55.4
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy664 249 QGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEH 328 (379)
Q Consensus 249 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~ 328 (379)
...+..|+.-+..++......++..+..++.... ....+.+.|+.+-+.++...-++..+.....+++.
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-----------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-----------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-----------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3456667777777777788889999999887543 34789999999999999988889998888888765
No 267
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=87.57 E-value=19 Score=31.74 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=101.2
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch-------hhHHHhhcCcHHHHHHhhcCCC----hhhHHHHHHHHHH
Q psy664 123 GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ-------QTQVILNCSALMCLLHLIQSPK----ESIRKEACWAVSN 191 (379)
Q Consensus 123 g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~-------~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~l~n 191 (379)
|+-+.+++-+.++. ..+.++..|..++.-.+. .+-.+.-...+|.+..-+.+++ ......++..|+.
T Consensus 64 Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 44444555555543 456677777777643221 1222222345677777777666 1344566667777
Q ss_pred hhcCChHHHHHHHhcCchHHHHHHHHhCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHH
Q psy664 192 ITAGNRQQIQAVIDANIFPSLIEILQKAE----FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKII 267 (379)
Q Consensus 192 l~~~~~~~~~~~~~~~~i~~Li~ll~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 267 (379)
+|.... ..-+..++.....+. .+..+.++..|+.-. .++. +...+..|+.+|..+-+.++
T Consensus 142 ~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f---~P~~-----~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 142 VAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF---FPDH-----EFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---Cchh-----HHHHHHHHHHHHhCCcHHHH
Confidence 663211 123444444444443 344445555555432 1221 12346789999999999999
Q ss_pred HHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 268 QVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 268 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
..++..|..++...+-.. + ...+.+..+.+++..+.. ..|..+++..-.
T Consensus 206 ~~~L~iL~~ll~~~d~~~-------~-----~~~dlispllrlL~t~~~---~eAL~VLd~~v~ 254 (262)
T PF14225_consen 206 RKTLQILKVLLPHVDMRS-------P-----HGADLISPLLRLLQTDLW---MEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHhccccCCC-------C-----cchHHHHHHHHHhCCccH---HHHHHHHHHHHh
Confidence 999999999998765331 1 233357788888877654 477777776543
No 268
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.47 E-value=29 Score=33.61 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--C
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK------AEFKTRKEAAWAITNATSGGTPDQIRYLIQQ--G 250 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~------~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~--~ 250 (379)
.+..+.+..++.||+.+.-. +..+..|.++|.. .+..+.+-|+..+..++.+...+....+--. -
T Consensus 229 ~~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 229 VSLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred cccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 37777888899998754322 1245667777732 2456777899999888743322333222111 2
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHHH
Q psy664 251 CIEPFCELLTLLDAKIIQVALNGLENILK 279 (379)
Q Consensus 251 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 279 (379)
+++.|...++.++..+-..++..+.+++.
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 67778888888887777788888888884
No 269
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.68 E-value=16 Score=30.15 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=54.7
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAG-NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
-.+|.+..-|...+.-.+--|...+..+... ..+.+-.++- .++..+...|.+.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4678888888777766777777777776554 5555555554 678888889999999999999999999963
No 270
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=86.46 E-value=3.3 Score=32.64 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=56.3
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc-CCCHH---HHHHHHHHHH
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS-HENIE---IYQKAFDIIE 327 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~-~~~~~---v~~~a~~il~ 327 (379)
+..|..-|.+.++.++..|+..|..++..++.. |...+....+++.|..+.. ..... |++++..+|.
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~---------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPR---------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH---------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH---------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 455666677889999999999999999987654 4566666677888888665 34444 8999999999
Q ss_pred HhcCCCc
Q psy664 328 HYFGSEE 334 (379)
Q Consensus 328 ~~~~~~~ 334 (379)
.+.....
T Consensus 115 ~W~~~f~ 121 (140)
T PF00790_consen 115 EWAEAFK 121 (140)
T ss_dssp HHHHHTT
T ss_pred HHHHHHC
Confidence 8766543
No 271
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=86.43 E-value=5.4 Score=31.51 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=56.8
Q ss_pred hHHHHHhhc-cCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH-HHHhhcC---CCHHHHHHHHHHH
Q psy664 252 IEPFCELLT-LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK-IEFLQSH---ENIEIYQKAFDII 326 (379)
Q Consensus 252 i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~-l~~l~~~---~~~~v~~~a~~il 326 (379)
+..|..-|. ..++.++..++..|..+++.++.. |...+.+.++++. |..+... .+..|+.+...+|
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~---------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li 110 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR---------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALI 110 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH---------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHH
Confidence 334444455 468889999999999999988654 4567777788886 8877752 3568999999999
Q ss_pred HHhcCCCcccc
Q psy664 327 EHYFGSEEEDT 337 (379)
Q Consensus 327 ~~~~~~~~~~~ 337 (379)
+.+...-.+++
T Consensus 111 ~~W~~~f~~~~ 121 (141)
T cd03565 111 QAWADAFRGSP 121 (141)
T ss_pred HHHHHHhCCCc
Confidence 99876554443
No 272
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=86.41 E-value=22 Score=31.11 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=46.3
Q ss_pred hhhHHHHHHhhcCCChH--------HHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHHHHH
Q psy664 80 APALACLSRLLFHADPD--------VLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRAVGN 149 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~--------v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~L~n 149 (379)
..++|.++++++.++.- +-+....++..++ .|-++.|.+++.++ +.-++..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 35889999999765531 1122222333333 34566777777775 56788999999999
Q ss_pred hhcCCchhhHHHh
Q psy664 150 IVTGDDQQTQVIL 162 (379)
Q Consensus 150 l~~~~~~~~~~~~ 162 (379)
++...+..+..++
T Consensus 140 l~~~~~~~Re~vi 152 (249)
T PF06685_consen 140 LVHEGPISREEVI 152 (249)
T ss_pred HHHcCCCCHHHHH
Confidence 9987766666554
No 273
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=86.33 E-value=2.9 Score=37.09 Aligned_cols=124 Identities=16% Similarity=0.130 Sum_probs=73.9
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhH-hh--hHHHHHHhhcCC---ChHHHHHHHHHHHHhcCCChHHH-HHHHhc
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKV-AP--ALACLSRLLFHA---DPDVLADACWAISYLSDGPNEKI-QAVIDA 122 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~--~l~~L~~lL~~~---d~~v~~~a~~aL~~l~~~~~~~~-~~~~~~ 122 (379)
+.+...+-.++++++|+.... .....+.. .+ ++..+..+..+. +..++..+...+.|++....... ..-...
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHP-PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSC-CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CCcHHHHHHHHHHHHHhhCCC-ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 346677778999999998875 33333222 22 233333333333 78899999999998873211111 000111
Q ss_pred CcHHHHHHhhc-C-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh
Q psy664 123 GVCRRLVELLM-H-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI 174 (379)
Q Consensus 123 g~i~~L~~lL~-~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 174 (379)
..+..+++.+. . .+++....++-++|++...++...+.....|+-..+...-
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~ 253 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKA 253 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHH
Confidence 24566666333 3 5899999999999999977666655444445554444443
No 274
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.74 E-value=6.3 Score=31.06 Aligned_cols=73 Identities=10% Similarity=-0.035 Sum_probs=55.3
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHHHHHHH
Q psy664 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL------LDAKIIQVALNGLENILKL 280 (379)
Q Consensus 208 ~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~~ 280 (379)
.+..+.+-+.++++.++..|+..|-.++.......-..+...+++..|+.++.. .+..|+..++..+..-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455566777888999999999888888765555555667778888899998853 4678999888887766543
No 275
>KOG0301|consensus
Probab=85.28 E-value=42 Score=33.42 Aligned_cols=164 Identities=9% Similarity=0.059 Sum_probs=81.6
Q ss_pred hcCCChHHHHHHHHHHHHhcCCChHHHHHHH---hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc--
Q psy664 90 LFHADPDVLADACWAISYLSDGPNEKIQAVI---DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC-- 164 (379)
Q Consensus 90 L~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~-- 164 (379)
+..-..+++..|+.+|..+..+..-....+- ...++..++..+. .++..+.-++++|.|+..+ +...+.+...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLE 630 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 3344677777888888877766543322222 1235555665555 4566778899999999976 4444433322
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-----cHHHHHHHHHHHHHHhcCCC
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-----EFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-----~~~v~~~a~~~l~nl~~~~~ 239 (379)
..+..+...-..++..++....-..-|.+.. .++...+.+..+.+...+... |.+.....+.||++++. .+
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t-~~ 706 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT-VD 706 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc-cc
Confidence 1111111111222345554444444443321 111111234444444444432 44556667778888763 33
Q ss_pred HHHHHHHHHcCChHHHHHhhc
Q psy664 240 PDQIRYLIQQGCIEPFCELLT 260 (379)
Q Consensus 240 ~~~~~~l~~~~~i~~L~~lL~ 260 (379)
.. ...+.+.--+..+..-+.
T Consensus 707 ~~-~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 707 AS-VIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred HH-HHHHHHhcCHHHHHHHHH
Confidence 22 333444334555555444
No 276
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=84.73 E-value=8.5 Score=29.04 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=51.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHh-----h-cCCCHHHHHHHHHH
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFL-----Q-SHENIEIYQKAFDI 325 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l-----~-~~~~~~v~~~a~~i 325 (379)
+..|..-|.+.++.++..++..|..++..++.. |...+....++..+..+ . ...+..|++++..+
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~---------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l 109 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGER---------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIEL 109 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH---------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHH
Confidence 555666677889999999999999999988654 44556555555555332 1 23478999999999
Q ss_pred HHHhc
Q psy664 326 IEHYF 330 (379)
Q Consensus 326 l~~~~ 330 (379)
++.+.
T Consensus 110 ~~~w~ 114 (115)
T cd00197 110 VQLWA 114 (115)
T ss_pred HHHHh
Confidence 98775
No 277
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=84.73 E-value=20 Score=32.35 Aligned_cols=126 Identities=13% Similarity=0.216 Sum_probs=87.2
Q ss_pred HHhhcCcHHHHHHhhcC-----------------------CChhhHHHHHHHHHHhhcCChHHH----------------
Q psy664 160 VILNCSALMCLLHLIQS-----------------------PKESIRKEACWAVSNITAGNRQQI---------------- 200 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL~~-----------------------~~~~v~~~a~~~l~nl~~~~~~~~---------------- 200 (379)
.+.+.|++|.|-++.+. ++..+|..-++.+-+++.+.....
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 45667888887776531 112467777788888776332111
Q ss_pred -----HHHHhcCchHHHHHHHHhC--cHHHHHHHHHHHHHHhcCCCH-HHHHHHHHcCChHHHHHhhccC---CHHHHHH
Q psy664 201 -----QAVIDANIFPSLIEILQKA--EFKTRKEAAWAITNATSGGTP-DQIRYLIQQGCIEPFCELLTLL---DAKIIQV 269 (379)
Q Consensus 201 -----~~~~~~~~i~~Li~ll~~~--~~~v~~~a~~~l~nl~~~~~~-~~~~~l~~~~~i~~L~~lL~~~---d~~v~~~ 269 (379)
..--+.|++..+++.+... +...|---+.|+-.++.+.+. ....++.+.|.++.+++-+-++ +..+...
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 0112347888899888764 566777788888888866666 3444778999999999877543 3468889
Q ss_pred HHHHHHHHHHHcHHhh
Q psy664 270 ALNGLENILKLGEEEA 285 (379)
Q Consensus 270 al~~L~~l~~~~~~~~ 285 (379)
..+.|+-+++......
T Consensus 164 ~FDLLGELiK~n~~~f 179 (303)
T PF12463_consen 164 NFDLLGELIKFNRDAF 179 (303)
T ss_pred HHHHHHHHHCCCHHHH
Confidence 9999999999876653
No 278
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.52 E-value=18 Score=32.42 Aligned_cols=70 Identities=6% Similarity=0.064 Sum_probs=48.8
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh-HHHhhcCcHHHHHHhh----c--------CCChhhHHHHHHHHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT-QVILNCSALMCLLHLI----Q--------SPKESIRKEACWAVS 190 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL----~--------~~~~~v~~~a~~~l~ 190 (379)
++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+...+ . ..+..+...|.-++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999987543332 2355667665554433 2 233556666666666
Q ss_pred Hhh
Q psy664 191 NIT 193 (379)
Q Consensus 191 nl~ 193 (379)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 663
No 279
>KOG0392|consensus
Probab=84.31 E-value=34 Score=36.73 Aligned_cols=239 Identities=15% Similarity=0.113 Sum_probs=126.7
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHH-HHHHHhcCcHHHHHHhh---------cC-CChHHHHHHHHHHH
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEK-IQAVIDAGVCRRLVELL---------MH-DQHKVVSAALRAVG 148 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~-~~~~~~~g~i~~L~~lL---------~~-~~~~i~~~al~~L~ 148 (379)
.+.+..|+..+-++..++|+.+..++..+....... -...++. ..-+++..+ .. --..+++.+.++|+
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 467778888888889999999998888776321111 1111111 111221111 11 12357889999999
Q ss_pred HhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHH
Q psy664 149 NIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAA 228 (379)
Q Consensus 149 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~ 228 (379)
.+....++... ...+..+.+++..+..+++.--...+....+--.+....+. ..+++.++..+.+.+.+++..|+
T Consensus 155 ~~l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 155 AYLKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHHH
Confidence 88765332221 23567778887776655554444444432221112222111 24677788888999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHH--HcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH
Q psy664 229 WAITNATSGGTPDQIRYLI--QQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK 306 (379)
Q Consensus 229 ~~l~nl~~~~~~~~~~~l~--~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~ 306 (379)
..+.-+.+..-....+.+. .+-....+..+.+-... .......+..++...+... -+.+.=.+-|.+.+
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s--~~si~~ll~~l~~~~evl~-------l~~~~n~~~~Lvp~ 300 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSS--TASIMHLLDELCIENEVLD-------LFEQQNLEVGLVPR 300 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchh--hHHHHHHHHHHhhhHHHHH-------HHHHhhhhhccchh
Confidence 9888765422111112221 12223333333331111 1111122222222221110 00111112466777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 307 IEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 307 l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
+...+.|.-..++..+...+..|.+.+
T Consensus 301 ~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 301 LWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777888887888888888888888765
No 280
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.21 E-value=30 Score=30.90 Aligned_cols=116 Identities=11% Similarity=0.157 Sum_probs=69.4
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHH-HHHHhcCchHHHHHHHH------------hCcHHHHHHHHHHH
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQI-QAVIDANIFPSLIEILQ------------KAEFKTRKEAAWAI 231 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~~~i~~Li~ll~------------~~~~~v~~~a~~~l 231 (379)
-++|.++.++++.++.+|..++.++..+....+... ..+.+.|+.+.+.+.+. .....+...|.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 368999999999999999999999999876544333 33566676666555443 23456777788888
Q ss_pred HHHhcC----C---CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 232 TNATSG----G---TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 232 ~nl~~~----~---~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
..++.. + .......++..|++..+...-....+.++...+..+..++..
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 777431 1 111222222222222222111122366777666666666554
No 281
>KOG0803|consensus
Probab=84.10 E-value=52 Score=36.02 Aligned_cols=198 Identities=11% Similarity=0.144 Sum_probs=108.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHH----HHHhhcCCChhhHHHHHHHHHHhhcCChHHH
Q psy664 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMC----LLHLIQSPKESIRKEACWAVSNITAGNRQQI 200 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~----L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 200 (379)
+..+++-|...|+..+..|+..++++.... ..... .|++|. ..++..+.+..||...--+++.+...-.+.+
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~--~~e~~--~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTS--DTEEL--KGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccc--cchHH--hhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677777889999999999999998543 22222 234443 4456677889999999999999876555544
Q ss_pred HHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc-------------------c
Q psy664 201 QAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT-------------------L 261 (379)
Q Consensus 201 ~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-------------------~ 261 (379)
.+.++ .+++...-...+.+..+-..|-..+..........+.-.+.+..+.....+.+. .
T Consensus 119 sp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~ 197 (1312)
T KOG0803|consen 119 SPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELES 197 (1312)
T ss_pred hHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHH
Confidence 44443 334433333333455555555555555432111111112222222222222211 1
Q ss_pred CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 262 LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 262 ~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
.-.++...++.++..++.......+ .......+--.--.+.+..+..|+.+.+......++-.+.+
T Consensus 198 k~~Rvi~ssLl~l~~l~~~~~~~~e----l~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~ 263 (1312)
T KOG0803|consen 198 KYQRVISSSLLLLLKLFKITGDEEE----LHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLID 263 (1312)
T ss_pred hhHHHHHHHHHHHHHHHHHhCchHh----hhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHh
Confidence 1235666677777777643322211 11000111112235677888999998888877766665544
No 282
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=84.02 E-value=30 Score=30.61 Aligned_cols=217 Identities=12% Similarity=0.085 Sum_probs=125.1
Q ss_pred hcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhcCCChHHHHHHHhcC
Q psy664 47 DKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH--ADPDVLADACWAISYLSDGPNEKIQAVIDAG 123 (379)
Q Consensus 47 ~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g 123 (379)
..| +++...+..++.+|+.....-.+. .....-+..|+.++.+ .|......++.++..|.....-.... ...
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~~~ 80 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--AVK 80 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--HHH
Confidence 445 778888889999999887654211 1223334444444332 45555555566666666332211111 112
Q ss_pred cHHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChHHH
Q psy664 124 VCRRLVELLM--HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP-KESIRKEACWAVSNITAGNRQQI 200 (379)
Q Consensus 124 ~i~~L~~lL~--~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~ 200 (379)
++..+.+-.. +--...|..+...+..+........+. ...+++..+++.++.+ ||.-...+...+..+...-+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--- 156 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--- 156 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---
Confidence 3344443222 224556788888888887543222211 2235677777777654 57777777777776654332
Q ss_pred HHHHhcCchHHHHHHHHh----------CcH--HHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHH
Q psy664 201 QAVIDANIFPSLIEILQK----------AEF--KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQ 268 (379)
Q Consensus 201 ~~~~~~~~i~~Li~ll~~----------~~~--~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~ 268 (379)
+ ....+.+.+.+.. +|+ -.+..-..+|.+.. ..++..... .++.|++-|+++.+.++.
T Consensus 157 ---~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl-~s~~~fa~~-----~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 157 ---I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCL-SSTPLFAPF-----AFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred ---c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHh-cCcHhhHHH-----HHHHHHHHHcCCCcHHHH
Confidence 1 3445555555532 232 13445555666655 444444333 488999999999889999
Q ss_pred HHHHHHHHHHHHcH
Q psy664 269 VALNGLENILKLGE 282 (379)
Q Consensus 269 ~al~~L~~l~~~~~ 282 (379)
.++.+|..++..-+
T Consensus 227 D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 227 DSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHCC
Confidence 99999988877543
No 283
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.40 E-value=7.9 Score=30.19 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=67.6
Q ss_pred CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch-hhHHHhhcCcHHHH
Q psy664 92 HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ-QTQVILNCSALMCL 170 (379)
Q Consensus 92 ~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L 170 (379)
.+|.+.....|..+..-. .... .++..|...|.++++.++..|+..|--++..... ....+....++..+
T Consensus 15 ~~D~~~il~icd~I~~~~----~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 15 EPDWALNLELCDLINLKP----NGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred CccHHHHHHHHHHHhCCC----CCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 455566556655554221 1111 3567788889999999999999999999987655 55556666888889
Q ss_pred HHhhcC---CChhhHHHHHHHHHHhhc
Q psy664 171 LHLIQS---PKESIRKEACWAVSNITA 194 (379)
Q Consensus 171 ~~lL~~---~~~~v~~~a~~~l~nl~~ 194 (379)
.+++.. .+..|+..+...+.+-+.
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999975 358899999988887653
No 284
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.10 E-value=14 Score=36.86 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=62.1
Q ss_pred hHhhhHHHHHHhhc----CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc---CCChHHHHHHHHHHHHh
Q psy664 78 KVAPALACLSRLLF----HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM---HDQHKVVSAALRAVGNI 150 (379)
Q Consensus 78 ~~~~~l~~L~~lL~----~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~---~~~~~i~~~al~~L~nl 150 (379)
.....++.+.+.|. ..+.+.+...+.+|+|+.... .++.+..++. ..+..++..|+++|..+
T Consensus 439 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~ 507 (574)
T smart00638 439 VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNL 507 (574)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 34556666666554 456667778888999887543 2344444444 23567999999999988
Q ss_pred hcCCchhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHHHH
Q psy664 151 VTGDDQQTQVILNCSALMCLLHLIQSP--KESIRKEACWAVSN 191 (379)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~n 191 (379)
+...+... -+.+..++.+. ++++|..|+.++..
T Consensus 508 a~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 508 AKRDPRKV--------QEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHhCchHH--------HHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 75443332 34566666543 48899999887764
No 285
>KOG1949|consensus
Probab=83.01 E-value=55 Score=32.98 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=128.4
Q ss_pred hHhhhHHHHHH-hhcCCChHHHHHHHHHHHHhcCCC--hHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCC
Q psy664 78 KVAPALACLSR-LLFHADPDVLADACWAISYLSDGP--NEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 78 ~~~~~l~~L~~-lL~~~d~~v~~~a~~aL~~l~~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~ 154 (379)
+..++++-++. .+.-....+....-..|++..... +...+.++-.=.=|.|.+-|+-.+..++..|+..+-++.--.
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 44556665543 233333233333334444433221 122222332333455666677889999999999999887432
Q ss_pred chh-----hHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHH-hCcHHHHHHHH
Q psy664 155 DQQ-----TQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ-KAEFKTRKEAA 228 (379)
Q Consensus 155 ~~~-----~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~-~~~~~v~~~a~ 228 (379)
++. .+.+++ +-...+.++|.++-+.||..|..-++.+.....+.+-.-+-..++..+.+-+. +...+||-...
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf 284 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVF 284 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHh
Confidence 221 122332 23567889999999999999998888876543333322222233444443332 33457888887
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHH
Q psy664 229 WAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIE 308 (379)
Q Consensus 229 ~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~ 308 (379)
..|..++. ++..- .+.+. +++.+-..|.++...|+..+...|..|-..-. ...+ .-=-++.+.
T Consensus 285 ~gl~~~l~--np~sh-~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra------------~~f~-~I~~~d~~l 347 (1005)
T KOG1949|consen 285 KGLPMILD--NPLSH-PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA------------AKFW-KICPMDHIL 347 (1005)
T ss_pred cCcHHHHc--Cccch-hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhhh------------hhhh-ccccHHHHH
Confidence 77777753 22211 12222 24566666777778899888887776643221 1111 111234444
Q ss_pred HhhcCCCHHHHH-HHHHHHHHhcCCC
Q psy664 309 FLQSHENIEIYQ-KAFDIIEHYFGSE 333 (379)
Q Consensus 309 ~l~~~~~~~v~~-~a~~il~~~~~~~ 333 (379)
.-+..++..+.+ .+.-|+..|+...
T Consensus 348 ~~L~~d~~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 348 VRLETDSRPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred HHHhccccHHHHHHHHHHHHhhcCCC
Confidence 445555555544 4555555566543
No 286
>KOG1525|consensus
Probab=82.71 E-value=38 Score=36.87 Aligned_cols=148 Identities=11% Similarity=0.131 Sum_probs=92.6
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHH
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 244 (379)
+++|.|-.-|.+.+..+|..|...++.|......+.. --...+....+.-+.+.++++|.+++....+++.. ++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-Cchhhh
Confidence 6778888888888999999999999998764433322 11124556666667778899999999999998744 444333
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHH
Q psy664 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFD 324 (379)
Q Consensus 245 ~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~ 324 (379)
. .+....+.....+.+.+++..+....+-..... -.+... .+...-..+.+....|+..|..
T Consensus 337 ~---~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~--------------l~~~~~-ll~~~~eR~rDKk~~VR~~Am~ 398 (1266)
T KOG1525|consen 337 A---STILLALRERDLDEDVRVRTQVVIVACDVMKFK--------------LVYIPL-LLKLVAERLRDKKIKVRKQAMN 398 (1266)
T ss_pred H---HHHHHHHHhhcCChhhhheeeEEEEEeehhHhh--------------hhhhHH-HHHHHHHHHhhhhHHHHHHHHH
Confidence 2 233444444444444445444333222222211 111111 3555566677788999999998
Q ss_pred HHHHhcCC
Q psy664 325 IIEHYFGS 332 (379)
Q Consensus 325 il~~~~~~ 332 (379)
=+..+|..
T Consensus 399 ~LaqlYk~ 406 (1266)
T KOG1525|consen 399 GLAQLYKN 406 (1266)
T ss_pred HHHHHHHH
Confidence 88888873
No 287
>KOG4464|consensus
Probab=82.29 E-value=44 Score=31.32 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc----------CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcH
Q psy664 56 VRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF----------HADPDVLADACWAISYLSDGPNEKIQAVIDAGVC 125 (379)
Q Consensus 56 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----------~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i 125 (379)
+-....++..|+++++ ...-......+..|..+-. ..|..+...++.+|.|+..++...++.+++....
T Consensus 63 ~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~ 141 (532)
T KOG4464|consen 63 RVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLT 141 (532)
T ss_pred hhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhH
Confidence 3345566667777653 3222333344444444422 1234778888888888888877666666655444
Q ss_pred HHHH
Q psy664 126 RRLV 129 (379)
Q Consensus 126 ~~L~ 129 (379)
..+.
T Consensus 142 ~~ll 145 (532)
T KOG4464|consen 142 GKLL 145 (532)
T ss_pred HHHH
Confidence 4333
No 288
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.78 E-value=15 Score=31.78 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhCCCCC------CCChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHH-HHHHhcCc
Q psy664 53 LSMVRNSVWVLSNLCRGKTP------PPDFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKI-QAVIDAGV 124 (379)
Q Consensus 53 ~~~~~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~-~~~~~~g~ 124 (379)
.+-++-|..+|+.||-.+.. .+.+-....+...|++++.. +++-.++-|+-.|.+++..+.... ....+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35688999999999987642 23444566788888888874 568899999999999998876554 33445688
Q ss_pred HHHHHHhhcCCC
Q psy664 125 CRRLVELLMHDQ 136 (379)
Q Consensus 125 i~~L~~lL~~~~ 136 (379)
+..|+.+++..+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 289
>KOG2038|consensus
Probab=81.65 E-value=65 Score=32.82 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=75.6
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHH
Q psy664 123 GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQA 202 (379)
Q Consensus 123 g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 202 (379)
.+|+.|..+-..+=+.++..++.++.++..+.+++-. .++..++.-|.+++..+-..|...|.+|.+..|...-.
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 4566666666667788999999999999998887755 45677889999999999999999999987766653222
Q ss_pred HHhcCchHHHHHHHHhC--cHHHHHHHHHHHHHHhcCC
Q psy664 203 VIDANIFPSLIEILQKA--EFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 203 ~~~~~~i~~Li~ll~~~--~~~v~~~a~~~l~nl~~~~ 238 (379)
++..+.+++-.+ +......|+..|..+...+
T Consensus 379 -----vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lsh 411 (988)
T KOG2038|consen 379 -----VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSH 411 (988)
T ss_pred -----hHHHHHHHHcccCccccceeehhhhhhhhHhcc
Confidence 344555665544 3455556666666654333
No 290
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=81.19 E-value=20 Score=28.07 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCC---------hHHHHHHH----
Q psy664 54 SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGP---------NEKIQAVI---- 120 (379)
Q Consensus 54 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~---------~~~~~~~~---- 120 (379)
-++...+-+++.++..+-|.. -...++.++++++. ++.-....+..|..+...- .+.+..+.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 345667777888777642211 23467777777776 3444445555554443211 11111111
Q ss_pred h--cCcHHHHHHhhcCCC----hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHH
Q psy664 121 D--AGVCRRLVELLMHDQ----HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAV 189 (379)
Q Consensus 121 ~--~g~i~~L~~lL~~~~----~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 189 (379)
+ ..++..+.+.+.... ..+...++.+++....- .....+.+.++++.+.+++.+ +.++..|+.+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 1 133444445554432 78899999999998762 344556777899999999954 45688887664
No 291
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=81.05 E-value=14 Score=29.35 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=61.3
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChH-HHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhc
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNE-KIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~ 152 (379)
-+.++..+.+-|.+.++.++..|+..|-.++.+... ....+...+++..|..++.. .+..++..++..+..-+.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 356888888889999999999999999999877654 44456667899999999988 688999999999887764
No 292
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=80.73 E-value=44 Score=32.75 Aligned_cols=185 Identities=14% Similarity=0.064 Sum_probs=106.2
Q ss_pred HHhCCChH---HHHhcC----CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc-----------CCChHH
Q psy664 36 SLDNNILY---PLIDKP----KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF-----------HADPDV 97 (379)
Q Consensus 36 i~~~g~i~---~Ll~lL----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----------~~d~~v 97 (379)
++..|.++ .++.++ +++.++...+--.|..++.. .-...++..|..+.. .-++.+
T Consensus 227 fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~-------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~l 299 (501)
T PF13001_consen 227 FLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVS-------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRL 299 (501)
T ss_pred HHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHH
Confidence 45666663 344555 55566666677777666554 123456666666544 234667
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHHH---HHhhcCCchhh-H---HHhhcCcHH
Q psy664 98 LADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRAV---GNIVTGDDQQT-Q---VILNCSALM 168 (379)
Q Consensus 98 ~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~L---~nl~~~~~~~~-~---~~~~~~~l~ 168 (379)
+...+..|..-.. ..-.-...+..+...+.++ +.+++..++..+ ........... + ..+..++.|
T Consensus 300 q~kIL~~L~kS~~------Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p 373 (501)
T PF13001_consen 300 QEKILSLLSKSVI------AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWP 373 (501)
T ss_pred HHHHHHHHHHhHH------HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcc
Confidence 7666666643210 0001123344444445555 667777777777 55554332222 1 122233333
Q ss_pred HHHH----hhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 169 CLLH----LIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 169 ~L~~----lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
.+-. --.+.+...|..+..+|+.|+...+.... -+-+++..+++-|...+++++..+-.||+.++
T Consensus 374 ~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 374 LIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccccCCCcccHHHHHHHHHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 3310 01123578999999999999987776532 13468888998888888888877777777765
No 293
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.59 E-value=13 Score=29.48 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=60.1
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh-HHHHHHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhc
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPN-EKIQAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~ 152 (379)
-+.++..+.+-|.+.++.++..|+..|-.+..+.. .....+.+.+++..|+.++. ..++.++..++..+..-+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999988887743 35555677789999999987 4678899999988887653
No 294
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=80.15 E-value=42 Score=29.73 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=87.8
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
.+++.-|.+.|+.+|++-+ .+..+++.. .+++...+|.|+.. ..++.+...+++.|.+++.--+..
T Consensus 12 l~~LkdL~r~lr~dd~~~~-~v~r~lg~~---------~iv~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~P~~~~-- 77 (266)
T PF04821_consen 12 LECLKDLKRFLRRDDEDQR-DVRRQLGEW---------NIVQKDLIPILISY--KDDDKLFLACLRLLVNLTWPIELL-- 77 (266)
T ss_pred HHHHHHHHHHHHHhCcchH-HHHHHHHHh---------chhhhhHHHHHHhc--cCchHHHHHHHHHHHHhCCCHHHh--
Confidence 4567777778877766554 444444321 14555566665553 237889999999999998521110
Q ss_pred HHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh-----------CcHHHHHHHH
Q psy664 160 VILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK-----------AEFKTRKEAA 228 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~-----------~~~~v~~~a~ 228 (379)
.+. . ..+..-+.........+ ......+.+.+++..+++.+.. .|..+.+.++
T Consensus 78 --~~~--~--------~~~~~~~~~~~~l~~~l----~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL 141 (266)
T PF04821_consen 78 --VES--Q--------PKDKNQRRNIPELLKYL----QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVL 141 (266)
T ss_pred --ccC--C--------CCChHHHHHHHHHHHHH----HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHH
Confidence 000 0 00011111111111111 1122233333444444433311 2445667777
Q ss_pred HHHHHHhcCC---------------CHHHHHHHHHcCChHHHHHhhccC-CHHHHHHHHHHHHHHHHH
Q psy664 229 WAITNATSGG---------------TPDQIRYLIQQGCIEPFCELLTLL-DAKIIQVALNGLENILKL 280 (379)
Q Consensus 229 ~~l~nl~~~~---------------~~~~~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l~~~ 280 (379)
..+.|++.-. ....+..|.+.|+.+.|+.+..+. ..+....++..+..++..
T Consensus 142 ~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 142 TLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 7777776421 123334566778888888888774 334444667777766654
No 295
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=79.82 E-value=22 Score=31.51 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcHHhhhhc------CCcchHHHHHHHhccHHHHHHhhcCCCH-HHHHHHHHHHHHhcCCCc
Q psy664 262 LDAKIIQVALNGLENILKLGEEEAKQT------GSVNPYVVLIEECYGLDKIEFLQSHENI-EIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 262 ~d~~v~~~al~~L~~l~~~~~~~~~~~------~~~~~~~~~i~~~g~l~~l~~l~~~~~~-~v~~~a~~il~~~~~~~~ 334 (379)
.|..+++.++..+.|++...+...... ...+.+...+.+.|+++.|..+..+.+. +-......|+.-+|.+.+
T Consensus 132 ~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 132 RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 456888999999999998743211100 1134566788899999999999988733 333366677777777654
No 296
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=79.62 E-value=33 Score=35.44 Aligned_cols=132 Identities=15% Similarity=0.149 Sum_probs=82.3
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHh-cCcHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID-AGVCRRL 128 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L 128 (379)
+++..+......++.+++.-....++. ...-++.-..-.+..-..+......+|..+++.+++....++. .+....+
T Consensus 452 ~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i 529 (727)
T PF12726_consen 452 SDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDPDAAQAI 529 (727)
T ss_pred CCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHH
Confidence 556666677777777777654333222 1111111111112222466777888999999887777666665 5889999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 129 VELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 129 ~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
+.++=+++.++...|...|..++. .+. =.+.+-.++++.-........+.+..++
T Consensus 530 ~s~lfsp~~~l~qaA~~llk~~~d-~~~---------R~e~i~~ll~~~~~~tL~ai~~~l~~~~ 584 (727)
T PF12726_consen 530 WSLLFSPDDDLYQAAQDLLKQAFD-VDG---------RLEAIQALLQSNFSPTLSAINWSLRQLT 584 (727)
T ss_pred HhheeCCChHHHHHHHHHHHHHhc-CCc---------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998873 222 2233444444433444455556666554
No 297
>KOG4524|consensus
Probab=79.49 E-value=16 Score=37.82 Aligned_cols=98 Identities=19% Similarity=0.111 Sum_probs=73.6
Q ss_pred hHhHhhhHHHHHHhhcCCChHHHHHHHHHHHH----hcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhh
Q psy664 76 FAKVAPALACLSRLLFHADPDVLADACWAISY----LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151 (379)
Q Consensus 76 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~----l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~ 151 (379)
.....+++.....+|.+++..+|..++.+|+. |+..++.....+ ...-+.+++.+...++-+...|+.++.+++
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 34567888889999999999999999998874 334444444433 246889999999999999999999999999
Q ss_pred cCCchhhHHHhhcCcHHHHHHhhc
Q psy664 152 TGDDQQTQVILNCSALMCLLHLIQ 175 (379)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~L~~lL~ 175 (379)
...+.....=+-..++|.+-.++.
T Consensus 876 ~~sgDFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 876 KYSGDFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 766655543334467777776664
No 298
>KOG2073|consensus
Probab=79.04 E-value=40 Score=34.94 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=80.1
Q ss_pred hHHHHHHhhcC-CChHHHHHHHHHHHHhcCC------ChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCC
Q psy664 82 ALACLSRLLFH-ADPDVLADACWAISYLSDG------PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 82 ~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~------~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~ 154 (379)
.++.++.++.. .+++++..|...|..|++. ++.....+...+.+.+|+..+-.... -....+..+.-+.+-.
T Consensus 191 li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~-s~s~lVs~i~vlI~ll 269 (838)
T KOG2073|consen 191 LIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGT-SLSVLVSGIIVLISLL 269 (838)
T ss_pred HHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCc-chhhHHHHHHHHHHhc
Confidence 77888877763 4577777777777766644 33344445555666666655333211 1111111221111111
Q ss_pred chhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcC---chHHHHHHHHhCcHHHHHHHHHHH
Q psy664 155 DQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDAN---IFPSLIEILQKAEFKTRKEAAWAI 231 (379)
Q Consensus 155 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~---~i~~Li~ll~~~~~~v~~~a~~~l 231 (379)
...+..+.-.-....+.+-....++.+....+.++..-. .+..+.+.+.. +++.=...+...=-..|-..+..+
T Consensus 270 ~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~eli 346 (838)
T KOG2073|consen 270 NPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVELI 346 (838)
T ss_pred CcccccccccceeeeecCCccccCccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHHHH
Confidence 111110000000111111122223445555555544321 11122222111 111111111111124566677778
Q ss_pred HHHhcCCCHHHHHHHHHcCChHHHHHhhcc
Q psy664 232 TNATSGGTPDQIRYLIQQGCIEPFCELLTL 261 (379)
Q Consensus 232 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 261 (379)
+.++...+....+.+...++++.+.+++..
T Consensus 347 aelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 347 AELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred HHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 887777777777777777888777777654
No 299
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.75 E-value=51 Score=34.03 Aligned_cols=57 Identities=7% Similarity=0.077 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHh-cCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVID-ANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
..+....+.++..++..+++....++. .+....++.++-+++.++...|...|....
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~ 552 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAF 552 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHh
Confidence 467778888999998888888887775 588889999999999999999999999875
No 300
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.46 E-value=37 Score=28.10 Aligned_cols=78 Identities=23% Similarity=0.149 Sum_probs=55.8
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCC-ChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch
Q psy664 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDG-PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ 156 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~ 156 (379)
-....+|.++.-|...+..-+.-|...+..+... ..+.+-.++ ..++..+-..|++.++++...++.+|..++...+.
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3457899999999887766666666666666544 333333222 35677777888899999999999999999765543
No 301
>KOG0392|consensus
Probab=78.41 E-value=42 Score=36.12 Aligned_cols=229 Identities=11% Similarity=0.134 Sum_probs=124.7
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc--------CCC--hHHHHHHHHHHHHhc
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF--------HAD--PDVLADACWAISYLS 109 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--------~~d--~~v~~~a~~aL~~l~ 109 (379)
.+..|+..+ ++..+++.-+.-++..+...............++-.+...+. +++ .-+++.+.|+|..+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 344555555 778888888888888777654333333333333333333221 111 478999999998777
Q ss_pred CCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHh--hcCcHHHHHHhhcCCChhhHHHHHH
Q psy664 110 DGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL--NCSALMCLLHLIQSPKESIRKEACW 187 (379)
Q Consensus 110 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~ 187 (379)
.+.... .+. ..+..+.+++..+..+++.-.+-.+..... ...+.+. -..+++.+..-|.+.+..++..|+.
T Consensus 158 ~~~~~s--~~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 158 KHMDES--LIK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HhhhhH--hhH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 553221 111 246777788887777776655555543332 1111111 1235667777788888999999988
Q ss_pred HHHHhhcCChHHH-HHHHhcCchHHHHHHHHhCcHHH--HHHHHHHHHHHhcCCCHHHHHHHH-----HcCChHHHHHhh
Q psy664 188 AVSNITAGNRQQI-QAVIDANIFPSLIEILQKAEFKT--RKEAAWAITNATSGGTPDQIRYLI-----QQGCIEPFCELL 259 (379)
Q Consensus 188 ~l~nl~~~~~~~~-~~~~~~~~i~~Li~ll~~~~~~v--~~~a~~~l~nl~~~~~~~~~~~l~-----~~~~i~~L~~lL 259 (379)
.+.-++..-.+.. +.+. .++..+...+...+.-. .......+..++.. . +...+. +.|.++.+..++
T Consensus 231 ~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~--~-evl~l~~~~n~~~~Lvp~~~p~l 305 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIE--N-EVLDLFEQQNLEVGLVPRLWPFL 305 (1549)
T ss_pred HhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhh--H-HHHHHHHHhhhhhccchhhHHHH
Confidence 8877654321111 1111 23334444443333200 01111122222211 1 122221 247788888888
Q ss_pred ccCCHHHHHHHHHHHHHHHHHc
Q psy664 260 TLLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 260 ~~~d~~v~~~al~~L~~l~~~~ 281 (379)
.+.=..++..++..+..+++..
T Consensus 306 ~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 306 RHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8776778888888888888765
No 302
>KOG0413|consensus
Probab=77.50 E-value=17 Score=37.82 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHH
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCE 257 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ 257 (379)
+.++..+.-+++++|-....... ..+|.+++-|... +..+|.+.+.+++.+|..- -.+++ ..++.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d-~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTD-RYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHH-HhhHHHHH
Confidence 46778888888898865554333 5678888888765 4577888888888877321 12333 45888888
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 258 LLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 258 lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
-|.++++-|++.++..|.++++.+--.-+ - .+ ++.-+..++ +.+++|+..|.-.+..+...+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~----G----~L-----f~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKWN----G----EL-----FIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhhcc----h----hh-----HHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999986532110 0 11 123333333 456788888887777666543
No 303
>KOG1525|consensus
Probab=76.98 E-value=24 Score=38.32 Aligned_cols=148 Identities=19% Similarity=0.146 Sum_probs=90.5
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHH
Q psy664 123 GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQA 202 (379)
Q Consensus 123 g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 202 (379)
+++|.|-.=|.+++..++..|+..+|.+......+.. -.........+.-+...+..+|.+++....+....+++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 6778888888889999999999999999875443322 011233444555556677999999999999976666654432
Q ss_pred HHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 203 VIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 203 ~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
.. ....+ -....|++++.....++..+. . ....-.+... .+..+.+.+.+.-..||..|+..|..+...
T Consensus 338 ~~---~~~~l--~~~~~D~~~rir~~v~i~~~~-v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 338 ST---ILLAL--RERDLDEDVRVRTQVVIVACD-V--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HH---HHHHH--HhhcCChhhhheeeEEEEEee-h--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 21 11111 123345555544332222211 0 0111111222 455556667777889999999999988874
No 304
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.81 E-value=14 Score=26.30 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=47.9
Q ss_pred HcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhcc---HHHHHHhhcCCCHHHHHHHH
Q psy664 248 QQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYG---LDKIEFLQSHENIEIYQKAF 323 (379)
Q Consensus 248 ~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~---l~~l~~l~~~~~~~v~~~a~ 323 (379)
+..++.++..++.. .+.++++.++.++.+++...... + ..|| ++.+.....++++.+...|.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~-------------i-~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN-------------I-KSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH-------------H-HhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 44568888888654 67899999999999999865432 2 3443 33444455677889999999
Q ss_pred HHHHH
Q psy664 324 DIIEH 328 (379)
Q Consensus 324 ~il~~ 328 (379)
.+++.
T Consensus 81 ~~~~~ 85 (86)
T PF09324_consen 81 QIVQL 85 (86)
T ss_pred HHHhh
Confidence 88764
No 305
>KOG1832|consensus
Probab=76.68 E-value=16 Score=37.48 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=104.4
Q ss_pred chhHHHHHhCCChHHHHhcC-------CCChhHHHHHHHHHHHHhCCCC-------CCCChHhHhhhHHHHHHhhcC---
Q psy664 30 PSVETMSLDNNILYPLIDKP-------KNRLSMVRNSVWVLSNLCRGKT-------PPPDFAKVAPALACLSRLLFH--- 92 (379)
Q Consensus 30 ~~~r~~i~~~g~i~~Ll~lL-------~~~~~~~~~a~~~L~~l~~~~~-------~~~~~~~~~~~l~~L~~lL~~--- 92 (379)
..+|..-++.|.....++-+ ....+....++|-+-.+-+... +....+...+++..++++...
T Consensus 536 e~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~ 615 (1516)
T KOG1832|consen 536 ESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPV 615 (1516)
T ss_pred HhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCcc
Confidence 33455556677777777655 1133455667776665544321 112223344677777777652
Q ss_pred -----CChHHHHHHHHHHHHhcCCChHHHHHHHhc--------CcHHHHHHhhc----CCChHHHHHHHHHHHHhhcCCc
Q psy664 93 -----ADPDVLADACWAISYLSDGPNEKIQAVIDA--------GVCRRLVELLM----HDQHKVVSAALRAVGNIVTGDD 155 (379)
Q Consensus 93 -----~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~--------g~i~~L~~lL~----~~~~~i~~~al~~L~nl~~~~~ 155 (379)
+-.+....|+..|.-+..-++-+.+ +... .++..++..-. -.+++++.+|+.+|-|++...+
T Consensus 616 w~~~spR~d~~~~Al~vL~i~t~iP~iq~~-La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp 694 (1516)
T KOG1832|consen 616 WRYLSPRHDLLQYALGVLHIVTSIPDIQKA-LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPP 694 (1516)
T ss_pred ccccCcchHHHHHHHhheeeeEecchHHHH-HHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCC
Confidence 2246677777777777666643333 3321 12333332211 1388999999999999987553
Q ss_pred hhh-----------------------------------HHHhhcCcHHHHHHhhcCCC-----hhhHHHHHHHHHHhhcC
Q psy664 156 QQT-----------------------------------QVILNCSALMCLLHLIQSPK-----ESIRKEACWAVSNITAG 195 (379)
Q Consensus 156 ~~~-----------------------------------~~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~l~nl~~~ 195 (379)
... ..+...+++.+|+++|+... ..+|+-||.+|.-++.+
T Consensus 695 ~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 695 TTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred CcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccC
Confidence 211 12334578899999997543 67999999999999654
Q ss_pred ChHHHHHHHhcCc
Q psy664 196 NRQQIQAVIDANI 208 (379)
Q Consensus 196 ~~~~~~~~~~~~~ 208 (379)
+...|.+.+-.+
T Consensus 775 -~tVrQIltKLpL 786 (1516)
T KOG1832|consen 775 -DTVRQILTKLPL 786 (1516)
T ss_pred -cHHHHHHHhCcc
Confidence 444554444333
No 306
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=76.44 E-value=4.2 Score=30.25 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHH
Q psy664 98 LADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSA 142 (379)
Q Consensus 98 ~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~ 142 (379)
....+..+..|+..+ +....+++.|+++.|+.+|.|++..|...
T Consensus 63 Ld~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 356677888888877 67888999999999999999998776543
No 307
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.38 E-value=15 Score=28.68 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=55.7
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch-hhHHHhhcCcHHHHHHhhcCCC--hhhHHHHHHHHHHhh
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ-QTQVILNCSALMCLLHLIQSPK--ESIRKEACWAVSNIT 193 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~nl~ 193 (379)
++..|..-|.++++.++..|+..|..++..... ....+...+++..|.+++.... +.|+..++..+..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999877544 4466677789999999987654 348888888887754
No 308
>KOG2199|consensus
Probab=75.83 E-value=9 Score=35.27 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=60.6
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q psy664 251 CIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS-HENIEIYQKAFDIIEHY 329 (379)
Q Consensus 251 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~-~~~~~v~~~a~~il~~~ 329 (379)
++..+..-|.+.|+.|+..++..+..+...+++. |..-+....+...+..++. ..++.|.++-..++.++
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~---------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eW 116 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR---------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEW 116 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH---------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 4777888899999999999999999999888665 4455666667777888887 67788888888888887
Q ss_pred cCCCccc
Q psy664 330 FGSEEED 336 (379)
Q Consensus 330 ~~~~~~~ 336 (379)
.+..-+|
T Consensus 117 see~K~D 123 (462)
T KOG2199|consen 117 SEEFKKD 123 (462)
T ss_pred HHHhccC
Confidence 7644444
No 309
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=75.34 E-value=42 Score=32.54 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=54.6
Q ss_pred CHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhh---cCCcchHHHHHHHhccHHHHHHhh
Q psy664 239 TPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQ---TGSVNPYVVLIEECYGLDKIEFLQ 311 (379)
Q Consensus 239 ~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~---~~~~~~~~~~i~~~g~l~~l~~l~ 311 (379)
....+.++.+.++++.|+++|+. .+..++.+|...|+.|+..+.+.... .-+.++....+.....+++|...+
T Consensus 51 ~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~m 127 (475)
T PF04499_consen 51 PTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIM 127 (475)
T ss_pred hHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHH
Confidence 34566788889999999999974 56789999999999998876543211 123477888888888888886544
No 310
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=75.26 E-value=53 Score=28.29 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=94.6
Q ss_pred HHHHHhCCChHHHHhcC--------------CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC-----
Q psy664 33 ETMSLDNNILYPLIDKP--------------KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA----- 93 (379)
Q Consensus 33 r~~i~~~g~i~~Ll~lL--------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----- 93 (379)
.+.+...-.+..|+... ..+....+..|..+..|...+ ++.......++++.+...|..-
T Consensus 44 ~e~~~~~kF~kRLl~FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~~~-eG~~~l~~~~ll~qia~~L~~~d~~~g 122 (226)
T PF14666_consen 44 DEALKSTKFFKRLLSFYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLSSP-EGIKYLSESKLLPQIAECLAQVDPMSG 122 (226)
T ss_pred HHHHhcChHHHHHHHhcCCccccccccccccccchHHHHHHHHHHHHHHcCc-HHHHHHHHccHHHHHHHHHHHHhhhcC
Confidence 33434455566666554 113455667888888888775 5666666778888887776532
Q ss_pred ----C-----hHHHHH----HHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 94 ----D-----PDVLAD----ACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 94 ----d-----~~v~~~----a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
+ ..+... =...++.++... ...+.+-+.++...+.++...++. ..-..-++.++=.+.+.....
T Consensus 123 ~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~-~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~ 199 (226)
T PF14666_consen 123 ITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTP-NGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRI 199 (226)
T ss_pred CcccccccCHHHHHhhHHHHHHHHHHHHhCCh-hHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHH
Confidence 1 122222 234567777665 677878888999999999887643 222223556654444333332
Q ss_pred HhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 161 ILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
.|.+.|.+++..+|..|+..+..+.
T Consensus 200 --------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 200 --------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred --------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 3667888899999999999888764
No 311
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=75.19 E-value=7.3 Score=33.56 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhcC-------cHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhh-HHHhhcCc
Q psy664 96 DVLADACWAISYLSDGPNEKIQAVIDAG-------VCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQT-QVILNCSA 166 (379)
Q Consensus 96 ~v~~~a~~aL~~l~~~~~~~~~~~~~~g-------~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~-~~~~~~~~ 166 (379)
.-+..|+.+|.+|+-.. .+.+.++.++ ++..|++++.. .+...++-|+-.|.|++.++.... ....+.+.
T Consensus 139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 46889999999998553 3445555443 44555566655 477788999999999999877666 44456788
Q ss_pred HHHHHHhhcCCC
Q psy664 167 LMCLLHLIQSPK 178 (379)
Q Consensus 167 l~~L~~lL~~~~ 178 (379)
+..|+.++....
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 889998886543
No 312
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=73.15 E-value=28 Score=25.99 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=54.1
Q ss_pred CcHHHHHHhhcCCC--h--hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC--cHHHHHHHHHHHHHHhcCC
Q psy664 165 SALMCLLHLIQSPK--E--SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA--EFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 165 ~~l~~L~~lL~~~~--~--~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~--~~~v~~~a~~~l~nl~~~~ 238 (379)
|++..+...+.+.+ . .-|+.+..+++-+.......+. ...|.++.+|+++ .++++..|+.+-..++..-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56666667776554 3 4488999999887653323222 4567888888774 6789999998888887666
Q ss_pred CHHHHHHHHH
Q psy664 239 TPDQIRYLIQ 248 (379)
Q Consensus 239 ~~~~~~~l~~ 248 (379)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666665543
No 313
>KOG0891|consensus
Probab=72.32 E-value=86 Score=36.72 Aligned_cols=223 Identities=14% Similarity=0.112 Sum_probs=118.4
Q ss_pred CCChhHHHHHHHHHHHHhCCCC---CCCChH--hHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcC
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKT---PPPDFA--KVAPALACLSRLL-FHADPDVLADACWAISYLSDGPNEKIQAVIDAG 123 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~---~~~~~~--~~~~~l~~L~~lL-~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g 123 (379)
..+.+.+.++......+-.... ...+.. ..+..+..+..+- -.+++.++......+. ...-....+.+
T Consensus 492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~ 565 (2341)
T KOG0891|consen 492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQPD 565 (2341)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCch
Confidence 5567777766443333332211 111111 2344444444432 2455666655544433 12223355556
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
.+..++..+....-.++..+...+|+++..++.+.-.-+..-.+..+..+..+.-..+......-+..+..+.+..+...
T Consensus 566 ~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~ 645 (2341)
T KOG0891|consen 566 LLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPY 645 (2341)
T ss_pred hHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhh
Confidence 67777788888888899999999999998777443222222222222222222222222222222222333344444433
Q ss_pred HhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHc
Q psy664 204 IDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~ 281 (379)
++ .++..++..+..++..+.+.+..++..++..+..+ ....++ ..++.+.+.+.. ....-+..+++++.++....
T Consensus 646 v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~-~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 646 VG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEE-MVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred cC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccch-hhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 33 45566777778888888899999999988654422 212222 334444444443 34456677888888887654
No 314
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=71.76 E-value=30 Score=25.38 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=51.5
Q ss_pred hcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHH
Q psy664 205 DANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGL 274 (379)
Q Consensus 205 ~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 274 (379)
...++..|+......+...+.++...+..++ .++.....+.+-|..+.|-++-..-++..+..+-..+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~--~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLL--KSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHH--hCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3367888888888888888899999999975 3566677888889998887777666776666554444
No 315
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=70.70 E-value=9.3 Score=30.26 Aligned_cols=99 Identities=22% Similarity=0.186 Sum_probs=51.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhc-CCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 125 CRRLVELLMHDQHKVVSAALRAVGNIVT-GDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
...|+.+|+.+...-....+..|.|=+. |.++- .-++.+++..+.+-=.....--+..|+..|+.|..|.
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~A--A~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY------- 94 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEA--AYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY------- 94 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HH--HHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST-------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChH--HHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC-------
Confidence 3456666666544444455555555332 22211 1233444444443322222334678888888885443
Q ss_pred HhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 204 IDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
-+..|+++|.+.|..+...|+.+|.+.+.
T Consensus 95 ----NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 ----NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred ----cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 26788899988888999999999998653
No 316
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=69.84 E-value=48 Score=25.43 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHHhhccCC---
Q psy664 188 AVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQ-GCIEPFCELLTLLD--- 263 (379)
Q Consensus 188 ~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~d--- 263 (379)
-|.+++..++..... ++..|.+-|++.++.|+.-++.+|-+++..|++.....+.+. ..+..+...-...|
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 344444444444433 455677777888899999999999999988887777777653 44444444432122
Q ss_pred -----HHHHHHHHHHHHHHHH
Q psy664 264 -----AKIIQVALNGLENILK 279 (379)
Q Consensus 264 -----~~v~~~al~~L~~l~~ 279 (379)
..|+..|-.++..|+.
T Consensus 99 Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhc
Confidence 2677777776666553
No 317
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=68.92 E-value=2.2e+02 Score=32.75 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHHHHhCCCC---CCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHH
Q psy664 52 RLSMVRNSVWVLSNLCRGKT---PPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRR 127 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~ 127 (379)
+..+..-|+-.|..+|..-- +...+-.....+..+..++. +.+.+++...+.++.+|...... -++.| -+.
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-Wkt 1224 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-WKS 1224 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-cHH
Confidence 44555556666666655321 22333445677777777665 45689999999999988743322 23343 344
Q ss_pred HHHhhc----CCChHHHHHHHHHHHHhhcCCchhhHHHhh------cCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhc--
Q psy664 128 LVELLM----HDQHKVVSAALRAVGNIVTGDDQQTQVILN------CSALMCLLHLIQSP-KESIRKEACWAVSNITA-- 194 (379)
Q Consensus 128 L~~lL~----~~~~~i~~~al~~L~nl~~~~~~~~~~~~~------~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~-- 194 (379)
++.++. .+++.+...|..++..|.... ...+.. ..++..+..+-... +.++--.|+..+++++.
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~---f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREY---FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhh---hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 444443 567888899999888876431 111110 12344454554433 35555566666664411
Q ss_pred --CCh-----------------------HHHHH-----HHhcCchHHH---HHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 195 --GNR-----------------------QQIQA-----VIDANIFPSL---IEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 195 --~~~-----------------------~~~~~-----~~~~~~i~~L---i~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
+.. +.... ......+|.| .++..+.+++||..|+.+|-.++..+
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~y 1378 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNH 1378 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 100 00000 0011233443 34455678999999999998887543
No 318
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=68.86 E-value=60 Score=31.51 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=70.0
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHh-hcCChHHHHHHHhcCchHHHHHHHHh-CcHHHHHHHHHHHHHHhcCC----
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNI-TAGNRQQIQAVIDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGG---- 238 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl-~~~~~~~~~~~~~~~~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~---- 238 (379)
++++.+++.+.. +.+..-...+++-= .......++.+.+.++++.|+++|.. .+..++..|+..|+.++...
T Consensus 21 ~~v~~llkHI~~--~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~ 98 (475)
T PF04499_consen 21 NFVDNLLKHIDT--PAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAP 98 (475)
T ss_pred cHHHHHHHhcCC--cHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 555666665543 34444444444410 01233445566678999999999973 47789999999888876421
Q ss_pred --------CHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHc
Q psy664 239 --------TPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 239 --------~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~ 281 (379)
...-...+.....+..|++.+-. ........++..+..++...
T Consensus 99 ~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 99 QNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred cccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 13445566666777777776542 22445555566666666544
No 319
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=68.80 E-value=1e+02 Score=28.83 Aligned_cols=228 Identities=12% Similarity=0.037 Sum_probs=115.4
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRL 128 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 128 (379)
+.+..+.....|+|+.--... ..........++..+..+-+ -+...+..+.+.++.++....++....-. ...++.+
T Consensus 103 ~~~K~i~~~~l~~ls~Q~f~~-~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l 180 (372)
T PF12231_consen 103 NSPKSICTHYLWCLSDQKFSP-KIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPIL 180 (372)
T ss_pred CCCHHHHHHHHHHHHcCCCCC-cccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 446677788888887633322 11111112223333333332 35678888999999988865543322111 1368888
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCchh---hH---HHhhc----C-----cHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 129 VELLMHDQHKVVSAALRAVGNIVTGDDQQ---TQ---VILNC----S-----ALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 129 ~~lL~~~~~~i~~~al~~L~nl~~~~~~~---~~---~~~~~----~-----~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
+..+-+....++..|..++-.+...-+.. .. ...+. + +.+.+.+++.+++......-+|..--..
T Consensus 181 ~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~L 260 (372)
T PF12231_consen 181 FPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILL 260 (372)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHH
Confidence 88887877777777666655544221111 11 11111 2 2333556666644444444455544433
Q ss_pred cCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc--CCCHHHHHHHHHcCChHHHHHhhcc-CCH----HH
Q psy664 194 AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS--GGTPDQIRYLIQQGCIEPFCELLTL-LDA----KI 266 (379)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~l~~~~~i~~L~~lL~~-~d~----~v 266 (379)
-+.+..-.--.-+..+...-..+.++|+.+|.+|..+=..++. ..+.......... ...++...+.. ... ++
T Consensus 261 L~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~ 339 (372)
T PF12231_consen 261 LGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEV 339 (372)
T ss_pred hCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHH
Confidence 3333211101111344444456677899999888766555442 2222221222211 23344444443 222 67
Q ss_pred HHHHHHHHHHHHHH
Q psy664 267 IQVALNGLENILKL 280 (379)
Q Consensus 267 ~~~al~~L~~l~~~ 280 (379)
...++..+++++-+
T Consensus 340 ~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 340 WWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHhchHHH
Confidence 77888888888754
No 320
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=68.79 E-value=15 Score=28.83 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=55.1
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCC-chhhHHHhhcCcHHHHHHhhcCCC--hh--hHHHHHHHHHHhh
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGD-DQQTQVILNCSALMCLLHLIQSPK--ES--IRKEACWAVSNIT 193 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~--~~--v~~~a~~~l~nl~ 193 (379)
++..|..-|.+.++.++..|+..|--++... +.....+....++..|.+++.+.. +. |+..+...+..-+
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 5677888899999999999999999998765 345566667789999999886543 22 8888887777654
No 321
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=67.14 E-value=98 Score=27.99 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=85.1
Q ss_pred HHHhcCcHHHHHHhhcC-----------------------CChHHHHHHHHHHHHhhcCCchhh----------------
Q psy664 118 AVIDAGVCRRLVELLMH-----------------------DQHKVVSAALRAVGNIVTGDDQQT---------------- 158 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~-----------------------~~~~i~~~al~~L~nl~~~~~~~~---------------- 158 (379)
.+.+.|++|.|-++++. ++..++..-++.+.+++..+....
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 45666777777776651 122467777888888886332111
Q ss_pred -----HHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChH-HHH-HHHhcCchHHHHHHHHhC---cHHHHHH
Q psy664 159 -----QVILNCSALMCLLHLIQSP--KESIRKEACWAVSNITAGNRQ-QIQ-AVIDANIFPSLIEILQKA---EFKTRKE 226 (379)
Q Consensus 159 -----~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~-~~~-~~~~~~~i~~Li~ll~~~---~~~v~~~ 226 (379)
..--+.|++..++..+... +...|---+.++-.+..+.+. .-+ .+.+.|+++.+++.+-++ +..+...
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 0112347788888887654 356677777788887777666 344 566889999999877655 3468888
Q ss_pred HHHHHHHHhcCCCHHHHHHH
Q psy664 227 AAWAITNATSGGTPDQIRYL 246 (379)
Q Consensus 227 a~~~l~nl~~~~~~~~~~~l 246 (379)
+.-.|+.++ .++......+
T Consensus 164 ~FDLLGELi-K~n~~~f~~l 182 (303)
T PF12463_consen 164 NFDLLGELI-KFNRDAFQRL 182 (303)
T ss_pred HHHHHHHHH-CCCHHHHHHH
Confidence 999999998 6666555544
No 322
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=66.91 E-value=1e+02 Score=28.24 Aligned_cols=197 Identities=17% Similarity=0.102 Sum_probs=99.3
Q ss_pred hHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC--C
Q psy664 78 KVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG--D 154 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~--~ 154 (379)
....++..+..++.. .++......+.+|..-...- ..-+...++..+..-+.+..+.+|+.-+..++.+... +
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 445667777777664 56777777777776333111 0011223556666778888888999999999988751 1
Q ss_pred chhhHHHhhcCcHHHHHHhh----cCCChhhH----HHHHHHHHHhhcCChHHHHH-------HHhcCchHHHH---HHH
Q psy664 155 DQQTQVILNCSALMCLLHLI----QSPKESIR----KEACWAVSNITAGNRQQIQA-------VIDANIFPSLI---EIL 216 (379)
Q Consensus 155 ~~~~~~~~~~~~l~~L~~lL----~~~~~~v~----~~a~~~l~nl~~~~~~~~~~-------~~~~~~i~~Li---~ll 216 (379)
..... .-..++|.|.+.+ .++-+... ..|.-.+. +.....+.+.. +.- +-=|.++ ++.
T Consensus 95 ~~~~~--~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~-~~kps~ll~~kvy 170 (339)
T PF12074_consen 95 SDSLK--FAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLAL-DPKPSFLLSEKVY 170 (339)
T ss_pred chHHH--HHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhcc-CCCcchhcCHHHH
Confidence 11111 1124666677666 33322211 11111112 21111111111 000 0000000 222
Q ss_pred Hh-CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC--CHHHHHHHHHHHHHHHHHcHH
Q psy664 217 QK-AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL--DAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 217 ~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~~ 283 (379)
.. .+++-..-.+.++..+............ ....-..++.++.+. ..++|+.++..+..++...+.
T Consensus 171 skl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 171 SKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred hccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 23 3444444555566555533222111111 122355677777776 789999999999998886654
No 323
>KOG1822|consensus
Probab=66.64 E-value=2.4e+02 Score=32.33 Aligned_cols=218 Identities=13% Similarity=0.105 Sum_probs=110.4
Q ss_pred HHHHHHhCCCCC--CCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC-Ch
Q psy664 61 WVLSNLCRGKTP--PPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD-QH 137 (379)
Q Consensus 61 ~~L~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~ 137 (379)
.++.+++..+.. --+..+..-.+..++.-+...++..+-.+..+++.++..-+.. ..-++..+.++.-+.+. ++
T Consensus 854 s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~ 930 (2067)
T KOG1822|consen 854 SALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDP 930 (2067)
T ss_pred HHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCc
Confidence 355666666532 1223334445556666677788888888888888887543211 11234566666667665 44
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHH
Q psy664 138 KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEIL 216 (379)
Q Consensus 138 ~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll 216 (379)
..|.--.-++|.+-.+.......-.....+..+..+.+++. +.|+.-++.++.-++..........++ ..+..+..++
T Consensus 931 i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lL 1009 (2067)
T KOG1822|consen 931 ITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLL 1009 (2067)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHc
Confidence 33444444455444332222211112244667777776665 699999999998876544333332222 2233333333
Q ss_pred HhC---cHHHHHHHHHHHH------HHhc------CCCH--HHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHH
Q psy664 217 QKA---EFKTRKEAAWAIT------NATS------GGTP--DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILK 279 (379)
Q Consensus 217 ~~~---~~~v~~~a~~~l~------nl~~------~~~~--~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 279 (379)
-+. +.++...--.++. ++.. +++. +....+... .+-...-++.++|+.++..+..++.++--
T Consensus 1010 ls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts-~la~~allls~~d~lnqa~ai~clqqlhl 1088 (2067)
T KOG1822|consen 1010 LSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTS-CLAACALLLSHSDPLNQAAAIKCLQQLHL 1088 (2067)
T ss_pred CCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHH-HHHHHHHhcCCCccchHHHHHHHHHHHHh
Confidence 221 2222222111111 1111 1111 111111111 12223334566788888889999988877
Q ss_pred HcHH
Q psy664 280 LGEE 283 (379)
Q Consensus 280 ~~~~ 283 (379)
+.+.
T Consensus 1089 Fapr 1092 (2067)
T KOG1822|consen 1089 FAPR 1092 (2067)
T ss_pred hcch
Confidence 6654
No 324
>KOG2149|consensus
Probab=66.58 E-value=1.1e+02 Score=28.53 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=77.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHh
Q psy664 83 LACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162 (379)
Q Consensus 83 l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~ 162 (379)
+.-+..-+++.+..++.+|+..+..+-...+..... -..-+++.+..+.-+.+..++......+-++............
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 444556667889999999999997665443333221 1234577777777777888888888888876544322222222
Q ss_pred hcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy664 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGN 196 (379)
Q Consensus 163 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 196 (379)
..-+.+++...|.+..+.++..++..++-+....
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 3345678888889999999999999999876543
No 325
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=66.52 E-value=1.1e+02 Score=28.53 Aligned_cols=251 Identities=12% Similarity=0.142 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhCCCCCCCChHh--HhhhHHHHHHhhcCC----------C----hHHHHHHHHHHHHhcCCChHHHHHH
Q psy664 56 VRNSVWVLSNLCRGKTPPPDFAK--VAPALACLSRLLFHA----------D----PDVLADACWAISYLSDGPNEKIQAV 119 (379)
Q Consensus 56 ~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~----------d----~~v~~~a~~aL~~l~~~~~~~~~~~ 119 (379)
+..++.++..++..+=| .+.. ....+..+..+|.-+ . +.++..+|..+...+...++..+.+
T Consensus 57 l~lilKiF~sL~~~DLP--e~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~ 134 (370)
T PF08506_consen 57 LKLILKIFYSLNCQDLP--EFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPF 134 (370)
T ss_dssp HHHHHHHHHHHHSSS----HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHccCcCc--HHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777766522 2221 123344444444311 1 2345555555554443333333323
Q ss_pred HhcCcHHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCchhh---------HHHhhcCcHHH----------------
Q psy664 120 IDAGVCRRLVELLMH-----DQHKVVSAALRAVGNIVTGDDQQT---------QVILNCSALMC---------------- 169 (379)
Q Consensus 120 ~~~g~i~~L~~lL~~-----~~~~i~~~al~~L~nl~~~~~~~~---------~~~~~~~~l~~---------------- 169 (379)
+ ..++..+.++|.. ..+.+...|+..|..++... ... +.+++.=++|.
T Consensus 135 l-~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~-~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~ 212 (370)
T PF08506_consen 135 L-PTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESP-HHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPE 212 (370)
T ss_dssp H-HHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH-HHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHH
T ss_pred H-HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcch-hHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHH
Confidence 2 2456666666643 24566777888888776432 221 11222211222
Q ss_pred --HHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHH-H--hCcHHHHHHHHHHHHHHhcCCCHH--
Q psy664 170 --LLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEIL-Q--KAEFKTRKEAAWAITNATSGGTPD-- 241 (379)
Q Consensus 170 --L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll-~--~~~~~v~~~a~~~l~nl~~~~~~~-- 241 (379)
+-+-+...+ ..-|.+|+..+..++....+....++. +.+..++.-. . ..+.+-+..|+..++.+...+...
T Consensus 213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC
Confidence 222232223 667888999999887654444333322 2222222211 1 246677888888888887655321
Q ss_pred ---------HHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc
Q psy664 242 ---------QIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS 312 (379)
Q Consensus 242 ---------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~ 312 (379)
.+..+....+++-|. -=.+..+-++..|++.+...-..-+. +.+ .+.+..+.+.+.
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~------------~~l--~~~~~~l~~~L~ 356 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK------------EQL--LQIFPLLVNHLQ 356 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H------------HHH--HHHHHHHHHHTT
T ss_pred CcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH------------HHH--HHHHHHHHHHhC
Confidence 234455555666665 11234456666677766655443221 112 234788899999
Q ss_pred CCCHHHHHHHHHHH
Q psy664 313 HENIEIYQKAFDII 326 (379)
Q Consensus 313 ~~~~~v~~~a~~il 326 (379)
+++.-|+..|...|
T Consensus 357 ~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCcchhhhhhhhC
Confidence 99999998877543
No 326
>KOG2085|consensus
Probab=66.50 E-value=1.2e+02 Score=28.62 Aligned_cols=239 Identities=14% Similarity=0.140 Sum_probs=106.9
Q ss_pred CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCCh-HHHHHHHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADP-DVLADACWAIS 106 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~aL~ 106 (379)
.+......++...+-.|+.+. +.|+.-+...--+|.++...- ......+..++-..+.+++..... .=....+.+|+
T Consensus 166 d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKf-l~~r~firk~iNNif~~FIyEte~hnGIaELLEIlg 244 (457)
T KOG2085|consen 166 DPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKF-LVHRPFIRKSINNIFLRFIYETERHNGIAELLEILG 244 (457)
T ss_pred CHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHH
Confidence 445556667777777788888 777776666666666665432 222333344455555666554331 22234455555
Q ss_pred HhcCCChHHHHHHHhcCcHHHHHHhhcCCCh-HHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh--cCCChhhHH
Q psy664 107 YLSDGPNEKIQAVIDAGVCRRLVELLMHDQH-KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI--QSPKESIRK 183 (379)
Q Consensus 107 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~ 183 (379)
.+..+-.-..+.-.+.=.+..|+.+=+...- -.......|+.++...++..++.++ ..+.+.- .++..+|.
T Consensus 245 SiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VI-----rglLK~WP~tnS~KEVm- 318 (457)
T KOG2085|consen 245 SIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVI-----RGLLKYWPKTNSSKEVM- 318 (457)
T ss_pred HhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHH-----HHHHHhcCCCCCcceee-
Confidence 5553311000000000112333333221110 0111122233333333333333221 1122211 11111111
Q ss_pred HHHHHHHHhh-cCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc---CChHHHHHhh
Q psy664 184 EACWAVSNIT-AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQ---GCIEPFCELL 259 (379)
Q Consensus 184 ~a~~~l~nl~-~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~---~~i~~L~~lL 259 (379)
-+.-|.-+. +..+...+.++. .+...+...+++.+..|.+.|+....| +++..++.. -+++.+...|
T Consensus 319 -FL~ElEEILe~iep~eFqk~~~-PLf~qia~c~sS~HFQVAEraL~~wnN-------e~i~~Li~~n~~~ilPiiFpaL 389 (457)
T KOG2085|consen 319 -FLNELEEILEVIEPSEFQKIMV-PLFRQIARCVSSPHFQVAERALYLWNN-------EYIRSLISQNAEVILPIVFPAL 389 (457)
T ss_pred -eHhhHHHHHHhcCHHHHHHHhH-HHHHHHHHHcCChhHHHHHHHHHHHhh-------HHHHHHHHhccceeeehhhHHH
Confidence 111111111 123344443332 466667777788889999888876554 344444432 3445555444
Q ss_pred cc-----CCHHHHHHHHHHHHHHHHHcHH
Q psy664 260 TL-----LDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 260 ~~-----~d~~v~~~al~~L~~l~~~~~~ 283 (379)
-. =+..+...++..+..+++....
T Consensus 390 yr~sk~hWN~~i~~l~~nvlk~f~emd~~ 418 (457)
T KOG2085|consen 390 YRNSKSHWNQAIHNLILNVLKTFMEMDPK 418 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 22 1345666666777777766543
No 327
>KOG2149|consensus
Probab=66.46 E-value=1.1e+02 Score=28.57 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=80.6
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChHHHHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAG-NRQQIQA 202 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~~~~ 202 (379)
-+.-|+..+.|.+.+++..|+.-|..+....+.... .-...+++.+..+..+.+..+|.....++-++... .++. ..
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hc
Confidence 367788889999999999999999888765333222 12234677777788888899999999988885442 2222 22
Q ss_pred HHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHH
Q psy664 203 VIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQI 243 (379)
Q Consensus 203 ~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~ 243 (379)
..-.=+++.+...|.+..+.++..++..+.-++..-.+...
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 22223456666667777889999888888887744434433
No 328
>KOG1848|consensus
Probab=65.20 E-value=2.2e+02 Score=31.40 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCC
Q psy664 51 NRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDG 111 (379)
Q Consensus 51 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~ 111 (379)
....+.+.+.-+|.-+|.+-=+..+.....+++..+..+-. ..|..+--.|+..++.+++.
T Consensus 898 kek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 898 KEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred hhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 35677888888888888887666777778889999888865 45778888888888877743
No 329
>KOG1087|consensus
Probab=64.98 E-value=31 Score=33.16 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=57.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh-cC-CCHHHHHHHHHHHHHh
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ-SH-ENIEIYQKAFDIIEHY 329 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~-~~-~~~~v~~~a~~il~~~ 329 (379)
+..|..-+.+..+.++..||..|..+++.++.. |...+.+.++++.+..+- ++ .+..|+++++.+|+.+
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~---------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYS---------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 455666677778899999999999999888655 566777888887765544 45 6788999999999988
Q ss_pred cCCCcc
Q psy664 330 FGSEEE 335 (379)
Q Consensus 330 ~~~~~~ 335 (379)
......
T Consensus 111 ~~af~~ 116 (470)
T KOG1087|consen 111 QQAFCG 116 (470)
T ss_pred HHHccC
Confidence 765543
No 330
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=64.36 E-value=1.4e+02 Score=28.95 Aligned_cols=235 Identities=16% Similarity=0.215 Sum_probs=121.8
Q ss_pred HhhhHHHHHHhhc-CCChHHHHHHHHHHHHhc--CCCh--------HHHHHHHhcCcHHHHHHhhcC----C----ChHH
Q psy664 79 VAPALACLSRLLF-HADPDVLADACWAISYLS--DGPN--------EKIQAVIDAGVCRRLVELLMH----D----QHKV 139 (379)
Q Consensus 79 ~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~--~~~~--------~~~~~~~~~g~i~~L~~lL~~----~----~~~i 139 (379)
...++..+.+++. +..-.++.+++|.|+.+- .-+. .....+-+..++...+.++-. . .+..
T Consensus 95 lnevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~l 174 (589)
T PF11229_consen 95 LNEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSL 174 (589)
T ss_pred HHHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHH
Confidence 3467888888877 456899999999998552 2111 111222233455555555432 1 2333
Q ss_pred HHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC
Q psy664 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA 219 (379)
Q Consensus 140 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~ 219 (379)
...++.-++..... .+..-+-=.-++..|+++ +-..+++..+......=+.. ......++..=+.|.++.-++.
T Consensus 175 vkvvl~~ia~vgeS--~qyPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sLs~- 248 (589)
T PF11229_consen 175 VKVVLKPIATVGES--YQYPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSLSV- 248 (589)
T ss_pred HHHHHHHhhhcCCC--CCCCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhhhH-
Confidence 44444444332211 000000001123344444 23467777666444332222 2335566666677777766654
Q ss_pred cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHH
Q psy664 220 EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIE 299 (379)
Q Consensus 220 ~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~ 299 (379)
..++.-+.-+.-....-.+++++.+++.=.+..+-..-.-.+++++..++.+|..-++.....+. ....+
T Consensus 249 --~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h-------~Ws~L- 318 (589)
T PF11229_consen 249 --NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQH-------CWSLL- 318 (589)
T ss_pred --HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhH-------HHHHH-
Confidence 56666666666665556778888777653344443333346788999999998886654332110 01112
Q ss_pred HhccHHHHHHhh----cCCCHHHHHHHHHHHHHhc
Q psy664 300 ECYGLDKIEFLQ----SHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 300 ~~g~l~~l~~l~----~~~~~~v~~~a~~il~~~~ 330 (379)
|...++|..++ ...+-+.|....+.|....
T Consensus 319 -c~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMt 352 (589)
T PF11229_consen 319 -CETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMT 352 (589)
T ss_pred -HHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcC
Confidence 34456666666 2223345554455554443
No 331
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=64.25 E-value=20 Score=22.69 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHHHHHhccHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q psy664 295 VVLIEECYGLDKIEFLQSH-ENIEIYQKAFDIIEHY 329 (379)
Q Consensus 295 ~~~i~~~g~l~~l~~l~~~-~~~~v~~~a~~il~~~ 329 (379)
.+.+.+.|+-..+..+..| ++++++..|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4678888888888999999 9999999999999875
No 332
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=64.10 E-value=26 Score=27.35 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=38.6
Q ss_pred chHHHHHHHHhCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHH
Q psy664 208 IFPSLIEILQKAE----FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGL 274 (379)
Q Consensus 208 ~i~~Li~ll~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 274 (379)
++..+.+++.... .++.+.+..++...+...+.+ .+.+.+.++.++.+|..++ ++..|+++|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~---~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE---LIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH---HHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH---HhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 3444455554432 677888888888887544433 4556678888888885543 466666553
No 333
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=63.79 E-value=1.5e+02 Score=28.88 Aligned_cols=256 Identities=14% Similarity=0.139 Sum_probs=133.3
Q ss_pred ChHHHHhhcCCCCCCccc------CchhHHHHHhCCChHHHHhcC--CCChhHHHHHHHHHHHHhCCC--C-C-----C-
Q psy664 11 AVPVFIQLLLSPHEDQVT------HPSVETMSLDNNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGK--T-P-----P- 73 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~------~~~~r~~i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~--~-~-----~- 73 (379)
++..|+.|+.|+..-++- +.+.+..+-+ +|..+-+++ +...-++.|++|.|..|--.. . . +
T Consensus 64 a~~GlvaLvgse~~~iQlkse~~~ss~~q~~lne--vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~ 141 (589)
T PF11229_consen 64 ALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNE--VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPT 141 (589)
T ss_pred HhhchhheeccccceeeehhhcccCHHHHHHHHH--HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCC
Confidence 566677888887665553 4555444422 566677777 677888999999998773221 0 0 0
Q ss_pred -CChHhHhhhHHHHHHhh----cCCC----hHHHHHHHHHHHHhcCC---ChHHHHHHHhcCcHHHHHHhhcCCChHHHH
Q psy664 74 -PDFAKVAPALACLSRLL----FHAD----PDVLADACWAISYLSDG---PNEKIQAVIDAGVCRRLVELLMHDQHKVVS 141 (379)
Q Consensus 74 -~~~~~~~~~l~~L~~lL----~~~d----~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~ 141 (379)
....-.+.++...+.++ +... +....-++..+...... ++-+-. -++..|+++ +-.++++.
T Consensus 142 d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~ 214 (589)
T PF11229_consen 142 DFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQ 214 (589)
T ss_pred ccccCcchhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHH
Confidence 11122344555555554 2222 33333333333322211 221111 134555554 23567888
Q ss_pred HHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCc
Q psy664 142 AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQIQAVIDANIFPSLIEILQKAE 220 (379)
Q Consensus 142 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~ 220 (379)
.++.+...=+..+ .....++..-+.|.++.-+ +...++.-+..+.-... -.+++++.+.+.-.+...-....-.+
T Consensus 215 lCLeiAvtQaqSS-qsAa~fLg~WlsPpli~sL---s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~ 290 (589)
T PF11229_consen 215 LCLEIAVTQAQSS-QSAAMFLGSWLSPPLIHSL---SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSN 290 (589)
T ss_pred HHHHHHHHhcccc-ccHHHHHHhhcCcchhhhh---hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 7776554333222 2334444445555544444 34566666666666544 35566676665322222211112346
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc----CCHHHHHHHHHHHHHHHH
Q psy664 221 FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL----LDAKIIQVALNGLENILK 279 (379)
Q Consensus 221 ~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----~d~~v~~~al~~L~~l~~ 279 (379)
+++...++.-+.......++.+.-+=.=+...+.+.++|.+ ++.++-...+.+|..+..
T Consensus 291 ~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 291 PELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 78888888888887655554443332224457777777743 233444445555555544
No 334
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=63.07 E-value=40 Score=22.91 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHH
Q psy664 58 NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRR 127 (379)
Q Consensus 58 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~ 127 (379)
...|+++.|-... .........+...+...+..-++....++.|.+..+-.-+.+..+.+.+...+..
T Consensus 3 ~il~~fa~LNy~P--~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~~ 70 (71)
T PF06743_consen 3 SILLPFARLNYQP--PNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQK 70 (71)
T ss_pred HHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHhh
Confidence 4567777776553 3323344556666777767777999999999999999888888887777665543
No 335
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=63.03 E-value=1.6e+02 Score=30.10 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcC
Q psy664 136 QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP-KESIRKEACWAVSNITAG 195 (379)
Q Consensus 136 ~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~ 195 (379)
++..+..++..|+.++...+.....+.+..+++-|++.|... +..+...|+.+|.-+.=.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 456789999999999998888888899999999999998655 467777777777766533
No 336
>KOG0891|consensus
Probab=62.79 E-value=76 Score=37.14 Aligned_cols=194 Identities=16% Similarity=0.146 Sum_probs=103.6
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
..+..+...+++..-.++..+...+++++..++...-..+....+..+-.+..+.-..+...+..-+..+..+.......
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~ 644 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISP 644 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHh
Confidence 44455555566667788888888888888876643332222222222222222222222222222222222222222211
Q ss_pred HhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh-CcHHHHHHHHHHHHHHhcCCC
Q psy664 161 ILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~~ 239 (379)
.....+..+...+.+.+..+.+.+..+++.|+...........+ ..++.+.+.+.. +...-+..+.+++.++.+...
T Consensus 645 -~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 645 -YVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG 722 (2341)
T ss_pred -hcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence 12345567777788888899999999999998755544444444 566666666554 345667789999999886443
Q ss_pred HHHHHHHHHcCChHHHHHhhccC-CHHHHHHHHHHHHH
Q psy664 240 PDQIRYLIQQGCIEPFCELLTLL-DAKIIQVALNGLEN 276 (379)
Q Consensus 240 ~~~~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~L~~ 276 (379)
--...+...--++..+.+.+... ...++..++..+++
T Consensus 723 ~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~ 760 (2341)
T KOG0891|consen 723 YVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL 760 (2341)
T ss_pred eEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence 21111111112344444444442 23455555555553
No 337
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=62.44 E-value=62 Score=24.06 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=53.9
Q ss_pred CcHHHHHHhhcC----CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC--cHHHHHHHHHHHHHHhcCC
Q psy664 165 SALMCLLHLIQS----PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA--EFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 165 ~~l~~L~~lL~~----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~--~~~v~~~a~~~l~nl~~~~ 238 (379)
|++..+...+.+ .+..-|+.+..+++.+..-..+.+. .+.|.++..|++. .++++..|+.+-..++..-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 555666666655 3467789999999998753333333 4567788888764 5688888888888777666
Q ss_pred CHHHHHHHHH
Q psy664 239 TPDQIRYLIQ 248 (379)
Q Consensus 239 ~~~~~~~l~~ 248 (379)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666555543
No 338
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=62.26 E-value=1.3e+02 Score=27.55 Aligned_cols=179 Identities=12% Similarity=0.186 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHH-hh---cCCC-----hhhHHHHHHHHHHhhcCChHHHHHHHhcCch
Q psy664 139 VVSAALRAVGNIVTGDDQQTQVILNCSALMCLLH-LI---QSPK-----ESIRKEACWAVSNITAGNRQQIQAVIDANIF 209 (379)
Q Consensus 139 i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL---~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i 209 (379)
+++..++.+.......+.... +...++|.+.. +| ++.. +++..-..-++..+-....+.+..+++ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 556666666666644332221 23345666555 33 2222 344333333334433323333444443 455
Q ss_pred HHHHHHHHhC---cHHHHHHHHHHHHHHhcCC-------CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHH
Q psy664 210 PSLIEILQKA---EFKTRKEAAWAITNATSGG-------TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILK 279 (379)
Q Consensus 210 ~~Li~ll~~~---~~~v~~~a~~~l~nl~~~~-------~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 279 (379)
...+.++..+ -|+.|..-...|.+++... ++++... +++.++.-+++.++++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 6666666543 4788877777777765321 2233333 35667777888999999999999999998
Q ss_pred HcHHhhhhcCCcchHHHHHHHhccHHHHHH----hhcCCCHHHHHHHHHHHHHhcC
Q psy664 280 LGEEEAKQTGSVNPYVVLIEECYGLDKIEF----LQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~----l~~~~~~~v~~~a~~il~~~~~ 331 (379)
..... ...+...+-+.-.++.+.. +.+..+...-+.-..+|.++|.
T Consensus 195 ~~~~~------~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 195 NVSKT------NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHH-------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 87762 2234444444443444433 4455555555566677777774
No 339
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=62.25 E-value=1.5e+02 Score=28.45 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=56.3
Q ss_pred hHHHHhcC-----CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHh----cCC
Q psy664 42 LYPLIDKP-----KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA-DPDVLADACWAISYL----SDG 111 (379)
Q Consensus 42 i~~Ll~lL-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~aL~~l----~~~ 111 (379)
+..|..++ ..+.-+.+..++++..+...-.+ ........+...+....+++ |+..-+....+++.+ +..
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p-~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP-IAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 34455555 22445666677776655433211 11112223333333333443 465555555555444 333
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC
Q psy664 112 PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG 153 (379)
Q Consensus 112 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~ 153 (379)
+++... -++...+|.+...|+.+-.+..-.++.+++.+...
T Consensus 107 ~~~~v~-~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 107 DPEAVS-QFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp GHH----HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred ChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 322222 34556789999999988777888888888887643
No 340
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=62.10 E-value=1.9e+02 Score=29.56 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=62.9
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy664 167 LMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPDQIRY 245 (379)
Q Consensus 167 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~ 245 (379)
+..|-..+. ++..|..++..|+.+....+..+-.+.++.+++.|+++|... +.-+...|+.+|.-++-.-......+
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 334444444 357899999999999999999999999999999999998765 66677788888888773222222222
Q ss_pred HHHcCChHHHHHhhcc
Q psy664 246 LIQQGCIEPFCELLTL 261 (379)
Q Consensus 246 l~~~~~i~~L~~lL~~ 261 (379)
|- .++..+..++.+
T Consensus 150 L~--~Lf~If~Rl~~W 163 (668)
T PF04388_consen 150 LP--DLFNIFGRLLSW 163 (668)
T ss_pred HH--HHHHHHHHHHHc
Confidence 22 235555555543
No 341
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=61.27 E-value=3.1e+02 Score=31.69 Aligned_cols=239 Identities=10% Similarity=0.103 Sum_probs=121.3
Q ss_pred CCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHH
Q psy664 39 NNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKI 116 (379)
Q Consensus 39 ~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~ 116 (379)
...+.++..++ +.+.+++..++.++.++........+. --+.++..+.......++.+...|..++..+..+. .
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~---f 1256 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY---F 1256 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh---h
Confidence 34566666666 556778888888888776543211111 11223333333334566888888888887776431 1
Q ss_pred HHHHh------cCcHHHHHHhhcCC-ChHHHHHHHHHHHHhhc----CCc-----------------------hhhH---
Q psy664 117 QAVID------AGVCRRLVELLMHD-QHKVVSAALRAVGNIVT----GDD-----------------------QQTQ--- 159 (379)
Q Consensus 117 ~~~~~------~g~i~~L~~lL~~~-~~~i~~~al~~L~nl~~----~~~-----------------------~~~~--- 159 (379)
..+.. ...+..+..+.... +.++-..|+..|++++. +.- ....
T Consensus 1257 ~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 1336 (1780)
T PLN03076 1257 PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFT 1336 (1780)
T ss_pred hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccc
Confidence 11111 13345555554443 45666677777776521 000 0000
Q ss_pred --HHhhcCcHHHHH---HhhcCCChhhHHHHHHHHHHhhcC-----ChHHHHHHHhcCchHHHHHHHHhC----------
Q psy664 160 --VILNCSALMCLL---HLIQSPKESIRKEACWAVSNITAG-----NRQQIQAVIDANIFPSLIEILQKA---------- 219 (379)
Q Consensus 160 --~~~~~~~l~~L~---~lL~~~~~~v~~~a~~~l~nl~~~-----~~~~~~~~~~~~~i~~Li~ll~~~---------- 219 (379)
.......+|.|. ++....+.+||..|+.++-.+... +++.-..+.+ +++-++++.++..
T Consensus 1337 ~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~ 1415 (1780)
T PLN03076 1337 DKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPE 1415 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccc
Confidence 000112344444 445667799999999999886542 1122222233 4555665555421
Q ss_pred -----------c-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHH
Q psy664 220 -----------E-----FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 220 -----------~-----~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 283 (379)
+ .++...|+..+.++. ...-+.+..+. .+++..|......++..+-.....+|.+++.....
T Consensus 1416 ~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L-~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1416 GQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLL-KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 0 122333334444443 11112222211 13444445555556777778888888888776554
Q ss_pred h
Q psy664 284 E 284 (379)
Q Consensus 284 ~ 284 (379)
.
T Consensus 1494 ~ 1494 (1780)
T PLN03076 1494 L 1494 (1780)
T ss_pred c
Confidence 3
No 342
>KOG2073|consensus
Probab=60.85 E-value=1.6e+02 Score=30.86 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=81.2
Q ss_pred CcHHHHHHhhcCC---ChHHHHHHHHHHHHhhcCCchhhHHHh--hcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-CC
Q psy664 123 GVCRRLVELLMHD---QHKVVSAALRAVGNIVTGDDQQTQVIL--NCSALMCLLHLIQSPKESIRKEACWAVSNITA-GN 196 (379)
Q Consensus 123 g~i~~L~~lL~~~---~~~i~~~al~~L~nl~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~ 196 (379)
+.+..|-.+|.++ ++.+...-.++.+++......+.-..+ +..++..++.... .+.+..--+..++.--- ..
T Consensus 101 ~ll~~l~s~l~~~~pln~~l~s~F~k~~~~Ll~~k~~~~~~f~k~~~~~v~~~l~hi~--~stlMD~Llkli~~de~~~p 178 (838)
T KOG2073|consen 101 SLLSLLYSILEHEPPLNPLLSSFFSKINSRLLDRKTEQILEFIKKKDNFVDLFLKHID--ISTLMDFLLKLISTDEPESP 178 (838)
T ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHHcC--ccHHHHHHHHhccccCCCCc
Confidence 5667777777775 333444445555555543222221111 1233333333332 24555555555544221 22
Q ss_pred -hHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHcCChHHHHHhhcc
Q psy664 197 -RQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSG-----GTPDQIRYLIQQGCIEPFCELLTL 261 (379)
Q Consensus 197 -~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~-----~~~~~~~~l~~~~~i~~L~~lL~~ 261 (379)
...++.+-+..+++.+++++... ++.++..|...|+.+++. +......++.....++.|+..+-.
T Consensus 179 ~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 179 RTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred hHHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 45667777779999999999764 678999999999998876 666666677766677777765533
No 343
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=60.58 E-value=40 Score=23.25 Aligned_cols=37 Identities=32% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 294 YVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 294 ~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
-.+.+.+.++-..+..|-.|++++|...|..++..+-
T Consensus 34 t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 34 TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3577888887888899999999999999999998653
No 344
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=60.54 E-value=1.6e+02 Score=28.24 Aligned_cols=138 Identities=9% Similarity=0.097 Sum_probs=72.2
Q ss_pred hhhHHHHHHhhcC----CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCC
Q psy664 80 APALACLSRLLFH----ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 80 ~~~l~~L~~lL~~----~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~ 154 (379)
..++..|..++.. +|+-+.....+++..+.+.-......+++. .+..+....++ .++..-.....+++.+.+..
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 3555666666653 345555566666665554433333333322 33333333333 36666666666665554321
Q ss_pred c---hhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-H----H----HHHHHh------cCchHHHHHHH
Q psy664 155 D---QQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR-Q----Q----IQAVID------ANIFPSLIEIL 216 (379)
Q Consensus 155 ~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~----~----~~~~~~------~~~i~~Li~ll 216 (379)
. ...-.-++..++|.+..+|+++-.+..-++..+++.+....+ . . ...++. .|-+|.++++|
T Consensus 104 ~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL 183 (435)
T PF03378_consen 104 CEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLL 183 (435)
T ss_dssp -GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHH
Confidence 1 111124566788999999988777888888888887755332 1 1 111211 26678888777
Q ss_pred Hh
Q psy664 217 QK 218 (379)
Q Consensus 217 ~~ 218 (379)
+.
T Consensus 184 ~a 185 (435)
T PF03378_consen 184 QA 185 (435)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 345
>PLN03205 ATR interacting protein; Provisional
Probab=59.84 E-value=1.5e+02 Score=27.77 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=89.3
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCC---ChHHHHHHHhcCcH---HHHHHh-hcCCChHHHHHHHHHHHHhh
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDG---PNEKIQAVIDAGVC---RRLVEL-LMHDQHKVVSAALRAVGNIV 151 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~i---~~L~~l-L~~~~~~i~~~al~~L~nl~ 151 (379)
.+..+..|+.+..-++..+...+++.|..+..+ +....+.--+...+ +.+.+. ..+..+.++..|+.++--|.
T Consensus 321 lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 321 LKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 345566666666666777777777666544322 11111211122222 122222 23567788888998888887
Q ss_pred cCCchhhH--HHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHH-----------hc-----------
Q psy664 152 TGDDQQTQ--VILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVI-----------DA----------- 206 (379)
Q Consensus 152 ~~~~~~~~--~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~-----------~~----------- 206 (379)
...+.+.+ .+....++..+.++|+... ..|+++|...+--+.. .+.....+. ++
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~ 479 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEA 479 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHH
Confidence 66555543 3333345666788887665 7889999887765432 222221111 00
Q ss_pred --CchHHHHHHHHh-----CcHHHHHHHHHHHHHHhcCCC
Q psy664 207 --NIFPSLIEILQK-----AEFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 207 --~~i~~Li~ll~~-----~~~~v~~~a~~~l~nl~~~~~ 239 (379)
.++.-|.+++.. .|.++++.++..|+-+.+.|.
T Consensus 480 fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 480 FGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 123334444432 367889999999998876654
No 346
>KOG2005|consensus
Probab=59.38 E-value=2e+02 Score=29.01 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC
Q psy664 167 LMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 167 l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~ 239 (379)
+..+-.+|+..++.+|+..--+++-++.++|+. +++..|-+..+.+|.++..++..+++-+= +|+
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiG-AGT 706 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIG-AGT 706 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhcccc-CCc
Confidence 556777888899999999999999998888853 67889999999999999999999998754 443
No 347
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=59.15 E-value=1.1e+02 Score=25.73 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=82.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHH-HHHHHHhhcCCchhhHH
Q psy664 83 LACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAA-LRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 83 l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~a-l~~L~nl~~~~~~~~~~ 160 (379)
...+..+..++..+.+.-++..+.......+ ...++.+-..+.. ++..+.... -.+++.+....
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~--------~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLT--------EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG----------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhh--------HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 3445556666677777777766654331111 0134455555554 455555444 44455443211
Q ss_pred HhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 161 ILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
....+.+.+.+.+++.-+++.++-++...... .... .++..+...+.+.+..+++...|+|..+. ..++
T Consensus 119 ---~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~-~~~~ 187 (213)
T PF08713_consen 119 ---PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDEEYYVQKAIGWALREIG-KKDP 187 (213)
T ss_dssp ---GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHC-TT-H
T ss_pred ---HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHH-HhCH
Confidence 34677788889999988888887666554433 1111 23344445567788999999999999987 5566
Q ss_pred HHHHHHHH
Q psy664 241 DQIRYLIQ 248 (379)
Q Consensus 241 ~~~~~l~~ 248 (379)
+....+++
T Consensus 188 ~~v~~~l~ 195 (213)
T PF08713_consen 188 DEVLEFLQ 195 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
No 348
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=58.75 E-value=21 Score=30.20 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=82.1
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-CChHHHHHHHHH-HHHhcCCChHHHHHHHhcCcHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-ADPDVLADACWA-ISYLSDGPNEKIQAVIDAGVCRR 127 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~a-L~~l~~~~~~~~~~~~~~g~i~~ 127 (379)
+...+.+..++.++...... .....++.+-.++.. ++.++....|.. ++.+... .....+.
T Consensus 62 ~~~~E~~~la~~il~~~~~~--------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~---------~~~~~~~ 124 (213)
T PF08713_consen 62 SGYREERYLALLILDKRRKK--------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK---------HPEALEL 124 (213)
T ss_dssp SSCHHHHHHHHHHHHHCGGG----------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH---------HGGHHHH
T ss_pred CchHHHHHHHHHHhHHHhhh--------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh---------hHHHHHH
Confidence 44556655666555432211 111256666666664 346666665433 3333211 0346777
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy664 128 LVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA 206 (379)
Q Consensus 128 L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 206 (379)
+...+.++++-.++.++-++...... .... .++..+...+.+++.-|++...|+|..++..+++.....+..
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88888999999999887776555433 1111 345566677788889999999999999999998887776655
No 349
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=58.09 E-value=47 Score=28.06 Aligned_cols=101 Identities=14% Similarity=0.259 Sum_probs=45.3
Q ss_pred HHHHHHhcCcHHHHHHhhcCC---C---------------hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC
Q psy664 115 KIQAVIDAGVCRRLVELLMHD---Q---------------HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS 176 (379)
Q Consensus 115 ~~~~~~~~g~i~~L~~lL~~~---~---------------~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 176 (379)
..+.+.+.|++..++.+|..+ . ..+...+.+.|..++.++......+.+. ++.+...+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 445556668888888777642 1 3567889999999998887776655543 4444444433
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh
Q psy664 177 PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218 (379)
Q Consensus 177 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~ 218 (379)
.....-..+..++..+..++++....+.+.. +..++.++..
T Consensus 113 ~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred hhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 2222223456666666677777666665543 7777777766
No 350
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=56.65 E-value=87 Score=28.73 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHhcC--cHHHHHHhhcCC---ChHHHHHHHHHHHHhhcCCchhhHHHh------hcC
Q psy664 97 VLADACWAISYLSDGPNEKIQAVIDAG--VCRRLVELLMHD---QHKVVSAALRAVGNIVTGDDQQTQVIL------NCS 165 (379)
Q Consensus 97 v~~~a~~aL~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~~---~~~i~~~al~~L~nl~~~~~~~~~~~~------~~~ 165 (379)
++-.|+..+.++.. .......++..+ ++..|++++..+ ...++..|+.+|.-|+.......+.+- ..|
T Consensus 238 iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 238 IRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 34444444444443 335556677766 999999999875 567899999999999975544443221 335
Q ss_pred cHHHHHH
Q psy664 166 ALMCLLH 172 (379)
Q Consensus 166 ~l~~L~~ 172 (379)
+++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6655554
No 351
>KOG2038|consensus
Probab=56.59 E-value=1.1e+02 Score=31.37 Aligned_cols=102 Identities=19% Similarity=0.112 Sum_probs=72.0
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
..+..|..+....=+.++..++.++..+..+.++.... ++..+++-|.+++..+...|-..|-+|....+.....
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 44555555545555899999999999888887766553 4678899999999999999999999998877766554
Q ss_pred HhhcCcHHHHHHhhcCCC--hhhHHHHHHHHHHh
Q psy664 161 ILNCSALMCLLHLIQSPK--ESIRKEACWAVSNI 192 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~nl 192 (379)
++ .-+-+++..++ ..-...|...|+.+
T Consensus 379 vi-----~EIer~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 379 VI-----DEIERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred hH-----HHHHHHHcccCccccceeehhhhhhhh
Confidence 44 33556665544 33345555555554
No 352
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=55.86 E-value=18 Score=30.53 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=40.8
Q ss_pred chhHHHHHhCCChHHHHhcC----CCC---------------hhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhh
Q psy664 30 PSVETMSLDNNILYPLIDKP----KNR---------------LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLL 90 (379)
Q Consensus 30 ~~~r~~i~~~g~i~~Ll~lL----~~~---------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 90 (379)
....+.+.+.|++..++.+| +.. ..+.+.+...|..+|++... .-.....-++.+...+
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~--NQ~~l~~~~~~l~~~~ 110 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRE--NQKYLFKHLDFLISIF 110 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHH-----H
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHhHHHHHH
Confidence 34456788999999999998 222 35667788888888877421 1112222333222222
Q ss_pred cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 91 FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 91 ~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
.......-..+..++..+..++.+....+.+. .+..+++++..... ...-+..|+.++.
T Consensus 111 ~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr--~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 111 MQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGR--QPRYLDFLSSLCV 169 (207)
T ss_dssp HCCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCC--ChHHHHHHhhhcc
Confidence 22111111234455556666665555554443 37777777766331 2334555555554
No 353
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=55.41 E-value=90 Score=28.85 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=51.4
Q ss_pred hhhHHHHHHhhcCC-------ChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC----------CChHHHHH
Q psy664 80 APALACLSRLLFHA-------DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH----------DQHKVVSA 142 (379)
Q Consensus 80 ~~~l~~L~~lL~~~-------d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----------~~~~i~~~ 142 (379)
..++|.+++++... +.......+..+..|..++.-..+..+. .++|.++.++-. ++..+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45789998888632 5667777778888888776544443333 378888877632 34678999
Q ss_pred HHHHHHHhhcC
Q psy664 143 ALRAVGNIVTG 153 (379)
Q Consensus 143 al~~L~nl~~~ 153 (379)
|..+|+.++..
T Consensus 288 AA~ll~~i~~~ 298 (343)
T cd08050 288 AARLLAQICRK 298 (343)
T ss_pred HHHHHHHHHHH
Confidence 99999998853
No 354
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=53.61 E-value=1.8e+02 Score=26.66 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=102.1
Q ss_pred cCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc--CChH
Q psy664 122 AGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA--GNRQ 198 (379)
Q Consensus 122 ~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~~ 198 (379)
..++..+..++.. .++......+.+++.=...- ..-+...++..+.+-+.+..+.+|+.-+..++.+.. .+..
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 3456667777665 47777777777776433211 111233566778888888888899888888888654 1111
Q ss_pred HHHHHHhcCchHHHHHHHHhC----cHHHH---HHHHHHHHHHhcCCCHHHHHH-------HHHcCChHHHH--Hhhcc-
Q psy664 199 QIQAVIDANIFPSLIEILQKA----EFKTR---KEAAWAITNATSGGTPDQIRY-------LIQQGCIEPFC--ELLTL- 261 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~ll~~~----~~~v~---~~a~~~l~nl~~~~~~~~~~~-------l~~~~~i~~L~--~lL~~- 261 (379)
... +. ..++|.+++.++.. -+..+ ..++.++.-+. ....+.+.. +.-..-...|. +++..
T Consensus 97 ~~~-~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl 173 (339)
T PF12074_consen 97 SLK-FA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALS-SWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL 173 (339)
T ss_pred HHH-HH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhc-cccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence 111 22 25777777777542 11111 12222222211 111111110 00000000000 11222
Q ss_pred CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCCcc
Q psy664 262 LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE--NIEIYQKAFDIIEHYFGSEEE 335 (379)
Q Consensus 262 ~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~--~~~v~~~a~~il~~~~~~~~~ 335 (379)
.+.+-....+.++..++........ . .. ...+-+.+..++.|+ ...+|+.|...+.++|.....
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~----~-~~-----~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELS----S-DK-----SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhh----h-hH-----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 3445566677777777765443321 0 00 122356667777777 789999999999988776543
No 355
>KOG1822|consensus
Probab=52.76 E-value=4.2e+02 Score=30.57 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=59.0
Q ss_pred cHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC---hhhHHHHHHHHH------Hhh
Q psy664 124 VCRRLVELLMHD-QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK---ESIRKEACWAVS------NIT 193 (379)
Q Consensus 124 ~i~~L~~lL~~~-~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~l~------nl~ 193 (379)
.+..+..+-+++ .+.+++.++.++.-+........ .+.-+-.+..+.+++-+.. .++...--+++. ++.
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ali 1037 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALI 1037 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHH
Confidence 355666666654 56999999999999885544333 2333344555556554322 333333333332 221
Q ss_pred c-------CChH--HHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Q psy664 194 A-------GNRQ--QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG 237 (379)
Q Consensus 194 ~-------~~~~--~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~ 237 (379)
. ++.. ....+ ..-.+-...-++.+.++.++.++..++-++-..
T Consensus 1038 ttlgpeL~~N~~~d~t~~~-rts~la~~allls~~d~lnqa~ai~clqqlhlF 1089 (2067)
T KOG1822|consen 1038 TTLGPELGPNGDKDSTSTL-RTSCLAACALLLSHSDPLNQAAAIKCLQQLHLF 1089 (2067)
T ss_pred HhcccccCCCCcccchhHH-HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhh
Confidence 1 1111 11111 111222233344556888999999999887543
No 356
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=52.47 E-value=1.2e+02 Score=24.58 Aligned_cols=77 Identities=10% Similarity=0.058 Sum_probs=51.0
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHH-hhcCCC--hHHHHHHHHHHHHhhcCC
Q psy664 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVE-LLMHDQ--HKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~--~~i~~~al~~L~nl~~~~ 154 (379)
....+.+.+.+.+.+++..+...++..+..+...-....+.-++ -+++.++. ++.++. ..-++.++.++..++...
T Consensus 70 lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 70 LKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 34577888888887777999999999999888432222221111 13555555 566543 456788999999999754
Q ss_pred c
Q psy664 155 D 155 (379)
Q Consensus 155 ~ 155 (379)
.
T Consensus 149 ~ 149 (168)
T PF12783_consen 149 Q 149 (168)
T ss_pred h
Confidence 3
No 357
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=51.45 E-value=1.3e+02 Score=24.31 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHH-hhcCCC--hhhHHHHHHHHHHhh
Q psy664 117 QAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLH-LIQSPK--ESIRKEACWAVSNIT 193 (379)
Q Consensus 117 ~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~~~~--~~v~~~a~~~l~nl~ 193 (379)
..+++..+.+.+++.+.+++..+...+++++..+...-....+.-+ +-+++.+.. ++.++. ..-|..++.++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~el-e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLEL-EVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 3355667888899888888899999999999999853222222111 123444444 565444 467788899999998
Q ss_pred cCCh
Q psy664 194 AGNR 197 (379)
Q Consensus 194 ~~~~ 197 (379)
..+.
T Consensus 146 ~~p~ 149 (168)
T PF12783_consen 146 KDPQ 149 (168)
T ss_pred hChh
Confidence 6443
No 358
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=50.36 E-value=1.3e+02 Score=27.76 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC-------ChhhHHHHHHHHHHhhcCCh
Q psy664 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP-------KESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~nl~~~~~ 197 (379)
...+.+.+..++...+..|+..|.. ++... .++|+++.++... +.........++..|.....
T Consensus 180 f~~It~a~~~~~~~~r~~aL~sL~t----D~gl~------~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 180 FEEITEALVGSNEEKRREALQSLRT----DPGLQ------QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcc----CCCch------hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 3445555555666667776666552 22221 3578888777432 33344444555555543322
Q ss_pred HHHHHHHhcCchHHHHHHHHh----------CcHHHHHHHHHHHHHHhc
Q psy664 198 QQIQAVIDANIFPSLIEILQK----------AEFKTRKEAAWAITNATS 236 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~----------~~~~v~~~a~~~l~nl~~ 236 (379)
-.+..- -+-++|.++.++-. .+..+|..|+..+..++.
T Consensus 250 l~le~Y-lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 250 LHLEPY-LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CchHHh-HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 222222 23478888877632 234678888888888774
No 359
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=49.84 E-value=1.7e+02 Score=25.23 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcH------------------HHHHHHHHHHHHHhcCCCH
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEF------------------KTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~------------------~v~~~a~~~l~nl~~~~~~ 240 (379)
.......|..+..+... ++....+.+.++++.+.+.|..-|+ ..-..-...|+.+ ..++
T Consensus 78 ~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~l--S~~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVL--SSTP 154 (226)
T ss_pred hHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHH--hCCh
Confidence 45566777777777554 6777777788999999888865421 1233334456665 4577
Q ss_pred HHHHHHHHcCChHHHHHhhccCCH-HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHH
Q psy664 241 DQIRYLIQQGCIEPFCELLTLLDA-KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIY 319 (379)
Q Consensus 241 ~~~~~l~~~~~i~~L~~lL~~~d~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~ 319 (379)
...+.|-+.+++..+..+.+.++. ++....+..| .+. .+..+..+ |...+.+.++.++
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~~~l~klil~~L----DY~---------~~~~~R~i--------LsKaLt~~s~~iR 213 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSRDDLLKLILSSL----DYS---------VDGHPRII--------LSKALTSGSESIR 213 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCchHHHHHHHHhhC----CCC---------CccHHHHH--------HHHHHhcCCHHHH
Confidence 888888889999999999877533 3333322222 221 22223333 4677888999999
Q ss_pred HHHHHHHHHhc
Q psy664 320 QKAFDIIEHYF 330 (379)
Q Consensus 320 ~~a~~il~~~~ 330 (379)
..|...|..+.
T Consensus 214 l~aT~~L~~ll 224 (226)
T PF14666_consen 214 LYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 360
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=49.38 E-value=27 Score=26.06 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHH
Q psy664 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKII 267 (379)
Q Consensus 227 a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 267 (379)
.+..+..+ +..++....+++.|+++.|+.||.+++.++.
T Consensus 66 ~Ik~l~~L--a~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 66 EIKKLSVL--ATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHc--cCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 44455555 4577888899999999999999999887664
No 361
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=48.76 E-value=68 Score=24.52 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhh---ccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHH-
Q psy664 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL---TLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIE- 299 (379)
Q Consensus 224 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL---~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~- 299 (379)
....+.-|+..+ ... .....+ ++.+..-| +..+..+...+|..|..++..+.... ...+.
T Consensus 20 ~~~~l~eIa~~t-~~~-~~~~~I-----~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~---------~~~~~~ 83 (125)
T PF01417_consen 20 PGKLLAEIAQLT-YNS-KDCQEI-----MDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF---------VDELRD 83 (125)
T ss_dssp -HHHHHHHHHHT-TSC-HHHHHH-----HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH---------HHHHHH
T ss_pred CHHHHHHHHHHH-hcc-ccHHHH-----HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH---------HHHHHH
Confidence 334455666665 333 333333 55566666 45667889999999999999987653 23332
Q ss_pred HhccHHHHHHhhc-CC-----CHHHHHHHHHHHHHhcC
Q psy664 300 ECYGLDKIEFLQS-HE-----NIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 300 ~~g~l~~l~~l~~-~~-----~~~v~~~a~~il~~~~~ 331 (379)
....++.+..+.. ++ ...|+++|..+++-+.+
T Consensus 84 ~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 84 HIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp THHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 2223333333322 11 13599999999987664
No 362
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=48.58 E-value=33 Score=30.86 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=43.3
Q ss_pred hcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC------CH-------HHHHHHHHcCChHHHHHhhc
Q psy664 205 DANIFPSLIEILQKAEFKTRKEAAWAITNATSGG------TP-------DQIRYLIQQGCIEPFCELLT 260 (379)
Q Consensus 205 ~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~------~~-------~~~~~l~~~~~i~~L~~lL~ 260 (379)
+...+..+++.|..++...|..|+.+|..++.+. .. .+...+.+.|+++.++.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3467778888888999999999999999988432 12 33446678899999999874
No 363
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=48.43 E-value=81 Score=21.72 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy664 295 VVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 295 ~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~ 329 (379)
.+.+.+.++-..+..|-.|++++|+..|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 46788888888889999999999999999998865
No 364
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=47.56 E-value=1.4e+02 Score=29.90 Aligned_cols=113 Identities=14% Similarity=0.301 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHH--hC-cH--HHHHHHHHHHHHHhcCCCHHHH----HHHHHc
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ--KA-EF--KTRKEAAWAITNATSGGTPDQI----RYLIQQ 249 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~--~~-~~--~v~~~a~~~l~nl~~~~~~~~~----~~l~~~ 249 (379)
-.-....||+++.++..-.+....-.--++++.|..+-. ++ |. -+..+..++++. .+... .++ .
T Consensus 497 w~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQ-----YpRFLkahw~FL--k 569 (1053)
T COG5101 497 WNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQ-----YPRFLKAHWSFL--K 569 (1053)
T ss_pred hhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeecc-----chHHHHHHHHHH--H
Confidence 445677899999997543333221111145555555432 22 11 122222222222 22211 112 2
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhh--hcCCcchHHHHH
Q psy664 250 GCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK--QTGSVNPYVVLI 298 (379)
Q Consensus 250 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~i 298 (379)
-++..|.++++.....++..||+.+..|.+..+-..- +.+..++|...+
T Consensus 570 TVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~I 620 (1053)
T COG5101 570 TVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYI 620 (1053)
T ss_pred HHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHH
Confidence 4578899999998889999999999999988765432 225567776555
No 365
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=46.29 E-value=29 Score=18.39 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHhh
Q psy664 181 IRKEACWAVSNIT 193 (379)
Q Consensus 181 v~~~a~~~l~nl~ 193 (379)
||..|+++|+++-
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 6889999999983
No 366
>KOG2213|consensus
Probab=45.39 E-value=2.7e+02 Score=26.22 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=98.1
Q ss_pred HhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc------------CCChHHHHHHHHHHH-HhcCC
Q psy664 46 IDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF------------HADPDVLADACWAIS-YLSDG 111 (379)
Q Consensus 46 l~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~------------~~d~~v~~~a~~aL~-~l~~~ 111 (379)
+.+. +.+..++++|+.-|-.+|.++. ...+.+.|+++|+ ..|.++++.++--|. .+-.-
T Consensus 67 ~d~~ed~d~~ir~qaik~lp~fc~~d~-------~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l 139 (460)
T KOG2213|consen 67 LDLCEDDDVGIRRQAIKGLPLFCKGDA-------LSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITL 139 (460)
T ss_pred hccccccchhhHHHHHhccchhccCch-------hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 4455 6678889999999999998842 2335555666554 235666666665553 44444
Q ss_pred ChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCC----chhhHHHhhcCcHHHHHHh--hcCCChhhHHHH
Q psy664 112 PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD----DQQTQVILNCSALMCLLHL--IQSPKESIRKEA 185 (379)
Q Consensus 112 ~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~----~~~~~~~~~~~~l~~L~~l--L~~~~~~v~~~a 185 (379)
..+....-++..++..+-..|.+-..+-....+..|+++.... ....+.+.+. ..-+..+ +.-++++....-
T Consensus 140 ~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~--~e~~a~ldaf~~sD~d~VdRf 217 (460)
T KOG2213|consen 140 KGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEE--QEGLADLDAFNVSDADYVDRF 217 (460)
T ss_pred cHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHH--HhhhhccCcccCCChHHHHHH
Confidence 4444444555556666666666644444455566666665432 1111111110 0111111 233333333332
Q ss_pred H----HHHHHhhcCChHHH-HHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhh
Q psy664 186 C----WAVSNITAGNRQQI-QAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259 (379)
Q Consensus 186 ~----~~l~nl~~~~~~~~-~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL 259 (379)
+ .++--++.+.+... -..+...++|.- ......+.+-+.+.+|+.+.+..+.+....+ ++.++++|
T Consensus 218 isCl~~AvPfFargapSskf~~y~n~~~ip~~---fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~-----Lpsi~elL 288 (460)
T KOG2213|consen 218 ISCLLMAVPFFARGAPSSKFVEYLNKHIIPHH---FDKLTEERKLDLLKALAEMSSYTTAQAARQM-----LPSIVELL 288 (460)
T ss_pred HHHHHHhhhhhhcCCchhHHHHHHHhhhcccc---cccchHHHHHHHHHHHHHhCccchHHHHHHH-----HHHHHHHH
Confidence 2 22233444433322 123333455441 1111256777888888888654443333333 55555554
No 367
>KOG1993|consensus
Probab=45.36 E-value=3.7e+02 Score=27.90 Aligned_cols=158 Identities=19% Similarity=0.225 Sum_probs=91.7
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHH-HHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 81 PALACLSRLLFHADPDVLADACWAI-SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL-~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
+++|.+...+....+. ...++..+ +|+--++..... ....|+.+.+..++..-..+-....+.++..+...++ ...
T Consensus 699 ~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~ 775 (978)
T KOG1993|consen 699 LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILG 775 (978)
T ss_pred HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHH
Confidence 3445555554432222 22333333 344444433222 3345788888888887666667778888888776554 344
Q ss_pred HHhhcCcHHHHHHhh--cCCChhhHHHHHHHHHHhhcCChHHHHHHHhc-CchHHHHH-HH-------Hh-CcHHHHHHH
Q psy664 160 VILNCSALMCLLHLI--QSPKESIRKEACWAVSNITAGNRQQIQAVIDA-NIFPSLIE-IL-------QK-AEFKTRKEA 227 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-~~i~~Li~-ll-------~~-~~~~v~~~a 227 (379)
.....+++|.+..-+ +.+.+.+...-..+++.+..-+++..-.+++. +-.+.++. ++ .+ .+++-||--
T Consensus 776 ~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~ 855 (978)
T KOG1993|consen 776 SLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLN 855 (978)
T ss_pred hhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHH
Confidence 455678888877655 33447888888888888877777766555432 22223331 11 11 356777777
Q ss_pred HHHHHHHhcCCCHH
Q psy664 228 AWAITNATSGGTPD 241 (379)
Q Consensus 228 ~~~l~nl~~~~~~~ 241 (379)
+-+++.+...+++.
T Consensus 856 ~LalsSll~t~~~~ 869 (978)
T KOG1993|consen 856 TLALSSLLRTNNPD 869 (978)
T ss_pred HHHHHHHhccCCcH
Confidence 77777776554443
No 368
>KOG4524|consensus
Probab=45.03 E-value=1.1e+02 Score=32.23 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=69.8
Q ss_pred cCcHHHHHHhhcCCChHHHHHHHHHHHHhh----cCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy664 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIV----TGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 122 ~g~i~~L~~lL~~~~~~i~~~al~~L~nl~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
..++.+...+|.+++-.++..|+.++.... ...+.....+ ...=|.++..+..+++-+...|+.++.+++..+.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 356778888899999999999999987543 2222222211 2344667778888899999999999999998777
Q ss_pred HHHHHHHhcCchHHHHHHHHhC
Q psy664 198 QQIQAVIDANIFPSLIEILQKA 219 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~~ 219 (379)
+.+..=+-..++|.+-+++.+.
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 7666545557888888777653
No 369
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=44.97 E-value=24 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=21.0
Q ss_pred HhccHHHHHHhhcCCCHHHHHHHHHHH
Q psy664 300 ECYGLDKIEFLQSHENIEIYQKAFDII 326 (379)
Q Consensus 300 ~~g~l~~l~~l~~~~~~~v~~~a~~il 326 (379)
.....+.+..-+.++++.|++.|..+|
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 334567778888899999999998764
No 370
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=44.89 E-value=41 Score=18.06 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHh
Q psy664 180 SIRKEACWAVSNI 192 (379)
Q Consensus 180 ~v~~~a~~~l~nl 192 (379)
.+|..|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5799999999998
No 371
>KOG1993|consensus
Probab=44.88 E-value=3.8e+02 Score=27.85 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=48.5
Q ss_pred CchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHHHHHHHcHH
Q psy664 207 NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 207 ~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~ 283 (379)
|+.+.+.+++.+-..+-....+.++..++. .......+...++++.+..-.-. +-|.+....+..++++.-..++
T Consensus 740 ~i~k~~~~~l~dvr~egl~avLkiveili~--t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~ 816 (978)
T KOG1993|consen 740 GIFKKLNDLLDDVRNEGLQAVLKIVEILIK--TNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPS 816 (978)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChH
Confidence 677778888777666666677777777763 22345555667777777765533 4456666777777776655443
No 372
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=44.40 E-value=1.3e+02 Score=24.90 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=54.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy664 126 RRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205 (379)
Q Consensus 126 ~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 205 (379)
+.+.....+++.-+++.+.-++....... ... ..+++.+..++.+++.-|++...|+|..++...++....+++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~-~~~-----~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE-TDF-----DLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc-ccH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 56677788899999998888887765431 111 134566667777778999999999999998887776655544
Q ss_pred c
Q psy664 206 A 206 (379)
Q Consensus 206 ~ 206 (379)
.
T Consensus 182 ~ 182 (197)
T cd06561 182 K 182 (197)
T ss_pred H
Confidence 3
No 373
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=44.22 E-value=62 Score=29.14 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=31.4
Q ss_pred ChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q psy664 75 DFAKVAPALACLSRLLFHADPDVLADACWAISYLSDG 111 (379)
Q Consensus 75 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~ 111 (379)
........+..++.-|...+...+..|+.+|.+++.+
T Consensus 54 ~~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G 90 (293)
T PF07923_consen 54 SFDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQG 90 (293)
T ss_pred chhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcC
Confidence 3445567888899999999999999999999999976
No 374
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=44.22 E-value=2.5e+02 Score=25.58 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHhhc--------C----cHHHHHHhhc------CCChhhHHHHHHHHHHhhcCCh
Q psy664 136 QHKVVSAALRAVGNIVTGDDQQTQVILNC--------S----ALMCLLHLIQ------SPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 136 ~~~i~~~al~~L~nl~~~~~~~~~~~~~~--------~----~l~~L~~lL~------~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
.-.+|.+|+.++...+.++++.+..+++. . .-. |...|- +.++--...|+.++..+...++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~n-l~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIAN-LLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS--HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhH-HHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 56788899999999888877766555422 1 112 333333 2234445678888999888888
Q ss_pred HHHHHHHhc------------CchHHHHHHHHh-----CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHHhh
Q psy664 198 QQIQAVIDA------------NIFPSLIEILQK-----AEFKTRKEAAWAITNATSGGTPDQIRYLIQQ-GCIEPFCELL 259 (379)
Q Consensus 198 ~~~~~~~~~------------~~i~~Li~ll~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~-~~i~~L~~lL 259 (379)
+....++.- .+++.+..+|.. .++.++..-+..|+-.+ .+++..+..+.+. ..++.|+...
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL-~e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWL-FECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHH-TT-HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHH-hCCHHHHHHHHcCcchHHHHHHHh
Confidence 776655432 145666665543 36777777777777776 8888888877765 5788888875
Q ss_pred cc---CCHHHHHHHHHHHHHHHHHc
Q psy664 260 TL---LDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 260 ~~---~d~~v~~~al~~L~~l~~~~ 281 (379)
.. .+.-|+.-+.-.|+-+..+.
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhc
Confidence 33 45677777777777777765
No 375
>KOG2676|consensus
Probab=44.00 E-value=28 Score=31.87 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh--hcCCChHHHHHHHHHHHHhhcCCchhhHHH
Q psy664 100 DACWAISYLSDGPNEKIQAVIDAGVCRRLVEL--LMHDQHKVVSAALRAVGNIVTGDDQQTQVI 161 (379)
Q Consensus 100 ~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l--L~~~~~~i~~~al~~L~nl~~~~~~~~~~~ 161 (379)
+....+++|+...++..+.+.+-|+++.++.- +++.+|-+++.++.|+.++...+.+..+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 35678889998877888888888888888765 445789999999999999998776665543
No 376
>PLN03205 ATR interacting protein; Provisional
Probab=43.94 E-value=2.8e+02 Score=26.12 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=88.9
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhc---CCchhhHHHhhcCcHHHHHHhh----cCCChhhHHHHHHHHHHhhcCC
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVT---GDDQQTQVILNCSALMCLLHLI----QSPKESIRKEACWAVSNITAGN 196 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~l~nl~~~~ 196 (379)
+++.|+.+-.-.+..+...+++.|..+.. ++......-.+.+.+..+--+. .+....|+.+|..++.-|...+
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 34566666666777777788877766543 2322222223333333222111 2455788889887766654433
Q ss_pred hH--HHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCHHHHHHHH---------------------H---c
Q psy664 197 RQ--QIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPDQIRYLI---------------------Q---Q 249 (379)
Q Consensus 197 ~~--~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~---------------------~---~ 249 (379)
.. ....+....++..+-.+|+.. ...|+++|+..+.-++. .+.....+. . .
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN--CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fS 481 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN--CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFG 481 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc--CcHHHHHHhcCCccccccccccccccccccHHHHH
Confidence 22 234555667788888888764 67899999887765431 111111111 0 0
Q ss_pred CChHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHcHHh
Q psy664 250 GCIEPFCELLTL-----LDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 250 ~~i~~L~~lL~~-----~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
.+++-|.+.+.+ .|-++++.+...|.-++..+...
T Consensus 482 sIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~G 521 (652)
T PLN03205 482 KIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSG 521 (652)
T ss_pred HHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCC
Confidence 122333333432 46688888888887777766544
No 377
>KOG1087|consensus
Probab=43.24 E-value=1.3e+02 Score=29.03 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=66.8
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH-HHhhcCcH
Q psy664 89 LLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ-VILNCSAL 167 (379)
Q Consensus 89 lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~-~~~~~~~l 167 (379)
.|..+|..+-...|..+-.--.+.. .++..|.+.+.+.++.++..||..|--++........ .+.+.+++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~---------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK---------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH---------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455666666666655532222221 4577788888888889999999988877776555554 78888999
Q ss_pred HHHHHhhcCC--ChhhHHHHHHHHHH
Q psy664 168 MCLLHLIQSP--KESIRKEACWAVSN 191 (379)
Q Consensus 168 ~~L~~lL~~~--~~~v~~~a~~~l~n 191 (379)
+-++++.... +..||..++.+|-.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHH
Confidence 9999888665 57899998888754
No 378
>KOG0301|consensus
Probab=41.96 E-value=3.9e+02 Score=27.09 Aligned_cols=149 Identities=12% Similarity=0.058 Sum_probs=76.3
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHh---hcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q psy664 128 LVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL---NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVI 204 (379)
Q Consensus 128 L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~---~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 204 (379)
.+..+......++.+|+-+|+-++........... ...++..++..+. .++..+.-++++|.|+-.+ +...+.+.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~ 626 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFM 626 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHH
Confidence 44455667788899999999988865433322211 1234444444444 4577888999999998655 44444333
Q ss_pred hc--CchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc----c-CCHHHHHHHHHHHHHH
Q psy664 205 DA--NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT----L-LDAKIIQVALNGLENI 277 (379)
Q Consensus 205 ~~--~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~----~-~d~~v~~~al~~L~~l 277 (379)
.. -++..++..-...+..++...+....|+.. -.++.-.+.+..+.+...+. . +|.+-....+.||+++
T Consensus 627 s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv----~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 627 SRLESILDPVIEASSLSNKNLQIALATLALNYSV----LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred HHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHH----HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 22 222223222222334444433333333321 11111111234444444332 2 3445556677778887
Q ss_pred HHHcH
Q psy664 278 LKLGE 282 (379)
Q Consensus 278 ~~~~~ 282 (379)
+....
T Consensus 703 ~t~~~ 707 (745)
T KOG0301|consen 703 MTVDA 707 (745)
T ss_pred ccccH
Confidence 76553
No 379
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=41.62 E-value=1.5e+02 Score=22.33 Aligned_cols=69 Identities=22% Similarity=0.161 Sum_probs=46.3
Q ss_pred HhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh-hcCCChHH-HHHHHHHHHHhhcC
Q psy664 79 VAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVEL-LMHDQHKV-VSAALRAVGNIVTG 153 (379)
Q Consensus 79 ~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~i-~~~al~~L~nl~~~ 153 (379)
...++|.+.+.|. +..+|.+..+...++.|+...+=. ..++..+++. +.+....- ...++.++..++..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~------~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS------DEVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc------HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 4568999999999 777999999999999998654311 1233333333 22322222 47899999988853
No 380
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=41.28 E-value=2.5e+02 Score=24.78 Aligned_cols=183 Identities=13% Similarity=0.096 Sum_probs=106.0
Q ss_pred hHHHHhcC---CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhcCCChHHH
Q psy664 42 LYPLIDKP---KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH--ADPDVLADACWAISYLSDGPNEKI 116 (379)
Q Consensus 42 i~~Ll~lL---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~aL~~l~~~~~~~~ 116 (379)
+..|+... =.|......+...+..|.+.+. ........++..+.+-.+. .-...|..+...+..+..+.....
T Consensus 40 v~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~--~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l 117 (262)
T PF14500_consen 40 VQVLLDFFCSRLDDHACVQPALKGLLALVKMKN--FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL 117 (262)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC--CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555555 2344455555667777765542 2222234455555543332 235778888888888876543333
Q ss_pred HHHHhcCcHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc--------CC--Ch-h-hHH
Q psy664 117 QAVIDAGVCRRLVELLMHD-QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ--------SP--KE-S-IRK 183 (379)
Q Consensus 117 ~~~~~~g~i~~L~~lL~~~-~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--------~~--~~-~-v~~ 183 (379)
. -...+++..+++.++.+ ||.-.-.+...+..+...-+. .....-+...+. .+ ++ . .+.
T Consensus 118 ~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~e 189 (262)
T PF14500_consen 118 Q-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITRE 189 (262)
T ss_pred H-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHH
Confidence 2 12236788888888764 788878888888777654331 122233333321 11 11 2 344
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC
Q psy664 184 EACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 184 ~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~ 239 (379)
.-..++.+-...++.. ..-.+|.|++=|.++.+.+|..++.+|..++..-.
T Consensus 190 dLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 190 DLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 4445555532333332 23568899999999999999999999998775443
No 381
>KOG4231|consensus
Probab=40.88 E-value=26 Score=33.71 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=49.1
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
..+..+-.+..+.++.++..|..+++|++-+........-+..+-..+++++....+++-+.+..++.-+.
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 34555566667888999999999999997664433322223344455677777788888888888877653
No 382
>KOG2611|consensus
Probab=40.85 E-value=3.5e+02 Score=26.30 Aligned_cols=262 Identities=10% Similarity=0.071 Sum_probs=139.3
Q ss_pred HHhcC-CCChhHHHHHHHHHHHHhCCCCC---CCChHhHhhhHHHHHHhhcCCC-------hHHHHHHHHHHHHhcCCCh
Q psy664 45 LIDKP-KNRLSMVRNSVWVLSNLCRGKTP---PPDFAKVAPALACLSRLLFHAD-------PDVLADACWAISYLSDGPN 113 (379)
Q Consensus 45 Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~~d-------~~v~~~a~~aL~~l~~~~~ 113 (379)
+..++ ..+++-+-.+....+.++++++- .++.+...-+.+.+-+++.+.+ .-.+.-++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 44555 55666666788888999988642 2344455556777778876432 2234445555555565542
Q ss_pred HH-HHHHHhcCcHHHHHHhhcCC-C------hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHH
Q psy664 114 EK-IQAVIDAGVCRRLVELLMHD-Q------HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEA 185 (379)
Q Consensus 114 ~~-~~~~~~~g~i~~L~~lL~~~-~------~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 185 (379)
-. -+.++ ..||.+...+... + ..+...+-.+|..++.. +.-.+.++..|.++.+.+...-++...-.+.
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 11 12233 3588888887642 2 33678888999988876 4555678899999999988765553333333
Q ss_pred HHHHHHhhc----CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHH-HHHHHcC----ChHHHH
Q psy664 186 CWAVSNITA----GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQI-RYLIQQG----CIEPFC 256 (379)
Q Consensus 186 ~~~l~nl~~----~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~l~~~~----~i~~L~ 256 (379)
.-.+.-+.. +-++.+..+.. ++..+..-+...+...+-+.|..|..+......+.. ..+.... ...-+.
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~ 250 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVV 250 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHH
Confidence 222222221 11222222221 345555555566778899999999976643321111 0111111 111233
Q ss_pred HhhccC-CHHHHHHHHHHHHHHHHH-cHHhhhhcCCcchHHHHHHHhccHHHHHHhh
Q psy664 257 ELLTLL-DAKIIQVALNGLENILKL-GEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ 311 (379)
Q Consensus 257 ~lL~~~-d~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~ 311 (379)
.+|.++ .+.-+..|+....+++.. +++|--...+...|...+...+..+....+-
T Consensus 251 ~IL~~kv~p~qr~pAL~Laa~~~hilG~~W~~~geq~t~fL~ll~~la~~evrl~le 307 (698)
T KOG2611|consen 251 AILQNKVAPSQRLPALILAANMMHILGEKWLLGGEQKTVFLPLLDILADREVRLVLE 307 (698)
T ss_pred HHHhcccCchhcChHHHHHHHHHHHhchhhcccCCccceehhhhcchhhHHHHHhhh
Confidence 344432 234444556665666544 3333211112333445555555555444433
No 383
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=40.76 E-value=1.4e+02 Score=23.78 Aligned_cols=124 Identities=9% Similarity=0.138 Sum_probs=77.1
Q ss_pred CChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcC--CchhhHHHhhcCcHHHHHHhh-cCCChhhHHHHH
Q psy664 111 GPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTG--DDQQTQVILNCSALMCLLHLI-QSPKESIRKEAC 186 (379)
Q Consensus 111 ~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~ 186 (379)
++++..+.+++..++..+++++.. ....++...+.+++-+... ++...-.+...+.+..++..- .-.+.++...=.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 345677888889999999999988 5777888888888877653 222222344445555554432 223456665555
Q ss_pred HHHHHhhc-CChHHHHHHHhc-----CchHHHHHHHHhCcHHHHHHHHHHHHHH
Q psy664 187 WAVSNITA-GNRQQIQAVIDA-----NIFPSLIEILQKAEFKTRKEAAWAITNA 234 (379)
Q Consensus 187 ~~l~nl~~-~~~~~~~~~~~~-----~~i~~Li~ll~~~~~~v~~~a~~~l~nl 234 (379)
..|..++- -+++.++.+.+. .+...-++...++|.-+|..+-..+-|+
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 55555543 333444444432 3555566777788888887766666564
No 384
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=39.44 E-value=6.2e+02 Score=28.73 Aligned_cols=138 Identities=8% Similarity=0.094 Sum_probs=77.3
Q ss_pred CCChHHHHhcC-----CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh
Q psy664 39 NNILYPLIDKP-----KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN 113 (379)
Q Consensus 39 ~g~i~~Ll~lL-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~ 113 (379)
...++.++.+. +.+..++.-+.-....+-... .....+.++..|+..+.+++..-...|+.+|..|+...+
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 45666666665 666666666665555555443 233456789999998877777666899999999996544
Q ss_pred HHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHH
Q psy664 114 EKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRK 183 (379)
Q Consensus 114 ~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 183 (379)
.....+ +..+..++..+..=+..=.+....+++.++......... +...+--.+-+-|.+.+..+++
T Consensus 506 ~~l~~f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~-i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 506 SELQPF--ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSS-IQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HHHHHT--HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---H-HHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchh-hHHHHHHHHHHhhcCCcHHHHH
Confidence 333222 234555566665544444566678888777543221111 1222333455566777666654
No 385
>KOG2011|consensus
Probab=39.18 E-value=3.3e+02 Score=29.30 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=50.8
Q ss_pred HhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 217 QKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 217 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
++-++++|..++..|+-.+ ..-|+ .+.+...+.++-..|.+....||..++.+|..+....+
T Consensus 297 RDV~~~IRaiCiqeLgiWi-~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~ 358 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWI-KSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDE 358 (1048)
T ss_pred ccCchHHHHHHHHHHHHHH-HhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccc
Confidence 3457999999999999876 33333 56677789999999999999999999999999998743
No 386
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=38.44 E-value=2e+02 Score=23.33 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=52.8
Q ss_pred hCCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcC
Q psy664 38 DNNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSD 110 (379)
Q Consensus 38 ~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~ 110 (379)
..|.+...++.+ -.|..+...+..++.+....+ .........++|.+..+|.+..+.-...++..+..+..
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~--~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE--KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC--cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 455666666666 557777778887777665553 35555667899999999999999888888888877763
No 387
>KOG2005|consensus
Probab=38.26 E-value=4.5e+02 Score=26.77 Aligned_cols=66 Identities=26% Similarity=0.309 Sum_probs=41.7
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChH--HHHHHHHHHHHhhcC
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHK--VVSAALRAVGNIVTG 153 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~--i~~~al~~L~nl~~~ 153 (379)
.++-.|...+++++..++..++..|+-.-.++ +++.+. ..|..++.+.+.. +..-|.-+||-+..+
T Consensus 452 palALLsdyv~~~~s~~ri~aIlGLglayaGs--q~e~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvG 519 (878)
T KOG2005|consen 452 PALALLSDYLQSSSSIHRIGAILGLGLAYAGS--QREEVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVG 519 (878)
T ss_pred HHHHHHHHhccCCCceeehHHhhhhHHhhcCC--chHHHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEe
Confidence 46666777888888888888888887554443 222222 2566666665544 555566666776654
No 388
>KOG2229|consensus
Probab=38.02 E-value=2.2e+02 Score=27.73 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=75.9
Q ss_pred cHHHHHHhhcCC----ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHH
Q psy664 166 ALMCLLHLIQSP----KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPD 241 (379)
Q Consensus 166 ~l~~L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~ 241 (379)
+-.-|..+|... ++.++...+.+|.-|-..+. +.-..++..++.++..+|...|+-+..=|...+...+..
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~ 91 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKK 91 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhh
Confidence 334466666543 47888888877766532111 112256677788888888777766554443332211111
Q ss_pred HHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHH
Q psy664 242 QIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQK 321 (379)
Q Consensus 242 ~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~ 321 (379)
....=.....-..+..+|+.+|+.--..++..+.-+..... +.+..-+..+..-.-|.++.|.-.
T Consensus 92 ~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~i---------------W~d~~tV~i~~~acf~~~~ki~vs 156 (616)
T KOG2229|consen 92 HKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNI---------------WNDSKTVNIITTACFSKVPKILVS 156 (616)
T ss_pred cccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcc---------------cccchhHHHHHHHHhccCcHHHHh
Confidence 11111111224467778888887655556666655554332 223344455544466777777766
Q ss_pred HHHH
Q psy664 322 AFDI 325 (379)
Q Consensus 322 a~~i 325 (379)
+..+
T Consensus 157 ~l~F 160 (616)
T KOG2229|consen 157 GLRF 160 (616)
T ss_pred hhHH
Confidence 6654
No 389
>KOG2022|consensus
Probab=38.02 E-value=5.1e+02 Score=27.31 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-----CChHHHHHHHHHHHHhhc---CCchhhHHHhhcCcH
Q psy664 96 DVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-----DQHKVVSAALRAVGNIVT---GDDQQTQVILNCSAL 167 (379)
Q Consensus 96 ~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~al~~L~nl~~---~~~~~~~~~~~~~~l 167 (379)
...+.++..+-.++.+..... ...++++++..-+ .++++...+...+|.++. ..+.+ -.-.+
T Consensus 482 ~~tEaci~~~~sva~~~~~t~-----~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~-----ln~sl 551 (982)
T KOG2022|consen 482 NRTEACIFQFQSVAEYLGETE-----STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMY-----LNPSL 551 (982)
T ss_pred HHHHHHHHHHHHHHhhcCcch-----hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcc-----cCchH
Confidence 444555555555554432211 1246777766543 377787777777776653 22222 13467
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC--cHHHHHHHHHHHHHHhcCCCHH
Q psy664 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA--EFKTRKEAAWAITNATSGGTPD 241 (379)
Q Consensus 168 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~--~~~v~~~a~~~l~nl~~~~~~~ 241 (379)
|.|.+-|++++ .-..+...+..+|...++....-.+ +++..+-..+..+ .+..+...+.+++.+++...++
T Consensus 552 ~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pE 624 (982)
T KOG2022|consen 552 PLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPE 624 (982)
T ss_pred HHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHH
Confidence 88888887543 4445566688888777666554443 4555555555443 3566777888888887655544
No 390
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=37.74 E-value=1.8e+02 Score=23.18 Aligned_cols=101 Identities=21% Similarity=0.165 Sum_probs=51.7
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhc-CCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLS-DGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~-~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
..-...++.+|+.+...-....+..|.+=. -+.++ ..-++.+++..++.-=.....--...|+..||.+.-|-
T Consensus 21 a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~--AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY---- 94 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE--AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY---- 94 (154)
T ss_dssp HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H--HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST----
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh--HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC----
Confidence 344556677776655443334444444322 22221 22345555555554322222223566778887665331
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
-+..|+.+|.+.+..+...|+.+|++..
T Consensus 95 -------NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 -------NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp -------THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred -------cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 2567899998889999999999999853
No 391
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=35.42 E-value=4.9e+02 Score=26.70 Aligned_cols=284 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHHhCCCCC--------CCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhc----CCChHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTP--------PPDFAKVAPALACLSRLLFHADPDVLADACWAISYLS----DGPNEKIQ 117 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~----~~~~~~~~ 117 (379)
+....++.-.+.+++++...-.| ........-++..+..-+.+.+..++..++..++.+. ....+..-
T Consensus 207 ~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi 286 (993)
T COG5234 207 QENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFI 286 (993)
T ss_pred ccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHH
Q ss_pred HHHhcCcHHHHHHhhcCC------ChHHHHHHHHHHHHhhcCCchhhHHHhhc---CcHHHHHHhhcCCC-hhhHHHHHH
Q psy664 118 AVIDAGVCRRLVELLMHD------QHKVVSAALRAVGNIVTGDDQQTQVILNC---SALMCLLHLIQSPK-ESIRKEACW 187 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~~------~~~i~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~-~~v~~~a~~ 187 (379)
.+++.-.--..+..|+.+ ++-+-..++..++-...+.-...+.++.. .++.+=.+...... ..+|..+++
T Consensus 287 ~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ala~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f 366 (993)
T COG5234 287 DIIELMTENMFLSPLENTCDIIITNELVWHGAILFFALAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCF 366 (993)
T ss_pred HHHHhcccccchhhhhCccceeecchHHHHHHHHHHHHhhccccchhhhhhhhheccccceeehheeeeccceeecccce
Q ss_pred HHHHhhcCChHHHHHHHhcCchHHHHH-HHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHH
Q psy664 188 AVSNITAGNRQQIQAVIDANIFPSLIE-ILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266 (379)
Q Consensus 188 ~l~nl~~~~~~~~~~~~~~~~i~~Li~-ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 266 (379)
.++.+..+......+-++.+++-.++. .+-+++-.+|+.|..+|...+-.+.+..-.. .++.+....+..=
T Consensus 367 ~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~--------~lIslIN~~sv~r 438 (993)
T COG5234 367 FVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGL--------SLISLINYVSVTR 438 (993)
T ss_pred eeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccch--------hhhhhccceecch
Q ss_pred HHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH-HHHhhcCCCHHHHHHHHHHHHHhcCCCcccccCCCCccc
Q psy664 267 IQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK-IEFLQSHENIEIYQKAFDIIEHYFGSEEEDTRVAPCVTH 345 (379)
Q Consensus 267 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~-l~~l~~~~~~~v~~~a~~il~~~~~~~~~~~~~~~~~~~ 345 (379)
..++-..+++.+...++... |..+ .+. |..=+.|-+++++....--|..|....-+-+-.-|++
T Consensus 439 ~s~csg~~~r~~~~~~k~~~--------CedV-----F~diLl~Nl~H~~~~~k~~~~y~l~~liK~~~~~p~yl~~I-- 503 (993)
T COG5234 439 ISNCSGDLCRKVAHFPKFRS--------CEDV-----FQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKELPIYLPPI-- 503 (993)
T ss_pred hhhcchHHHHHhcCccccch--------HHHH-----HHHHHHhhhhccchhhhhhccccHHHHhcCcccCchhhhHH--
Q ss_pred CCCCCCccccc
Q psy664 346 DASGAQEFTFA 356 (379)
Q Consensus 346 ~~~~~~~~~~~ 356 (379)
.-....+|.|+
T Consensus 504 l~k~~sdfi~~ 514 (993)
T COG5234 504 LDKLSSDFIFG 514 (993)
T ss_pred hhhCchhhhcc
No 392
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=35.39 E-value=12 Score=20.33 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=11.4
Q ss_pred HHHhcCCCcccccCCCC
Q psy664 326 IEHYFGSEEEDTRVAPC 342 (379)
Q Consensus 326 l~~~~~~~~~~~~~~~~ 342 (379)
+..+|+++++|....|+
T Consensus 10 l~SlySDeeeE~~~~~e 26 (30)
T PF03522_consen 10 LESLYSDEEEETETEPE 26 (30)
T ss_pred eeccccCcccccccchh
Confidence 45678888877655554
No 393
>KOG1788|consensus
Probab=35.16 E-value=4.1e+02 Score=28.86 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=50.5
Q ss_pred hHHHHHH-hhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHH
Q psy664 82 ALACLSR-LLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGN 149 (379)
Q Consensus 82 ~l~~L~~-lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~n 149 (379)
++..|-. +|+.++.+.+...+..+..|-...+++...+-+.--++.++.-+..-...++...+.+|-.
T Consensus 467 AvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEy 535 (2799)
T KOG1788|consen 467 AVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEY 535 (2799)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHH
Confidence 4444444 4667889999999998888887777777766666778888888887666777777776654
No 394
>KOG2199|consensus
Probab=34.83 E-value=2e+02 Score=26.96 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=56.2
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChH-HHHHHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhh
Q psy664 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNE-KIQAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIV 151 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~ 151 (379)
.-+.++..+.+-|++.|+.|...|+..+..++.+... .+..+....+...|..++. ...+.+.+..-..+.+.+
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999988876554 3344555678888888888 456777666555555554
No 395
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=34.50 E-value=1.5e+02 Score=23.65 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=74.8
Q ss_pred ChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCC--hHHHHHHHhcCcHHHHHHh-hcCCChHHHHHHHHHHHHh
Q psy664 75 DFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGP--NEKIQAVIDAGVCRRLVEL-LMHDQHKVVSAALRAVGNI 150 (379)
Q Consensus 75 ~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~--~~~~~~~~~~g~i~~L~~l-L~~~~~~i~~~al~~L~nl 150 (379)
+...+..++..+.++++. ....++.+.+..++-+..+- +...-.++..+.+-.++.. +.-.++++...=+..|..+
T Consensus 20 d~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsfLK~l 99 (149)
T PF09758_consen 20 DFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISFLKTL 99 (149)
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHHHHHH
Confidence 344567899999999887 45788888888777665431 2233445555666666665 4446778888877778777
Q ss_pred hcC-CchhhHHHhh--cC---cHHHHHHhhcCCChhhHHHHHHHHHHh
Q psy664 151 VTG-DDQQTQVILN--CS---ALMCLLHLIQSPKESIRKEACWAVSNI 192 (379)
Q Consensus 151 ~~~-~~~~~~~~~~--~~---~l~~L~~lL~~~~~~v~~~a~~~l~nl 192 (379)
+.. ++...+.+.+ .+ +...-+++..+++..+|.++-.++-|+
T Consensus 100 Slkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 100 SLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 743 2222222222 23 344455677888888888777666665
No 396
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=34.26 E-value=1.7e+02 Score=20.71 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh----cCCChHHHHHHHHH
Q psy664 72 PPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL----MHDQHKVVSAALRA 146 (379)
Q Consensus 72 ~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL----~~~~~~i~~~al~~ 146 (379)
+...+-....++..+..++. ..+.+++...+.++..+.....+ -+..| -+.++..+ .++++.+...|..+
T Consensus 8 El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----~i~SG-W~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 8 ELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE----NIKSG-WKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred cccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 44455567788888888865 45789999999999999855432 33455 44444444 34577788888777
Q ss_pred HHH
Q psy664 147 VGN 149 (379)
Q Consensus 147 L~n 149 (379)
+..
T Consensus 83 ~~~ 85 (86)
T PF09324_consen 83 VQL 85 (86)
T ss_pred Hhh
Confidence 653
No 397
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=34.19 E-value=3.6e+02 Score=24.54 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=89.3
Q ss_pred hhHHHHHHh-hcCC---ChHHHHHHHHHHHHhcCCChHHHHHHHhc-----------CcHHHHHHhhc------CCChHH
Q psy664 81 PALACLSRL-LFHA---DPDVLADACWAISYLSDGPNEKIQAVIDA-----------GVCRRLVELLM------HDQHKV 139 (379)
Q Consensus 81 ~~l~~L~~l-L~~~---d~~v~~~a~~aL~~l~~~~~~~~~~~~~~-----------g~i~~L~~lL~------~~~~~i 139 (379)
.++..|+.. |... .-++|..|+.++.....++++.+..+++. .....|+..|- +.++.-
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 344444443 3333 35788888888877776666666666543 01112444444 335555
Q ss_pred HHHHHHHHHHhhcCCchhhHHHhhc------------CcHHHHHHhhc-----CCChhhHHHHHHHHHHhhcCChHHHHH
Q psy664 140 VSAALRAVGNIVTGDDQQTQVILNC------------SALMCLLHLIQ-----SPKESIRKEACWAVSNITAGNRQQIQA 202 (379)
Q Consensus 140 ~~~al~~L~nl~~~~~~~~~~~~~~------------~~l~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~ 202 (379)
.+-|..+|..+..+++..++.+..- ..++.+..+|. +.++.++.--+..|.--..+++..+..
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 6789999999998887777655422 24556666653 334666666666666666788888888
Q ss_pred HHhc-CchHHHHHHHHh---CcHHHHHHHHHHHHHH
Q psy664 203 VIDA-NIFPSLIEILQK---AEFKTRKEAAWAITNA 234 (379)
Q Consensus 203 ~~~~-~~i~~Li~ll~~---~~~~v~~~a~~~l~nl 234 (379)
++.. ..++.|+..... .+.-++.-++..|+-+
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHH
Confidence 8876 478888886432 2455555555555543
No 398
>KOG0803|consensus
Probab=34.15 E-value=5.3e+02 Score=28.80 Aligned_cols=75 Identities=9% Similarity=0.172 Sum_probs=51.3
Q ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 209 FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 209 i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
+..+++-+...|+.+|..|...+.+++...+.+....+.. .....+.++..+.+..||...-..+..++....+.
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~-~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILP-EWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666799999999999999985444333222111 12334555667789999999999999998876554
No 399
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=33.98 E-value=2e+02 Score=26.36 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcC--ChHHHHHhhccCC---HHHHHHHHHHHHHHHHHcH
Q psy664 224 RKEAAWAITNATSGGTPDQIRYLIQQG--CIEPFCELLTLLD---AKIIQVALNGLENILKLGE 282 (379)
Q Consensus 224 ~~~a~~~l~nl~~~~~~~~~~~l~~~~--~i~~L~~lL~~~d---~~v~~~al~~L~~l~~~~~ 282 (379)
|-.|+.+++.+ .........+...+ ++..|++++..++ ..++..|+.+|..|.....
T Consensus 239 RllAi~~l~~~--~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 239 RLLAIANLVYI--HPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHhh--CCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 33344444443 34556666677666 9999999998643 4899999999999988443
No 400
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=33.95 E-value=3.1e+02 Score=23.77 Aligned_cols=71 Identities=21% Similarity=0.048 Sum_probs=44.6
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHH-hccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 258 LLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEE-CYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 258 lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~-~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
||.++|+.+.+.+..+..++....=.+-.. .......+.. ...-+.|..+.++.++.|+-.|.++++...-
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~---~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICV---NPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567789999998888888876653222100 1111122222 2235666778899999999999999996643
No 401
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.86 E-value=2e+02 Score=21.38 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHH
Q psy664 135 DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIE 214 (379)
Q Consensus 135 ~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ 214 (379)
+.+.+..-+.|++.|... .. .++..+.+.+....+.-+..++.++..++..............+.+.+.+
T Consensus 17 S~~~I~~lt~~a~~~~~~-----a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~ 86 (114)
T cd03562 17 SQPSIQTLTKLAIENRKH-----AK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLD 86 (114)
T ss_pred cHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 556677777787777531 11 34556667777777777888888888887654444444444444666666
Q ss_pred HHHhCcHHHHHHHHHHH
Q psy664 215 ILQKAEFKTRKEAAWAI 231 (379)
Q Consensus 215 ll~~~~~~v~~~a~~~l 231 (379)
.....+++++......+
T Consensus 87 ~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 87 AYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 66667777775444333
No 402
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=33.64 E-value=4.4e+02 Score=25.36 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCChHhHhhhHH-HHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc
Q psy664 55 MVRNSVWVLSNLCRGKTPPPDFAKVAPALA-CLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM 133 (379)
Q Consensus 55 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~-~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 133 (379)
.+..++.+|+.+++.-... ....+.. .|..+|++...--+.-++.++...+...........-..+.+.|...|.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~----~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPES----SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 3447888999888763111 1122333 6888888888777777777776665432211110001234677777777
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcH-----HHHHHhhcC-----CC----hhhHHHHHHHHHHhhc---CC
Q psy664 134 HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL-----MCLLHLIQS-----PK----ESIRKEACWAVSNITA---GN 196 (379)
Q Consensus 134 ~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l-----~~L~~lL~~-----~~----~~v~~~a~~~l~nl~~---~~ 196 (379)
.+....-......+..+-+........+.+.|.+ |.|....+- ++ ....+-+...+..+.. ..
T Consensus 179 ~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~ 258 (441)
T PF12054_consen 179 NPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPS 258 (441)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 5443333333344444443333444455555552 222222221 11 1111111112222211 11
Q ss_pred hHH--HHHHHhc-CchHHHHHH----HHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHH
Q psy664 197 RQQ--IQAVIDA-NIFPSLIEI----LQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQ 268 (379)
Q Consensus 197 ~~~--~~~~~~~-~~i~~Li~l----l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~ 268 (379)
... .+.+-+. .-+...+.. -..-+..|+..++.++..+ ..-++-.. -+|.+|++-++. ++..++.
T Consensus 259 ~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l--~~lP~KLn-----PiIrpLMdSIK~Een~~LQ~ 331 (441)
T PF12054_consen 259 QKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVAL--GGLPKKLN-----PIIRPLMDSIKREENELLQQ 331 (441)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCcc-----HHHHHHHHHhhccccHHHHH
Confidence 111 1111111 111111111 1223456666666666665 33333222 246677777765 5678999
Q ss_pred HHHHHHHHHHHHcH
Q psy664 269 VALNGLENILKLGE 282 (379)
Q Consensus 269 ~al~~L~~l~~~~~ 282 (379)
.+..+|..++....
T Consensus 332 rsA~slA~Li~~~~ 345 (441)
T PF12054_consen 332 RSAESLARLIQLCV 345 (441)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887654
No 403
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=33.56 E-value=4.4e+02 Score=25.35 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHhcCC-ChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHh
Q psy664 95 PDVLADACWAISYLSDG-PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHL 173 (379)
Q Consensus 95 ~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 173 (379)
...|..+..+|+.++.. +......+.+ +.|+..|+++...=+..|.-++...+.........-.-..+.+.|...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 35577888888887754 2222222221 268888888877667777777777765432221100012345667778
Q ss_pred hcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchH
Q psy664 174 IQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFP 210 (379)
Q Consensus 174 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~ 210 (379)
|..+......+....+..+-......+..+.+.|.++
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~ 213 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVP 213 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8766766777777777777666666677777777733
No 404
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.13 E-value=2e+02 Score=21.31 Aligned_cols=85 Identities=11% Similarity=0.096 Sum_probs=51.3
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q psy664 177 PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFC 256 (379)
Q Consensus 177 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~ 256 (379)
+.+.|..-..|++.|.. ... .++..+.+.+....+.-+-.+++.+-.++...... ..........+.+.
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~-~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRK-YKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccc-hHHHHHHHHHHHHH
Confidence 55788888888888862 111 34555666777777777888888887777432222 22233333355666
Q ss_pred HhhccCCHHHHHHHHH
Q psy664 257 ELLTLLDAKIIQVALN 272 (379)
Q Consensus 257 ~lL~~~d~~v~~~al~ 272 (379)
......++.++.....
T Consensus 86 ~~~~~~~~~~r~kl~r 101 (114)
T cd03562 86 DAYEKVDEKTRKKLER 101 (114)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 6666666666654433
No 405
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=32.69 E-value=2.1e+02 Score=21.24 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=48.2
Q ss_pred CchHHHHHHHHh----CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHHHHHHH
Q psy664 207 NIFPSLIEILQK----AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQVALNGLENILKL 280 (379)
Q Consensus 207 ~~i~~Li~ll~~----~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~ 280 (379)
|++..+-+.+.+ .+..-|+.+..++..++. -....+.. +.++++..|.+ +.++++..++.+...++..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 566666666665 467789999999999885 33333332 35666666654 4568999999998888876
Q ss_pred cH
Q psy664 281 GE 282 (379)
Q Consensus 281 ~~ 282 (379)
-+
T Consensus 85 L~ 86 (107)
T PF08064_consen 85 LD 86 (107)
T ss_pred CC
Confidence 44
No 406
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=31.36 E-value=1.6e+02 Score=24.27 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=48.5
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy664 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLI 247 (379)
Q Consensus 168 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~ 247 (379)
+.+...+.+++.-+++.++-++...... ..... .+++.+-.++.+.+..+++...|+|..+. ..+++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~~~~Vqkav~w~L~~~~-~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDEEYFVQKAVGWALREYG-KKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHH-hhCHHHHHHHH
Confidence 6777888888888888888777665433 01111 23444445556678899999999999987 44555444433
No 407
>KOG2676|consensus
Probab=31.23 E-value=68 Score=29.52 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh--cCCChhhHHHHHHHHHHhhcCChHHHH
Q psy664 143 ALRAVGNIVTGDDQQTQVILNCSALMCLLHLI--QSPKESIRKEACWAVSNITAGNRQQIQ 201 (379)
Q Consensus 143 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~ 201 (379)
..+.++++++..+...+.+.+.|+++.+++-. .+.+|-+++-...++.++...+.+..+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~ 436 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQK 436 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHH
Confidence 67799999998888888899999999887754 455699999999999999876655443
No 408
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=31.01 E-value=2.9e+02 Score=22.36 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=48.3
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
++++..+.++ +|..+..+.+.++.+......-..+.+ ..++|.+..+|.+..+.....++..|..+..
T Consensus 31 k~ai~~~~~~---~D~svlvD~L~vl~~~~~~~~~tLd~c--~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 31 KGAIEYAVRM---NDPSVLVDVLSVLNQSLKPEKWTLDLC--VDLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred HHHHHHHHhc---CCchHHHHHHHHHHHhcCcCcccHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4455555554 788888888888875554432222222 3578999999999999999999999988774
No 409
>KOG4231|consensus
Probab=30.76 E-value=1.4e+02 Score=28.98 Aligned_cols=68 Identities=26% Similarity=0.319 Sum_probs=48.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 126 RRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 126 ~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
..+-.+..+.++++++.|..++++++......+..+-+..+-..+++++..+.+.+-+.+..++.-+.
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 33444445689999999999999999876555544444455556777777777778777777776553
No 410
>KOG1924|consensus
Probab=30.48 E-value=6.4e+02 Score=26.25 Aligned_cols=94 Identities=11% Similarity=0.125 Sum_probs=55.2
Q ss_pred HHHHHH-HhcCCChHHHHHHHhcC--cHHHHHHhhcCC------ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHH
Q psy664 101 ACWAIS-YLSDGPNEKIQAVIDAG--VCRRLVELLMHD------QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLL 171 (379)
Q Consensus 101 a~~aL~-~l~~~~~~~~~~~~~~g--~i~~L~~lL~~~------~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 171 (379)
++..|. .|+.++-.+...+-..| .+..++.-|.+. +......+++||..+....-.....+-....+-.+.
T Consensus 161 CleslRVsL~~npVSwvn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla 240 (1102)
T KOG1924|consen 161 CLESLRVSLTSNPVSWVNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLA 240 (1102)
T ss_pred HHHHHhhhhcCCccHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccccceeeeecCCccHHHHH
Confidence 344443 56666666666555443 233333333332 344567788888777643322222233334466677
Q ss_pred HhhcCCChhhHHHHHHHHHHhhc
Q psy664 172 HLIQSPKESIRKEACWAVSNITA 194 (379)
Q Consensus 172 ~lL~~~~~~v~~~a~~~l~nl~~ 194 (379)
..++...+.++.+++.+++.+|-
T Consensus 241 ~aldpr~pnmm~dvvkllsalci 263 (1102)
T KOG1924|consen 241 RALDPREPNMMTDVVKLLSALCI 263 (1102)
T ss_pred HhcCccCccHHHHHHHHHHHHhe
Confidence 77777778899999999988875
No 411
>PTZ00479 RAP Superfamily; Provisional
Probab=29.60 E-value=5e+02 Score=24.73 Aligned_cols=111 Identities=7% Similarity=-0.007 Sum_probs=69.1
Q ss_pred CCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHH
Q psy664 39 NNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQ 117 (379)
Q Consensus 39 ~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~ 117 (379)
.|..+.++.+. .-.+.-.....|.++.+-.. .......+++.....|..-...-....+|+|+++-..+.....
T Consensus 82 ~~f~~Rilel~dtL~Pqqig~Ilyg~gKsr~~-----~~efy~~~~~~v~~~L~~fssh~L~~i~wALsrL~Ird~~fL~ 156 (435)
T PTZ00479 82 HGFTNRLLELSDTLTPQQIGYIFYGYGKSRFL-----NPEFYEKMLKFVQPLLPNFYSHSLMCIAWALNRVQIRDEAFLS 156 (435)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHhhhcCccHHHHHHHHHHhcCCCcHHHHH
Confidence 45566666666 45666666777777765433 3446677788888888766677778899999999877644333
Q ss_pred HHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
.+. ..++....+=...-...++.+++.+...+....+
T Consensus 157 ~~a-----k~vl~r~~~~r~~dl~k~~nslakLg~~~~~l~k 193 (435)
T PTZ00479 157 RFA-----KEVGEKFDDIRTTDLIKICNSLAKLGGYTNNLKK 193 (435)
T ss_pred HHH-----HHHHhhccccCchhHHHHHHHHHHhcCCcHHHHH
Confidence 322 3333333333444456677777777665544443
No 412
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=29.21 E-value=2.5e+02 Score=31.69 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=65.9
Q ss_pred HhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcH
Q psy664 88 RLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167 (379)
Q Consensus 88 ~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l 167 (379)
.++.+.++.++.-+......+-...+. ..+..++..|+..+-+.+..-...|+.+|..++...+...... ...+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l 515 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFL 515 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHH
Confidence 345677888887777666666544322 2334467778777766666556788999999986443322211 1222
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHH
Q psy664 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE 226 (379)
Q Consensus 168 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~ 226 (379)
..++..+.+-+..=.+....+++.++........ -+...+.-.+-+.|.+.+++.++.
T Consensus 516 ~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HGGGGGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCCcHHHHHH
Confidence 2233333333333334456666666532211111 122223333445666666666554
No 413
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=29.15 E-value=92 Score=24.58 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=27.4
Q ss_pred HHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 297 LIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 297 ~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
+..+...-+.+..++.+++.+||+.|...|-.|=.
T Consensus 12 l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 12 LYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33444456677899999999999999999987644
No 414
>KOG2312|consensus
Probab=28.24 E-value=14 Score=36.56 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc--CChHHHHHHHhcCchHHHH
Q psy664 136 QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA--GNRQQIQAVIDANIFPSLI 213 (379)
Q Consensus 136 ~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~Li 213 (379)
-..+...|+.+.+|++.-.... +.....+-.+-+-+.+.+..+...+..++.++|. +++..+...++......++
T Consensus 48 ws~~~Vqal~s~~nlaqpt~~e---~S~~~~L~t~t~Gi~S~drflimr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv 124 (847)
T KOG2312|consen 48 WSQMQVQALQSNANLAQPTSGE---SSLIKQLLTPTRGISSPDRFLIMRALEILPPLCGREGNPQVICQVLSNDAYGFIV 124 (847)
T ss_pred cchhhhHhhhhhcccCCcchhh---hhHHHHHhhhccCCCCCCceeEeeccccCcccccCCCCceeehhhhchHHHHHHH
Confidence 4467888999999999732211 1112334445555667777888889999999986 6777777888888888888
Q ss_pred HHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhh
Q psy664 214 EILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259 (379)
Q Consensus 214 ~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL 259 (379)
..+.-.|.-+......+|..+...|+.......--.+.+..|+.+.
T Consensus 125 ~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 125 QGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred hccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 7777666655555555555554444433322222235566666553
No 415
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=27.29 E-value=2.6e+02 Score=20.74 Aligned_cols=69 Identities=4% Similarity=-0.021 Sum_probs=49.2
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHh----h--ccCCHHHHHHHHHHHHH
Q psy664 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCEL----L--TLLDAKIIQVALNGLEN 276 (379)
Q Consensus 208 ~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~l----L--~~~d~~v~~~al~~L~~ 276 (379)
++..|.+-+.+.++.++.-|+..|-.++..++......+.....+..++.+ . ...+..|+..++..+..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 455666667778899999999999999877777777777776666666543 1 12356888888776654
No 416
>KOG2213|consensus
Probab=26.87 E-value=5.5e+02 Score=24.28 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=71.9
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc------------CCChhhHHHHHHHHHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ------------SPKESIRKEACWAVSN 191 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~------------~~~~~v~~~a~~~l~n 191 (379)
++..-+.+.++.+..+++.|++-|-.+|.++ .. . ...+.|.++|+ ..+..+|+.+...|..
T Consensus 62 a~da~~d~~ed~d~~ir~qaik~lp~fc~~d-~~-~-----rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~t 134 (460)
T KOG2213|consen 62 AIDAQLDLCEDDDVGIRRQAIKGLPLFCKGD-AL-S-----RVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRT 134 (460)
T ss_pred HHHhhhccccccchhhHHHHHhccchhccCc-hh-h-----hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 4555566677788889999999888888762 11 1 12334444443 2355666666655554
Q ss_pred -hhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC---CCHHHHHHHHHcCChHHHHHh--hccCCHH
Q psy664 192 -ITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG---GTPDQIRYLIQQGCIEPFCEL--LTLLDAK 265 (379)
Q Consensus 192 -l~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~---~~~~~~~~l~~~~~i~~L~~l--L~~~d~~ 265 (379)
+..-.++.+..-++..++..+...|.+-+-+--...+..|+++-+. ...+..+.+++. .+-+-++ +.-.|++
T Consensus 135 Kl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~--~e~~a~ldaf~~sD~d 212 (460)
T KOG2213|consen 135 KLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEE--QEGLADLDAFNVSDAD 212 (460)
T ss_pred HhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHH--HhhhhccCcccCCChH
Confidence 3333334444444445555555555543333222333344443322 234555555432 2233333 4455666
Q ss_pred HHHHHHHHH
Q psy664 266 IIQVALNGL 274 (379)
Q Consensus 266 v~~~al~~L 274 (379)
.+...+.++
T Consensus 213 ~VdRfisCl 221 (460)
T KOG2213|consen 213 YVDRFISCL 221 (460)
T ss_pred HHHHHHHHH
Confidence 555544443
No 417
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=26.26 E-value=3.3e+02 Score=22.98 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=64.2
Q ss_pred HHHHHHhhcCC-ChHHHHHHHHHH-HHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 83 LACLSRLLFHA-DPDVLADACWAI-SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 83 l~~L~~lL~~~-d~~v~~~a~~aL-~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
++.+..++... +.++....+..+ +.+....+ ...+.+.....+++.-.++.|+-+.-......+ ..
T Consensus 82 ~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~---------~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~--~~- 149 (208)
T cd07064 82 LPLLEELITTKSWWDTVDSLAKVVGGILLADYP---------EFEPVMDEWSTDENFWLRRTAILHQLKYKEKTD--TD- 149 (208)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHhHHHHhCCh---------hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccC--HH-
Confidence 55555555543 355555444332 33222221 124566677788888888888765433332211 11
Q ss_pred HhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy664 161 ILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA 206 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 206 (379)
-+...+..++.+++.-|++...|+|..++..+++.+..+++.
T Consensus 150 ----~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~ 191 (208)
T cd07064 150 ----LLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAA 191 (208)
T ss_pred ----HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 123445566677778899999999999999888877666544
No 418
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=25.83 E-value=2.2e+02 Score=19.26 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcH
Q psy664 100 DACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167 (379)
Q Consensus 100 ~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l 167 (379)
..+|+++.+-..++ +.+.+.+ .+...+...+..-++.....++|.++-+-.-.....+.+.+..++
T Consensus 3 ~il~~fa~LNy~P~-~~~~f~~-~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl 68 (71)
T PF06743_consen 3 SILLPFARLNYQPP-NAEEFFE-KLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFL 68 (71)
T ss_pred HHHHHHHhcCCCCC-CHHHHHH-HHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHH
Confidence 45788888887765 4444443 256666666677788888999999998776666666666554443
No 419
>KOG1791|consensus
Probab=25.04 E-value=6.7e+02 Score=28.42 Aligned_cols=205 Identities=12% Similarity=0.086 Sum_probs=116.7
Q ss_pred HHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC----ChhhHHHHHH---HHH
Q psy664 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP----KESIRKEACW---AVS 190 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~---~l~ 190 (379)
.+++.|..-.+..-+.+.++.++..|.+++.-...............-.+-++..+-++. ++.+-.-..- -.+
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 567778888888888899999999998887765543322112222222233334333332 2333222111 122
Q ss_pred HhhcCChHH----HH------HHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc-CCCHHHHHHHHHcCChHHHHHhh
Q psy664 191 NITAGNRQQ----IQ------AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS-GGTPDQIRYLIQQGCIEPFCELL 259 (379)
Q Consensus 191 nl~~~~~~~----~~------~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~l~~~~~i~~L~~lL 259 (379)
+++....+. +. ..++-.-+|..-+.+.+..++-+.+--|.+.=+.. -.+....+.+...+..+.++...
T Consensus 1514 ~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~ 1593 (1758)
T KOG1791|consen 1514 DILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFY 1593 (1758)
T ss_pred HHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhh
Confidence 333222121 11 22333456767777777766655555565543221 12334455566778888888888
Q ss_pred ccC--CHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC--HHHHHH-HHHHHHHhcCC
Q psy664 260 TLL--DAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN--IEIYQK-AFDIIEHYFGS 332 (379)
Q Consensus 260 ~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~--~~v~~~-a~~il~~~~~~ 332 (379)
.++ +..-+..++.+|++-++.... ...+++.+|....|.+++++.- +-..+. -..++.+++..
T Consensus 1594 sS~l~~~~S~~LIL~~L~~~Vk~p~~----------a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1594 SSPLASEESKRLILATLQKGVKFPFY----------AYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred cchhHHHHHHHHHHHHHHhcCCCcHH----------HHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHh
Confidence 763 455666777777776665433 2478999999999999998763 323332 44566666655
No 420
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=24.20 E-value=6.6e+02 Score=24.32 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHcCChHHHH-Hhhcc----------CCHHHHHHHHHHHHHHHHHcHH
Q psy664 220 EFKTRKEAAWAITNATSGG-----TPDQIRYLIQQGCIEPFC-ELLTL----------LDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 220 ~~~v~~~a~~~l~nl~~~~-----~~~~~~~l~~~~~i~~L~-~lL~~----------~d~~v~~~al~~L~~l~~~~~~ 283 (379)
..++-...+|+|+...+.+ +.+++..+.|. ++.+. +...+ ..+++....+.+|..++....+
T Consensus 323 k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~--LE~llyE~~~~~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~d 400 (459)
T PF14764_consen 323 KEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEA--LEALLYEVTQSRRDPSASRPSSQPRLMTVLMTALAKLASRSQD 400 (459)
T ss_pred hhHHHHHHHHHHhcccccccCCccCHHHHHHHHHH--HHHHHHHHhhccccccccCCCCchhHHHHHHHHHHHHHHhCHh
Confidence 4678889999999877533 24555554442 33322 22221 2346777778888888887766
Q ss_pred hhhhcCCcchHHHHHHHhccHHHHHHh----------hcCCCHHHHHHHHHHHH
Q psy664 284 EAKQTGSVNPYVVLIEECYGLDKIEFL----------QSHENIEIYQKAFDIIE 327 (379)
Q Consensus 284 ~~~~~~~~~~~~~~i~~~g~l~~l~~l----------~~~~~~~v~~~a~~il~ 327 (379)
.-. . ... ++.|+..+ ....++.|..+|...+.
T Consensus 401 l~p------R-v~l-----~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~ 442 (459)
T PF14764_consen 401 LIP------R-VSL-----CLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLN 442 (459)
T ss_pred hhH------H-HHH-----HHHHHHHhccCCccccccCcccHHHHHHHHHHHHH
Confidence 421 1 111 25666662 23446788889988875
No 421
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=23.73 E-value=3.7e+02 Score=21.23 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=21.0
Q ss_pred HhcCchHHHHHHHHh-CcHHHHHHHHHHHHHHhcCC
Q psy664 204 IDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~ 238 (379)
+-.|.+..=+.++.. ..+.-++++=|.++|++-..
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa 48 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAA 48 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH-
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhh
Confidence 334666655554433 24567889999999998433
No 422
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=23.38 E-value=3.2e+02 Score=20.36 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=46.6
Q ss_pred CchHHHHHHHHhC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--CCHHHHHHHHHHHHHHHHH
Q psy664 207 NIFPSLIEILQKA----EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQVALNGLENILKL 280 (379)
Q Consensus 207 ~~i~~Li~ll~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~ 280 (379)
|++..+.+.+.+. +..-|+.+..++..++.... ..+. .+.++++..|.+ +.++++..++.+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g-~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG-KHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 5666666666554 34558899999988874322 2222 235666666665 5678999999998888776
Q ss_pred cH
Q psy664 281 GE 282 (379)
Q Consensus 281 ~~ 282 (379)
-+
T Consensus 85 L~ 86 (107)
T smart00802 85 LK 86 (107)
T ss_pred CC
Confidence 44
No 423
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=23.32 E-value=4.2e+02 Score=27.77 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=36.5
Q ss_pred hcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 163 NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 163 ~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
+.++|..+.+-=.....--+..|...|+.+..+. -++.|+++|.+.|.++-..|+.+|.+.+
T Consensus 64 ka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~-----------~~~~l~~~~~~~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 64 KAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGY-----------NVHPLIDALDSQDANIAPIAAKALSHTL 125 (844)
T ss_pred HHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCC-----------CHHHHHHHHhCCCHHHHHHHHHHHhceE
Confidence 3344444333322223334567777777775432 2566777787777778888887777654
No 424
>KOG2029|consensus
Probab=23.28 E-value=4.6e+02 Score=26.30 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=49.2
Q ss_pred HHHhcCcHHHHHHh--hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHH
Q psy664 118 AVIDAGVCRRLVEL--LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACW 187 (379)
Q Consensus 118 ~~~~~g~i~~L~~l--L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 187 (379)
.+-+.|+...+..+ +.++...+.+..++.++|++ .+..........|.++.+....+.++ .+++.+..
T Consensus 286 ~l~~dg~~q~~~~~~e~~rd~~~v~~~l~rvlanms-~~~~~~~s~~~S~W~sl~s~~~t~~d-~l~~~~~s 355 (697)
T KOG2029|consen 286 GLWDDGGLQHLAVLQEFDRDGQVVMRALMRVLANMS-EDEKLALSDSRSGWVSLVSEMSTTPD-SLRERALS 355 (697)
T ss_pred HHHhcchHHHHHHHHHHhcCChhhhHHHHHHHHhhh-cccccchhhhhhhhHHHHHHHhcCch-hHHHHHHH
Confidence 34455666666555 55678889999999999999 56666677788899997777777765 66655543
No 425
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.66 E-value=3.4e+02 Score=20.38 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=42.6
Q ss_pred cHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHh-hcCCChhh-HHHHHHHHHHhhc
Q psy664 124 VCRRLVELLM-HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHL-IQSPKESI-RKEACWAVSNITA 194 (379)
Q Consensus 124 ~i~~L~~lL~-~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v-~~~a~~~l~nl~~ 194 (379)
++|.+...|. +..++.+..+..+++.++...+-.. ..+..+++. +.+....- .+.+..++..++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~------~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD------EVLNALMESILKNWTQETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH------HHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 5788888888 6788999999999999986543222 233333333 33333222 4778888888764
No 426
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=22.45 E-value=3e+02 Score=19.73 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCC--hHHHHHHHHHHHHh
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHAD--PDVLADACWAISYL 108 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~aL~~l 108 (379)
...++..|+.+|..+|+.-... -.-....+...+.+.+.+++ .....-|+.+|..+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~-~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSS-YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4578889999999999875332 22244577888888777544 56778888888877
No 427
>KOG1791|consensus
Probab=22.17 E-value=1.2e+03 Score=26.60 Aligned_cols=204 Identities=12% Similarity=0.101 Sum_probs=115.3
Q ss_pred hHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC----CChHHHHHHH---HHHH
Q psy664 76 FAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH----DQHKVVSAAL---RAVG 148 (379)
Q Consensus 76 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~i~~~al---~~L~ 148 (379)
..+..+++-.+...+.+.|+.++..++|++...-++-....+.....-.+-.++.+.++ +++++..-.. .-..
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 34556778888888899999999999999876655543311222222234444444443 2333322211 1223
Q ss_pred HhhcCCchh----------hHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc--CChHHHHHHHhcCchHHHHHHH
Q psy664 149 NIVTGDDQQ----------TQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA--GNRQQIQAVIDANIFPSLIEIL 216 (379)
Q Consensus 149 nl~~~~~~~----------~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~~i~~Li~ll 216 (379)
+++....+. ....++...+|.+-+++.+...+-+.+--|.+.-+.. .+...++.....+.+..++...
T Consensus 1514 ~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~ 1593 (1758)
T KOG1791|consen 1514 DILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFY 1593 (1758)
T ss_pred HHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhh
Confidence 333322111 1233455677888888877665555555666655433 3344566667778888777777
Q ss_pred HhC--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCC--HHHHHH-HHHHHHHHHHH
Q psy664 217 QKA--EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLD--AKIIQV-ALNGLENILKL 280 (379)
Q Consensus 217 ~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d--~~v~~~-al~~L~~l~~~ 280 (379)
.+. +...+.=...+|++.+. -.......+-..|+...+.+++.+.- +...+. ....+.++...
T Consensus 1594 sS~l~~~~S~~LIL~~L~~~Vk-~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1594 SSPLASEESKRLILATLQKGVK-FPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred cchhHHHHHHHHHHHHHHhcCC-CcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHh
Confidence 663 55566666677777542 22233334445788899999998742 334444 44445555443
No 428
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=22.08 E-value=3.3e+02 Score=21.75 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=41.9
Q ss_pred HhcCcHHHHHHhhcCC--------------ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC
Q psy664 120 IDAGVCRRLVELLMHD--------------QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS 176 (379)
Q Consensus 120 ~~~g~i~~L~~lL~~~--------------~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 176 (379)
.+.-+|.++-.+|... ...++..|+++|..++.......+......+++.|++.|+.
T Consensus 77 ~e~~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 77 VENYIIDRVTNLLSEPPKVDEGWAPYTPAEICTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 3345677777777542 24578899999999998877666766677888988888764
No 429
>KOG2022|consensus
Probab=22.04 E-value=4.3e+02 Score=27.77 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=68.5
Q ss_pred ChHHHHhcC------CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChH
Q psy664 41 ILYPLIDKP------KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNE 114 (379)
Q Consensus 41 ~i~~Ll~lL------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~ 114 (379)
.++.+++.. ..++.+.+.+...++.+|..-.+.+ ......+|.|++-|+ +.+...++...+..+|....+
T Consensus 505 ~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~ 580 (982)
T KOG2022|consen 505 WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPE 580 (982)
T ss_pred HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhh
Confidence 467777776 2377888888888888876543332 234578899999887 444455666668888876544
Q ss_pred HHHHHHhcCcHHHHHHhhcC--CChHHHHHHHHHHHHhhc
Q psy664 115 KIQAVIDAGVCRRLVELLMH--DQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 115 ~~~~~~~~g~i~~L~~lL~~--~~~~i~~~al~~L~nl~~ 152 (379)
...... .+++..+-..+.. -.+..+....+++|.+..
T Consensus 581 ~L~py~-d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls 619 (982)
T KOG2022|consen 581 SLDPYA-DQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLS 619 (982)
T ss_pred hCchHH-HHHHHHHHHHhcccccCchHHHHHHHHHHHHHH
Confidence 333222 2344444444443 255677888888888764
No 430
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=21.76 E-value=3.5e+02 Score=20.22 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc
Q psy664 220 EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL 261 (379)
Q Consensus 220 ~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 261 (379)
..++...+..+|..++.+-..+.-..+.+.++++.+..+|..
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 456677788888888744366666677788888888887753
No 431
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.66 E-value=4e+02 Score=20.90 Aligned_cols=72 Identities=8% Similarity=0.027 Sum_probs=49.6
Q ss_pred hHHHHHHHH-hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHH-HHHhhcc---CCHHHHHHHHHHHHHHHHH
Q psy664 209 FPSLIEILQ-KAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEP-FCELLTL---LDAKIIQVALNGLENILKL 280 (379)
Q Consensus 209 i~~Li~ll~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~-L~~lL~~---~d~~v~~~al~~L~~l~~~ 280 (379)
+..|.+-+. +.++.++..|+..+-.++.......-..+...+++.. |+.++.. .+..|+..++..+......
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 344444454 3578888888888877775555566666777788887 8888863 2347888888877766543
No 432
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=21.39 E-value=3.9e+02 Score=22.15 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=16.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 126 RRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 126 ~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
..+++..-..=+.++..|..++..+..
T Consensus 10 ~~llrqa~EKiDrvR~~A~~~l~~ll~ 36 (193)
T PF12612_consen 10 GGLLRQAAEKIDRVREVAGKCLQRLLH 36 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334443333445678888888887773
No 433
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=21.03 E-value=4.3e+02 Score=21.00 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy664 168 MCLLHLIQSPKESIRKEACWAVSNITAGN 196 (379)
Q Consensus 168 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 196 (379)
..+...|.++...-|..|+.-+..+...+
T Consensus 7 ~~~~~~L~S~k~keR~~al~~L~~il~~~ 35 (155)
T PF11640_consen 7 NSILRLLSSDKIKERNKALEDLRHILSSP 35 (155)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCc
Confidence 34666677777777777777777765544
No 434
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=20.90 E-value=3.8e+02 Score=21.38 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh
Q psy664 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218 (379)
Q Consensus 179 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~ 218 (379)
-.+|.+|...+..++.......+.......++.|+..|+.
T Consensus 108 ~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 108 CTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 3688999999999977666545555555789999988865
No 435
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.35 E-value=1.4e+02 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.1
Q ss_pred cCChHHHHHhhccCCHHHHHHHHHHHHH
Q psy664 249 QGCIEPFCELLTLLDAKIIQVALNGLEN 276 (379)
Q Consensus 249 ~~~i~~L~~lL~~~d~~v~~~al~~L~~ 276 (379)
..+-+.+..+|.++|+++++.|+.+|..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456678899999999999999888765
Done!