Query psy664
Match_columns 379
No_of_seqs 261 out of 2081
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 23:23:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.2E-53 4.1E-58 415.8 35.6 358 1-379 153-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 2.3E-53 7.8E-58 411.7 33.9 358 1-379 134-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 1.9E-42 6.7E-47 337.2 39.1 334 2-336 152-501 (528)
4 1wa5_B Importin alpha subunit; 100.0 1.1E-41 3.9E-46 331.9 38.2 341 2-342 165-523 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 9.7E-41 3.3E-45 318.5 36.5 335 2-336 99-448 (450)
6 3ul1_B Importin subunit alpha- 100.0 5.8E-37 2E-41 296.7 26.7 319 3-331 93-430 (510)
7 1xm9_A Plakophilin 1; armadill 100.0 3.7E-37 1.3E-41 293.8 23.3 316 3-334 37-452 (457)
8 3tpo_A Importin subunit alpha- 100.0 3.1E-36 1E-40 293.1 29.1 319 3-331 112-449 (529)
9 4b8j_A Importin subunit alpha- 100.0 4.5E-35 1.5E-39 285.2 31.5 320 2-332 109-444 (528)
10 1wa5_B Importin alpha subunit; 100.0 1.4E-34 4.8E-39 281.8 31.8 323 3-333 123-459 (530)
11 3now_A UNC-45 protein, SD10334 100.0 1.6E-35 5.5E-40 293.8 22.1 279 3-282 488-785 (810)
12 3now_A UNC-45 protein, SD10334 100.0 6.4E-35 2.2E-39 289.6 23.9 321 2-334 281-655 (810)
13 3nmz_A APC variant protein; pr 100.0 1.3E-34 4.5E-39 272.7 23.4 280 1-281 115-452 (458)
14 1jdh_A Beta-catenin; beta-cate 100.0 5.2E-33 1.8E-37 270.5 29.8 313 2-329 177-528 (529)
15 3nmw_A APC variant protein; AR 100.0 1.6E-33 5.6E-38 257.9 22.9 255 29-284 62-339 (354)
16 3nmz_A APC variant protein; pr 100.0 1.8E-33 6.1E-38 265.0 23.5 319 4-333 64-452 (458)
17 2z6h_A Catenin beta-1, beta-ca 100.0 2.7E-32 9.3E-37 271.6 30.2 318 2-334 174-550 (644)
18 2jdq_A Importin alpha-1 subuni 100.0 3.3E-32 1.1E-36 259.4 28.9 319 4-333 57-392 (450)
19 3l6x_A Catenin delta-1; cateni 100.0 1.5E-32 5.2E-37 264.2 25.1 318 2-334 82-479 (584)
20 2z6g_A B-catenin; FULL-length, 100.0 7.2E-31 2.5E-35 265.7 30.8 312 3-331 311-663 (780)
21 1xm9_A Plakophilin 1; armadill 100.0 1.9E-31 6.5E-36 254.4 22.1 308 11-333 3-408 (457)
22 4hxt_A De novo protein OR329; 100.0 4.3E-30 1.5E-34 225.6 26.2 243 40-283 2-245 (252)
23 3nmw_A APC variant protein; AR 100.0 2.6E-30 8.9E-35 236.6 23.8 272 52-334 45-337 (354)
24 1xqr_A HSPBP1 protein; armadil 100.0 4.6E-30 1.6E-34 229.0 23.3 233 95-334 54-290 (296)
25 4db8_A Armadillo-repeat protei 100.0 4.9E-30 1.7E-34 225.6 21.6 240 39-279 11-251 (252)
26 3l6x_A Catenin delta-1; cateni 100.0 3.7E-30 1.3E-34 247.6 22.3 313 7-333 45-434 (584)
27 4hxt_A De novo protein OR329; 100.0 9.7E-29 3.3E-33 216.9 28.9 244 81-335 2-245 (252)
28 4db8_A Armadillo-repeat protei 100.0 1.5E-28 5E-33 216.1 24.7 240 81-331 12-251 (252)
29 1jdh_A Beta-catenin; beta-cate 100.0 1.7E-27 5.8E-32 231.6 25.3 319 5-333 12-387 (529)
30 4db6_A Armadillo repeat protei 100.0 1.2E-26 4E-31 198.2 24.6 200 79-279 10-209 (210)
31 2z6h_A Catenin beta-1, beta-ca 100.0 4.8E-27 1.6E-31 233.8 25.3 321 4-334 8-385 (644)
32 4db6_A Armadillo repeat protei 99.9 2E-26 6.8E-31 196.8 21.1 199 37-235 9-208 (210)
33 2z6g_A B-catenin; FULL-length, 99.9 9.9E-27 3.4E-31 235.4 22.3 314 2-332 268-623 (780)
34 1xqr_A HSPBP1 protein; armadil 99.9 2.9E-24 9.9E-29 191.5 19.4 187 54-242 55-243 (296)
35 3tt9_A Plakophilin-2; cell adh 99.9 6.8E-22 2.3E-26 168.9 16.9 195 82-279 9-229 (233)
36 3opb_A SWI5-dependent HO expre 99.9 1.8E-21 6.2E-26 190.0 22.0 307 11-332 335-729 (778)
37 3tt9_A Plakophilin-2; cell adh 99.9 6.8E-22 2.3E-26 168.9 16.7 194 41-236 9-229 (233)
38 3opb_A SWI5-dependent HO expre 99.9 1.7E-22 5.9E-27 197.2 13.6 246 32-282 449-731 (778)
39 1oyz_A Hypothetical protein YI 99.6 1.2E-14 4E-19 129.3 17.5 254 8-327 21-278 (280)
40 3grl_A General vesicular trans 99.6 7.7E-14 2.6E-18 133.2 23.3 295 29-334 50-397 (651)
41 1oyz_A Hypothetical protein YI 99.6 1.8E-13 6.2E-18 121.5 23.9 229 36-330 19-249 (280)
42 3grl_A General vesicular trans 99.6 3.9E-13 1.3E-17 128.4 27.1 283 42-333 23-344 (651)
43 4fdd_A Transportin-1; heat rep 99.6 1.9E-14 6.6E-19 147.6 19.4 304 10-332 128-472 (852)
44 4fdd_A Transportin-1; heat rep 99.6 1.1E-14 3.7E-19 149.4 13.2 301 10-330 174-511 (852)
45 3ltj_A Alpharep-4; protein eng 99.6 4.9E-13 1.7E-17 112.6 20.6 183 40-278 14-197 (201)
46 3ltm_A Alpha-REP4; protein eng 99.6 5E-13 1.7E-17 113.5 20.6 189 38-282 17-206 (211)
47 1b3u_A Protein (protein phosph 99.5 3.9E-14 1.3E-18 138.9 13.6 293 9-330 280-586 (588)
48 1b3u_A Protein (protein phosph 99.5 1.4E-13 4.8E-18 134.9 16.9 298 10-333 242-550 (588)
49 3ltj_A Alpharep-4; protein eng 99.5 2.2E-12 7.5E-17 108.6 21.9 186 79-330 12-197 (201)
50 3ltm_A Alpha-REP4; protein eng 99.5 1.2E-12 4.3E-17 111.0 20.5 188 80-333 18-205 (211)
51 2vgl_B AP-2 complex subunit be 99.5 3.9E-13 1.3E-17 132.1 18.1 231 41-282 122-422 (591)
52 2vgl_B AP-2 complex subunit be 99.5 9.1E-12 3.1E-16 122.3 23.0 310 11-334 50-460 (591)
53 2bpt_A Importin beta-1 subunit 99.4 4.6E-12 1.6E-16 129.9 14.2 302 11-331 370-711 (861)
54 1ibr_B P95, importin beta-1 su 99.4 1.5E-11 5.2E-16 116.7 16.9 278 40-333 128-439 (462)
55 1w63_A Adapter-related protein 99.3 2E-11 6.7E-16 120.5 16.7 300 12-331 109-490 (618)
56 1w63_A Adapter-related protein 99.3 2E-10 6.9E-15 113.2 23.7 251 42-333 109-381 (618)
57 2bpt_A Importin beta-1 subunit 99.3 3E-11 1E-15 123.8 14.8 273 43-331 372-668 (861)
58 4gmo_A Putative uncharacterize 99.2 8.7E-11 3E-15 117.1 14.9 197 81-280 35-259 (684)
59 4gmo_A Putative uncharacterize 99.2 3.8E-11 1.3E-15 119.6 11.9 193 41-235 35-257 (684)
60 1ibr_B P95, importin beta-1 su 99.2 3.6E-11 1.2E-15 114.1 11.2 267 10-282 128-440 (462)
61 1qgr_A Protein (importin beta 99.2 8.1E-10 2.8E-14 113.4 21.8 307 10-332 128-480 (876)
62 1qgr_A Protein (importin beta 99.1 1.1E-09 3.9E-14 112.3 18.3 301 15-332 95-438 (876)
63 1u6g_C TIP120 protein, CAND1; 99.1 7.3E-10 2.5E-14 118.0 13.7 270 42-332 8-285 (1230)
64 3b2a_A TON_1937, putative unch 99.1 1.2E-08 4E-13 84.5 16.8 226 80-329 32-259 (265)
65 2vgl_A Adaptor protein complex 99.0 4.8E-08 1.7E-12 96.1 22.3 287 11-332 75-399 (621)
66 1u6g_C TIP120 protein, CAND1; 99.0 1.2E-09 4.1E-14 116.3 11.1 260 12-282 8-287 (1230)
67 2qk2_A LP04448P; mini spindles 98.9 1.1E-08 3.7E-13 88.5 13.3 183 44-236 19-205 (242)
68 2qk2_A LP04448P; mini spindles 98.9 2.2E-09 7.6E-14 92.9 8.5 192 80-282 14-208 (242)
69 3b2a_A TON_1937, putative unch 98.8 9.3E-08 3.2E-12 79.2 14.6 187 123-332 33-219 (265)
70 2db0_A 253AA long hypothetical 98.8 1.9E-06 6.4E-11 68.6 20.9 217 37-280 29-247 (253)
71 3tjz_B Coatomer subunit gamma; 98.8 1.5E-08 5E-13 91.6 10.0 237 43-326 107-348 (355)
72 2qk1_A Protein STU2; STU2P, XM 98.8 6.7E-08 2.3E-12 83.8 13.7 184 50-235 27-219 (249)
73 2db0_A 253AA long hypothetical 98.8 3.5E-06 1.2E-10 67.0 21.7 215 80-331 31-246 (253)
74 1te4_A Conserved protein MTH18 98.7 2.4E-09 8.1E-14 83.4 1.6 118 40-191 12-130 (131)
75 2qk1_A Protein STU2; STU2P, XM 98.7 8E-08 2.7E-12 83.3 11.4 197 84-282 19-223 (249)
76 2vgl_A Adaptor protein complex 98.7 2.4E-06 8.1E-11 84.1 21.8 255 41-333 75-360 (621)
77 1te4_A Conserved protein MTH18 98.6 5.4E-08 1.8E-12 75.5 7.2 119 8-150 10-131 (131)
78 4ady_A RPN2, 26S proteasome re 98.6 4.4E-06 1.5E-10 84.0 21.9 219 53-332 451-677 (963)
79 3dad_A FH1/FH2 domain-containi 98.6 1.4E-06 4.7E-11 76.8 16.0 191 125-321 120-326 (339)
80 3tjz_B Coatomer subunit gamma; 98.5 2.6E-05 8.8E-10 70.5 22.7 167 58-245 47-213 (355)
81 1ho8_A Vacuolar ATP synthase s 98.5 5.6E-05 1.9E-09 70.0 22.8 309 7-330 74-475 (480)
82 4ady_A RPN2, 26S proteasome re 98.4 1.7E-05 5.9E-10 79.8 20.6 99 125-239 579-679 (963)
83 3dad_A FH1/FH2 domain-containi 98.4 1.3E-05 4.6E-10 70.6 16.9 185 85-269 122-326 (339)
84 1ho8_A Vacuolar ATP synthase s 98.4 1.6E-05 5.4E-10 73.7 16.6 225 53-280 182-477 (480)
85 2iw3_A Elongation factor 3A; a 98.2 0.00016 5.5E-09 73.6 20.9 263 40-332 54-325 (986)
86 2x1g_F Cadmus; transport prote 98.0 0.00086 3E-08 69.5 21.8 258 55-331 437-722 (971)
87 1wa5_C Importin alpha RE-expor 97.9 0.00047 1.6E-08 71.4 19.0 252 54-330 376-669 (960)
88 2x19_B Importin-13; nuclear tr 97.8 0.0046 1.6E-07 64.0 24.8 259 57-332 425-715 (963)
89 2x1g_F Cadmus; transport prote 97.7 0.002 6.8E-08 66.8 19.9 210 52-281 366-617 (971)
90 2iw3_A Elongation factor 3A; a 97.7 0.0064 2.2E-07 62.0 22.3 227 40-282 95-327 (986)
91 1wa5_C Importin alpha RE-expor 97.7 0.0011 3.7E-08 68.8 17.2 176 52-235 471-669 (960)
92 4ffb_C Protein STU2; tubulin f 97.6 0.0035 1.2E-07 54.8 17.3 192 128-334 14-215 (278)
93 2of3_A ZYG-9; multifunctional 97.6 0.00082 2.8E-08 57.9 12.5 180 85-282 50-239 (266)
94 4ffb_C Protein STU2; tubulin f 97.6 0.002 7E-08 56.3 14.9 185 45-236 14-212 (278)
95 4hat_C Exportin-1; heat repeat 97.5 0.0015 5.2E-08 67.7 15.4 152 83-239 453-621 (1023)
96 1upk_A MO25 protein; transfera 97.5 0.015 5.1E-07 51.3 18.7 206 116-331 71-283 (341)
97 1upk_A MO25 protein; transfera 97.4 0.039 1.3E-06 48.6 20.8 227 31-260 69-311 (341)
98 2x19_B Importin-13; nuclear tr 97.4 0.0064 2.2E-07 62.9 18.8 220 52-280 462-715 (963)
99 3c2g_A SYS-1 protein; beta-cat 97.4 0.021 7.2E-07 50.3 17.9 198 79-279 228-473 (619)
100 2f31_A Diaphanous protein homo 97.2 0.017 5.9E-07 48.9 16.0 183 107-325 28-222 (233)
101 3c2g_A SYS-1 protein; beta-cat 97.2 0.063 2.1E-06 47.4 19.0 155 63-219 266-450 (619)
102 3m1i_C Exportin-1; heat repeat 97.1 0.018 6.1E-07 60.2 17.8 227 43-281 347-620 (1049)
103 3m1i_C Exportin-1; heat repeat 97.1 0.014 4.8E-07 61.0 16.9 177 56-239 430-621 (1049)
104 3oc3_A Helicase MOT1, MOT1; re 97.0 0.0032 1.1E-07 59.1 9.3 242 42-327 176-432 (800)
105 2fv2_A RCD1 required for cell 96.9 0.081 2.8E-06 44.6 16.4 184 94-280 14-225 (268)
106 2of3_A ZYG-9; multifunctional 96.8 0.049 1.7E-06 46.8 15.1 184 126-333 49-238 (266)
107 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0049 1.7E-07 57.9 9.1 189 53-275 242-432 (800)
108 3eg5_B Protein diaphanous homo 96.8 0.093 3.2E-06 47.9 17.4 185 101-322 87-285 (383)
109 4hat_C Exportin-1; heat repeat 96.7 0.022 7.6E-07 59.0 14.6 146 177-332 465-619 (1023)
110 2bnx_A Diaphanous protein homo 96.3 0.36 1.2E-05 44.0 18.6 179 108-322 33-223 (386)
111 3l9t_A Putative uncharacterize 96.3 0.093 3.2E-06 43.9 12.9 136 50-206 82-219 (240)
112 2fv2_A RCD1 required for cell 96.1 0.56 1.9E-05 39.6 18.7 191 138-332 16-225 (268)
113 3ebb_A Phospholipase A2-activa 95.9 0.73 2.5E-05 40.4 17.7 182 82-269 104-296 (304)
114 3l9t_A Putative uncharacterize 95.9 0.14 4.7E-06 42.8 12.2 147 80-248 70-218 (240)
115 3ibv_A Exportin-T; karyopherin 95.7 0.72 2.4E-05 47.7 19.3 276 39-333 530-872 (980)
116 1lrv_A LRV, leucine-rich repea 95.7 0.0064 2.2E-07 51.9 3.4 106 29-188 63-169 (244)
117 3gjx_A Exportin-1; transport, 95.7 1 3.6E-05 46.7 20.3 267 38-329 58-378 (1073)
118 1lsh_A Lipovitellin (LV-1N, LV 95.6 0.47 1.6E-05 49.4 17.8 176 31-233 344-540 (1056)
119 3gjx_A Exportin-1; transport, 95.6 0.3 1E-05 50.8 15.8 157 82-240 478-648 (1073)
120 3ebb_A Phospholipase A2-activa 94.9 0.11 3.8E-06 45.7 9.0 136 52-188 161-299 (304)
121 3ibv_A Exportin-T; karyopherin 94.9 2.5 8.5E-05 43.7 20.1 281 38-331 38-361 (980)
122 3u0r_A Apoptosis inhibitor 5; 94.8 0.37 1.3E-05 44.6 12.3 96 176-284 39-134 (507)
123 1lrv_A LRV, leucine-rich repea 94.7 0.018 6.3E-07 49.0 3.2 57 29-103 87-144 (244)
124 3u0r_A Apoptosis inhibitor 5; 94.5 0.44 1.5E-05 44.1 11.8 124 92-235 39-162 (507)
125 3a6p_A Exportin-5; exportin-5, 94.0 2.8 9.6E-05 44.3 18.8 276 40-332 45-381 (1204)
126 3eg5_B Protein diaphanous homo 93.2 2.5 8.6E-05 38.4 14.7 144 80-224 108-282 (383)
127 2f31_A Diaphanous protein homo 92.8 3 0.0001 34.9 13.7 131 94-225 67-217 (233)
128 1x5b_A Signal transducing adap 92.5 0.28 9.5E-06 38.8 6.3 76 252-336 54-130 (163)
129 1lsh_A Lipovitellin (LV-1N, LV 92.4 3.1 0.00011 43.3 15.8 158 53-240 409-580 (1056)
130 3ldz_A STAM-1, signal transduc 92.2 0.18 6.1E-06 38.8 4.7 76 252-336 44-119 (140)
131 3qml_C Protein SLS1, nucleotid 91.1 3.6 0.00012 35.7 12.1 135 137-279 42-189 (315)
132 2bnx_A Diaphanous protein homo 90.9 8.7 0.0003 34.8 15.4 132 94-226 71-222 (386)
133 3gs3_A Symplekin, LD45768P; he 90.7 3.6 0.00012 35.0 11.8 118 207-330 53-172 (257)
134 3o2t_A Symplekin; heat repeat, 90.5 8.1 0.00028 34.9 14.5 129 139-280 41-184 (386)
135 3o2t_A Symplekin; heat repeat, 90.2 4 0.00014 36.9 12.2 116 207-330 63-182 (386)
136 1vdy_A Hypothetical protein (R 90.0 1 3.6E-05 34.3 7.0 75 251-334 50-133 (140)
137 1juq_A ADP-ribosylation factor 89.9 1.3 4.5E-05 35.1 7.9 76 252-336 52-133 (171)
138 3qml_C Protein SLS1, nucleotid 89.7 9 0.00031 33.2 13.3 136 94-235 41-188 (315)
139 3a6p_A Exportin-5; exportin-5, 89.0 9.6 0.00033 40.3 15.9 209 52-281 26-278 (1204)
140 3g2s_A C-terminal fragment of 89.0 0.75 2.6E-05 35.6 5.7 76 252-336 50-131 (149)
141 1mhq_A ADP-ribosylation factor 88.7 1.4 4.7E-05 34.1 7.0 76 252-336 40-121 (148)
142 3gs3_A Symplekin, LD45768P; he 87.3 13 0.00043 31.6 16.1 106 41-151 54-172 (257)
143 3zyq_A Hepatocyte growth facto 84.6 1.3 4.4E-05 37.0 5.2 72 252-332 47-119 (226)
144 1dvp_A HRS, hepatocyte growth 82.9 3.1 0.00011 34.5 6.9 72 252-332 44-116 (220)
145 1elk_A Target of MYB1; superhe 81.3 2.6 8.8E-05 32.9 5.4 73 252-333 55-132 (157)
146 3g2s_A C-terminal fragment of 81.0 4.3 0.00015 31.3 6.5 74 208-281 49-128 (149)
147 3ldz_A STAM-1, signal transduc 78.9 16 0.00056 27.6 9.2 70 166-235 43-113 (140)
148 1mhq_A ADP-ribosylation factor 76.7 7.7 0.00026 29.8 6.8 72 208-279 39-116 (148)
149 1x5b_A Signal transducing adap 75.9 7.4 0.00025 30.5 6.6 94 91-193 29-124 (163)
150 1vsy_5 Proteasome activator BL 75.3 45 0.0016 34.3 13.9 193 75-282 127-368 (997)
151 1juq_A ADP-ribosylation factor 72.6 8 0.00027 30.5 6.1 72 208-279 51-128 (171)
152 2npp_B PP2A, B subunit, serine 70.5 66 0.0023 29.6 13.9 230 34-284 156-404 (449)
153 3rru_A TOM1L1 protein; structu 65.9 12 0.00039 29.0 5.5 77 252-337 55-136 (152)
154 3fga_B Serine/threonine-protei 65.5 67 0.0023 29.1 11.2 228 35-284 124-371 (403)
155 3fga_B Serine/threonine-protei 65.5 79 0.0027 28.6 17.6 231 79-333 127-368 (403)
156 1vsy_5 Proteasome activator BL 64.1 2.9 0.0001 43.0 2.3 189 124-332 761-967 (997)
157 3gae_A Protein DOA1; UFD3, CDC 62.6 10 0.00035 32.1 5.1 101 132-235 99-216 (253)
158 2b6c_A Hypothetical protein EF 61.3 64 0.0022 26.3 9.7 133 50-205 66-199 (220)
159 3pst_A Protein DOA1; protein d 60.8 32 0.0011 31.4 8.2 101 132-235 271-388 (425)
160 2jak_A Serine/threonine-protei 57.3 53 0.0018 29.6 9.0 75 79-154 172-247 (392)
161 2npp_B PP2A, B subunit, serine 55.8 1.3E+02 0.0043 27.8 17.6 257 56-333 134-401 (449)
162 3l3f_X Protein DOA1, DOA1/UFD3 55.7 33 0.0011 30.7 7.3 101 132-235 208-325 (362)
163 3zyq_A Hepatocyte growth facto 52.8 27 0.00091 28.9 5.9 93 92-193 23-117 (226)
164 2xpp_A IWS1, ECU08_0440; trans 52.7 70 0.0024 24.3 7.7 74 243-330 54-135 (145)
165 3gae_A Protein DOA1; UFD3, CDC 52.5 1E+02 0.0035 25.8 10.8 143 127-282 60-220 (253)
166 3l3f_X Protein DOA1, DOA1/UFD3 51.0 57 0.002 29.1 8.1 133 140-283 180-330 (362)
167 3pst_A Protein DOA1; protein d 50.4 1.5E+02 0.0051 27.0 11.4 107 89-198 270-393 (425)
168 1dvp_A HRS, hepatocyte growth 49.6 28 0.00095 28.6 5.6 93 91-192 19-113 (220)
169 1vdy_A Hypothetical protein (R 48.4 43 0.0015 25.3 5.9 70 207-278 49-129 (140)
170 1elk_A Target of MYB1; superhe 45.0 54 0.0018 25.2 6.2 94 91-193 30-129 (157)
171 2xpp_A IWS1, ECU08_0440; trans 42.3 1.1E+02 0.0038 23.2 8.2 74 115-192 53-134 (145)
172 1t06_A Hypothetical protein; s 39.4 83 0.0028 26.0 7.0 76 125-205 110-191 (235)
173 3jxy_A Alkylpurine DNA glycosy 37.6 65 0.0022 26.6 6.0 77 124-207 132-208 (232)
174 3nfq_A Transcription factor IW 32.7 1.8E+02 0.006 22.7 7.7 72 244-329 70-149 (170)
175 2b6c_A Hypothetical protein EF 30.6 2.1E+02 0.0073 23.1 14.1 139 84-248 58-199 (220)
176 1vsy_4 Proteasome activator BL 29.6 3.9E+02 0.013 26.6 11.1 111 80-193 338-454 (799)
177 1wjt_A Transcription elongatio 28.9 67 0.0023 22.8 4.0 38 295-332 47-85 (103)
178 3jxy_A Alkylpurine DNA glycosy 27.2 78 0.0027 26.0 4.8 139 85-249 65-207 (232)
179 1sz9_A PCF11 protein; RNA poly 27.1 2E+02 0.0068 21.6 7.9 89 135-233 23-111 (144)
180 4atg_A TAF6; transcription, TF 27.0 2.4E+02 0.0083 22.5 8.6 126 40-174 40-177 (196)
181 4fu3_A Regulation of nuclear P 26.4 1.4E+02 0.0047 21.9 5.7 59 125-193 9-67 (135)
182 1vsy_4 Proteasome activator BL 26.1 4.9E+02 0.017 26.0 11.0 119 29-152 329-455 (799)
183 4atg_A TAF6; transcription, TF 25.7 1.8E+02 0.0061 23.3 6.5 130 80-218 39-179 (196)
184 2jak_A Serine/threonine-protei 25.2 3.7E+02 0.013 24.1 13.2 79 117-196 168-247 (392)
185 3ut4_A CTHE_2751, putative unc 22.4 2E+02 0.0068 21.4 5.6 96 207-332 31-131 (134)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.2e-53 Score=415.75 Aligned_cols=358 Identities=47% Similarity=0.797 Sum_probs=308.4
Q ss_pred ChhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCC-----hhHHHHHHHH
Q psy664 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNR-----LSMVRNSVWV 62 (379)
Q Consensus 1 ~~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~-----~~~~~~a~~~ 62 (379)
++++.+++.|++|.|+++|.+++.++++ ++.+|+.+++.|++++|+.+| ..+ ..++++++|+
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 3688999999999999999999998887 689999999999999999999 332 3578899999
Q ss_pred HHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHH
Q psy664 63 LSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSA 142 (379)
Q Consensus 63 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~ 142 (379)
++++|+++.+........+++|.|++++.+++++++..++|+|++++.++++..+.+.+.|+++.|+.+|.+++..++.+
T Consensus 233 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 312 (529)
T 3tpo_A 233 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 312 (529)
T ss_dssp HHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence 99999998888888888999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHH
Q psy664 143 ALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222 (379)
Q Consensus 143 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~ 222 (379)
++++|+|++.+++..+..+++.|+++.|..+|.++++.++++|+|+|+|++.+++++.+.+++.|++|.|+.++.+++++
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhc
Q psy664 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECY 302 (379)
Q Consensus 223 v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g 302 (379)
++++|+|+|+|++..++.+++.++++.|++++|+++|.+.|++++..++++|.+|+..++.... .+.++..|+++|
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~----~~~~~~~iee~g 468 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE----TEKLSIMIEECG 468 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccC----hHHHHHHHHHCC
Confidence 9999999999999888999999999999999999999999999999999999999998875433 677899999999
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCcc-cccCCCCcccCCCCCCcccccCCCCCCCCCCcccccCCCCCCCC
Q psy664 303 GLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE-DTRVAPCVTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379 (379)
Q Consensus 303 ~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (379)
|+++|+.|++|+|++||++|..||++||+++|+ ++++.|+ .+.++|+|+.++ .|.|+|+|
T Consensus 469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~f~f 529 (529)
T 3tpo_A 469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPE-----TTSEGFAFQVQD------------GAPGTFNF 529 (529)
T ss_dssp CHHHHTGGGGCSSHHHHHHHHHHHHHHC--------------------------------------------------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCC-----CCCcccccCCCC------------CCCCCCCC
Confidence 999999999999999999999999999997654 4578887 456678897642 34578998
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.3e-53 Score=411.66 Aligned_cols=358 Identities=47% Similarity=0.798 Sum_probs=308.6
Q ss_pred ChhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCC-----hhHHHHHHHH
Q psy664 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNR-----LSMVRNSVWV 62 (379)
Q Consensus 1 ~~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~-----~~~~~~a~~~ 62 (379)
++++.+++.|++|.|+++|++++.++++ ++.+|+.+++.|++++|+.++ +.+ ..++++++|+
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 4788999999999999999999998888 688999999999999999999 332 3578899999
Q ss_pred HHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHH
Q psy664 63 LSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSA 142 (379)
Q Consensus 63 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~ 142 (379)
++++|++..+........+++|.|++++.+++++++..++|+|++|+.++++..+.+.+.|+++.|+.+|.+++..++.+
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 99999998788888888999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHH
Q psy664 143 ALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222 (379)
Q Consensus 143 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~ 222 (379)
++++|+|++.+++..+..+++.|+++.|..+|.+++..+++.|+|+|+|++++++++++.+.+.|+++.|+.++.+++++
T Consensus 294 al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 373 (510)
T 3ul1_B 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhc
Q psy664 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECY 302 (379)
Q Consensus 223 v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g 302 (379)
++++|+|+|+|++..++.+++.++++.|++++|+++|.+.|++++..++++|.+|+..++.... .+.++.+|+++|
T Consensus 374 v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~----~~~~~~~iee~g 449 (510)
T 3ul1_B 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE----TEKLSIMIEECG 449 (510)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccc----hHHHHHHHHHcC
Confidence 9999999999999888999999999999999999999999999999999999999998876533 667899999999
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCccc-ccCCCCcccCCCCCCcccccCCCCCCCCCCcccccCCCCCCCC
Q psy664 303 GLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEED-TRVAPCVTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379 (379)
Q Consensus 303 ~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (379)
|+++|+.|++|+|++||++|..||++||+++|+| +++.|+ .+.++|+|+.+ +.|.++|+|
T Consensus 450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~~~ 510 (510)
T 3ul1_B 450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPE-----TTSEGFAFQVQ------------DGAPGTFNF 510 (510)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCC-----CCccccccCCC------------CCCCCCCCC
Confidence 9999999999999999999999999999986544 578887 45667888764 244578998
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.9e-42 Score=337.21 Aligned_cols=334 Identities=57% Similarity=0.959 Sum_probs=306.2
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC--CCChhHHHHHHHHHHHHh
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP--KNRLSMVRNSVWVLSNLC 67 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~ 67 (379)
++..+++.|++|.|+++|.+++..+++ ++.+|+.++..|++++|+.+| +.+..+++.++|+|.+||
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 567889999999999999998888877 578899999999999999999 567899999999999999
Q ss_pred CCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 68 RGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
... +........+++|.|++++.+++++++..++|+|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus 232 ~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 232 RGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp CSS-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCC-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 987 6667777899999999999999999999999999999999888888899999999999999999999999999999
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHH
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSP-KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE 226 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~ 226 (379)
+|++.+++...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.++++.++.+++.|+++.|+.++.+++++++.+
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 999999989999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhc-CCcchHHHHHHHhccHH
Q psy664 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQT-GSVNPYVVLIEECYGLD 305 (379)
Q Consensus 227 a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~-~~~~~~~~~i~~~g~l~ 305 (379)
|+|+|+|++..++++...++++.|+++.|+.+|.+++++++..++++|.+++..++...... ...++++..++++|+++
T Consensus 391 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 470 (528)
T 4b8j_A 391 AAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLE 470 (528)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHH
Confidence 99999999977789999999999999999999999999999999999999999887643211 23677999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCccc
Q psy664 306 KIEFLQSHENIEIYQKAFDIIEHYFGSEEED 336 (379)
Q Consensus 306 ~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~ 336 (379)
+|..+++|++++++++|..+|++||+.++++
T Consensus 471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~ 501 (528)
T 4b8j_A 471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDD 501 (528)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence 9999999999999999999999999986654
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.1e-41 Score=331.92 Aligned_cols=341 Identities=52% Similarity=0.872 Sum_probs=306.7
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
+++.+++.|++|.|+++|++++..+++ ++.+|+.++..|+++.|+.++ +.+..+++.++|+|++||.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 456788999999999999998888877 478899999999999999999 8888999999999999999
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVG 148 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~ 148 (379)
...+........+++|.|+.++.+++++++..++|+|++|+.+.++..+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 87666777788999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHH
Q psy664 149 NIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAA 228 (379)
Q Consensus 149 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~ 228 (379)
|++.+++...+.+++.|+++.|+.+|.++++.+++.|+|+|+|++.++++.++.+++.|+++.|+.++.+++++++..|+
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 404 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 99999888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCH--HHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhh-cCCcchHHHHHHHhccHH
Q psy664 229 WAITNATSGGTP--DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ-TGSVNPYVVLIEECYGLD 305 (379)
Q Consensus 229 ~~l~nl~~~~~~--~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~-~~~~~~~~~~i~~~g~l~ 305 (379)
|+|+|++..+++ +....+++.|+++.|+.++.+++++++..++++|.+++..++..... ....++++..+.++||++
T Consensus 405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 484 (530)
T 1wa5_B 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGME 484 (530)
T ss_dssp HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHH
Confidence 999999876666 78889999999999999999999999999999999999987754221 122578999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCccc--ccCCCC
Q psy664 306 KIEFLQSHENIEIYQKAFDIIEHYFGSEEED--TRVAPC 342 (379)
Q Consensus 306 ~l~~l~~~~~~~v~~~a~~il~~~~~~~~~~--~~~~~~ 342 (379)
+|..|++|++++|+++|..+|++||..+++| +++.|+
T Consensus 485 ~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~~~~~~~ 523 (530)
T 1wa5_B 485 KIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQ 523 (530)
T ss_dssp HHHGGGGCSCHHHHHHHHHHHHHHSSSCC----------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCccccccccccCCC
Confidence 9999999999999999999999999987654 356665
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=9.7e-41 Score=318.50 Aligned_cols=335 Identities=74% Similarity=1.173 Sum_probs=302.2
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-C-CChhHHHHHHHHHHHHh
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-K-NRLSMVRNSVWVLSNLC 67 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~-~~~~~~~~a~~~L~~l~ 67 (379)
+++.+++.|++|.|+++|+++++.+++ ++.+|+.+++.|+++.|++++ + .+..+++.++|+|++++
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 456678899999999999998888877 567899999999999999999 4 67899999999999999
Q ss_pred CCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 68 RGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
....+........+++|.|++++.+++++++..++|+|++++.+.++....+.+.|+++.|+.+|.++++.++..|+++|
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence 87644445555689999999999999999999999999999998878888888999999999999999999999999999
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHH
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a 227 (379)
++++.+.+...+.+.+.|+++.|.+++.++++.+++.|+|+|+|++.++++..+.+++.|+++.++.++.+++++++++|
T Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 259 GNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99999988888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhh-cCCcchHHHHHHHhccHHH
Q psy664 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ-TGSVNPYVVLIEECYGLDK 306 (379)
Q Consensus 228 ~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~-~~~~~~~~~~i~~~g~l~~ 306 (379)
+|+|+|++..+++++.+.+++.|+++.|+.++.+++++++..++++|.+++..++...+. ....++|+..+.+.||+++
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 418 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDK 418 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHH
Confidence 999999986668888888999999999999999999999999999999999977654221 1235689999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCccc
Q psy664 307 IEFLQSHENIEIYQKAFDIIEHYFGSEEED 336 (379)
Q Consensus 307 l~~l~~~~~~~v~~~a~~il~~~~~~~~~~ 336 (379)
|..+++|++++++++|..+|++||++++++
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999999877654
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.8e-37 Score=296.72 Aligned_cols=319 Identities=23% Similarity=0.331 Sum_probs=285.7
Q ss_pred hhhhhhCCChHHHHhhcCCCC-CCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 3 TRMVIDAGAVPVFIQLLLSPH-EDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~~-~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
.+.+++.|+||.|+++|++.+ +.++. +++.+..+++.|++|.|+++| +++..+++.|+|+|+||+.
T Consensus 93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 468999999999999998654 56665 678889999999999999999 8899999999999999998
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcCCC-----hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFHAD-----PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAA 143 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~~d-----~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a 143 (379)
+....+..+...|+++.|+.++...+ ..++..++|++++++.+...........++++.|+.++.++++.++..|
T Consensus 173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 76455666677899999999998765 3567899999999998765444445556899999999999999999999
Q ss_pred HHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHH
Q psy664 144 LRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223 (379)
Q Consensus 144 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v 223 (379)
+|+|++++.+++...+.+.+.|+++.|+.+|.+.+..++..|+++++|++.+++...+.+++.|+++.|+.++.+.++.+
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v 332 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence 99999999988888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhcc
Q psy664 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYG 303 (379)
Q Consensus 224 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~ 303 (379)
+++|+|+|+|++ .++.++...+.+.|+++.|+.+|.+.+.++++.++++|.|++..+... .+..+.+.|+
T Consensus 333 ~~~A~~aL~nl~-a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~---------~~~~L~~~g~ 402 (510)
T 3ul1_B 333 QKEATWTMSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE---------QIVYLVHCGI 402 (510)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHTTC
T ss_pred HHHHHHHHHHHH-cCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHH---------HHHHHHHCCC
Confidence 999999999997 788899999999999999999999999999999999999999865432 3467889999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 304 LDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 304 l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
++.|..++.++++++...+...|.+++.
T Consensus 403 i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 403 IEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.7e-37 Score=293.81 Aligned_cols=316 Identities=16% Similarity=0.189 Sum_probs=265.4
Q ss_pred hhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC--CCChhHHHHHHHHHHHHhC
Q psy664 3 TRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP--KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~ 68 (379)
+..+++.|++|.|+++|++++..++. ++++|..+++.|++|+|+++| +.+.+++++++|+|.||+.
T Consensus 37 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 37 KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence 45899999999999999998887776 489999999999999999999 5578999999999999999
Q ss_pred CCCCCCChHhHhhhHHHHHHhh--------cC--------CChHHHHHHHHHHHHhcCCChHHHHHHHhc-CcHHHHHHh
Q psy664 69 GKTPPPDFAKVAPALACLSRLL--------FH--------ADPDVLADACWAISYLSDGPNEKIQAVIDA-GVCRRLVEL 131 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL--------~~--------~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~L~~l 131 (379)
.+ ..+..+.. |++|.|+++| .+ .+++++..|+|+|+||+.+ ++.++.+.+. |+++.|+.+
T Consensus 117 ~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~l 193 (457)
T 1xm9_A 117 TD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAY 193 (457)
T ss_dssp SS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHH
T ss_pred CH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHH
Confidence 83 55555556 9999999999 32 3567788999999999988 6788989987 999999999
Q ss_pred hcC------CChHHHHHHHHHHHHhhcC--------------------------------------------------Cc
Q psy664 132 LMH------DQHKVVSAALRAVGNIVTG--------------------------------------------------DD 155 (379)
Q Consensus 132 L~~------~~~~i~~~al~~L~nl~~~--------------------------------------------------~~ 155 (379)
|++ .+..+++.|+++|.|+++. .+
T Consensus 194 L~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (457)
T 1xm9_A 194 VQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273 (457)
T ss_dssp HHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSC
T ss_pred HHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCc
Confidence 986 4667889999999998731 12
Q ss_pred hhhHHHhhcCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChHH---H-HHHH-hcCchHHHHHHHHhCcHHHHHHHHH
Q psy664 156 QQTQVILNCSALMCLLHLIQSP-KESIRKEACWAVSNITAGNRQQ---I-QAVI-DANIFPSLIEILQKAEFKTRKEAAW 229 (379)
Q Consensus 156 ~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~---~-~~~~-~~~~i~~Li~ll~~~~~~v~~~a~~ 229 (379)
...+.+.+.|+++.++.+|.+. ++.+++.|+|+|+|+++++... + +.++ +.|++|.|+++|.+++.+++++|+|
T Consensus 274 ~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~ 353 (457)
T 1xm9_A 274 KGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGAS 353 (457)
T ss_dssp CGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHH
Confidence 2334566778899999999755 5899999999999999876442 3 4444 6799999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCC------HHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhcc
Q psy664 230 AITNATSGGTPDQIRYLIQQGCIEPFCELLTLLD------AKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYG 303 (379)
Q Consensus 230 ~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~ 303 (379)
+|.|++. +. +...++..|++++|+++|...+ .+++..++++|.+++.... .++..+.++|+
T Consensus 354 aL~nls~--~~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~----------~~~~~i~~~g~ 420 (457)
T 1xm9_A 354 LLSNMSR--HP-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP----------QLAKQYFSSSM 420 (457)
T ss_dssp HHHHHHT--SG-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT----------HHHHHHCCHHH
T ss_pred HHHHHhc--CH-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH----------HHHHHHHHcCC
Confidence 9999974 32 4456667789999999998864 3688899999999986543 35678999999
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCc
Q psy664 304 LDKIEFLQSHE-NIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 304 l~~l~~l~~~~-~~~v~~~a~~il~~~~~~~~ 334 (379)
+++|.+|+.|+ +++++++|..+|.+||...+
T Consensus 421 l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 421 LNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999999 99999999999999998654
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.1e-36 Score=293.14 Aligned_cols=319 Identities=23% Similarity=0.333 Sum_probs=285.9
Q ss_pred hhhhhhCCChHHHHhhcCCCC-CCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 3 TRMVIDAGAVPVFIQLLLSPH-EDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~~-~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
.+.+++.|++|.|+++|++.+ +.++. +++.+..+++.|++|.|+.+| +++..++..|+|+|+||+.
T Consensus 112 i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 112 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 467899999999999997654 55655 567788999999999999999 8899999999999999998
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcCCC-----hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFHAD-----PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAA 143 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~~d-----~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~a 143 (379)
........+...|+++.|+.+|...+ ..+...++|++++++.+...........+++|.|+.++.++++.++..|
T Consensus 192 ~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a 271 (529)
T 3tpo_A 192 AGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 271 (529)
T ss_dssp TCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHH
Confidence 76555666777899999999998655 3567899999999998765544545556899999999999999999999
Q ss_pred HHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHH
Q psy664 144 LRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223 (379)
Q Consensus 144 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v 223 (379)
+|+|++++.+.+...+.+.+.|+++.|+.+|.+++..++..|+++++|++.+++...+.+++.|+++.|+.++.+.++.+
T Consensus 272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence 99999999988888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhcc
Q psy664 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYG 303 (379)
Q Consensus 224 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~ 303 (379)
+++|+|+|+|++ .++..+...+.+.|+++.|+.+|.+++.+++..|+|+|.|++..+... ....+.+.|+
T Consensus 352 ~~~a~~aL~nl~-~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~---------~~~~l~~~g~ 421 (529)
T 3tpo_A 352 QKEATWTMSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE---------QIVYLVHCGI 421 (529)
T ss_dssp HHHHHHHHHHHH-TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHTTC
T ss_pred HHHHHHHHHHHh-cccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH---------HHHHHHHCcC
Confidence 999999999998 788899999999999999999999999999999999999999865332 3467889999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 304 LDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 304 l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
++.|..|+.++++++...+...|.+++.
T Consensus 422 i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 422 IEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988864
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.5e-35 Score=285.21 Aligned_cols=320 Identities=23% Similarity=0.330 Sum_probs=286.2
Q ss_pred hhhhhhhCCChHHHHhhcCCCC-CCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHh
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPH-EDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLC 67 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~-~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~ 67 (379)
.++.+++.|++|.|+++|++++ +.++. +++.+..+++.|+++.|+.+| +.+..++..|+|+|.+++
T Consensus 109 ~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 109 PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3577899999999999999876 66666 478899999999999999999 888999999999999999
Q ss_pred CCCCCCCChHhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHH
Q psy664 68 RGKTPPPDFAKVAPALACLSRLL-FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRA 146 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~ 146 (379)
.........+...|++|.|+.+| .+.++.++..++|+|++|+.+.+.. ......|+++.|+.+|.++++.++..|+++
T Consensus 189 ~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a 267 (528)
T 4b8j_A 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWA 267 (528)
T ss_dssp HTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 87544455556679999999999 5778999999999999999875332 234458999999999999999999999999
Q ss_pred HHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHH
Q psy664 147 VGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRK 225 (379)
Q Consensus 147 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~ 225 (379)
|++++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+++.|+++.|+.++.+. ++.+++
T Consensus 268 L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~ 347 (528)
T 4b8j_A 268 LSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKK 347 (528)
T ss_dssp HHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHH
Confidence 9999998888888899999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHH
Q psy664 226 EAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLD 305 (379)
Q Consensus 226 ~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~ 305 (379)
+|+|+|+|++ .++.+++..+++.|+++.|+.+|.+.+.+++..++++|.+++..+... ....+.+.|+++
T Consensus 348 ~A~~~L~nl~-~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~---------~~~~l~~~~~i~ 417 (528)
T 4b8j_A 348 EACWTISNIT-AGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD---------QIKYLVSEGCIK 417 (528)
T ss_dssp HHHHHHHHHH-TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHTTCHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH---------HHHHHHHCCCHH
Confidence 9999999998 578888999999999999999999999999999999999999874222 346677899999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 306 KIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 306 ~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
.|..++.+++++++..|..+|.+++..
T Consensus 418 ~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 418 PLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888753
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.4e-34 Score=281.82 Aligned_cols=323 Identities=21% Similarity=0.314 Sum_probs=286.7
Q ss_pred hhhhhhCCChHHHHhhcCCC-CCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 3 TRMVIDAGAVPVFIQLLLSP-HEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~-~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
.+.+++.|++|.|+++|+++ ++.++. .+..+..++..|+++.|+++| +.+..++..|+|+|.+++.
T Consensus 123 ~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~ 202 (530)
T 1wa5_B 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202 (530)
T ss_dssp HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35678899999999999997 677766 467888999999999999999 8889999999999999998
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVG 148 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~ 148 (379)
........+...+++|.|+.++.+.++.++..++|+|++|+.+...........++++.|+.++.++++.++..|+++|+
T Consensus 203 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 282 (530)
T 1wa5_B 203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 282 (530)
T ss_dssp TCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 76444555566799999999999999999999999999999775223334566899999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHH
Q psy664 149 NIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAA 228 (379)
Q Consensus 149 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~ 228 (379)
+++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+++.|+++.|+.+|.++++.++++|+
T Consensus 283 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~ 362 (530)
T 1wa5_B 283 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 362 (530)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHH
Confidence 99988888888888999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHH
Q psy664 229 WAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIE 308 (379)
Q Consensus 229 ~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~ 308 (379)
|+|+|++ .+++++++.+++.|+++.|+.+|.++++.++..++++|.+++..+.. .......+.+.|+++.|.
T Consensus 363 ~aL~~l~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-------~~~~~~~l~~~~~l~~L~ 434 (530)
T 1wa5_B 363 WTISNIT-AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-------RPDIIRYLVSQGCIKPLC 434 (530)
T ss_dssp HHHHHHT-TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-------CTHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHCCCHHHHH
Confidence 9999987 67788888899999999999999999999999999999999986432 002345677899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 309 FLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 309 ~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
.++.++++.++..|..+|.+++...
T Consensus 435 ~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 435 DLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999888643
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-35 Score=293.84 Aligned_cols=279 Identities=15% Similarity=0.121 Sum_probs=249.1
Q ss_pred hhhhhhCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCC
Q psy664 3 TRMVIDAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGK 70 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~ 70 (379)
++.+++.|++|.|+.+|+++++.+++ ++++|+.+++.|++|+|+.+| +.+...+++|+|+|+||+...
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999988888 778999999999999999999 888889999999999999875
Q ss_pred CCCCCh--HhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 71 TPPPDF--AKVAPALACLSRLLFHAD-PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 71 ~~~~~~--~~~~~~l~~L~~lL~~~d-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
++...+ ....+++|.|+.+|.++. ...+..|+|+|.||+.++++.++.+++.|+++.|+.+|.++++.++++|+++|
T Consensus 568 ~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L 647 (810)
T 3now_A 568 NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647 (810)
T ss_dssp CHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred ChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 442211 123579999999998663 45567899999999999888899999999999999999999999999999999
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHh-cCchHHHHHHHHhCcHHHHHH
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID-ANIFPSLIEILQKAEFKTRKE 226 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~i~~Li~ll~~~~~~v~~~ 226 (379)
+|++.+++.+.+.+...|.++.|+.++.+.+..++++|+|+|+|++.+++.+++.+++ .|.++.|++++.+++++++++
T Consensus 648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~ 727 (810)
T 3now_A 648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHR 727 (810)
T ss_dssp HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHH
T ss_pred HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHH
Confidence 9999877655554423799999999999999999999999999999888999999998 899999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC---CHHHHHHHHHHHHHHHHHcH
Q psy664 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL---DAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 227 a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~ 282 (379)
|+|+|+|++ .++.++..++++.|++++|+.++... +.++++.++.+|.+++..+.
T Consensus 728 A~~aL~NL~-~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 728 GIVIILNMI-NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 999999998 57788999999999999999999754 68999999999999998764
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=6.4e-35 Score=289.58 Aligned_cols=321 Identities=15% Similarity=0.139 Sum_probs=270.7
Q ss_pred hhhhhh-hCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 2 QTRMVI-DAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 2 ~~~~~~-~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
++..++ ..|++|.|+.++.|++..+++ ++.+|+.+++.|+ +.|+.++ +.+..++..|+|+|+++..
T Consensus 281 ~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s 359 (810)
T 3now_A 281 VGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGS 359 (810)
T ss_dssp HHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 344555 889999999999999887765 7899999999986 9999999 7778888899999999975
Q ss_pred CC--CCC-CCh--HhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHH
Q psy664 69 GK--TPP-PDF--AKVAPALACLSRLLFHA--DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVS 141 (379)
Q Consensus 69 ~~--~~~-~~~--~~~~~~l~~L~~lL~~~--d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~ 141 (379)
.. ++. +.+ ....++++.|.++|.++ |++++..|+|+|+||+.+++...+...+.|++|.|+.+|.+++..++.
T Consensus 360 ~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~ 439 (810)
T 3now_A 360 YGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLY 439 (810)
T ss_dssp TTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHH
T ss_pred ccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHH
Confidence 32 122 222 22457789999999988 899999999999999998876666666789999999999999999999
Q ss_pred HHHHHHHHhhcCCchh--------------------------------hHHHhhcCcHHHHHHhhcCCChhhHHHHHHHH
Q psy664 142 AALRAVGNIVTGDDQQ--------------------------------TQVILNCSALMCLLHLIQSPKESIRKEACWAV 189 (379)
Q Consensus 142 ~al~~L~nl~~~~~~~--------------------------------~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l 189 (379)
.|+++|+||+.+.+.+ .+.+++.|++|.|+.++.++++.+++.|+|+|
T Consensus 440 ~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL 519 (810)
T 3now_A 440 GVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVL 519 (810)
T ss_dssp HHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999865311 26788999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHH-HHcCChHHHHHhhccC-CHHHH
Q psy664 190 SNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYL-IQQGCIEPFCELLTLL-DAKII 267 (379)
Q Consensus 190 ~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l-~~~~~i~~L~~lL~~~-d~~v~ 267 (379)
+||+ +++++++.++++|.+|.|+.++.++++..++.|+|+|+|++...+++..... ...+++++|+.+|.++ +...+
T Consensus 520 ~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~ 598 (810)
T 3now_A 520 NAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALEN 598 (810)
T ss_dssp HHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHH
T ss_pred HHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHH
Confidence 9997 6778899999999999999999999999999999999999876676543211 1236899999999865 33555
Q ss_pred HHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 268 QVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 268 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
..++++|.|++...+.. ...+.+.|++++|..|+.|+++.|++.|.++|.++....+
T Consensus 599 ~eAl~AL~NLa~~~d~~----------~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 599 FESLMALTNLASMNESV----------RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHHHHHHHHHTTSCHHH----------HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCHHH----------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence 78999999999875543 4567789999999999999999999999999999987543
No 13
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=272.71 Aligned_cols=280 Identities=14% Similarity=0.106 Sum_probs=241.3
Q ss_pred ChhhhhhhCCCh----------HHHHhhcCCCC--CC-----ccc------------------CchhHHHHHhCCChHHH
Q psy664 1 MQTRMVIDAGAV----------PVFIQLLLSPH--ED-----QVT------------------HPSVETMSLDNNILYPL 45 (379)
Q Consensus 1 ~~~~~~~~~g~i----------~~L~~lL~s~~--~~-----v~~------------------~~~~r~~i~~~g~i~~L 45 (379)
|+++...+.|++ +.+++++.+.. .+ +++ ++++|+.+++.|++++|
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~L 194 (458)
T 3nmz_A 115 DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI 194 (458)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence 467777788888 88888898763 22 221 78999999999999999
Q ss_pred HhcC-C-----------CChhHHHHHHHHHHHHhCCCCCCCChHh-HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCC-
Q psy664 46 IDKP-K-----------NRLSMVRNSVWVLSNLCRGKTPPPDFAK-VAPALACLSRLLFHADPDVLADACWAISYLSDG- 111 (379)
Q Consensus 46 l~lL-~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~- 111 (379)
+.+| . .+..++++|+|+|.|||+++++.+..+. ..|++|.|+++|.+++++++..|+|+|+||+.+
T Consensus 195 v~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~ 274 (458)
T 3nmz_A 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274 (458)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence 9999 2 2356899999999999998743433333 467799999999999999999999999999985
Q ss_pred ChHHHHHHHhcCcHHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHh-hcCcHHHHHHhhcCCCh----hhHHHH
Q psy664 112 PNEKIQAVIDAGVCRRLVELL-MHDQHKVVSAALRAVGNIVTGDDQQTQVIL-NCSALMCLLHLIQSPKE----SIRKEA 185 (379)
Q Consensus 112 ~~~~~~~~~~~g~i~~L~~lL-~~~~~~i~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a 185 (379)
+++.+..+.+.|+++.|+++| .+.++.+++.|+++|+||+...+..+..+. ..|++|.|+++|.+.+. .+++.|
T Consensus 275 ~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A 354 (458)
T 3nmz_A 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG 354 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHH
Confidence 567888999999999999975 557889999999999999985545444454 89999999999987764 499999
Q ss_pred HHHHHHhhc---CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC
Q psy664 186 CWAVSNITA---GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL 262 (379)
Q Consensus 186 ~~~l~nl~~---~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~ 262 (379)
+|+|+|++. ++++..+.+.+.|.++.|+.+|.+++.+++++|+|+|.|++ .+++++...+++.|+++.|+++|.++
T Consensus 355 ~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa-~~~~~~~~~i~~~G~I~~Lv~LL~s~ 433 (458)
T 3nmz_A 355 GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLKNLIHSK 433 (458)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH-SSCHHHHHHHHHHTHHHHHHTTTTCS
T ss_pred HHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 999999986 78999999999999999999999999999999999999997 67899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHc
Q psy664 263 DAKIIQVALNGLENILKLG 281 (379)
Q Consensus 263 d~~v~~~al~~L~~l~~~~ 281 (379)
+.++++.|+++|.||+...
T Consensus 434 ~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 434 HKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999754
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=5.2e-33 Score=270.52 Aligned_cols=313 Identities=16% Similarity=0.181 Sum_probs=261.4
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
+...+++.|+++.|+++|++.+...+. ++..|..+++.|+++.|++++ +.+..++++++|+|.+++.
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 355678899999999999876543222 677889999999999999999 7789999999999999998
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC--CChHHHHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH--DQHKVVSAALRA 146 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~i~~~al~~ 146 (379)
..... ....+++|.|++++.+++++++..++|+|++++.++++.+..+.+.|+++.|+++|.+ +++.++..|+++
T Consensus 257 ~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 257 AATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp TCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 76322 2346899999999999999999999999999999888899999999999999999986 347999999999
Q ss_pred HHHhhcCCch---hhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHH
Q psy664 147 VGNIVTGDDQ---QTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222 (379)
Q Consensus 147 L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~ 222 (379)
|+|++.+++. .+..+.+.|++|.|.++|.+++ ..+++.|+|+++|++.++.. .+.+.+.|+++.|++++.+++++
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHH
Confidence 9999976543 3567888999999999999887 59999999999999876554 47888999999999999999999
Q ss_pred HHHHHHHHHHH--HhcC------------------CCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 223 TRKEAAWAITN--ATSG------------------GTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 223 v~~~a~~~l~n--l~~~------------------~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
+|++|+|+++| +... .+++....+.+.|+++.|+.++.+++++++..+.++|.++...
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-- 490 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-- 490 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--
Confidence 99999988887 2222 2345556788999999999999999999999999999998742
Q ss_pred HhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy664 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~ 329 (379)
+.++..+.+.|+++.|..+++|++++|+++|..+|.++
T Consensus 491 ---------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 ---------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 23567899999999999999999999999999999875
No 15
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.6e-33 Score=257.86 Aligned_cols=255 Identities=15% Similarity=0.139 Sum_probs=225.6
Q ss_pred CchhHHHHHhCCChHHHHhcC-CC-----------ChhHHHHHHHHHHHHhCCCCCCCChHh-HhhhHHHHHHhhcCCCh
Q psy664 29 HPSVETMSLDNNILYPLIDKP-KN-----------RLSMVRNSVWVLSNLCRGKTPPPDFAK-VAPALACLSRLLFHADP 95 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~d~ 95 (379)
++++|+.+++.|++++|+.+| +. +..++++|+|+|.|||+++++.+..+. ..|++|.|+++|+++++
T Consensus 62 d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~ 141 (354)
T 3nmw_A 62 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141 (354)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH
Confidence 789999999999999999999 21 357899999999999998743444442 45779999999999999
Q ss_pred HHHHHHHHHHHHhcCC-ChHHHHHHHhcCcHHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHHh-hcCcHHHHHH
Q psy664 96 DVLADACWAISYLSDG-PNEKIQAVIDAGVCRRLVEL-LMHDQHKVVSAALRAVGNIVTGDDQQTQVIL-NCSALMCLLH 172 (379)
Q Consensus 96 ~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~l-L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~ 172 (379)
+++..|+|+|+||+.+ +++.+..+.+.|+++.|+++ +++.++.+++.|+++|+|++..++..+..+. ..|++|.|++
T Consensus 142 ~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~ 221 (354)
T 3nmw_A 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 221 (354)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHH
Confidence 9999999999999985 56788889999999999997 4667899999999999999986655555555 7899999999
Q ss_pred hhcCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy664 173 LIQSPKE----SIRKEACWAVSNITA---GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRY 245 (379)
Q Consensus 173 lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 245 (379)
+|.+.++ .+++.|+|+|+|++. ++++..+.+.+.|.++.|+.+|.+++.+++++|+|+|.|++ .+++++...
T Consensus 222 lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa-~~~~~~~~~ 300 (354)
T 3nmw_A 222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-ARNPKDQEA 300 (354)
T ss_dssp HTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-SSCHHHHHH
T ss_pred HhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh-CCCHHHHHH
Confidence 9987654 499999999999986 78899999999999999999999999999999999999996 678899999
Q ss_pred HHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 246 LIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 246 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
+.+.|+++.|+++|.+++.++++.++++|.+++...+..
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999875543
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=264.96 Aligned_cols=319 Identities=15% Similarity=0.157 Sum_probs=264.6
Q ss_pred hhhhhCCChHHHHhhcCCCCC------------Cccc------------CchhHHHHHhCCCh----------HHHHhcC
Q psy664 4 RMVIDAGAVPVFIQLLLSPHE------------DQVT------------HPSVETMSLDNNIL----------YPLIDKP 49 (379)
Q Consensus 4 ~~~~~~g~i~~L~~lL~s~~~------------~v~~------------~~~~r~~i~~~g~i----------~~Ll~lL 49 (379)
..+++.|++|.|+++|...+. +++. .++..+...+.|++ +.+++++
T Consensus 64 ~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (458)
T 3nmz_A 64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQ 143 (458)
T ss_dssp HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 578999999999999997543 2222 45556666677777 5566666
Q ss_pred -CC--Chh-----H-------HHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-----------CChHHHHHHHH
Q psy664 50 -KN--RLS-----M-------VRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-----------ADPDVLADACW 103 (379)
Q Consensus 50 -~~--~~~-----~-------~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d~~v~~~a~~ 103 (379)
+. +.+ + +.+|+|+|.|++.+. +.++.+...|+++.|+.+|.. .++.++..|+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~ 222 (458)
T 3nmz_A 144 EAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222 (458)
T ss_dssp TTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HhhccccccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHH
Confidence 22 111 3 339999999998764 667777888999999999952 24679999999
Q ss_pred HHHHhcCCChHHHHHHHh-cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHhhcCcHHHHHHhh-cCCChh
Q psy664 104 AISYLSDGPNEKIQAVID-AGVCRRLVELLMHDQHKVVSAALRAVGNIVTG-DDQQTQVILNCSALMCLLHLI-QSPKES 180 (379)
Q Consensus 104 aL~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~ 180 (379)
+|.+|+.+++..+..+.. .|++|.|+.+|.++++.+++.|+|+|+|++.+ ++..+..+.+.|++|.|+++| .+.+..
T Consensus 223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~ 302 (458)
T 3nmz_A 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHH
T ss_pred HHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHH
Confidence 999999988766666654 46699999999999999999999999999985 567788899999999999975 556789
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHH-hcCchHHHHHHHHhCcH----HHHHHHHHHHHHHhc--CCCHHHHHHHHHcCChH
Q psy664 181 IRKEACWAVSNITAGNRQQIQAVI-DANIFPSLIEILQKAEF----KTRKEAAWAITNATS--GGTPDQIRYLIQQGCIE 253 (379)
Q Consensus 181 v~~~a~~~l~nl~~~~~~~~~~~~-~~~~i~~Li~ll~~~~~----~v~~~a~~~l~nl~~--~~~~~~~~~l~~~~~i~ 253 (379)
+++.|+++++||+.++++....+. ..|.++.|+.+|.+.++ +++++|+|+|.|++. .+++++.+.+.+.|+++
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~ 382 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH
Confidence 999999999999886666555665 78999999999987654 499999999999874 27888999999999999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 254 PFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 254 ~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
.|+.+|.+.+..+++.|+++|.|++...... ...+.+.|++..|..++.++++.+++.|...|.++....
T Consensus 383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~----------~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKD----------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHH----------HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcCCHHH----------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998543332 467889999999999999999999999999999999764
No 17
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=271.60 Aligned_cols=318 Identities=16% Similarity=0.181 Sum_probs=259.8
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCC-ccc-----------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHED-QVT-----------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~-v~~-----------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
++..+++.|+++.|+++|++.+.+ ++. ++.+|..+++.|+++.|++++ +.+..+++.++|+|.++|+
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 456788999999999999887532 222 678899999999999999999 7789999999999999998
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRA 146 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~ 146 (379)
.... .....+++|.|++++++++++++..++|+|++|+.++++.++.+.+.|+++.|+.++.+. .+.++..|+++
T Consensus 254 ~~~~---~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 254 AATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp GCTT---CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 7532 233468999999999999999999999999999998888899999999999999999873 37999999999
Q ss_pred HHHhhcCCch---hhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHH
Q psy664 147 VGNIVTGDDQ---QTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222 (379)
Q Consensus 147 L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~ 222 (379)
|+||+...+. ....+.+.|+++.|.++|.+++ ..+++.|+|+++|++.+...+ +.+++.|+++.|++++.+.+++
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchh
Confidence 9999975432 2344778999999999999876 699999999999998765554 8888999999999999987777
Q ss_pred HHHHHHHHHHH--HhcCC------------------CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 223 TRKEAAWAITN--ATSGG------------------TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 223 v~~~a~~~l~n--l~~~~------------------~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
+|++|+|+++| ++..+ +......+.+.|+++.|+.+|.+.+++++..++++|.++...
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-- 487 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-- 487 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 66666666555 33222 334445778999999999999999999999999999998752
Q ss_pred HhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHH--------------------HHHHHHHhcCCCc
Q psy664 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQK--------------------AFDIIEHYFGSEE 334 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~--------------------a~~il~~~~~~~~ 334 (379)
+.++..+.++|+++.|..++++++++|++. +..++..||..+.
T Consensus 488 ---------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~ 550 (644)
T 2z6h_A 488 ---------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP 550 (644)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred ---------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence 235688999999999999999999999553 5566777776653
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.3e-32 Score=259.44 Aligned_cols=319 Identities=21% Similarity=0.262 Sum_probs=277.5
Q ss_pred hhhhhC-CChHHHHhhcCCC-CCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhC
Q psy664 4 RMVIDA-GAVPVFIQLLLSP-HEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCR 68 (379)
Q Consensus 4 ~~~~~~-g~i~~L~~lL~s~-~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~ 68 (379)
+.+++. |++|.|+++|+++ +..++. +++.+..+++.|+++.|+++| +++..++..++|+|.+++.
T Consensus 57 ~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 57 DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcc
Confidence 456677 9999999999998 666665 356677788999999999999 8889999999999999998
Q ss_pred CCCCCCChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCC-hHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHH
Q psy664 69 GKTPPPDFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGP-NEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRA 146 (379)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~ 146 (379)
............+++|.|++++.+ .+.+++..++|+|++++.+. +.....+ ..++++.|++++.++++.++..++|+
T Consensus 137 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~ 215 (450)
T 2jdq_A 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWA 215 (450)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 763344445567999999999995 68999999999999999764 2222222 27899999999999999999999999
Q ss_pred HHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHH
Q psy664 147 VGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE 226 (379)
Q Consensus 147 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~ 226 (379)
|++++...+.....+.+.|+++.|++++.++++.++..|++++++++.+.+...+.+++.|+++.++.++.++++.+++.
T Consensus 216 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~ 295 (450)
T 2jdq_A 216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKE 295 (450)
T ss_dssp HHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHH
Confidence 99999887777788888999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH
Q psy664 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK 306 (379)
Q Consensus 227 a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~ 306 (379)
|+|+|+|++ .++++..+.+.+.|+++.|+.+|.+++++++..++++|.+++..+... ....+.+.|++..
T Consensus 296 a~~~L~~l~-~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~---------~~~~l~~~~~i~~ 365 (450)
T 2jdq_A 296 ACWTISNIT-AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE---------QIKYLVELGCIKP 365 (450)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHTCHHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH---------HHHHHHHCCCHHH
Confidence 999999997 678888888999999999999999999999999999999999863211 1344558899999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 307 IEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 307 l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
|..++.+++++++..|...|.++....
T Consensus 366 L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 366 LCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988643
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.5e-32 Score=264.18 Aligned_cols=318 Identities=16% Similarity=0.200 Sum_probs=260.6
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCCccc-----------C--chhHHHHHhCCChHHHHhcC-C-CChhHHHHHHHHHHHH
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHEDQVT-----------H--PSVETMSLDNNILYPLIDKP-K-NRLSMVRNSVWVLSNL 66 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~v~~-----------~--~~~r~~i~~~g~i~~Ll~lL-~-~~~~~~~~a~~~L~~l 66 (379)
++..+++.|+||.|+++|++++.++++ . +++|..+++.|+|++|+++| + .+.+++++++|+|.||
T Consensus 82 ~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 82 VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL 161 (584)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 577899999999999999999988887 2 78999999999999999999 4 6788999999999999
Q ss_pred hCCCCCCCChHhHhhhHHHHHHhhc------------------CCChHHHHHHHHHHHHhcCCChHHHHHHHhc-CcHHH
Q psy664 67 CRGKTPPPDFAKVAPALACLSRLLF------------------HADPDVLADACWAISYLSDGPNEKIQAVIDA-GVCRR 127 (379)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~L~~lL~------------------~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~ 127 (379)
+..+ ..+..+..+++|.|++++. ..+++++..|+++|.||+..+++.++.+.+. |+++.
T Consensus 162 S~~~--~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~ 239 (584)
T 3l6x_A 162 SSHD--SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDA 239 (584)
T ss_dssp TTSG--GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHH
T ss_pred hCCc--hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHH
Confidence 9854 3344444678999999871 2368999999999999999887878888885 66789
Q ss_pred HHHhhcC------CChHHHHHHHHHHHHhhcCCc-------------------------hhhHHHhhcCcHHHHHHhhc-
Q psy664 128 LVELLMH------DQHKVVSAALRAVGNIVTGDD-------------------------QQTQVILNCSALMCLLHLIQ- 175 (379)
Q Consensus 128 L~~lL~~------~~~~i~~~al~~L~nl~~~~~-------------------------~~~~~~~~~~~l~~L~~lL~- 175 (379)
|+.++++ .+...++.|+++|.|++.... ...+.+.+.++++.++.+|.
T Consensus 240 LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~ 319 (584)
T 3l6x_A 240 LIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319 (584)
T ss_dssp HHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence 9999874 467899999999999996521 01122233456788899995
Q ss_pred CCChhhHHHHHHHHHHhhcCChH---HHH-HHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Q psy664 176 SPKESIRKEACWAVSNITAGNRQ---QIQ-AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGC 251 (379)
Q Consensus 176 ~~~~~v~~~a~~~l~nl~~~~~~---~~~-~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~ 251 (379)
+.++.+++.|+|+|+|++++... .++ .+.+.+.+|.|+++|.+++.++++.|+|+|.|++.... .+.++..|+
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~---~~~~I~~g~ 396 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR---NKELIGKHA 396 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS---CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh---HHHHHHhCC
Confidence 45799999999999999987632 233 34456889999999999999999999999999985332 223457899
Q ss_pred hHHHHHhhccC--------CHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC--CHHHHHH
Q psy664 252 IEPFCELLTLL--------DAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE--NIEIYQK 321 (379)
Q Consensus 252 i~~L~~lL~~~--------d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~--~~~v~~~ 321 (379)
++.|+.+|.+. ..+++..++++|.||+...... ...+.+.|++.+|..++.+. .+.+++.
T Consensus 397 ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~----------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~ 466 (584)
T 3l6x_A 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA----------AKKLRETQGIEKLVLINKSGNRSEKEVRA 466 (584)
T ss_dssp HHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH----------HHHHHHTTHHHHHHHHHTCSSSCHHHHHH
T ss_pred HHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH----------HHHHHHCCChHHHHHHHhCCCCChHHHHH
Confidence 99999999875 3588999999999999765543 46788999999999999876 8999999
Q ss_pred HHHHHHHhcCCCc
Q psy664 322 AFDIIEHYFGSEE 334 (379)
Q Consensus 322 a~~il~~~~~~~~ 334 (379)
|..+|.+++...+
T Consensus 467 Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 467 AALVLQTIWGYKE 479 (584)
T ss_dssp HHHHHHHHHTSHH
T ss_pred HHHHHHHHHcCHH
Confidence 9999999998653
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=7.2e-31 Score=265.68 Aligned_cols=312 Identities=16% Similarity=0.165 Sum_probs=259.8
Q ss_pred hhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCC
Q psy664 3 TRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRG 69 (379)
Q Consensus 3 ~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~ 69 (379)
...+++.|+++.|+++|++.+...+. ++..+..+++.|+++.|+.++ +.+..++++++|+|.+|+..
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence 34567889999999999987654322 667889999999999999999 77889999999999999987
Q ss_pred CCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC-C-hHHHHHHHHHH
Q psy664 70 KTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD-Q-HKVVSAALRAV 147 (379)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~-~~i~~~al~~L 147 (379)
... .....+++|.|+++|++.+++++..|+|+|++|+.++++.+..+++.|+++.|+++|.+. + +.++..|+++|
T Consensus 391 ~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 391 ATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp CTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 633 223468999999999999999999999999999999888899999999999999999863 3 48999999999
Q ss_pred HHhhcCCch---hhHHHhhcCcHHHHHHhhcCCCh-hhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHH
Q psy664 148 GNIVTGDDQ---QTQVILNCSALMCLLHLIQSPKE-SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223 (379)
Q Consensus 148 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v 223 (379)
+||+..+.. ....+.+.++++.|+++|.+++. .+++.|+|+|+|++.++.. ...+.+.|+++.|++++.++++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHhcchhH
Confidence 999875443 23467788999999999998874 9999999999999875544 478889999999999998876555
Q ss_pred HH----------------------HHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHc
Q psy664 224 RK----------------------EAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 224 ~~----------------------~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 281 (379)
++ .++.+|++++ .++.....+.+.|+++.|+.+|.++++.++..++.+|.++...
T Consensus 547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La--~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~- 623 (780)
T 2z6g_A 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA--RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 623 (780)
T ss_dssp HHTTC------CCSTTCCHHHHHHHHHHHHHHHT--TSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHhhccccchhhcccChHHHHHHHHHHHHHHh--cChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 54 4555556654 2455556688999999999999999999999999999999742
Q ss_pred HHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 282 EEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 282 ~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
+.++..+.+.|+++.|..++++++++|++.|..+|.++..
T Consensus 624 ----------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 624 ----------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp ----------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2356889999999999999999999997766555555444
No 21
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.98 E-value=1.9e-31 Score=254.38 Aligned_cols=308 Identities=14% Similarity=0.129 Sum_probs=254.2
Q ss_pred ChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChH
Q psy664 11 AVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFA 77 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 77 (379)
.+|.|+++|+++++.++. ++..|..+++.|++|.|+++| +++..++..|+|+|.||+...++.+..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 589999999999888776 567788999999999999999 8889999999999999999754666667
Q ss_pred hHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh--------cC--------CChHHH
Q psy664 78 KVAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL--------MH--------DQHKVV 140 (379)
Q Consensus 78 ~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL--------~~--------~~~~i~ 140 (379)
...|++|.|+++|. +++++++..++|+|+||+.+ ++.+..+++ |+++.|+++| ++ .+..+.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 78899999999999 88999999999999999988 467777888 9999999999 32 256777
Q ss_pred HHHHHHHHHhhcCCchhhHHHhhc-CcHHHHHHhhcC------CChhhHHHHHHHHHHhhcC------------------
Q psy664 141 SAALRAVGNIVTGDDQQTQVILNC-SALMCLLHLIQS------PKESIRKEACWAVSNITAG------------------ 195 (379)
Q Consensus 141 ~~al~~L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~------------------ 195 (379)
+.|+|+|+|++.+ ++.++.+.+. |+++.|+.+|++ .+..+++.|++++.|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 7788889987 999999999975 4567899999999998631
Q ss_pred --------------------------------ChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHHHHHHHhcCCCH--
Q psy664 196 --------------------------------NRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTP-- 240 (379)
Q Consensus 196 --------------------------------~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~~l~nl~~~~~~-- 240 (379)
.++..+.+++.|+++.++.+|.++ ++.+++.|+|+|+|++....+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112233455667889999999876 689999999999999854332
Q ss_pred HHH-HHHH-HcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC---
Q psy664 241 DQI-RYLI-QQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN--- 315 (379)
Q Consensus 241 ~~~-~~l~-~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~--- 315 (379)
... +..+ +.|+++.|+++|.+++.++++.++|+|.|+..... ....+ ..|++..|.+++.+.+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~-----------~~~~i-~~~~i~~Lv~lL~~~~~~~ 387 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-----------LHRVM-GNQVFPEVTRLLTSHTGNT 387 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-----------GHHHH-HHHTHHHHHHTTTSCCSCS
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH-----------HHHHH-HHhhhHHHHHhccCCCCCC
Confidence 123 4444 68999999999999999999999999999987322 22444 4589999999998764
Q ss_pred ---HHHHHHHHHHHHHhcCCC
Q psy664 316 ---IEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 316 ---~~v~~~a~~il~~~~~~~ 333 (379)
+++...+...|.++....
T Consensus 388 ~~~~~v~~~~l~~l~ni~~~~ 408 (457)
T 1xm9_A 388 SNSEDILSSACYTVRNLMASQ 408 (457)
T ss_dssp TTHHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHhcC
Confidence 468889999999988654
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=4.3e-30 Score=225.56 Aligned_cols=243 Identities=28% Similarity=0.420 Sum_probs=226.8
Q ss_pred CChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 40 NILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 40 g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
|.++.|+++| +.+.+++..++|+|.+++.........+...|++|.|+++|++++++++..++|+|++++.++++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 6789999999 778999999999999999987445566667799999999999999999999999999999998889999
Q ss_pred HHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChH
Q psy664 119 VIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 198 (379)
+.+.|+++.++.+++++++.++..|+++|+|++..++.....+.+.|+++.|++++.++++.++..|+|+++|++.+++.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999998888
Q ss_pred HHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHH
Q psy664 199 QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 278 (379)
..+.+.+.|+++.|+.++.+.++.++..|+++|+|++ .++++....+.+.|+++.|+.++.++++++++.++++|.++.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999998 578888889999999999999999999999999999999999
Q ss_pred HHcHH
Q psy664 279 KLGEE 283 (379)
Q Consensus 279 ~~~~~ 283 (379)
.....
T Consensus 241 ~~~~~ 245 (252)
T 4hxt_A 241 SGGWL 245 (252)
T ss_dssp HTCBC
T ss_pred cCCCc
Confidence 86543
No 23
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.6e-30 Score=236.61 Aligned_cols=272 Identities=15% Similarity=0.124 Sum_probs=235.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-----------CChHHHHHHHHHHHHhcCCChHHHHHHH
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-----------ADPDVLADACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d~~v~~~a~~aL~~l~~~~~~~~~~~~ 120 (379)
....+..|+|+|.|++.+. +.++.+...|+++.|+.+|.. .+++++..|+|+|.+|+.+++..+..+.
T Consensus 45 ~~~~~~~A~~aL~nls~d~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455668999999999885 677788889999999999952 2378999999999999988876766665
Q ss_pred h-cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC-CchhhHHHhhcCcHHHHHHhh-cCCChhhHHHHHHHHHHhhcCCh
Q psy664 121 D-AGVCRRLVELLMHDQHKVVSAALRAVGNIVTG-DDQQTQVILNCSALMCLLHLI-QSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 121 ~-~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
. .|++|.|+++|+++++.+++.|+|+|+|++.+ ++..+..+.+.|++|.|+++| ++.+..+++.|+++++||+.+++
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 4 46699999999999999999999999999986 567788899999999999975 66788999999999999988676
Q ss_pred HHHHHHH-hcCchHHHHHHHHhCcH----HHHHHHHHHHHHHhc--CCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHH
Q psy664 198 QQIQAVI-DANIFPSLIEILQKAEF----KTRKEAAWAITNATS--GGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVA 270 (379)
Q Consensus 198 ~~~~~~~-~~~~i~~Li~ll~~~~~----~v~~~a~~~l~nl~~--~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a 270 (379)
+....+. ..|.++.|++++.+.++ +++++|+|+|.|++. .+++++.+.+.+.|+++.|+.+|.+.+..+++.+
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 6666666 78999999999987654 599999999999873 2688888999999999999999999999999999
Q ss_pred HHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 271 LNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 271 l~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
+++|.|++...+.. ...+.+.|++..|..|+.++++.+++.|...|.++....+
T Consensus 284 ~~aL~nLa~~~~~~----------~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 284 CGTLWNLSARNPKD----------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHTSSCHHH----------HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHH----------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999998543332 4678899999999999999999999999999999998754
No 24
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.97 E-value=4.6e-30 Score=228.99 Aligned_cols=233 Identities=16% Similarity=0.185 Sum_probs=202.8
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHH-hhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHh
Q psy664 95 PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVE-LLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHL 173 (379)
Q Consensus 95 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 173 (379)
.+-+..|+..|.+++.+. ++...+.+.|+++.|+. +|.++++.++..|+|+|+|++.+++..++.+++.|++|.|+++
T Consensus 54 ~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 467888999999999875 46666889999999999 9999999999999999999999999999999999999999999
Q ss_pred hcC-CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCh
Q psy664 174 IQS-PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCI 252 (379)
Q Consensus 174 L~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i 252 (379)
|.+ ++..+++.|+|+|+|++.+++...+.+.+.|.++.|+.+|+++++++++.|+|+|+|++ .++++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~-~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL-VGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHCGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-hCChHHHHHHHHcCCH
Confidence 985 47899999999999999999999999999999999999999999999999999999998 5578889999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhc-CCcchHHHHHHHhccHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q psy664 253 EPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQT-GSVNPYVVLIEECYGLDKIEFLQSHE-NIEIYQKAFDIIEHYF 330 (379)
Q Consensus 253 ~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~-~~~~~~~~~i~~~g~l~~l~~l~~~~-~~~v~~~a~~il~~~~ 330 (379)
+.|+.+|.+++..++..++++|.+|+.......+.. .....+..++++. ++.++.++ +.++|++|..||++||
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999998755432211 1123466777654 67778676 7999999999999999
Q ss_pred CCCc
Q psy664 331 GSEE 334 (379)
Q Consensus 331 ~~~~ 334 (379)
++++
T Consensus 287 ~~~~ 290 (296)
T 1xqr_A 287 SSPA 290 (296)
T ss_dssp C---
T ss_pred CCCC
Confidence 8654
No 25
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=4.9e-30 Score=225.55 Aligned_cols=240 Identities=33% Similarity=0.498 Sum_probs=219.9
Q ss_pred CCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHH
Q psy664 39 NNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQ 117 (379)
Q Consensus 39 ~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~ 117 (379)
...++.+.+.| +.+.+++..++|+|.++.....+....+...|++|.|+++|++++++++..++|+|++++.++++.+.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34578888989 88999999999999776554445556667789999999999999999999999999999998888999
Q ss_pred HHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy664 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
.+++.|+++.|+.+|+++++.++..|+++|+|++.+.+.....+.+.|+++.|+++|.++++.++..|+|+++|++.+++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999999999999998876665888999999999999999999999999999999999898
Q ss_pred HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
+..+.+.+.|+++.|+.++.++++.++..|+|+|+|++ .++++....+.+.|+++.|+.++.+++++++..++++|.++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 98999999999999999999999999999999999997 67888888999999999999999999999999999999988
Q ss_pred HH
Q psy664 278 LK 279 (379)
Q Consensus 278 ~~ 279 (379)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 26
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=3.7e-30 Score=247.63 Aligned_cols=313 Identities=15% Similarity=0.156 Sum_probs=253.5
Q ss_pred hhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCC-CCC
Q psy664 7 IDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRG-KTP 72 (379)
Q Consensus 7 ~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~-~~~ 72 (379)
...+.+|.|+++|.+++..++. +...|..+++.|+||+|+++| +.+..+++.|+|+|.||+.. +.+
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4678999999999999887766 678899999999999999999 98999999999999999986 345
Q ss_pred CCChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc------------------
Q psy664 73 PPDFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM------------------ 133 (379)
Q Consensus 73 ~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~------------------ 133 (379)
.+..+...|++|.|+++|.+ .+.+++..++++|++|+..+ +.+..+++ ++++.|++++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 66777788999999999997 57899999999999999864 56666775 57999999872
Q ss_pred CCChHHHHHHHHHHHHhhcCCchhhHHHhhc-CcHHHHHHhhcC------CChhhHHHHHHHHHHhhcCChH--------
Q psy664 134 HDQHKVVSAALRAVGNIVTGDDQQTQVILNC-SALMCLLHLIQS------PKESIRKEACWAVSNITAGNRQ-------- 198 (379)
Q Consensus 134 ~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~-------- 198 (379)
.+++.+++.|.++|.|++..+++.++.+.+. |+++.|+.++++ .+...++.|+|+|.||+.....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 2367999999999999998887778878875 667899999864 4578899999999999865211
Q ss_pred -----------------HHHHHHhcCchHHHHHHHHh-CcHHHHHHHHHHHHHHhcCCCH--HHHH-HHHHcCChHHHHH
Q psy664 199 -----------------QIQAVIDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGGTP--DQIR-YLIQQGCIEPFCE 257 (379)
Q Consensus 199 -----------------~~~~~~~~~~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~~~--~~~~-~l~~~~~i~~L~~ 257 (379)
.+..+.+.++++.++.++.. .++.+++.|+|+|.|++....+ ...+ .+.+.++++.|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 11222333567888999965 5799999999999999854332 2233 3345688999999
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC--------CHHHHHHHHHHHHHh
Q psy664 258 LLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE--------NIEIYQKAFDIIEHY 329 (379)
Q Consensus 258 lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~--------~~~v~~~a~~il~~~ 329 (379)
||.+++..+++.++++|.|+...... ...| ..|++..|..++.+. ++++...|+..|.++
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~-----------~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARN-----------KELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSC-----------HHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhH-----------HHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999975432 2344 679999999999876 478888899999888
Q ss_pred cCCC
Q psy664 330 FGSE 333 (379)
Q Consensus 330 ~~~~ 333 (379)
....
T Consensus 431 ~a~~ 434 (584)
T 3l6x_A 431 IAEN 434 (584)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 6553
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=9.7e-29 Score=216.89 Aligned_cols=244 Identities=27% Similarity=0.413 Sum_probs=227.2
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
+.+|.|+++|.+++++++..|+++|.+++...++.+..+.+.|+++.|+++|.++++.++..|+++|++++..++.....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999988888899999999999999999999999999999999999988888999
Q ss_pred HhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 161 ILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
+.+.|+++.++.++.++++.++..|+|+|+|++..+++....+.+.|+++.+++++.+.+++++..|+++|+|++ .+++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~-~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCH
Confidence 999999999999999999999999999999999888999999999999999999999999999999999999997 6677
Q ss_pred HHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHH
Q psy664 241 DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQ 320 (379)
Q Consensus 241 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~ 320 (379)
.....+.+.|+++.|+.++.++++.++..++++|.+++...+.. ...+.+.|+++.|..++.++++++++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----------~~~l~~~~~i~~L~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA----------IKAIVDAGGVEVLQKLLTSTDSEVQK 230 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH----------HHHHHHTTHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH----------HHHHHHCCCHHHHHHHHCCCcHHHHH
Confidence 88888999999999999999999999999999999999754433 46788999999999999999999999
Q ss_pred HHHHHHHHhcCCCcc
Q psy664 321 KAFDIIEHYFGSEEE 335 (379)
Q Consensus 321 ~a~~il~~~~~~~~~ 335 (379)
.|..+|.++......
T Consensus 231 ~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 231 EAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999876543
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=1.5e-28 Score=216.10 Aligned_cols=240 Identities=37% Similarity=0.539 Sum_probs=219.9
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
...+.+...|+++|++++..|+++|.++....++.++.+++.|+++.|+++|+++++.++..|+++|+|++.+++..+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999999999999998766556678888999999999999999999999999999999999988899999
Q ss_pred HhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 161 ILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
+.+.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|++++.++++.++..|+|+|+|++ .+++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCCh
Confidence 999999999999999999999999999999998888777688999999999999999999999999999999997 6678
Q ss_pred HHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHH
Q psy664 241 DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQ 320 (379)
Q Consensus 241 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~ 320 (379)
+....+.+.|+++.|+.+|.++++.++..++++|.+++...+.. ...+.+.|+++.|..++.++++++++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----------~~~~~~~g~i~~L~~ll~~~~~~v~~ 240 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ----------KQAVKEAGALEKLEQLQSHENEKIQK 240 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH----------HHHHHHTTHHHHHHTTTTCSSSHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH----------HHHHHHCCcHHHHHHHhCCCCHHHHH
Confidence 88888999999999999999999999999999999999654433 45677999999999999999999999
Q ss_pred HHHHHHHHhcC
Q psy664 321 KAFDIIEHYFG 331 (379)
Q Consensus 321 ~a~~il~~~~~ 331 (379)
.|..+|.++..
T Consensus 241 ~A~~~L~~l~~ 251 (252)
T 4db8_A 241 EAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTC-
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=1.7e-27 Score=231.57 Aligned_cols=319 Identities=16% Similarity=0.160 Sum_probs=257.1
Q ss_pred hhhhCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhC-CChHHHHhcC--CCChhHHHHHHHHHHHHhCCC
Q psy664 5 MVIDAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDN-NILYPLIDKP--KNRLSMVRNSVWVLSNLCRGK 70 (379)
Q Consensus 5 ~~~~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~-g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~ 70 (379)
..+..|++|.|+++|++++..+++ ....+..++.. |+++.|+++| +.+..+++.++++|.+++..+
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 456789999999999998888877 55667677755 8999999999 458899999999999999875
Q ss_pred CCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q psy664 71 TPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNI 150 (379)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl 150 (379)
.....+...|++|.|+++|++++++++..++++|.+++.++++.+..+.+.|+++.|++++.+++..++..++.+|+++
T Consensus 92 -~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 92 -EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp -HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455556679999999999999999999999999999988767788888999999999999999999999999999999
Q ss_pred hcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCc---------------------
Q psy664 151 VTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANI--------------------- 208 (379)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~--------------------- 208 (379)
+.++++.+..+.+.|+++.++.++++.+ ...+..++.++.|++. +++....+.+.|+
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 9988888888999999999988886554 4455556666666654 3334444444444
Q ss_pred ------------------hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc--CCHHHHH
Q psy664 209 ------------------FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQ 268 (379)
Q Consensus 209 ------------------i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~ 268 (379)
++.|++++.+.+++++..|+|+|+|++ .++++....+.+.|+++.|+.+|.+ +++.++.
T Consensus 250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~ 328 (529)
T 1jdh_A 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328 (529)
T ss_dssp HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHH
Confidence 455566666677888888999999986 5667788889999999999999976 3479999
Q ss_pred HHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC-HHHHHHHHHHHHHhcCCC
Q psy664 269 VALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN-IEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 269 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~-~~v~~~a~~il~~~~~~~ 333 (379)
.++++|.+++...+.. ......+.+.|+++.|..++.+++ +.+++.|.++|.++..+.
T Consensus 329 ~a~~~L~nl~~~~~~~-------~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~ 387 (529)
T 1jdh_A 329 PAICALRHLTSRHQEA-------EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387 (529)
T ss_dssp HHHHHHHHHTSSSTTH-------HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHcCCchH-------HHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence 9999999997643211 123467889999999999999876 699999999999998754
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.96 E-value=1.2e-26 Score=198.25 Aligned_cols=200 Identities=36% Similarity=0.542 Sum_probs=187.8
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
..+..|.|..+|+++|++++..|+|+|++++.++++.+..+.+.|+++.|+++|.++++.++..|+++|+|++.+++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45788999999999999999999999999998888899999999999999999999999999999999999999888899
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
+.+.+.|+++.|+.+|+++++.++..|+|+|+|++.++++..+.+.+.|+++.|++++.+++++++..|+|+|.|++ .+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~-~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TS
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHH
Q psy664 239 TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILK 279 (379)
Q Consensus 239 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 279 (379)
+++....+.+.|+++.|+.++.++++++++.++++|.++..
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 67888889999999999999999999999999999998853
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.95 E-value=4.8e-27 Score=233.78 Aligned_cols=321 Identities=16% Similarity=0.157 Sum_probs=264.0
Q ss_pred hhhhhCCChHHHHhhcCCCCCCccc-----------CchhHHHHHhC-CChHHHHhcC-C-CChhHHHHHHHHHHHHhCC
Q psy664 4 RMVIDAGAVPVFIQLLLSPHEDQVT-----------HPSVETMSLDN-NILYPLIDKP-K-NRLSMVRNSVWVLSNLCRG 69 (379)
Q Consensus 4 ~~~~~~g~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~-g~i~~Ll~lL-~-~~~~~~~~a~~~L~~l~~~ 69 (379)
...+..|++|.|+++|++++..+++ ....|..++.. |+++.|++.| + .+.++++.++++|.+|+..
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 4567899999999999998888777 45566667655 8999999999 4 4889999999999999987
Q ss_pred CCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHH
Q psy664 70 KTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGN 149 (379)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~n 149 (379)
. .....+...|++|.|+++|+++++.++..|+++|.+++.+.+..+..+.+.|+++.|+++|+++++.++..++.+|++
T Consensus 88 ~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 88 R-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp H-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred h-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 5 345555667999999999999999999999999999998776778888899999999999999999999999999999
Q ss_pred hhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHH---------------
Q psy664 150 IVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLI--------------- 213 (379)
Q Consensus 150 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li--------------- 213 (379)
++.++++.+..+.+.|+++.|++++++.+ ..++..++.++.|++. +++....+++.|+++.|+
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 99888888889999999999999998765 6778889999999874 455566677766665554
Q ss_pred ------------------------HHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CC-HHHH
Q psy664 214 ------------------------EILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL-LD-AKII 267 (379)
Q Consensus 214 ------------------------~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d-~~v~ 267 (379)
.++.+.+++++..|+|+|+|++ .++++....+.+.|+++.|+.+|.+ ++ ..++
T Consensus 246 ~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~-~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 246 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 4455567788888888888887 5667778888999999999999987 33 7999
Q ss_pred HHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC-HHHHHHHHHHHHHhcCCCc
Q psy664 268 QVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN-IEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 268 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~-~~v~~~a~~il~~~~~~~~ 334 (379)
..++++|.++....... ......+.+.|+++.|..++.+++ +.+++.|.++|.++..+.+
T Consensus 325 ~~a~~aL~nL~~~~~~~-------~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEA-------EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp HHHHHHHHHHTSSSTTH-------HHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHHHHHHHhcCCchH-------HHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 99999999997532211 012345778999999999998875 7999999999999987643
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.95 E-value=2e-26 Score=196.78 Aligned_cols=199 Identities=33% Similarity=0.471 Sum_probs=183.8
Q ss_pred HhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHH
Q psy664 37 LDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK 115 (379)
Q Consensus 37 ~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~ 115 (379)
...|..++|+.+| +++..++..|+|+|.+++..+......+...|++|.|+++|.+++++++..|+|+|++++.++++.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3567889999999 889999999999999999876555666677899999999999999999999999999999888888
Q ss_pred HHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy664 116 IQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAG 195 (379)
Q Consensus 116 ~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 195 (379)
+..+++.|+++.|+.+|+++++.++..|+++|+|++.+++...+.+.+.|+++.|++++.++++.++..|+|+|+|++.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998888888899999999999999999999999999999999998
Q ss_pred ChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 196 NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 196 ~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
+++....+.+.|+++.|++++.+.++++++.|+++|.+++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999986
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.95 E-value=9.9e-27 Score=235.44 Aligned_cols=314 Identities=17% Similarity=0.173 Sum_probs=257.1
Q ss_pred hhhhhhhCCChHHHHhhcCCCCCCccc------------CchhHHHHHhCCChHHHHhcC-CC-ChhHHHHHHHHHHHHh
Q psy664 2 QTRMVIDAGAVPVFIQLLLSPHEDQVT------------HPSVETMSLDNNILYPLIDKP-KN-RLSMVRNSVWVLSNLC 67 (379)
Q Consensus 2 ~~~~~~~~g~i~~L~~lL~s~~~~v~~------------~~~~r~~i~~~g~i~~Ll~lL-~~-~~~~~~~a~~~L~~l~ 67 (379)
+++.+++.|++|.|+++|++++..++. +++.|..+++.|+++.|++++ +. .......++.+|.+|+
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 355677899999999999987765544 578888999999999999999 44 4455668899999999
Q ss_pred CCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 68 RGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
... .....+...|+++.|+.++.+.+..++..++|+|.+|+...... ....++++.|+.+|.+.++.++..|+++|
T Consensus 348 ~~~-~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 348 VCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp TST-THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCh-HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 754 44555567799999999999999999999999999999765431 11246899999999999999999999999
Q ss_pred HHhhcCCchhhHHHhhcCcHHHHHHhhcCC-C-hhhHHHHHHHHHHhhcCChHH---HHHHHhcCchHHHHHHHHhCc-H
Q psy664 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSP-K-ESIRKEACWAVSNITAGNRQQ---IQAVIDANIFPSLIEILQKAE-F 221 (379)
Q Consensus 148 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~v~~~a~~~l~nl~~~~~~~---~~~~~~~~~i~~Li~ll~~~~-~ 221 (379)
++|+.+++..++.+.+.|+++.|+++|.+. + ..++..|+++|+||+..+++. ...+.+.+.++.|+.++.+.+ +
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~ 503 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence 999998888888999999999999999763 3 489999999999998755432 346778899999999999876 4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCH----------------------HHHHHHHHHHHHHHH
Q psy664 222 KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDA----------------------KIIQVALNGLENILK 279 (379)
Q Consensus 222 ~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~----------------------~v~~~al~~L~~l~~ 279 (379)
.++++|+|+|+|++ .+ +.....+.+.|+++.|+.+|.+.+. +++..++.+|.+++.
T Consensus 504 ~v~~~A~~aL~nLa-~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~ 581 (780)
T 2z6g_A 504 PLIKATVGLIRNLA-LC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR 581 (780)
T ss_dssp HHHHHHHHHHHHHH-SS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh-cC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc
Confidence 99999999999997 44 4445788899999999999976543 345566666666653
Q ss_pred HcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 280 LGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
.. .....+.+.|+++.|..++.++++.++..|...|.++..+
T Consensus 582 ~~-----------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 582 DI-----------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp SH-----------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred Ch-----------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 21 2345788999999999999999999999999988877643
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.92 E-value=2.9e-24 Score=191.54 Aligned_cols=187 Identities=14% Similarity=0.184 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHH-hhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh
Q psy664 54 SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSR-LLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL 132 (379)
Q Consensus 54 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL 132 (379)
+-+..|...|.+++... +....+...|++|.|+. +|.+++++++..|+|+|++++.+++..++.+++.|+++.|+.+|
T Consensus 55 e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45668999999999865 23444556799999999 99999999999999999999999989999999999999999999
Q ss_pred cC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHH
Q psy664 133 MH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPS 211 (379)
Q Consensus 133 ~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~ 211 (379)
++ ++..+++.|+|+|+|++.+++...+.+.+.|++|.|+.+|++++..+++.|+|+|+|++.++++.++.+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 96 48899999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHhcCCCHHH
Q psy664 212 LIEILQKAEFKTRKEAAWAITNATSGGTPDQ 242 (379)
Q Consensus 212 Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~ 242 (379)
|+.+|.+.+++++..|+++|.|++. +.+..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~-~~~~~ 243 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVT-DFPQG 243 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHh-CChhH
Confidence 9999999999999999999999984 44443
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=6.8e-22 Score=168.94 Aligned_cols=195 Identities=16% Similarity=0.135 Sum_probs=168.6
Q ss_pred hHHHHHHhhcCCCh--HHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 82 ALACLSRLLFHADP--DVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 82 ~l~~L~~lL~~~d~--~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
.+|.++++|+++++ +++..+++++.+++.++++.+..+.+.|++|.|+++|+++++.+++.|+|+|+||+.++++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57999999999987 8999999999999988888899999999999999999999999999999999999998889999
Q ss_pred HHhhcCcHHHHHHhhc-CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHH----------------hCcHH
Q psy664 160 VILNCSALMCLLHLIQ-SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ----------------KAEFK 222 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~----------------~~~~~ 222 (379)
.+.+.|++|.|+++|. +++..+++.|+.+|+|++.. ++....+.+. .++.|++++. ..+++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999997 57899999999999999754 4445556654 5888887542 12679
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHc-CChHHHHHhhcc------CCHHHHHHHHHHHHHHHH
Q psy664 223 TRKEAAWAITNATSGGTPDQIRYLIQQ-GCIEPFCELLTL------LDAKIIQVALNGLENILK 279 (379)
Q Consensus 223 v~~~a~~~l~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~ 279 (379)
++.+|+++|.|+. ..+++..+.+.+. |+++.|+.+++. .+.+.++++..+|.|+..
T Consensus 167 v~~na~~~L~nLs-s~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 167 IFYNVTGCLRNMS-SAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHT-TSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999999987 5567788888876 678999999875 256899999999999863
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.8e-21 Score=190.05 Aligned_cols=307 Identities=15% Similarity=0.180 Sum_probs=237.4
Q ss_pred ChHHHHhhcCCCCCCccc-----------CchhHHHHHhCC-ChHHHHhcC-C-CChhHHHHHHHHHHHHhCCCCCC---
Q psy664 11 AVPVFIQLLLSPHEDQVT-----------HPSVETMSLDNN-ILYPLIDKP-K-NRLSMVRNSVWVLSNLCRGKTPP--- 73 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~-----------~~~~r~~i~~~g-~i~~Ll~lL-~-~~~~~~~~a~~~L~~l~~~~~~~--- 73 (379)
+.+.+.+.|.+++.+.++ .+..|+.++... .++.|+.++ . .+..+...+..+|.|++...+..
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e 414 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX 414 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence 445667777665433233 778888877655 489999999 3 67788999999999999964321
Q ss_pred -----------------------------------CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 74 -----------------------------------PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 74 -----------------------------------~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
...+...|++|.|+.++.++++.++..++|+|.+|+.+ ++.+..
T Consensus 415 ~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~ 493 (778)
T 3opb_A 415 XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQ 493 (778)
T ss_dssp CC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHH
T ss_pred hhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 01223458999999999999999999999999999976 578889
Q ss_pred HHhcCcHHHHHHhhcCCChH---HHHHHHHHHHHhhcCCchhhHHHhh----cCcHHHHHHhhcC-CChh----------
Q psy664 119 VIDAGVCRRLVELLMHDQHK---VVSAALRAVGNIVTGDDQQTQVILN----CSALMCLLHLIQS-PKES---------- 180 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~~~~~---i~~~al~~L~nl~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~---------- 180 (379)
+++.|+++.|++++.+.... .+..|+++|+++....+... ++. .|+++.|+.+|.. +...
T Consensus 494 lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 494 LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 99999999999999887544 89999999999985433222 121 3899999999983 2211
Q ss_pred --h-HHHHHHHHHHhhcCC----hHHHHHHHhc-CchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHH-HHHHHc--
Q psy664 181 --I-RKEACWAVSNITAGN----RQQIQAVIDA-NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQI-RYLIQQ-- 249 (379)
Q Consensus 181 --v-~~~a~~~l~nl~~~~----~~~~~~~~~~-~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~l~~~-- 249 (379)
+ +.+|+.+|.||+..+ .+..+.++.+ |.++.|..++.+.+..+|+.|+++++|++. +++.+ +.+.+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~--~~e~i~~k~~~~~~ 649 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS--HPLTIAAKFFNLEN 649 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT--SGGGTGGGTSCCSS
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHhhcC
Confidence 2 789999999998876 2445667775 999999999999999999999999999984 44443 233221
Q ss_pred ----CChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHH-HHHHhccHHHHHHhhcC--CCHHHHHHH
Q psy664 250 ----GCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVV-LIEECYGLDKIEFLQSH--ENIEIYQKA 322 (379)
Q Consensus 250 ----~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~-~i~~~g~l~~l~~l~~~--~~~~v~~~a 322 (379)
+.++.|+.+++.+|.++++.|.++|.++....+.. +. +++..++++.+..++.+ ++++++.++
T Consensus 650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i----------a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~ 719 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI----------AKELLTKKELIENAIQVFADQIDDIELRQRL 719 (778)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH----------HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH----------HHHHHHccccHHHHHHHHhccCCCHHHHHHH
Confidence 23789999999999999999999999997654432 33 44445899999998887 899999999
Q ss_pred HHHHHHhcCC
Q psy664 323 FDIIEHYFGS 332 (379)
Q Consensus 323 ~~il~~~~~~ 332 (379)
..++.++++.
T Consensus 720 ~~~l~NL~~~ 729 (778)
T 3opb_A 720 LMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999999973
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=6.8e-22 Score=168.94 Aligned_cols=194 Identities=15% Similarity=0.171 Sum_probs=167.1
Q ss_pred ChHHHHhcC-CCCh--hHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHH
Q psy664 41 ILYPLIDKP-KNRL--SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQ 117 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~ 117 (379)
.+|.++++| +.+. .++..++|+|.++|..+++.+..+...|++|.|+++|.+++++++..|+|+|.+|+.++++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 578999999 6666 8889999999999987656666777889999999999999999999999999999998888999
Q ss_pred HHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc----------------CCChh
Q psy664 118 AVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ----------------SPKES 180 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----------------~~~~~ 180 (379)
.+.+.|++|.|+++|. +.+..+++.|..+|.|++..+ ..+..+.+ +++|.|+.++. ..+..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 578999999999999999654 45555555 46888887652 12468
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHhc-CchHHHHHHHHhC------cHHHHHHHHHHHHHHhc
Q psy664 181 IRKEACWAVSNITAGNRQQIQAVIDA-NIFPSLIEILQKA------EFKTRKEAAWAITNATS 236 (379)
Q Consensus 181 v~~~a~~~l~nl~~~~~~~~~~~~~~-~~i~~Li~ll~~~------~~~v~~~a~~~l~nl~~ 236 (379)
++..|+++|.|++..+++..+.+.+. |+++.|+.+++.. +.+.+++|+.+|.|++.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 99999999999998888888888876 7899999999863 56889999999999863
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-22 Score=197.19 Aligned_cols=246 Identities=15% Similarity=0.119 Sum_probs=200.2
Q ss_pred hHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChH---HHHHHHHHHHH
Q psy664 32 VETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPD---VLADACWAISY 107 (379)
Q Consensus 32 ~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~aL~~ 107 (379)
.|..+++.|++|.|+.++ +.++.++..++|+|.||+... ..+..+...|+++.|++++.+.... .+..|+++|.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 567889999999999999 888999999999999999774 6677777889999999999877543 89999999999
Q ss_pred hcCCC-hHHHHHHHh---cCcHHHHHHhhcC-CCh------------HH-HHHHHHHHHHhhcCCc----hhhHHHhhc-
Q psy664 108 LSDGP-NEKIQAVID---AGVCRRLVELLMH-DQH------------KV-VSAALRAVGNIVTGDD----QQTQVILNC- 164 (379)
Q Consensus 108 l~~~~-~~~~~~~~~---~g~i~~L~~lL~~-~~~------------~i-~~~al~~L~nl~~~~~----~~~~~~~~~- 164 (379)
|+... +.. .+-. .|+++.|+++|.. +.. .+ +.+|+.+|.|++..++ ..++.++..
T Consensus 528 Llis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ 605 (778)
T 3opb_A 528 MLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTK 605 (778)
T ss_dssp HHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSH
T ss_pred HHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc
Confidence 98443 322 1111 3899999999983 221 12 6799999999998763 345667775
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHH-HHHHhcC------chHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQI-QAVIDAN------IFPSLIEILQKAEFKTRKEAAWAITNATSG 237 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~~------~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~ 237 (379)
|++|.|..+|.+.+..+|++|+|+++|++. +++.+ +.+.+.+ -++.|+.+++.+|.++|+.|+|+|+|++ .
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt-s 683 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA-T 683 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc-C
Confidence 999999999999999999999999999986 44443 3444322 3788999999999999999999999986 5
Q ss_pred CCHHHHHHHHHc-CChHHHHHhhcc--CCHHHHHHHHHHHHHHHHHcH
Q psy664 238 GTPDQIRYLIQQ-GCIEPFCELLTL--LDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 238 ~~~~~~~~l~~~-~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~ 282 (379)
+++...+.+++. ++++.++.++.. ++.+++..++.++.|++....
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 567777888876 799999999998 899999999999999997543
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.63 E-value=1.2e-14 Score=129.31 Aligned_cols=254 Identities=14% Similarity=0.110 Sum_probs=128.8
Q ss_pred hCCChHHHHhhcCCCCCCccc-CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHH
Q psy664 8 DAGAVPVFIQLLLSPHEDQVT-HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALAC 85 (379)
Q Consensus 8 ~~g~i~~L~~lL~s~~~~v~~-~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 85 (379)
+.+.++.|+++|.+++..++. ....-..+-..+.++.|++++ +.+..++..++|+|..+..... ....+++.
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~------~~~~l~~~ 94 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNI 94 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT------THHHHHHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc------cchHHHHH
Confidence 345666666666655444433 000000011222455555555 5555666666666666543210 01223444
Q ss_pred HHH-hhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc
Q psy664 86 LSR-LLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC 164 (379)
Q Consensus 86 L~~-lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~ 164 (379)
+.+ +++++++.++..++++|+++....+... ..+++.|+..+.++++.++..|+++|+++.. .
T Consensus 95 L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~ 158 (280)
T 1oyz_A 95 LNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------K 158 (280)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------H
Confidence 442 3455566666666666666653221111 1245566666666666666666666665432 1
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHH
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 244 (379)
+.++.|..++.++++.+|..|+++++++....+ ..++.++.++.+.++.+|..|+++|+++- +
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~---~----- 221 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK---D----- 221 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT---C-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC---C-----
Confidence 355666666666666666666666666532222 23455555666666666666666666642 1
Q ss_pred HHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh-cCCCHHHHHHHH
Q psy664 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ-SHENIEIYQKAF 323 (379)
Q Consensus 245 ~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~-~~~~~~v~~~a~ 323 (379)
...++.|..++.+++ ++..+.++|..+-. ...+..|..++ +++++++...+.
T Consensus 222 ----~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------------~~~~~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 222 ----KRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------------KTLLPVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp ----GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred ----HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------------hhhhHHHHHHHhcCCCcHHHHHHH
Confidence 123555555555433 55555555554311 12345555555 345666666666
Q ss_pred HHHH
Q psy664 324 DIIE 327 (379)
Q Consensus 324 ~il~ 327 (379)
..+.
T Consensus 275 ~~l~ 278 (280)
T 1oyz_A 275 DKLK 278 (280)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6554
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.62 E-value=7.7e-14 Score=133.19 Aligned_cols=295 Identities=11% Similarity=0.100 Sum_probs=227.1
Q ss_pred CchhHHHHHhCCChHHHHhcC---CCChhHHHHHHHHHHHHhCCCCCCC------------------ChHhHhhhHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP---KNRLSMVRNSVWVLSNLCRGKTPPP------------------DFAKVAPALACLS 87 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL---~~~~~~~~~a~~~L~~l~~~~~~~~------------------~~~~~~~~l~~L~ 87 (379)
+..+|..+. .++++.|+..| ..|.++.+.+..+|.++........ .+....+.++.|+
T Consensus 50 sk~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll 128 (651)
T 3grl_A 50 SKKYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLL 128 (651)
T ss_dssp TTTTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHH
T ss_pred HHHhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHH
Confidence 556665554 45689999999 4688999999999988766542211 1112347899999
Q ss_pred HhhcCCChHHHHHHHHHHHHhcCCChH-HHHHHHhc-CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcC
Q psy664 88 RLLFHADPDVLADACWAISYLSDGPNE-KIQAVIDA-GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCS 165 (379)
Q Consensus 88 ~lL~~~d~~v~~~a~~aL~~l~~~~~~-~~~~~~~~-g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~ 165 (379)
.+|++.|-.++..++..|..|+.+.++ ..+.++.. ++++.|+.+|.++.+.++-.++..|.+++.++.+..+.+.-.|
T Consensus 129 ~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEn 208 (651)
T 3grl_A 129 SLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFEN 208 (651)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 999999999999999999999987776 66667754 9999999999999999999999999999999988888888889
Q ss_pred cHHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcH------HHHHH---HHHHHH
Q psy664 166 ALMCLLHLIQSPK----ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEF------KTRKE---AAWAIT 232 (379)
Q Consensus 166 ~l~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~------~v~~~---a~~~l~ 232 (379)
+++.|.+++.... ..+...++.++.|+...++.....+.+.|.++.|..++...+. ....+ +..++.
T Consensus 209 aFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIr 288 (651)
T 3grl_A 209 AFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVR 288 (651)
T ss_dssp HHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHH
Confidence 9999999997654 3788999999999999999888899999999999999875432 23333 555566
Q ss_pred HHhcCCC-----HHHHHHHHHcCChHHHHHhhccC--CHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHh----
Q psy664 233 NATSGGT-----PDQIRYLIQQGCIEPFCELLTLL--DAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEEC---- 301 (379)
Q Consensus 233 nl~~~~~-----~~~~~~l~~~~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~---- 301 (379)
-++..+. ..+-..+.++|++..+++++... ...++..++.++..++......+. .|.+.
T Consensus 289 lLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~----------~fa~~~vp~ 358 (651)
T 3grl_A 289 VLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQD----------YFASVNAPS 358 (651)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHH----------HHHHCEESS
T ss_pred HHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHH----------HHhhccCCC
Confidence 6664432 23444678999999999998764 568999999999998887665442 12111
Q ss_pred -----ccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCc
Q psy664 302 -----YGLDKIEFLQS-HENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 302 -----g~l~~l~~l~~-~~~~~v~~~a~~il~~~~~~~~ 334 (379)
-.+..+..+.+ ++..+++-.|...++.|+...+
T Consensus 359 ~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 359 NPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp SSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred CCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 12333334443 4568899999999999998764
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.61 E-value=1.8e-13 Score=121.55 Aligned_cols=229 Identities=14% Similarity=0.034 Sum_probs=178.4
Q ss_pred HHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChH
Q psy664 36 SLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNE 114 (379)
Q Consensus 36 i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~ 114 (379)
..+.+.++.|+..| +++..++..|+|+|.++.. ..+++.|..++.++++.++..++++|+.+......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 45678899999999 8889999999999999862 35889999999999999999999999999754321
Q ss_pred HHHHHHhcCcHHHHH-HhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 115 KIQAVIDAGVCRRLV-ELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 115 ~~~~~~~~g~i~~L~-~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
.. .+++.+. .++.++++.++..++++|+++...++... ...++.|..++.++++.+|..|+++++++.
T Consensus 88 -~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 -ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp -HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred -ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 11 1344554 34678899999999999999975443222 246788999999999999999999999874
Q ss_pred cCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHH
Q psy664 194 AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNG 273 (379)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~ 273 (379)
. .+.++.|+.++.+.++.+|..|+++|+++. ...+. +++.|..++.++++.++..++++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~~~~~---------~~~~L~~~l~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININK-YDNSD---------IRDCFVEMLQDKNEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHTTCSCHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-cCcHH---------HHHHHHHHhcCCCHHHHHHHHHH
Confidence 2 258899999999999999999999999973 23332 36788889999999999999999
Q ss_pred HHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 274 LENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 274 L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
|.++-. ...+..|..++.+++ ++..|...|..+-
T Consensus 216 L~~~~~---------------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 216 LSYRKD---------------------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHHTTC---------------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HHHhCC---------------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 987641 123455555565544 7778887777764
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=3.9e-13 Score=128.36 Aligned_cols=283 Identities=14% Similarity=0.166 Sum_probs=211.8
Q ss_pred hHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC--CChHHHHHHHHHHHHhcCCChH---
Q psy664 42 LYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH--ADPDVLADACWAISYLSDGPNE--- 114 (379)
Q Consensus 42 i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~aL~~l~~~~~~--- 114 (379)
|+.|+.=+ +.-.+-+|.|+..|..+++. .+..+..+++|.|+..|+. .|.++...++.+|.++....++
T Consensus 23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~ 98 (651)
T 3grl_A 23 IQKLCDRVASSTLLDDRRNAVRALKSLSKK----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV 98 (651)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTTT----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHH----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc
Confidence 45555555 55677899999999999864 2344567889999999985 4789999999999887654322
Q ss_pred --------------HHHHH-HhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch-hhHHHh-hcCcHHHHHHhhcCC
Q psy664 115 --------------KIQAV-IDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ-QTQVIL-NCSALMCLLHLIQSP 177 (379)
Q Consensus 115 --------------~~~~~-~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~-~~~~~~-~~~~l~~L~~lL~~~ 177 (379)
..+.+ .+.+.++.|+.+|++++..++..++.+|..++...+. ..+.+. ..++++.|+.+|++.
T Consensus 99 ~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~ 178 (651)
T 3grl_A 99 EENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178 (651)
T ss_dssp ---------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS
T ss_pred cccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc
Confidence 12233 3457899999999999999999999999999988777 445555 449999999999999
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHcCChH
Q psy664 178 KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEF----KTRKEAAWAITNATSGGTPDQIRYLIQQGCIE 253 (379)
Q Consensus 178 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~----~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~ 253 (379)
+..+|.+|+..|.+++.++++..+.+.-.|.++.|++++..... .+...++..+.|++ ..++..-.++.+.|+++
T Consensus 179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL-r~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL-KNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTCGG
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH-hcCHHHHHHHHHcCCHH
Confidence 99999999999999998887755555566999999999987543 78889999999998 66776667889999999
Q ss_pred HHHHhhccCCH------HHHHH---HHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC--CHHHHHHH
Q psy664 254 PFCELLTLLDA------KIIQV---ALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE--NIEIYQKA 322 (379)
Q Consensus 254 ~L~~lL~~~d~------~v~~~---al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~--~~~v~~~a 322 (379)
.|..+|..++. ....+ ++.++.-++..+...+. .......+.++|+++.|.++..++ ...|+..|
T Consensus 258 ~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~----t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 258 RMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA----TSSCQKAMFQCGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp GGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH----HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence 99999975432 12222 33333333332111000 112235788999999999998776 57788888
Q ss_pred HHHHHHhcCCC
Q psy664 323 FDIIEHYFGSE 333 (379)
Q Consensus 323 ~~il~~~~~~~ 333 (379)
...+.....+.
T Consensus 334 l~tla~~irgN 344 (651)
T 3grl_A 334 INTVSEVIRGC 344 (651)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhCC
Confidence 87777665543
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.61 E-value=1.9e-14 Score=147.55 Aligned_cols=304 Identities=12% Similarity=0.109 Sum_probs=216.5
Q ss_pred CChHHHHhhcCCCCCCccc---------CchhHHHHH-------hCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCC
Q psy664 10 GAVPVFIQLLLSPHEDQVT---------HPSVETMSL-------DNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTP 72 (379)
Q Consensus 10 g~i~~L~~lL~s~~~~v~~---------~~~~r~~i~-------~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~ 72 (379)
+.+|.|+.++.+++..+++ ....+..+. -..+++.+++.+ +.+..++..|+++|.++.... +
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~ 206 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR-T 206 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-C
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-c
Confidence 4678888898888766666 112222211 123567777877 888899999999999887653 2
Q ss_pred CCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 73 PPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 73 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
.........+++.+.+++.+++++++..++++|..++...++.....+. ++++.++..+.+.++.++..|+.++..++.
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAE 285 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 1111223478899999999999999999999999999766544333232 578888899999999999999999999885
Q ss_pred CCchhhHHHh--hcCcHHHHHHhh-----------cC-----------CChhhHHHHHHHHHHhhcCChHHHHHHHhcCc
Q psy664 153 GDDQQTQVIL--NCSALMCLLHLI-----------QS-----------PKESIRKEACWAVSNITAGNRQQIQAVIDANI 208 (379)
Q Consensus 153 ~~~~~~~~~~--~~~~l~~L~~lL-----------~~-----------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~ 208 (379)
.. ...+.+. -..++|.+...+ .+ .+..+|+.|+.++..++...++. ++ ..+
T Consensus 286 ~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l 360 (852)
T 4fdd_A 286 QP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHI 360 (852)
T ss_dssp ST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHH
T ss_pred ch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHH
Confidence 43 1222111 114567777776 22 23467999999999987543322 11 146
Q ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhc
Q psy664 209 FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQT 288 (379)
Q Consensus 209 i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~ 288 (379)
++.+...+.+.+..+|..|+++++++. .+..+...... .++++.++.++.++++.++..++++++++........
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~-~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--- 435 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIA-EGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP--- 435 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTT-TTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH-hcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch---
Confidence 778888888889999999999999987 45544433222 3568899999999999999999999999987644321
Q ss_pred CCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 289 GSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 289 ~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
...+.. +.+..|...+.++++.++..|...|.++.+.
T Consensus 436 --~~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 436 --PDTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp --TTTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 112222 2367777777888999999999999998754
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.57 E-value=1.1e-14 Score=149.42 Aligned_cols=301 Identities=14% Similarity=0.146 Sum_probs=202.9
Q ss_pred CChHHHHhhcCCCCCCccc---------CchhHHHHH--hCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChH
Q psy664 10 GAVPVFIQLLLSPHEDQVT---------HPSVETMSL--DNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFA 77 (379)
Q Consensus 10 g~i~~L~~lL~s~~~~v~~---------~~~~r~~i~--~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 77 (379)
.++|.|++++++++..+|. .......+. -.++++.+++++ +.+..+++.++++|..++... +..-..
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~-~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR-MDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC-HHHHGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC-HHHHHH
Confidence 3577788888877666665 000000010 013556666666 778899999999999999864 211112
Q ss_pred hHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhc---CcHHHHHHhh-----------cC---------
Q psy664 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDA---GVCRRLVELL-----------MH--------- 134 (379)
Q Consensus 78 ~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~---g~i~~L~~lL-----------~~--------- 134 (379)
...++++.+..++.+.+++++..|++.+..++.... ..+ .+.. .+++.++..+ .+
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd 330 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence 345789999999999999999999999999987642 222 2222 4567777766 22
Q ss_pred --CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHH
Q psy664 135 --DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSL 212 (379)
Q Consensus 135 --~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~L 212 (379)
.+..++..|..+|+.++...+.. ++ ..+++.+...+.+++..+|..|++++++++.+..+.....+ .++++.+
T Consensus 331 ~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l 405 (852)
T 4fdd_A 331 TISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHL 405 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHH
Confidence 23457888999999888543221 11 24678888889999999999999999999988776555433 3688999
Q ss_pred HHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcc
Q psy664 213 IEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVN 292 (379)
Q Consensus 213 i~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 292 (379)
+.++.+.++.+|..|+|++++++... ......-.-.++++.|+..|.++++.++..++++|.+++...... ..
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~------l~ 478 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTLSRYAHWV-VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE------LV 478 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTHHHH-HHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG------GG
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh------hH
Confidence 99999999999999999999986311 110000011245788888888889999999999999999765433 33
Q ss_pred hHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 293 PYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 293 ~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
+|...+ ++.|..+++..+......+...+..+.
T Consensus 479 ~~l~~l-----l~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 479 PYLAYI-----LDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp GGHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHH-----HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 444333 555655555444444444444444443
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.56 E-value=4.9e-13 Score=112.65 Aligned_cols=183 Identities=20% Similarity=0.160 Sum_probs=155.7
Q ss_pred CChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 40 NILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 40 g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
+..+.+++.| +.+..++..++++|..+.. ...++.|++++.++++.++..++++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4567889999 8899999999999998753 2578999999999999999999999998853
Q ss_pred HHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChH
Q psy664 119 VIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 198 (379)
.+.++.|+.+|.++++.++..|+++|+++.. ...++.|..++.++++.+|..|+++++++..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2468889999999999999999999998752 2467889999999999999999999999842
Q ss_pred HHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHH
Q psy664 199 QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 278 (379)
...++.|..++.+.++.++..|+++|.++- +++ .++.|..++.++++.++..+..+|.++-
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~---~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIG---GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999972 333 3667778888899999999999988753
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.56 E-value=5e-13 Score=113.49 Aligned_cols=189 Identities=20% Similarity=0.172 Sum_probs=157.4
Q ss_pred hCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHH
Q psy664 38 DNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKI 116 (379)
Q Consensus 38 ~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~ 116 (379)
..+.++.|++.| +.+..++..+++.|..+.. ...++.|.+++.++++.++..++++|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 345788999999 8899999999999998754 3588999999999999999999999998863
Q ss_pred HHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy664 117 QAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGN 196 (379)
Q Consensus 117 ~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 196 (379)
.+.++.|+.+|.++++.++..|+++|+.+.. .+.++.|..++.++++.+|..|+++++++. .
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~ 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG--D 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C
Confidence 3568899999999999999999999998852 256889999999999999999999999983 2
Q ss_pred hHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHH
Q psy664 197 RQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLEN 276 (379)
Q Consensus 197 ~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~ 276 (379)
...++.|..++.+.++.++..|+++|..+- .++ .++.|..++.++++.++..+..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG---GER---------VRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---chh---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 246788999999999999999999999973 222 36678888889999999999999998
Q ss_pred HHHHcH
Q psy664 277 ILKLGE 282 (379)
Q Consensus 277 l~~~~~ 282 (379)
+-....
T Consensus 201 ~~~~~~ 206 (211)
T 3ltm_A 201 HKSFNH 206 (211)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 876544
No 47
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.54 E-value=3.9e-14 Score=138.94 Aligned_cols=293 Identities=11% Similarity=0.073 Sum_probs=212.2
Q ss_pred CCChHHHHhhcCCCCCCccc-------------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCC
Q psy664 9 AGAVPVFIQLLLSPHEDQVT-------------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPP 74 (379)
Q Consensus 9 ~g~i~~L~~lL~s~~~~v~~-------------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~ 74 (379)
..++|.+++++++++..++. .+..+....-..++|.+..++ +.+..++..++|+|..++..-.
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--- 356 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--- 356 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---
T ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---
Confidence 34678888888877766665 111111112234566666777 7788999999999999876421
Q ss_pred ChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCC
Q psy664 75 DFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 75 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~ 154 (379)
.......++|.+..++++++++++..++.++..+....... .....++|.+..++.++++.++..++.+++.++..-
T Consensus 357 ~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 357 KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHc
Confidence 11234568899999999999999999999998887432211 122457888999999999999999999999987521
Q ss_pred chhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHH
Q psy664 155 DQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA 234 (379)
Q Consensus 155 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl 234 (379)
... .....++|.+.+++.+++..+|..|+.+++.++...... .....++|.+..++.+.+..+|..++++++.+
T Consensus 434 ~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 434 GVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp CGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 111 122346888999999999999999999999987532221 12346788888888888999999999999998
Q ss_pred hcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC
Q psy664 235 TSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE 314 (379)
Q Consensus 235 ~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~ 314 (379)
...-..+ .....+++.+..++.++++.++..++++|..+....... +.....+..|..+.+++
T Consensus 508 ~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-------------~~~~~~~p~l~~l~~d~ 570 (588)
T 1b3u_A 508 SEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-------------TLQSEVKPILEKLTQDQ 570 (588)
T ss_dssp HHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-------------HHHHHHHHHHHHHTTCS
T ss_pred HHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-------------hhHHHHHHHHHHHcCCC
Confidence 6421111 123467899999999999999999999999998653221 11133466677788999
Q ss_pred CHHHHHHHHHHHHHhc
Q psy664 315 NIEIYQKAFDIIEHYF 330 (379)
Q Consensus 315 ~~~v~~~a~~il~~~~ 330 (379)
+++|+..|...+..+-
T Consensus 571 d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 571 DVDVKYFAQEALTVLS 586 (588)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhh
Confidence 9999999999998764
No 48
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.53 E-value=1.4e-13 Score=134.93 Aligned_cols=298 Identities=9% Similarity=-0.001 Sum_probs=215.8
Q ss_pred CChHHHHhhcCCCCCCccc---------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCC-hHh
Q psy664 10 GAVPVFIQLLLSPHEDQVT---------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPD-FAK 78 (379)
Q Consensus 10 g~i~~L~~lL~s~~~~v~~---------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~ 78 (379)
.++|.+.+++++++..+|. ............+++.++.++ +++..++..++++|..++..-.+... ...
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 3566666666666555555 010101112234677888888 78889999999999999986532211 134
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
...++|.+..+++++++.++..++++++.++..-... .....+++.+..+++++++.++..++.+++.+.......
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~- 397 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR- 397 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-
Confidence 5678999999999999999999999999987432111 122357899999999999999999999999887532211
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
.....++|.+..++.+.+..+|..++.+++.++...... .....+++.+..++.+.+..+|..|+.+++.++...
T Consensus 398 --~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 472 (588)
T 1b3u_A 398 --QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472 (588)
T ss_dssp --HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 122457889999999888999999999999986421110 112246788888888889999999999999987533
Q ss_pred CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHH
Q psy664 239 TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEI 318 (379)
Q Consensus 239 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v 318 (379)
..+. ....+++.+..++.+++..++..+++++..+....... .+ ....+..+..++++++++|
T Consensus 473 ~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--------~~-----~~~~~~~l~~~l~d~~~~V 535 (588)
T 1b3u_A 473 GKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--------IT-----TKHMLPTVLRMAGDPVANV 535 (588)
T ss_dssp CHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--------HH-----HHHTHHHHHHGGGCSCHHH
T ss_pred Cchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH--------HH-----HHHHHHHHHhhCCCCCchH
Confidence 3321 12356888888888889999999999999998754321 11 2245778888899999999
Q ss_pred HHHHHHHHHHhcCCC
Q psy664 319 YQKAFDIIEHYFGSE 333 (379)
Q Consensus 319 ~~~a~~il~~~~~~~ 333 (379)
+..+...+..++..-
T Consensus 536 r~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 536 RFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888643
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.53 E-value=2.2e-12 Score=108.61 Aligned_cols=186 Identities=21% Similarity=0.196 Sum_probs=157.3
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
..+..+.++++|+++++.++..|+++|+.+.. .+.++.|+++|.++++.++..|+++|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 45788999999999999999999999998763 2568899999999999999999999998752
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
...++.|..+|.++++.+|..|+++++++. . ...++.|+.++.+.++.++..|+++|+++-
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--- 135 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDEDWFVRIAAAFALGEIG--- 135 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 256888999999999999999999999983 2 247788899999999999999999999973
Q ss_pred CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHH
Q psy664 239 TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEI 318 (379)
Q Consensus 239 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v 318 (379)
+ ...++.|..++.++++.++..++++|..+-. + ..+..|..++.++++.|
T Consensus 136 ~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~-------------------~~~~~L~~~l~d~~~~v 185 (201)
T 3ltj_A 136 D---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E-------------------RVRAAMEKLAETGTGFA 185 (201)
T ss_dssp C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H-------------------HHHHHHHHHHHHCCHHH
T ss_pred C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h-------------------hHHHHHHHHHhCCCHHH
Confidence 2 2457889999999999999999999998721 1 12566777888899999
Q ss_pred HHHHHHHHHHhc
Q psy664 319 YQKAFDIIEHYF 330 (379)
Q Consensus 319 ~~~a~~il~~~~ 330 (379)
+..|...|.++-
T Consensus 186 r~~A~~aL~~l~ 197 (201)
T 3ltj_A 186 RKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 50
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.53 E-value=1.2e-12 Score=111.01 Aligned_cols=188 Identities=20% Similarity=0.180 Sum_probs=156.8
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
...++.|++.|+++++.++..++++|+.+.. .+.++.|+.+|.++++.++..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 5689999999999999999999999998754 3578999999999999999999999998752
Q ss_pred HHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC
Q psy664 160 VILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~ 239 (379)
.+.++.|..+|.++++.+|..|+++++++.. .+.++.|+.++.+.++.++..|+++|+++- .
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~ 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---D 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---C
Confidence 3567889999999999999999999999842 257788999999999999999999999973 2
Q ss_pred HHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHH
Q psy664 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIY 319 (379)
Q Consensus 240 ~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~ 319 (379)
...++.|..++.++++.++..++.+|..+-. ...++.|..+++++++.|+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------------~~~~~~L~~~l~d~~~~vr 191 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------------ERVRAAMEKLAETGTGFAR 191 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------------HHHHHHHHHHHHHCCHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------------hhHHHHHHHHHhCCCHHHH
Confidence 1357889999999999999999999988732 1225667888888999999
Q ss_pred HHHHHHHHHhcCCC
Q psy664 320 QKAFDIIEHYFGSE 333 (379)
Q Consensus 320 ~~a~~il~~~~~~~ 333 (379)
..|...|.++....
T Consensus 192 ~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 192 KVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHhcCCCC
Confidence 99999998776543
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.51 E-value=3.9e-13 Score=132.08 Aligned_cols=231 Identities=16% Similarity=0.228 Sum_probs=158.9
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHH----
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK---- 115 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~---- 115 (379)
+++.+.+++ +.++.+++.|++++..+++.. + ......+.++.+..+|.++|+.++..|+++|..++...++.
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~ 198 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-A--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLD 198 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-C--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-h--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchh
Confidence 345677888 889999999999999999864 2 23334578999999999999999999999999999765421
Q ss_pred -----HHHHHh----------------------------cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC---CchhhH
Q psy664 116 -----IQAVID----------------------------AGVCRRLVELLMHDQHKVVSAALRAVGNIVTG---DDQQTQ 159 (379)
Q Consensus 116 -----~~~~~~----------------------------~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~---~~~~~~ 159 (379)
...++. ..+++.+..++++.++.++..|++++..+... +++..+
T Consensus 199 l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~ 278 (591)
T 2vgl_B 199 LNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN 278 (591)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH
T ss_pred ccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 222221 13566667778888999999999999998742 223333
Q ss_pred HHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHH-----------------HH-H----H---Hhc----CchH
Q psy664 160 VILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ-----------------IQ-A----V---IDA----NIFP 210 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-----------------~~-~----~---~~~----~~i~ 210 (379)
.+. ..+.+.|+.++. +++.+|..|+.+++.+....++. ++ . + .+. .+++
T Consensus 279 ~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~ 356 (591)
T 2vgl_B 279 MLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLA 356 (591)
T ss_dssp HHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHH
T ss_pred HHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHH
Confidence 222 234455555543 55677777777777665321111 10 0 0 011 2455
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 211 SLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 211 ~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
.|...+.+.|.+++++++++|++++. +.+..... +++.|++++...+..++..+..++..++...+
T Consensus 357 ~L~~~l~~~d~~~r~~~v~aI~~la~-~~~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 357 ELKEYATEVDVDFVRKAVRAIGRCAI-KVEQSAER-----CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHT-TCHHHHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH-hChhHHHH-----HHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 66667777889999999999999874 44433333 47888999988888888888888888876544
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.46 E-value=9.1e-12 Score=122.33 Aligned_cols=310 Identities=13% Similarity=0.106 Sum_probs=198.4
Q ss_pred ChHHHHhhcCCCCCCccc---------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHh
Q psy664 11 AVPVFIQLLLSPHEDQVT---------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA 80 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~---------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 80 (379)
+.+.+++++.+++..++. .....+.+ .-+++.+.+-| ++++.++..|..+|+++.. .....
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-------~~~~~ 120 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-------DKITE 120 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-------GGGHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-------HHHHH
Confidence 466777888887766655 11111121 22456777777 7788888888888877652 22456
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh---
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ--- 157 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~--- 157 (379)
.++|.+.+++.+.++.++..|++++.++....++.. .+.++++.+..+|.++++.++..|+++|+.++..++..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 788999999999999999999999999987655432 23578999999999999999999999999999765422
Q ss_pred ------hHHHhh----------------------------cCcHHHHHHhhcCCChhhHHHHHHHHHHhhc---CChHHH
Q psy664 158 ------TQVILN----------------------------CSALMCLLHLIQSPKESIRKEACWAVSNITA---GNRQQI 200 (379)
Q Consensus 158 ------~~~~~~----------------------------~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~---~~~~~~ 200 (379)
...+.. ..+++.+..++++.++.|+.+|++++..+.. .+++..
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 111111 1345666667788889999999999999864 234444
Q ss_pred HHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC----------------CHHHH-----HHHH---Hc----CCh
Q psy664 201 QAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG----------------TPDQI-----RYLI---QQ----GCI 252 (379)
Q Consensus 201 ~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~----------------~~~~~-----~~l~---~~----~~i 252 (379)
+.+. ..+.+.|+.++ ++++++|..|+.+|..+...+ ++..+ ..+. +. .++
T Consensus 278 ~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv 355 (591)
T 2vgl_B 278 NMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVL 355 (591)
T ss_dssp HHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHH
T ss_pred HHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHH
Confidence 4433 24556666555 367778877777777765311 11111 1111 11 234
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhc----------CC-------cchHHHHHHH-----hccHHHHHHh
Q psy664 253 EPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQT----------GS-------VNPYVVLIEE-----CYGLDKIEFL 310 (379)
Q Consensus 253 ~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~----------~~-------~~~~~~~i~~-----~g~l~~l~~l 310 (379)
+.|...+.+.|.+++..++++|++++...+...... .+ ...+..+++. ..++..|...
T Consensus 356 ~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~ 435 (591)
T 2vgl_B 356 AELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCEN 435 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHH
Confidence 556666777899999999999999987554321110 00 0001112221 1234444443
Q ss_pred hc-CCCHHHHHHHHHHHHHhcCCCc
Q psy664 311 QS-HENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 311 ~~-~~~~~v~~~a~~il~~~~~~~~ 334 (379)
+. ...++++..+.++|+.|...-+
T Consensus 436 l~~~~~~~~~~~~~wilGey~~~~~ 460 (591)
T 2vgl_B 436 LDSLDEPDARAAMIWIVGEYAERID 460 (591)
T ss_dssp TTTCCSHHHHHHHHHHHHTTCTTCT
T ss_pred HHhccCHHHHHHHHHHHHccccccc
Confidence 43 4567777777788887765543
No 53
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.36 E-value=4.6e-12 Score=129.87 Aligned_cols=302 Identities=11% Similarity=0.144 Sum_probs=201.4
Q ss_pred ChHHHHhhcCCCCCCccc---------C-----chhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCC-C
Q psy664 11 AVPVFIQLLLSPHEDQVT---------H-----PSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPP-P 74 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~---------~-----~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~-~ 74 (379)
++|.+...+++.+..+++ . ...... +. .+++.+++.+ +.+..++..++|+++.++..-.+. .
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY-VH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHH-HH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 345556666776666655 1 111111 11 3677778878 778889999999999998753211 1
Q ss_pred ChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh----HHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHHHH
Q psy664 75 DFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN----EKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRAVG 148 (379)
Q Consensus 75 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~----~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~L~ 148 (379)
.......++|.++..++++ +.++..++|++.+++.... ......+ ..+++.++..+.+. ++.++..++.+++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 1224567899999999775 9999999999998875311 1111111 24678888888854 3789999999999
Q ss_pred HhhcCCchhhHHHhhcCcHHHHHHhhcCC---------------ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHH
Q psy664 149 NIVTGDDQQTQVILNCSALMCLLHLIQSP---------------KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLI 213 (379)
Q Consensus 149 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~---------------~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li 213 (379)
.++...+......+. .++|.+.+.+... ...++..++.++++++......+..... .+++.+.
T Consensus 526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~ 603 (861)
T 2bpt_A 526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF 603 (861)
T ss_dssp HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 998765443332222 3566676666421 3567889999999988755443332222 5778888
Q ss_pred HHHHhCcH-HHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcc
Q psy664 214 EILQKAEF-KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVN 292 (379)
Q Consensus 214 ~ll~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 292 (379)
..+...+. .++..++++++.++.....+...++- .+++.+...+.++++.++..++.++..++...... ..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~------~~ 675 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISNSLEED------FR 675 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG------GH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh------cc
Confidence 88888766 89999999999987432222222332 26788888888888899999999999998765432 33
Q ss_pred hHHHHHHHhccHHHHHHhhcCCC--HHHHHHHHHHHHHhcC
Q psy664 293 PYVVLIEECYGLDKIEFLQSHEN--IEIYQKAFDIIEHYFG 331 (379)
Q Consensus 293 ~~~~~i~~~g~l~~l~~l~~~~~--~~v~~~a~~il~~~~~ 331 (379)
++...+ +..+...+.+++ .+++..+...+..+..
T Consensus 676 ~~~~~l-----~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 676 RYSDAM-----MNVLAQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHHHH-----HHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred chHHHH-----HHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence 444333 555666665554 7788888877766554
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.36 E-value=1.5e-11 Score=116.70 Aligned_cols=278 Identities=13% Similarity=0.096 Sum_probs=192.9
Q ss_pred CChHHHHhcC-CC--ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhcCCChH
Q psy664 40 NILYPLIDKP-KN--RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA--DPDVLADACWAISYLSDGPNE 114 (379)
Q Consensus 40 g~i~~Ll~lL-~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~aL~~l~~~~~~ 114 (379)
++++.|+..+ +. +..++..++++|..++....+.........+++.+.+++.++ ++.++..++++++++...-.+
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777 66 788889999999999975322112223457899999999987 799999999999987643221
Q ss_pred HHH-HHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 115 KIQ-AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 115 ~~~-~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
... .....-+++.+...+.++++.++..+++++..++...+......+..++++.+...+.+.++.++..|++.+.+++
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 111 0111124667777788889999999999999998654433222222267888888888888999999999999886
Q ss_pred cCChH---------------------HHHHHHhcCchHHHHHHHHhC-------cHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy664 194 AGNRQ---------------------QIQAVIDANIFPSLIEILQKA-------EFKTRKEAAWAITNATSGGTPDQIRY 245 (379)
Q Consensus 194 ~~~~~---------------------~~~~~~~~~~i~~Li~ll~~~-------~~~v~~~a~~~l~nl~~~~~~~~~~~ 245 (379)
..... .....+ ..++|.++..+... +..+|..|+.+|..++.........
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~- 365 (462)
T 1ibr_B 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP- 365 (462)
T ss_dssp HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-
T ss_pred HHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-
Confidence 43210 111111 24566666666432 3478999999999887433322222
Q ss_pred HHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHH
Q psy664 246 LIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDI 325 (379)
Q Consensus 246 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~i 325 (379)
.+++.+...+.+++..++..++.+|+.++....... ..++ + ...+..+..++.++++.|+..|.+.
T Consensus 366 ----~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~-----~~~~---l--~~~~~~l~~~l~d~~~~Vr~~a~~~ 431 (462)
T 1ibr_B 366 ----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ-----LKPL---V--IQAMPTLIELMKDPSVVVRDTAAWT 431 (462)
T ss_dssp ----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT-----TCTT---T--TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH-----HHHH---H--HHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 346777788888999999999999999986332110 1111 1 3457888899999999999999999
Q ss_pred HHHhcCCC
Q psy664 326 IEHYFGSE 333 (379)
Q Consensus 326 l~~~~~~~ 333 (379)
|.++....
T Consensus 432 l~~~~~~~ 439 (462)
T 1ibr_B 432 VGRICELL 439 (462)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHhc
Confidence 99998653
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.34 E-value=2e-11 Score=120.45 Aligned_cols=300 Identities=12% Similarity=0.094 Sum_probs=193.8
Q ss_pred hHHHHhhcCCCCCCccc-----CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHH
Q psy664 12 VPVFIQLLLSPHEDQVT-----HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALAC 85 (379)
Q Consensus 12 i~~L~~lL~s~~~~v~~-----~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 85 (379)
+..|.+-|+++++.++. -...+..-+-..+++.+.+++ +.++.+++.|++++.+++... + . ...+.++.
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p--~--~v~~~~~~ 183 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-P--E--LMEMFLPA 183 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-G--G--GGGGGGGG
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-h--H--HHHHHHHH
Confidence 45556666666655444 000000111123467777777 889999999999999999864 2 1 23478888
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC---------------CChHHHHHHHHHHHHh
Q psy664 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH---------------DQHKVVSAALRAVGNI 150 (379)
Q Consensus 86 L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---------------~~~~i~~~al~~L~nl 150 (379)
+..+|.+.|+.++..|+++|..++..+++....+. ..++.++++|.+ .++..+...+++|+.+
T Consensus 184 l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l 261 (618)
T 1w63_A 184 TKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL 261 (618)
T ss_dssp TTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh
Confidence 99999999999999999999999977554322222 567777776652 4778888888888888
Q ss_pred hcCCchhhHH-------Hh------------------------------hcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 151 VTGDDQQTQV-------IL------------------------------NCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 151 ~~~~~~~~~~-------~~------------------------------~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
+..++...+. +. ...+++.|..++.++++.+|..|+.+++.++
T Consensus 262 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 262 GRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp TTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 7654332110 00 0024566777777778888888888888887
Q ss_pred cCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHH
Q psy664 194 AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNG 273 (379)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~ 273 (379)
...+..++ ...+.++.++.+.|..+|+.|+.++..++...+.+ . +++.|...+.+.|.+++..+..+
T Consensus 342 ~~~p~~~~-----~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~---~-----iv~eL~~~l~~~d~e~r~~~v~~ 408 (618)
T 1w63_A 342 QTDHNAVQ-----RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIR---G-----MMKELLYFLDSCEPEFKADCASG 408 (618)
T ss_dssp HHHHHHHG-----GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTH---H-----HHHHHHHHHHHCCHHHHHHHHHH
T ss_pred hhCHHHHH-----HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHH---H-----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 54443221 35567788888889999999999999987544322 2 24667777777889999999999
Q ss_pred HHHHHHHcH---Hhhhh--------cC--C----cchHHHHHHHh-----ccHHHHHHhhcC--CCHHHHHHHHHHHHHh
Q psy664 274 LENILKLGE---EEAKQ--------TG--S----VNPYVVLIEEC-----YGLDKIEFLQSH--ENIEIYQKAFDIIEHY 329 (379)
Q Consensus 274 L~~l~~~~~---~~~~~--------~~--~----~~~~~~~i~~~-----g~l~~l~~l~~~--~~~~v~~~a~~il~~~ 329 (379)
|+.++.... .+.-. .+ - ...+.+.+... .++..|..++.+ .++.+.+.+.++|+.|
T Consensus 409 I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy 488 (618)
T 1w63_A 409 IFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEY 488 (618)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhh
Confidence 999987421 11000 00 0 11222233221 144555555442 3455666789999988
Q ss_pred cC
Q psy664 330 FG 331 (379)
Q Consensus 330 ~~ 331 (379)
..
T Consensus 489 ~~ 490 (618)
T 1w63_A 489 GD 490 (618)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.34 E-value=2e-10 Score=113.22 Aligned_cols=251 Identities=10% Similarity=0.053 Sum_probs=187.3
Q ss_pred hHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q psy664 42 LYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 42 i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~ 120 (379)
+..+.+-| ++++.++..|+++|+++... .....+++.+.+++.+.++.++..|+.++.++....++..
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v---- 177 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM---- 177 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----
Confidence 44555555 77888888999999998732 2456789999999999999999999999999987655433
Q ss_pred hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC---------------CChhhHHHH
Q psy664 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS---------------PKESIRKEA 185 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---------------~~~~v~~~a 185 (379)
.++++.+..+|.+.++.++..|+++|+.++..++.....+ ...+|.+.++|.+ .++..+..+
T Consensus 178 -~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~i 254 (618)
T 1w63_A 178 -EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRI 254 (618)
T ss_dssp -GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHH
Confidence 2678888899999999999999999999987654332222 2567878777653 468888999
Q ss_pred HHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhh
Q psy664 186 CWAVSNITAGNRQQIQAVIDANIFPSLIEILQK------AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259 (379)
Q Consensus 186 ~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~------~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL 259 (379)
+.+++.++..+++... .+++.|..++.. .+..+..+|++++.++. ..+.... .+++.|..++
T Consensus 255 l~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~--~~~~l~~-----~a~~~L~~~L 322 (618)
T 1w63_A 255 LRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIK--SESGLRV-----LAINILGRFL 322 (618)
T ss_dssp HHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC--CCHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC--CCHHHHH-----HHHHHHHHHH
Confidence 9999999877665332 455566666542 35689999999999963 3333221 2467888899
Q ss_pred ccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 260 TLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 260 ~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
.++++.++..++.+|..+....+.. +.+ ....+...+++++..|+.+|..++..+.+..
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~-------------~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNA-------------VQR--HRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHH-------------HGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHH-------------HHH--HHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 9999999999999999999865432 211 3456677778888888888888888877643
No 57
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.28 E-value=3e-11 Score=123.75 Aligned_cols=273 Identities=12% Similarity=0.054 Sum_probs=183.6
Q ss_pred HHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHH-HHHH
Q psy664 43 YPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKI-QAVI 120 (379)
Q Consensus 43 ~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~-~~~~ 120 (379)
+.+...+ +.+...+..++++++.++.+..+..-......++|.+...+.++++.++..++|+++.++....... ..-.
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 3344444 6778888999999999997642111112345788999999999999999999999998885321100 0001
Q ss_pred hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCc----hhhHHHhhcCcHHHHHHhhcCCC--hhhHHHHHHHHHHhhc
Q psy664 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDD----QQTQVILNCSALMCLLHLIQSPK--ESIRKEACWAVSNITA 194 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~----~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~nl~~ 194 (379)
-..+++.++..+.++ +.++..|++++++++.... ......+ ..+++.+.+++.+.+ +.+|..++.+++.++.
T Consensus 452 ~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 452 LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 124678888888776 8999999999999986421 1111111 245777888887544 7899999999999987
Q ss_pred CChHHHHHHHhcCchHHHHHHHHhC---------------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhh
Q psy664 195 GNRQQIQAVIDANIFPSLIEILQKA---------------EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259 (379)
Q Consensus 195 ~~~~~~~~~~~~~~i~~Li~ll~~~---------------~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL 259 (379)
..+......+. .++|.+++.+... ...++..++.++.+++..-......++ ..+++.+...+
T Consensus 530 ~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l 606 (861)
T 2bpt_A 530 YATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLL 606 (861)
T ss_dssp HCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHH
T ss_pred HcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHH
Confidence 55444443333 4677777777632 456788999999998753322111111 13567777778
Q ss_pred ccCCH-HHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 260 TLLDA-KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 260 ~~~d~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
...+. .++..++.++..++...... ..+|... .+..|...+++++++++..|..++..+..
T Consensus 607 ~~~~~~~v~~~~~~~l~~l~~~~~~~------~~~~l~~-----i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 607 EKKDSAFIEDDVFYAISALAASLGKG------FEKYLET-----FSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HSTTGGGTHHHHHHHHHHHHHHHGGG------GHHHHHH-----HHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHhhh------HHHHHHH-----HHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 77766 89999999999998765432 2233333 36677777778888899988888776654
No 58
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.24 E-value=8.7e-11 Score=117.05 Aligned_cols=197 Identities=13% Similarity=0.061 Sum_probs=152.4
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH-HhhcCCChHHHHHHHHHHHHhhcC-Cchhh
Q psy664 81 PALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV-ELLMHDQHKVVSAALRAVGNIVTG-DDQQT 158 (379)
Q Consensus 81 ~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~i~~~al~~L~nl~~~-~~~~~ 158 (379)
.++|. ++.|++++++.|..||++|++|+.+ +..++.+...+++..++ .+|.+++..++..|+++|+||+.. .....
T Consensus 35 ~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPV-LKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHH-HHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHH-HHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 45664 4668999999999999999999975 56777788888887765 568889999999999999999964 35666
Q ss_pred HHHhhcCcHHHHHHhhcCCC---------------------hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHH
Q psy664 159 QVILNCSALMCLLHLIQSPK---------------------ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ 217 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~ 217 (379)
..+...|+++.|..++.... ..+...++.++++++.++.+....+...+.++.++..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 78889999999998874210 134456888999999999888889999999999998885
Q ss_pred hC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhh--ccCCHHHHHHHHHHHHHHHHH
Q psy664 218 KA---EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL--TLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 218 ~~---~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL--~~~d~~v~~~al~~L~~l~~~ 280 (379)
+. ..+++..|+.+|.+++ ..+.+....+.+.+....+.-++ ...+...+..+++.|.|++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls-~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLS-EDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHH-TTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHh-ccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence 53 3689999999999987 77788888888776543333332 223333456677888888754
No 59
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.23 E-value=3.8e-11 Score=119.63 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=150.4
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHH-HHHhhcCCChHHHHHHHHHHHHhcCC-ChHHHH
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALAC-LSRLLFHADPDVLADACWAISYLSDG-PNEKIQ 117 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~lL~~~d~~v~~~a~~aL~~l~~~-~~~~~~ 117 (379)
.+.++++.| +++.+.+..|+|+|++|+.+. ...+.....++++. +..+|.+++.+++..|+++|+||+.+ ..+...
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 455677778 889999999999999999754 44455555677665 55678889999999999999999953 457778
Q ss_pred HHHhcCcHHHHHHhhcCCC---------------------hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC
Q psy664 118 AVIDAGVCRRLVELLMHDQ---------------------HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS 176 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~~~---------------------~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 176 (379)
.++..|+++.|..+++... ..+...++.+|.+++.+++.....+...+.++.++.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999999886311 2345668889999998888888888888999999998843
Q ss_pred C---ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchH---HHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 177 P---KESIRKEACWAVSNITAGNRQQIQAVIDANIFP---SLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 177 ~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~---~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
. ..+++..|+.+|.+++..+++.++.+.+.+... .+..+ ...+...+..+++.+.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 2 368999999999999999999999998876433 33333 3344456778899999974
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.23 E-value=3.6e-11 Score=114.10 Aligned_cols=267 Identities=13% Similarity=0.110 Sum_probs=180.2
Q ss_pred CChHHHHhhcCCC--CCCccc---------CchhH----HHHHhCCChHHHHhcC-CC--ChhHHHHHHHHHHHHhCCCC
Q psy664 10 GAVPVFIQLLLSP--HEDQVT---------HPSVE----TMSLDNNILYPLIDKP-KN--RLSMVRNSVWVLSNLCRGKT 71 (379)
Q Consensus 10 g~i~~L~~lL~s~--~~~v~~---------~~~~r----~~i~~~g~i~~Ll~lL-~~--~~~~~~~a~~~L~~l~~~~~ 71 (379)
+.+|.|+..+.++ +..+++ ...++ .... ..+++.++..+ +. +..++..+++++.++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678888888877 665655 11110 0111 12556666767 44 68889999999999764311
Q ss_pred CC-CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q psy664 72 PP-PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNI 150 (379)
Q Consensus 72 ~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl 150 (379)
.. ........+++.+.+.+.+++++++..++++|..++...++.....+..++++.++..+.+.++.++..|+..+..+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 00 01111233577778888888999999999999999865443322222226788888888899999999999999988
Q ss_pred hcCCc------------------hhhHHH--hhcCcHHHHHHhhcCC-------ChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 151 VTGDD------------------QQTQVI--LNCSALMCLLHLIQSP-------KESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 151 ~~~~~------------------~~~~~~--~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
+.... .....+ .-..++|.+.+.+... +..+|..|+.++..++...++. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~ 363 (462)
T 1ibr_B 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (462)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---H
T ss_pred HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---H
Confidence 75310 000000 0124567777777432 3579999999999987644321 1
Q ss_pred HhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 204 IDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
+ ..+++.+...+.+.+..+|..|+++++.++....++...... ..+++.++..|.++++.++..|+++|++++....
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 1 246777778888889999999999999997533322211111 4578899999999999999999999999998654
No 61
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.22 E-value=8.1e-10 Score=113.36 Aligned_cols=307 Identities=13% Similarity=0.100 Sum_probs=203.6
Q ss_pred CChHHHHhhcCCC--CCCccc---------Cchh-HHHH--HhCCChHHHHhcC-CC--ChhHHHHHHHHHHHHhCCCCC
Q psy664 10 GAVPVFIQLLLSP--HEDQVT---------HPSV-ETMS--LDNNILYPLIDKP-KN--RLSMVRNSVWVLSNLCRGKTP 72 (379)
Q Consensus 10 g~i~~L~~lL~s~--~~~v~~---------~~~~-r~~i--~~~g~i~~Ll~lL-~~--~~~~~~~a~~~L~~l~~~~~~ 72 (379)
.++|.|+.++.++ +..+++ ...+ .+.+ .-..+++.+...+ +. +..++..+++++..++..-..
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777776 555544 1111 0001 0122344555555 43 577888999999998754211
Q ss_pred C-CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhh
Q psy664 73 P-PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151 (379)
Q Consensus 73 ~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~ 151 (379)
. ........+++.+...+.+++.+++..++.+|..++...+......+...+++.++..+.+.++.++..|+..+.+++
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 1 111112347888888888889999999999999998655544444454478899999888889999999999999887
Q ss_pred cCCc---------------------hhhHHHhhcCcHHHHHHhhcC-------CChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 152 TGDD---------------------QQTQVILNCSALMCLLHLIQS-------PKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 152 ~~~~---------------------~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
.... ....... ..++|.+.+.+.. .+..+|+.|..++..++....+. +
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 5310 0000011 2456777777742 34689999999999987543321 1
Q ss_pred HhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHH
Q psy664 204 IDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 283 (379)
+ ..+++.+...+.+.+..+|..|+++++++.....++...... ..+++.++..+.++++.++..++++|.+++.....
T Consensus 364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 1 145666777777889999999999999997544434333322 34688999999999999999999999999987543
Q ss_pred hhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 284 EAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 284 ~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
... ..++...+ +..+...+.++ +.++..|.+.+.++...
T Consensus 442 ~~~----~~~~l~~~-----l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 442 AAI----NDVYLAPL-----LQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp GTS----STTTHHHH-----HHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred hcc----cHHHHHHH-----HHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 210 11222222 56666666664 88999999888887754
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.14 E-value=1.1e-09 Score=112.26 Aligned_cols=301 Identities=12% Similarity=0.068 Sum_probs=201.1
Q ss_pred HHhhcCCCCCCccc------CchhHHHHH---hCCChHHHHhcC-CC--ChhHHHHHHHHHHHHhCCCCCCCChHhHhhh
Q psy664 15 FIQLLLSPHEDQVT------HPSVETMSL---DNNILYPLIDKP-KN--RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPA 82 (379)
Q Consensus 15 L~~lL~s~~~~v~~------~~~~r~~i~---~~g~i~~Ll~lL-~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 82 (379)
+++.|.+++..+ . ..-.+...- -..+++.|+..+ +. +..++..++.+|..++..-.+..-......+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 777787776666 4 111111110 123456666666 66 7888899999999998652111011234567
Q ss_pred HHHHHHhhcCC--ChHHHHHHHHHHHHhcCCChHHHH-HHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 83 LACLSRLLFHA--DPDVLADACWAISYLSDGPNEKIQ-AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 83 l~~L~~lL~~~--d~~v~~~a~~aL~~l~~~~~~~~~-~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
++.+.+.+.++ +.+++..++.++..++..-..... ......+++.+...+.+++..++..++++++.++...+....
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88888888876 689999999999988754322211 011123677788888888999999999999999875554444
Q ss_pred HHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChH---------------------HHHHHHhcCchHHHHHHHHh
Q psy664 160 VILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ---------------------QIQAVIDANIFPSLIEILQK 218 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~---------------------~~~~~~~~~~i~~Li~ll~~ 218 (379)
..+...+++.+...+.+.++.++..|++.+.+++..... .....+ ..+++.++..+..
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~ 332 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTK 332 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhc
Confidence 444457889998888888899999999999988643210 011111 2456667777642
Q ss_pred -------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCc
Q psy664 219 -------AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSV 291 (379)
Q Consensus 219 -------~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~ 291 (379)
.+..+|+.|..++..++...... ++. .+++.+...+.+++..++..++++++.+.......
T Consensus 333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~----~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~------- 400 (876)
T 1qgr_A 333 QDENDDDDDWNPCKAAGVCLMLLATCCEDD----IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS------- 400 (876)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHHHHHHGGG----GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-------
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCcHh----hHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-------
Confidence 34578999999998876322111 111 34666777788889999999999999988643211
Q ss_pred chHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 292 NPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 292 ~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
.+...+ ...+..+...+.++++.|+..|...+.+|...
T Consensus 401 -~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 401 -QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp -HHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 011222 23477888888999999999999999988865
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.08 E-value=7.3e-10 Score=117.98 Aligned_cols=270 Identities=11% Similarity=0.061 Sum_probs=186.4
Q ss_pred hHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q psy664 42 LYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120 (379)
Q Consensus 42 i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~ 120 (379)
++.++.-+ ++|..++..|..-|.+....+...........+++.+.+.+.++++.+|..|+.+|+.++...++. .
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~- 83 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---Q- 83 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---H-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---H-
Confidence 45566666 889999999998888877654222222345678999999999999999999999999998764431 1
Q ss_pred hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchh-----hHHHhhcCcHHHHHHhhc-CCChhhHHHHHHHHHHhhc
Q psy664 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQ-----TQVILNCSALMCLLHLIQ-SPKESIRKEACWAVSNITA 194 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~-----~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l~nl~~ 194 (379)
-..+++.++..+.++++.++..|+.+|+.++...... ...-.-..++|.|...+. +++..++..|+.+++.++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 1246788889898999999999999999998543322 011122357899999998 5778999999999999875
Q ss_pred CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC-CHHHHHHHHHH
Q psy664 195 GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL-DAKIIQVALNG 273 (379)
Q Consensus 195 ~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~ 273 (379)
..++.+.... ..+++.++..+.+.++.+|+.|+.+++.++....... . ..+++.++..|... +..++..++.+
T Consensus 164 ~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~-~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 164 RQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----F-VDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------C-TTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----H-HHHHHHHHHHhccCCchhHHHHHHHH
Confidence 2222111111 2466777777888889999999999999985443322 1 23467777776553 34577778899
Q ss_pred HHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 274 LENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 274 L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
+..++...+.. ..++.. ..+..+...+.++++++++.|...+..+...
T Consensus 238 l~~l~~~~~~~------~~~~l~-----~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 238 IAAISRQAGHR------IGEYLE-----KIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHSSGG------GTTSCT-----THHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHH------HHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 99888765432 111211 2355666666777888888888777766554
No 64
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.05 E-value=1.2e-08 Score=84.51 Aligned_cols=226 Identities=17% Similarity=0.155 Sum_probs=170.3
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhH
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQ 159 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~ 159 (379)
.+.+..+..+|+..|+.++..++.+|..+....+.......-..+++.++.++.++++.+...|+++|+.+..+.+-..+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45788999999999999999999999988866444444444456899999999999999999999999999987554433
Q ss_pred HHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC
Q psy664 160 VILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 160 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~ 239 (379)
.+. .+...+..++.++++-++.+|+..++-+--.+.. .+++..+..++.+.+.+++..+..++.|+.....
T Consensus 112 ~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 332 3567788999999999999999999987322211 1466788888988999999999999999975332
Q ss_pred -HHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhh-cCCCHH
Q psy664 240 -PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQ-SHENIE 317 (379)
Q Consensus 240 -~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~-~~~~~~ 317 (379)
++.. .+++.-+-++|+++|+.+++.|+.++..++...-. +....-+ .+......++. -...+.
T Consensus 183 D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~~~~~~--~~~~~~v~~l~~~~~~~~ 247 (265)
T 3b2a_A 183 DSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------ENVKIEL--LKISRIVDGLVYREGAPI 247 (265)
T ss_dssp SCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SCCHHHH--HHHHHHHHHGGGCSSCHH
T ss_pred CHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------HhHHHHH--HHHHHHHHHHHHhcCChh
Confidence 2221 25677888899999999999999999999976321 1111111 23344456666 567788
Q ss_pred HHHHHHHHHHHh
Q psy664 318 IYQKAFDIIEHY 329 (379)
Q Consensus 318 v~~~a~~il~~~ 329 (379)
++.+|-.+-+.+
T Consensus 248 ~~~ka~~v~~~l 259 (265)
T 3b2a_A 248 IRLKAKKVSDLI 259 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888766543
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.00 E-value=4.8e-08 Score=96.08 Aligned_cols=287 Identities=11% Similarity=0.094 Sum_probs=189.0
Q ss_pred ChHHHHhhcCCCCCCccc---------CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHh
Q psy664 11 AVPVFIQLLLSPHEDQVT---------HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA 80 (379)
Q Consensus 11 ~i~~L~~lL~s~~~~v~~---------~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 80 (379)
+.+..++++.|++...+. .....+.++- ++..+.+=+ ++++.++..|..+++++... ....
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L--~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-------e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL--INNAIKNDLASRNPTFMGLALHCIANVGSR-------EMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH--HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-------HHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH--HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-------HHHH
Confidence 456667777777665554 1111222211 233444455 77888888999999998542 2556
Q ss_pred hhHHHHHHhh--cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhh
Q psy664 81 PALACLSRLL--FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 81 ~~l~~L~~lL--~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
.++|.+.+++ .+.++-|+..|+.++..+....++... ..++++.+.++|.++++.++..|+.++..++..++...
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 8899999999 888999999999999999875554322 24889999999999999999999999999987654321
Q ss_pred HHHhhcCcHHHHHHhhcCC-------------ChhhHHHHHHHHHHhhcC-ChHHHHHHHhcCchHHHHHHH--------
Q psy664 159 QVILNCSALMCLLHLIQSP-------------KESIRKEACWAVSNITAG-NRQQIQAVIDANIFPSLIEIL-------- 216 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~-------------~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~~i~~Li~ll-------- 216 (379)
...+ ..++..|.+++... ++..+......++.++.. +++....+.+ +++.++..+
T Consensus 223 ~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 223 KTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK 299 (621)
T ss_dssp TTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred HHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence 1010 12233344444322 567888888888887653 3444443332 344444332
Q ss_pred -HhC--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcch
Q psy664 217 -QKA--EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNP 293 (379)
Q Consensus 217 -~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 293 (379)
++. ...+..+|+.++..+. .+++.... ++..|..+|.+.+++++..++..|..++...+.
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---------- 362 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHD--SEPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS---------- 362 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CCHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT----------
T ss_pred ccccchHHHHHHHHHHHHHhcC--CcHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc----------
Confidence 222 3488899999999873 44443332 367888899889999999999999998864321
Q ss_pred HHHHHHHhccHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC
Q psy664 294 YVVLIEECYGLDKIEFLQS-HENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 294 ~~~~i~~~g~l~~l~~l~~-~~~~~v~~~a~~il~~~~~~ 332 (379)
...+.+ ....+...+. +++..|+.+|..++..+.+.
T Consensus 363 -~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 363 -HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp -HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred -HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 112222 2445555555 77788888888887777643
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.99 E-value=1.2e-09 Score=116.32 Aligned_cols=260 Identities=13% Similarity=0.168 Sum_probs=180.1
Q ss_pred hHHHHhhcCCCCCCccc--CchhHHHHH----------hCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHh
Q psy664 12 VPVFIQLLLSPHEDQVT--HPSVETMSL----------DNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAK 78 (379)
Q Consensus 12 i~~L~~lL~s~~~~v~~--~~~~r~~i~----------~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 78 (379)
++.|+.-+.++|.++|. -......+. ...+++.+++.| +.+..++..|+.+|..++..-.+ ..
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~----~~ 83 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE----YQ 83 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH----HH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH----HH
Confidence 56677667787776665 111211111 113567788888 88899999999999999975421 34
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHH-----HHHHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhc
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK-----IQAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~-----~~~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~ 152 (379)
...+++.+...+.++++.+|..++.+|+.++...... ...-.-..++|.|+..+. ++++.++..|+.+++.++.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 5678999999999889999999999999888443221 011122357899999998 5889999999999999985
Q ss_pred CCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCc-HHHHHHHHHHH
Q psy664 153 GDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAE-FKTRKEAAWAI 231 (379)
Q Consensus 153 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~-~~v~~~a~~~l 231 (379)
..+..... .-..+++.+...+.++++.+|+.|+.+++.++...++.. -..+++.++..+...+ ..++..++.++
T Consensus 164 ~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 164 RQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 32221110 113467778888888889999999999999986544321 2356888888887653 46777888888
Q ss_pred HHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 232 TNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 232 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
..+..........++ ..+++.+...+.++++.++..++.++..++...+
T Consensus 239 ~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 887643221111111 3568888888888888999999999999887543
No 67
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.94 E-value=1.1e-08 Score=88.53 Aligned_cols=183 Identities=14% Similarity=0.217 Sum_probs=139.8
Q ss_pred HHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHh
Q psy664 44 PLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVID 121 (379)
Q Consensus 44 ~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~ 121 (379)
.+.+.+ +.+...++.++..|..++........ .....+++.|...+. +.+..++..++.+++.++..-...... .-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~-~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN-GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC-CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 355555 78899999999999999876312111 123578899999994 899999999999999999543222222 22
Q ss_pred cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChHH-
Q psy664 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAG-NRQQ- 199 (379)
Q Consensus 122 ~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~- 199 (379)
..+++.++..+.+++..++..|..+|..++.... . ..+++.+...+.+.++.+|..++..++.+... .++.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 3479999999999999999999999999986432 1 13678899999999999999999999996543 3332
Q ss_pred HHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 200 ~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
....+. .++|.+..++.+.++++|..|..++..+..
T Consensus 170 ~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 222222 689999999999999999999999999864
No 68
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.93 E-value=2.2e-09 Score=92.90 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=143.8
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhh
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
..+-+.+.+.+.+.+...|..++..|..+..+.+......+ ..+++.|...+. +++..++..|+.+++.++..-....
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 34445688888999999999999999988765211110001 245778888884 8999999999999999996432222
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
.. .-..++|.+...+.+++..+|..|+.++.+++.... .. .+++.+...+.+.++.+|.+++..|..++...
T Consensus 93 ~~-~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 93 SN-YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HH-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 21 123478999999999999999999999999876432 11 36788888899999999999999999976554
Q ss_pred CHHH--HHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 239 TPDQ--IRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 239 ~~~~--~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
.++. ..++ ..+++.+..+|.+.++++|..+..++..++....
T Consensus 165 ~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 165 QPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 3331 2222 2468999999999999999999999999887543
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.84 E-value=9.3e-08 Score=79.16 Aligned_cols=187 Identities=16% Similarity=0.149 Sum_probs=147.8
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHH
Q psy664 123 GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQA 202 (379)
Q Consensus 123 g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 202 (379)
+.+..|..+|...|+.++.+++.+|..+....+.......-..++|.++.++.+.+..+.-.|..++..+..+.+-.-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 56888999999999999999999999999875555555555678999999999999999999999999988754422221
Q ss_pred HHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 203 VIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 203 ~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
+. .+...+.+++.++++-.+.+|+-.++.+--..... +++..+.+++.+.|.+++..++.++.++....+
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~--------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK--------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH--------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 21 24567788888899999999999999872222111 347788889999999999999999999988664
Q ss_pred HhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
+.. .+ .+.++-+..+++++|+.+.++|..+++..++.
T Consensus 183 D~~-------i~------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DSG-------HL------TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SCC-------CG------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHH-------HH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 321 11 22356678899999999999999999999886
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.83 E-value=1.9e-06 Score=68.55 Aligned_cols=217 Identities=14% Similarity=0.164 Sum_probs=165.8
Q ss_pred HhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-CChHHHHHHHHHHHHhcCCChH
Q psy664 37 LDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-ADPDVLADACWAISYLSDGPNE 114 (379)
Q Consensus 37 ~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~ 114 (379)
.+..+++.++.+| ++-..++.||..++..++..-. ......+..|+.+++. +--........+++.++.-.++
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 4556788888888 6667899999999999998642 2356677778877764 4467767888999999976665
Q ss_pred HHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy664 115 KIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA 194 (379)
Q Consensus 115 ~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~ 194 (379)
... +.+|.+..-.+-.+++++...-.+|..|+..++..... ++.-+..++.+++..=+..|+..++-+..
T Consensus 104 ~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 544 46788888888899999999999999999888766553 44558889998887777777777776654
Q ss_pred CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHH
Q psy664 195 GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGL 274 (379)
Q Consensus 195 ~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 274 (379)
.....+. .++|.|+.+|++.|.-+|..|+.+|.++. ..++.. +.+ +..-+.-+++....+...+-.+|
T Consensus 174 n~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA-~~npkl-Rki-----i~~kl~e~~D~S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKL-RKV-----VIKRLEELNDTSSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHH-TSCHHH-HHH-----HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred cCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHH-HcCHHH-HHH-----HHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444332 67899999999999999999999999987 556653 333 33344456777788888899999
Q ss_pred HHHHHH
Q psy664 275 ENILKL 280 (379)
Q Consensus 275 ~~l~~~ 280 (379)
+.++-.
T Consensus 242 ~rl~l~ 247 (253)
T 2db0_A 242 SRLLLL 247 (253)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 888753
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.82 E-value=1.5e-08 Score=91.65 Aligned_cols=237 Identities=14% Similarity=0.067 Sum_probs=113.6
Q ss_pred HHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHh
Q psy664 43 YPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121 (379)
Q Consensus 43 ~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~ 121 (379)
..|.+=+ ++++-++..|..+++++...+ ....+.+.+.+.|.+.++-|+..|+.+...+....++..+
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~---- 175 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQITDST-------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK---- 175 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCTT-------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH----
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcCCCHH-------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH----
Confidence 3344444 666666667777777776543 3456667777777777777777777777777766554322
Q ss_pred cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC---ChhhHHHHHHHHHHhhcCC-h
Q psy664 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP---KESIRKEACWAVSNITAGN-R 197 (379)
Q Consensus 122 ~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~l~nl~~~~-~ 197 (379)
+++..+-+++.+.++.++..|+.++..+...+.. .+..++.-+... ++..+...++.++.++..+ +
T Consensus 176 -~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~ 245 (355)
T 3tjz_B 176 -RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG 245 (355)
T ss_dssp -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------
T ss_pred -HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch
Confidence 5677777777777777777777777777654311 222333333221 2333333333333332222 1
Q ss_pred HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
+ ....+++.+...+++.++.|..+|+.+|..+.. .+.. +. ..++..|..++.++++.++..++..|..+
T Consensus 246 ~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 246 S-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp ----------------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred h-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 1 122455666666777889999999999999742 1111 11 23466777888889999999999999988
Q ss_pred HHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHH
Q psy664 278 LKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDII 326 (379)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il 326 (379)
....+. .+..+ -..|++++.++|..|...|...|
T Consensus 315 ~~~~P~-------------~v~~~--n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 315 AMKHPS-------------AVTAC--NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------------------------------------------------
T ss_pred HHHCcH-------------HHHHH--HHHHHHHccCCcHhHHHHHHHHh
Confidence 876543 23332 35678899999998888776543
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.81 E-value=6.7e-08 Score=83.79 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=135.9
Q ss_pred CCChhHHHHHHHHHHH-HhCCCCCCCC--hHhHhhhHHHHHHhh-cCCChHHHHHHHHHHHHhcCCCh-HHHH-HHHhcC
Q psy664 50 KNRLSMVRNSVWVLSN-LCRGKTPPPD--FAKVAPALACLSRLL-FHADPDVLADACWAISYLSDGPN-EKIQ-AVIDAG 123 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~-l~~~~~~~~~--~~~~~~~l~~L~~lL-~~~d~~v~~~a~~aL~~l~~~~~-~~~~-~~~~~g 123 (379)
+.+..-+..+.-.|.. ++.+. +... ......++..|.+.+ ++.+..++..|+.+++.++.+-. .... ... .-
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~-~~ 104 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV-SL 104 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-HH
T ss_pred cCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH-HH
Confidence 7788888999999999 87653 2211 112246788888999 78899999999999999985321 1111 111 23
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh---HHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR---QQI 200 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~ 200 (379)
+++.++..+.+....++..+..++-.++...+.....-.-..+++.|...|+++++.+|..++.+|..++...+ ...
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 68999999999999999999999988886432111000011357788889999999999999999999875443 444
Q ss_pred HHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 201 QAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 201 ~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
...+...++|.+..++.+.++++|..|..+++.++
T Consensus 185 ~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44443589999999999999999999999999876
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.81 E-value=3.5e-06 Score=67.03 Aligned_cols=215 Identities=14% Similarity=0.182 Sum_probs=163.8
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchhh
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQT 158 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~~ 158 (379)
+.++..++.+|.++-+.++.+|+..+..++...++..... +..|+.+++. ..........+++|.++...++..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 4688899999988779999999999999998887766644 4667777654 556676788899999987666555
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~ 238 (379)
. +.+|.+..-+.-.+++++.....++..++..+|+... +++..+..++.+.+..=+..|+..|+.+-
T Consensus 106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alG--- 172 (253)
T 2db0_A 106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMG--- 172 (253)
T ss_dssp H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCC---
T ss_pred H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHh---
Confidence 4 5678888888888999999999999999988887655 55677888888888666777776666542
Q ss_pred CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHH
Q psy664 239 TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEI 318 (379)
Q Consensus 239 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v 318 (379)
..+.+++. -.++.|..+|.+.|.-++..+..+|.+++...++.. ..+ .++++ =.++.++.|
T Consensus 173 -en~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklR----------kii-----~~kl~-e~~D~S~lv 233 (253)
T 2db0_A 173 -ENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLR----------KVV-----IKRLE-ELNDTSSLV 233 (253)
T ss_dssp -TTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHH----------HHH-----HHHHH-HCCCSCHHH
T ss_pred -ccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHH----------HHH-----HHHHH-HhcCcHHHH
Confidence 23333432 348999999999999999999999999998776542 222 23333 356677888
Q ss_pred HHHHHHHHHHhcC
Q psy664 319 YQKAFDIIEHYFG 331 (379)
Q Consensus 319 ~~~a~~il~~~~~ 331 (379)
.++...-|.++.-
T Consensus 234 ~~~V~egL~rl~l 246 (253)
T 2db0_A 234 NKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776654
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.73 E-value=2.4e-09 Score=83.35 Aligned_cols=118 Identities=22% Similarity=0.171 Sum_probs=80.1
Q ss_pred CChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHH
Q psy664 40 NILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQA 118 (379)
Q Consensus 40 g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~ 118 (379)
..++.++.+| +++..++..++|+|..+.. + .++.|.++|+++++.++..++|+|+++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~---~---------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD---E---------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS---T---------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc---h---------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4456667777 6677777777777765421 1 14778888888888888888888888763
Q ss_pred HHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHH
Q psy664 119 VIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSN 191 (379)
Q Consensus 119 ~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~n 191 (379)
...++.|+.+++++++.++..|+++|+++.. ...++.|..+++++++.++..|+++|++
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1246777888888888888888888887751 2356778888887788888888888764
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.73 E-value=8e-08 Score=83.30 Aligned_cols=197 Identities=8% Similarity=0.048 Sum_probs=141.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHH-hcCCChHHHHHHHh-cCcHHHHHHhh-cCCChHHHHHHHHHHHHhhcCCc--hhh
Q psy664 84 ACLSRLLFHADPDVLADACWAISY-LSDGPNEKIQAVID-AGVCRRLVELL-MHDQHKVVSAALRAVGNIVTGDD--QQT 158 (379)
Q Consensus 84 ~~L~~lL~~~d~~v~~~a~~aL~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~i~~~al~~L~nl~~~~~--~~~ 158 (379)
+.+...+.+.++.-|..++..|.. +..+.++......+ ..++..|...+ ++.+..++..|+.+|+.++.+-. ...
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 346677789999999999999999 87442221100001 13577788888 78899999999999999996432 222
Q ss_pred -HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Q psy664 159 -QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG 237 (379)
Q Consensus 159 -~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~ 237 (379)
... .-++|.++..+.+..+.|+..+..++..++...+.....-.-..+++.|+..+++..+.+|.+++.+|..++..
T Consensus 99 ~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 99 KDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 222 23688999999988899999999999988753311000000013677888889988999999999999998854
Q ss_pred CCH--HHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 238 GTP--DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 238 ~~~--~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
... ......+...+++.+..++.+.++.+|..+..++..++...+
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 332 333222224679999999999999999999999999987654
No 76
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.68 E-value=2.4e-06 Score=84.07 Aligned_cols=255 Identities=11% Similarity=0.076 Sum_probs=178.2
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHH
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV 119 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~ 119 (379)
+....++++ +++...++.+.-.+..++..+. ....-++..+.+=+.++++.++..|+.+++++.. ++..
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-----e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~--- 144 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-----ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--REMA--- 144 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-----HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH---
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH---
Confidence 456667777 8888888888888888886541 2223456777888889999999999999999964 2322
Q ss_pred HhcCcHHHHHHhh--cCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy664 120 IDAGVCRRLVELL--MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197 (379)
Q Consensus 120 ~~~g~i~~L~~lL--~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 197 (379)
..+++.+.+++ .+.++.++..|+-++.++...+++.. ...++++.+.++|.+.++.++..|+.++..++..++
T Consensus 145 --~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 145 --EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp --HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred --HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 24678889999 88999999999999999997554432 224889999999999999999999999999987666
Q ss_pred HHHHHHHhcCchHHHHHHHH----hC-------------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc
Q psy664 198 QQIQAVIDANIFPSLIEILQ----KA-------------EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT 260 (379)
Q Consensus 198 ~~~~~~~~~~~i~~Li~ll~----~~-------------~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~ 260 (379)
+... .++|.+++.|. .+ ++-.+...+..+..+....+++....+.+ +++.++..+.
T Consensus 220 ~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~ 292 (621)
T 2vgl_A 220 EEFK-----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ 292 (621)
T ss_dssp HHHT-----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence 5322 34444444333 22 57888888888888764345555555543 2444443321
Q ss_pred ---------cCC--HHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy664 261 ---------LLD--AKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 261 ---------~~d--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~ 329 (379)
+.+ ..+...+..++..+-. .. ..+. .++..|..++.+++++++..|...|..+
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-----------~~---~~~~--~~~~~L~~~L~~~~~niry~aL~~l~~l 356 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDS-----------EP---NLLV--RACNQLGQFLQHRETNLRYLALESMCTL 356 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-----------CH---HHHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCC-----------cH---HHHH--HHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 112 2566666666555421 11 1111 2367788888889999999999999888
Q ss_pred cCCC
Q psy664 330 FGSE 333 (379)
Q Consensus 330 ~~~~ 333 (379)
....
T Consensus 357 ~~~~ 360 (621)
T 2vgl_A 357 ASSE 360 (621)
T ss_dssp TTCT
T ss_pred Hhcc
Confidence 7654
No 77
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.65 E-value=5.4e-08 Score=75.54 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=85.8
Q ss_pred hCCChHHHHhhcCCCCCCccc--CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHH
Q psy664 8 DAGAVPVFIQLLLSPHEDQVT--HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALA 84 (379)
Q Consensus 8 ~~g~i~~L~~lL~s~~~~v~~--~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 84 (379)
....++.++.+|++++..++. -.... . +....++.|+++| +++..++..++|+|.++.. ...++
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~-~-~~~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~ 76 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALS-R-MGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVE 76 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTT-S-CSSTTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHH-H-hCchHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHH
Confidence 446788999999999888877 00000 0 1122368999999 8899999999999998753 34789
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHh
Q psy664 85 CLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNI 150 (379)
Q Consensus 85 ~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl 150 (379)
.|..+++++++.++..++|+|+.+.. ...++.|..+++++++.++..|.++|++|
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999862 23578899999999999999999998754
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.63 E-value=4.4e-06 Score=83.97 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHh--cCCChHHHHHHHhcCcHHHHHH
Q psy664 53 LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL--SDGPNEKIQAVIDAGVCRRLVE 130 (379)
Q Consensus 53 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l--~~~~~~~~~~~~~~g~i~~L~~ 130 (379)
..++..|+..|.....+.. ...+++.|..++.+++..++..|+.+|+.+ ..++.+.. ..|++
T Consensus 451 ~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai---------~~LL~ 514 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI---------HDMFT 514 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH---------HHHHH
Confidence 4566788888988776652 235778888888877777788888888866 34443333 33333
Q ss_pred h-hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh-cCCChhhHHHHHHHHHHhhc--CChHHHHHHHhc
Q psy664 131 L-LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI-QSPKESIRKEACWAVSNITA--GNRQQIQAVIDA 206 (379)
Q Consensus 131 l-L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~ 206 (379)
. ....+..+++.+...||.+..+.++.. +.+++.| ...++.+|..++.+++--.+ ++...+
T Consensus 515 ~~~e~~~e~vrR~aalgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI------ 579 (963)
T 4ady_A 515 YSQETQHGNITRGLAVGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV------ 579 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH------
T ss_pred HHhccCcHHHHHHHHHHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH------
Confidence 3 345688899999999999988776554 4444555 45678999999998886554 444433
Q ss_pred CchHHHHHH-HHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHh-hccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 207 NIFPSLIEI-LQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCEL-LTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 207 ~~i~~Li~l-l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~l-L~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
+.|++. ..+.+..+|+.|+.+|+.+. .++++ .++.++.+ +++.|+.+|..+..+|+.+....+..
T Consensus 580 ---q~LL~~~~~d~~d~VRraAViaLGlI~-~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~ 646 (963)
T 4ady_A 580 ---KRLLHVAVSDSNDDVRRAAVIALGFVL-LRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ 646 (963)
T ss_dssp ---HHHHHHHHHCSCHHHHHHHHHHHHHHT-SSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH
T ss_pred ---HHHHHHhccCCcHHHHHHHHHHHHhhc-cCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH
Confidence 333333 34557889999999999876 34432 35555654 45689999999999999876432211
Q ss_pred hhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 285 AKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 285 ~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
..++.|..+.++++..|++.|...+..+...
T Consensus 647 -----------------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 647 -----------------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp -----------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred -----------------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 1256788889999999999888777766554
No 79
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.62 E-value=1.4e-06 Score=76.84 Aligned_cols=191 Identities=9% Similarity=0.086 Sum_probs=146.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q psy664 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVI 204 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 204 (379)
+..+++.|.+.+...++.++.-|..+...+......+++.+++..|++.....+..++..++.++.++.. ......-++
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchh
Confidence 4456667777888889999999999777778888999999999999999999999999999999999865 344454444
Q ss_pred -hcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHH--------H--cCChHHHHHhhc---cCCHHHHHHH
Q psy664 205 -DANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLI--------Q--QGCIEPFCELLT---LLDAKIIQVA 270 (379)
Q Consensus 205 -~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~--------~--~~~i~~L~~lL~---~~d~~v~~~a 270 (379)
...++..+..++.+.+..+.+.|+..|..++.... .....+. + ...++.++.+|. ..|.+++.++
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 44688999999998889999999999999885432 1111111 1 124788999997 6789999999
Q ss_pred HHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCC--CHHHHHH
Q psy664 271 LNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE--NIEIYQK 321 (379)
Q Consensus 271 l~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~--~~~v~~~ 321 (379)
+..|..++...++... ...+...+++.|.-..+.+.+... ++++.++
T Consensus 278 mtLIN~lL~~apd~d~----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDS----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHH----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhH----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9999988888664321 335778888888877888877655 5554443
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.55 E-value=2.6e-05 Score=70.48 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=131.3
Q ss_pred HHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCCh
Q psy664 58 NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQH 137 (379)
Q Consensus 58 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~ 137 (379)
....+|..+..+. ..+ ......+.+.+++++.++|..++.-....+..++..+++.+ + ++..+.+=++++++
T Consensus 47 ~l~kll~l~~~G~-~f~-~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i---L---v~Nsl~kDl~~~N~ 118 (355)
T 3tjz_B 47 ILTKILYLINQGE-HLG-TTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI---I---VTSSLTKDMTGKED 118 (355)
T ss_dssp HHHHHHHHHHHTC-CCC-HHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG---G---GHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHCCC-CCc-hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH---H---HHHHHHhhcCCCcH
Confidence 5667777777774 332 33345678888999999999999999988988887654432 1 46778888899999
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHH
Q psy664 138 KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ 217 (379)
Q Consensus 138 ~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~ 217 (379)
-++-.|+++|++|... +..+ .+.+.+.+.+.+.++.||+.|+.+...+....++.++ ++++.+-+++.
T Consensus 119 ~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~ 186 (355)
T 3tjz_B 119 SYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAAS 186 (355)
T ss_dssp HHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTT
T ss_pred hHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhc
Confidence 9999999999999753 3333 3467788999999999999999999999888887554 78999999999
Q ss_pred hCcHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy664 218 KAEFKTRKEAAWAITNATSGGTPDQIRY 245 (379)
Q Consensus 218 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 245 (379)
+.++-++..|+.++..+. ..+.....+
T Consensus 187 d~n~~V~~~Al~lL~ei~-~~d~~a~~k 213 (355)
T 3tjz_B 187 SDNIMVQYHALGLLYHVR-KNDRLAVSK 213 (355)
T ss_dssp CSSHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred CCCccHHHHHHHHHHHHH-hhchHHHHH
Confidence 999999999999999986 445444333
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.46 E-value=5.6e-05 Score=70.05 Aligned_cols=309 Identities=16% Similarity=0.149 Sum_probs=182.0
Q ss_pred hhCCChHHHHhhcCC-CCCCccc------------Cc---hhHHHHHhCCCh-HHHHhcC-CCChh-HHHHHHHHHHHHh
Q psy664 7 IDAGAVPVFIQLLLS-PHEDQVT------------HP---SVETMSLDNNIL-YPLIDKP-KNRLS-MVRNSVWVLSNLC 67 (379)
Q Consensus 7 ~~~g~i~~L~~lL~s-~~~~v~~------------~~---~~r~~i~~~g~i-~~Ll~lL-~~~~~-~~~~a~~~L~~l~ 67 (379)
.+..++..++.+|+. .+.++.+ ++ .....+.+.... ..+.... ..++. .+..++.+++.++
T Consensus 74 ~~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 74 VNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 344567888888865 4445544 22 221222222221 1122222 33433 4456666666665
Q ss_pred CCCCCCCChHhHhhhHH--HHHHhhcC-CChHHHHHHHHHHHHhcCCChHHHHHHHhcC--cHHHHHHhhcC--------
Q psy664 68 RGKTPPPDFAKVAPALA--CLSRLLFH-ADPDVLADACWAISYLSDGPNEKIQAVIDAG--VCRRLVELLMH-------- 134 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~-------- 134 (379)
... + .........+. -+...|.. ++.+.+.-++.+|..|...+ +.+..+.+.+ .++.++.+++.
T Consensus 154 ~~~-~-~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 154 QNG-L-HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp STT-T-CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred ccC-C-ccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence 433 2 22223333444 34444554 34555667788888887664 5777676542 46666544331
Q ss_pred -------C--ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcH--HHHHHhhcC-CChhhHHHHHHHHHHhhcCCh----H
Q psy664 135 -------D--QHKVVSAALRAVGNIVTGDDQQTQVILNCSAL--MCLLHLIQS-PKESIRKEACWAVSNITAGNR----Q 198 (379)
Q Consensus 135 -------~--~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~----~ 198 (379)
+ ..+++..++-|+.-++... ...+.+...++. +.|+.+++. ...+|.+-++.++.|+....+ .
T Consensus 231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence 1 3566888999999888654 455556555543 556666654 568899999999999877552 2
Q ss_pred HHH-HHHhcCchHHHHHHHHh---CcHHHHHHHHHHHHHH---------------------hcCC----C----HHHHHH
Q psy664 199 QIQ-AVIDANIFPSLIEILQK---AEFKTRKEAAWAITNA---------------------TSGG----T----PDQIRY 245 (379)
Q Consensus 199 ~~~-~~~~~~~i~~Li~ll~~---~~~~v~~~a~~~l~nl---------------------~~~~----~----~~~~~~ 245 (379)
.+. .++..++ +.++..|.. .|+++....-+....+ +... + .++...
T Consensus 310 ~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k 388 (480)
T 1ho8_A 310 VIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE 388 (480)
T ss_dssp HHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred HHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH
Confidence 233 3333455 445566654 3555543322211111 0110 0 011112
Q ss_pred HHH--cCChHHHHHhhcc----------CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcC
Q psy664 246 LIQ--QGCIEPFCELLTL----------LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH 313 (379)
Q Consensus 246 l~~--~~~i~~L~~lL~~----------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~ 313 (379)
+.+ ..++..|+++|.+ .|+.+...||.=|+.+++..+.. ...+++.|+-+.+.+|++|
T Consensus 389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g----------r~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES----------IDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH----------HHHHHHHSHHHHHHHHTSC
T ss_pred HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch----------hHHHHHcCcHHHHHHHhcC
Confidence 211 2456788888873 47788889999999999887655 3688899999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q psy664 314 ENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 314 ~~~~v~~~a~~il~~~~ 330 (379)
+|++|+..|...++++.
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998888763
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.45 E-value=1.7e-05 Score=79.75 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=75.8
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHH-hhcCCChhhHHHHHHHHHHhhcCChHHHHH
Q psy664 125 CRRLVELL-MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLH-LIQSPKESIRKEACWAVSNITAGNRQQIQA 202 (379)
Q Consensus 125 i~~L~~lL-~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 202 (379)
++.|++.+ .+.+..+++.|+.+||.|..++++ .++.++. ++++.++.+|..|+++++.++++++.
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---- 645 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---- 645 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----
Confidence 44444443 456788999999999998877643 3455555 44677899999999999999987763
Q ss_pred HHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC
Q psy664 203 VIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 203 ~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~ 239 (379)
..++..|..++++.+..|++.|+.+++.+....+
T Consensus 646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 1356677888899999999999999999874433
No 83
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.42 E-value=1.3e-05 Score=70.59 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=137.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc
Q psy664 85 CLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC 164 (379)
Q Consensus 85 ~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~ 164 (379)
.++.-|.+.+...+..++.-|..+-..+.+....++..+++..|+....+.+.+++..++++++++....+.....+...
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34455556777778899999998444445788889999999999999999999999999999999987655555555566
Q ss_pred CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhc----------CchHHHHHHHH---hCcHHHHHHHHHHH
Q psy664 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA----------NIFPSLIEILQ---KAEFKTRKEAAWAI 231 (379)
Q Consensus 165 ~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~----------~~i~~Li~ll~---~~~~~v~~~a~~~l 231 (379)
.++..+..++.+....|.+.|+.+|-.++..++.....+.++ ..++.|+.+|+ .+|.+++..|+..|
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 789999999998889999999999999887665444333221 24788999997 67999999998888
Q ss_pred HHHhcCCC-HH----HHHHHHHcCChHHHHHhhccC--CHHHHHH
Q psy664 232 TNATSGGT-PD----QIRYLIQQGCIEPFCELLTLL--DAKIIQV 269 (379)
Q Consensus 232 ~nl~~~~~-~~----~~~~l~~~~~i~~L~~lL~~~--d~~v~~~ 269 (379)
..++...+ .+ ....+-+.|+-..+...|... |+++++.
T Consensus 282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 77775544 23 222334455555666667653 6666655
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.36 E-value=1.6e-05 Score=73.66 Aligned_cols=225 Identities=18% Similarity=0.166 Sum_probs=147.8
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCChHhH--hhhHHHHHHhhc---------------CC--ChHHHHHHHHHHHHhcCCCh
Q psy664 53 LSMVRNSVWVLSNLCRGKTPPPDFAKV--APALACLSRLLF---------------HA--DPDVLADACWAISYLSDGPN 113 (379)
Q Consensus 53 ~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~---------------~~--d~~v~~~a~~aL~~l~~~~~ 113 (379)
...+..++.+|..|.+.+ +.+..+.. ...+|.++.++. ++ ..+++.+++.+++-++..++
T Consensus 182 ~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp HHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 344557888888888876 33333322 234666654433 11 25788999999999997764
Q ss_pred HHHHHHHhcCcH--HHHHHhhcC-CChHHHHHHHHHHHHhhcCCch----h-hHHHhhcCcHHHHHHhhcC--CChhhHH
Q psy664 114 EKIQAVIDAGVC--RRLVELLMH-DQHKVVSAALRAVGNIVTGDDQ----Q-TQVILNCSALMCLLHLIQS--PKESIRK 183 (379)
Q Consensus 114 ~~~~~~~~~g~i--~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~----~-~~~~~~~~~l~~L~~lL~~--~~~~v~~ 183 (379)
..+.+...++. +.|+..++. ..+++.+-++.++.|+...... . .+.++..++++.+-.+-.. .|+++..
T Consensus 261 -~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 -FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp -HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHH
T ss_pred -HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHH
Confidence 55556655543 566676665 6899999999999999976521 1 1233334555544444332 2455554
Q ss_pred HHHHHHHHhh---------------------cCChHHHH---------HHHhc--CchHHHHHHHHh----------CcH
Q psy664 184 EACWAVSNIT---------------------AGNRQQIQ---------AVIDA--NIFPSLIEILQK----------AEF 221 (379)
Q Consensus 184 ~a~~~l~nl~---------------------~~~~~~~~---------~~~~~--~~i~~Li~ll~~----------~~~ 221 (379)
..-.....+- .=+|-+.. .+.+. .++..|+++|.+ .|+
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 4433332221 11111111 11111 368899999974 478
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 222 KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 222 ~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
.+..-||.-|+.++ .+.|+....+-+.|+=+.++.+|.++|++|+.+|+.++..++.+
T Consensus 420 ~~laVAc~Digefv-r~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 420 IIIQVALNDITHVV-ELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHH-HHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHH-HHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999998 56677777777889999999999999999999999999998864
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.19 E-value=0.00016 Score=73.55 Aligned_cols=263 Identities=14% Similarity=0.165 Sum_probs=180.6
Q ss_pred CChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCC-hHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCC-ChHHH
Q psy664 40 NILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPD-FAKVAPALACLSRLLFHADPDVLADACWAISYLSDG-PNEKI 116 (379)
Q Consensus 40 g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~-~~~~~ 116 (379)
+++..|.+.+ +.... ..|+-++..||........ ....-+.+|.++....+.+..|+..|-.++..+... +++..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 4555666666 32222 8999999999976533222 233346788888888888899998888888766643 33332
Q ss_pred HHHHhcCcHHHHHHhhcCC-ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-
Q psy664 117 QAVIDAGVCRRLVELLMHD-QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA- 194 (379)
Q Consensus 117 ~~~~~~g~i~~L~~lL~~~-~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~- 194 (379)
..++|.|+..|.+. .++.+..|+.++..++...+.+... .-..++|.+...+.+..++|++.|..++..+|.
T Consensus 132 -----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 132 -----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL-RMPELIPVLSETMWDTKKEVKAAATAAMTKATET 205 (986)
T ss_dssp -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHH-hccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence 24689999998765 7999999999999999655443322 224689999999999999999999999999886
Q ss_pred -CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCC--CHHHHHHHHHcCChHHHHHhhccCCHHHHHHHH
Q psy664 195 -GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG--TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVAL 271 (379)
Q Consensus 195 -~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 271 (379)
++.+ + ..++|.|++.+.+++. .-+++..|+.-+.-. +......+ +|.|..-|......+.+.+.
T Consensus 206 ~~n~d-~-----~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~~-----~p~l~r~l~~~~~~~~r~~~ 272 (986)
T 2iw3_A 206 VDNKD-I-----ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSIM-----VPLLSRGLNERETGIKRKSA 272 (986)
T ss_dssp CCCTT-T-----GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHHH-----HHHHHHHHTSSSHHHHHHHH
T ss_pred CCCcc-h-----hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHHH-----HHHHHhhhccCcchhheeeE
Confidence 3333 1 2678999999988743 445666666533222 22222222 67777778888888999999
Q ss_pred HHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHh-hcCCCHHHHHHHHHHHHHhcCC
Q psy664 272 NGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFL-QSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 272 ~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l-~~~~~~~v~~~a~~il~~~~~~ 332 (379)
-.+.||++..++-.. ..+|...+ +..++.. -...++++++.|...+..+...
T Consensus 273 ~~~~n~~~lv~~~~~----~~~f~~~l-----~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 273 VIIDNMCKLVEDPQV----IAPFLGKL-----LPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHTTCCCHHH----HHHHHTTT-----HHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhcCCHHH----Hhhhhhhh-----hhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 999999987654432 22333222 4555543 3467899988887777777543
No 86
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.95 E-value=0.00086 Score=69.53 Aligned_cols=258 Identities=12% Similarity=0.078 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-----CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH
Q psy664 55 MVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-----ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129 (379)
Q Consensus 55 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 129 (379)
.++.+.-+|..++... + ......+++.+...+.+ .+...++.++++++.++.+...... ..++.++
T Consensus 437 ~R~~~~~~l~~~~~~~-~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~ 507 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVL-N---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHTTC-T---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-h---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHH
Confidence 4556777887777643 1 22334445555555543 5778999999999999977543321 2333333
Q ss_pred Hhh---c--CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q psy664 130 ELL---M--HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVI 204 (379)
Q Consensus 130 ~lL---~--~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 204 (379)
.++ . ++++.++..++++++.++..-....+. -..+++.+...|+ +.++..|++++.+++......+...+
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 332 3 348899999999999887421111111 1245667777773 78999999999999976655555444
Q ss_pred hcCchHHHHHHHHh--CcHHHHHHHHHHHHHHhcCCC-HHHHHHHHHcCChHHHHHh----hccC--CHHHHHHHHHHHH
Q psy664 205 DANIFPSLIEILQK--AEFKTRKEAAWAITNATSGGT-PDQIRYLIQQGCIEPFCEL----LTLL--DAKIIQVALNGLE 275 (379)
Q Consensus 205 ~~~~i~~Li~ll~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~~l~~~~~i~~L~~l----L~~~--d~~v~~~al~~L~ 275 (379)
+ .++..+..++.. .+.+.+..++.+++.++.... .+...++.. ++++++.. ++.. +.+-+......+.
T Consensus 583 ~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~--ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 659 (971)
T 2x1g_F 583 D-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDI--IVSPCFEELQAICQADSKTPAARIRTIFRLN 659 (971)
T ss_dssp H-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHH--HHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 3 577777788887 367888888999988875322 233333221 23444433 3332 3333333334444
Q ss_pred HHHHHcHHhhhhc--CC-----cchHHHHHHHhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcC
Q psy664 276 NILKLGEEEAKQT--GS-----VNPYVVLIEECYGLDKIEFLQS--HENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 276 ~l~~~~~~~~~~~--~~-----~~~~~~~i~~~g~l~~l~~l~~--~~~~~v~~~a~~il~~~~~ 331 (379)
.+........... .. .+++...+ ...+..+..++. ..+..+.+.++.++.....
T Consensus 660 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 660 MISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 3332222111000 00 01111122 234555555553 2477999999999887544
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.92 E-value=0.00047 Score=71.40 Aligned_cols=252 Identities=12% Similarity=0.083 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc------CCChHHHHHHHHHHHHhcCCC---h---H------H
Q psy664 54 SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF------HADPDVLADACWAISYLSDGP---N---E------K 115 (379)
Q Consensus 54 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~aL~~l~~~~---~---~------~ 115 (379)
+.+..|..+|..++.... ......+++.+.+.+. +.+...++.|+.+++.++.+. . . .
T Consensus 376 s~R~aa~~~L~~l~~~~~----~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE----VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc----hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 355577778888876531 2233445566655565 567789999999999997531 1 0 1
Q ss_pred HHHHHhcCcHHHHHHhhcCC---ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHh
Q psy664 116 IQAVIDAGVCRRLVELLMHD---QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNI 192 (379)
Q Consensus 116 ~~~~~~~g~i~~L~~lL~~~---~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl 192 (379)
...++ ...++..|.++ ++.++..|+|+++.++..-. .+ .-..+++.+++.|.+++..|+..|++++.++
T Consensus 452 l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 452 VVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA--QLIELMPILATFLQTDEYVVYTYAAITIEKI 523 (960)
T ss_dssp HHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 11111 12344445655 88999999999999986421 11 1234678888888888899999999999998
Q ss_pred hcCC-----------hHHHHHHHhcCchHHHHHHHHhCc---HH--HHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q psy664 193 TAGN-----------RQQIQAVIDANIFPSLIEILQKAE---FK--TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFC 256 (379)
Q Consensus 193 ~~~~-----------~~~~~~~~~~~~i~~Li~ll~~~~---~~--v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~ 256 (379)
+... .+.+...+. .+++.|+.++.... .+ ....++.+|..++.....+...++. .+++.|.
T Consensus 524 ~~~~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~ 600 (960)
T 1wa5_C 524 LTIRESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFI 600 (960)
T ss_dssp TTCBSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHH
T ss_pred HhcccccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHH
Confidence 7631 222222221 46667777777641 11 2345555555544211111111111 1233444
Q ss_pred Hhh----cc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 257 ELL----TL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 257 ~lL----~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
..+ ++ +++.+...++.+|+.++....... ...+... .+..+...+.....+....+..++..+.
T Consensus 601 ~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~-----~~~~~~~-----~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 601 EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQN-----LPLLVDS-----MMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGG-----HHHHHHH-----HHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcch-----HHHHHHH-----HHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 433 22 466777788999998888621110 1122222 2556666665554556666666665554
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.83 E-value=0.0046 Score=63.95 Aligned_cols=259 Identities=14% Similarity=0.104 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhh----cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh
Q psy664 57 RNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLL----FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL 132 (379)
Q Consensus 57 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL 132 (379)
..+.-+|..++.... ......+++.+...+ .+.+...++.++++++.++.+..+.. ...++.++..+
T Consensus 425 ~~~~~~L~~~~~~~~----~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l 495 (963)
T 2x19_B 425 VDISDTLMYVYEMLG----AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLI 495 (963)
T ss_dssp HHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcc----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHH
Confidence 445556666654320 112233444555555 55678899999999999997654311 23344444443
Q ss_pred ---cCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCch
Q psy664 133 ---MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIF 209 (379)
Q Consensus 133 ---~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i 209 (379)
..+++.++..++++++.++..-....+ . -..+++.+...|++ +.++..|++++.+++....+.....+ ..++
T Consensus 496 ~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il 570 (963)
T 2x19_B 496 PRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIV 570 (963)
T ss_dssp GGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHH
Confidence 335788999999999998753111112 2 23688888888865 78999999999999864443322222 1455
Q ss_pred HHHHHHHHhC--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc----c-CCHHHHH---HHHHHHHHHHH
Q psy664 210 PSLIEILQKA--EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT----L-LDAKIIQ---VALNGLENILK 279 (379)
Q Consensus 210 ~~Li~ll~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~----~-~d~~v~~---~al~~L~~l~~ 279 (379)
..+..++... +.+.+..++.+++.++.....+.....++ .+++++...+. . .+++.+. ..+.+|+.++.
T Consensus 571 ~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~ 649 (963)
T 2x19_B 571 AVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT 649 (963)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5566666653 57888889999999875444233322221 23444444432 2 2444444 45555555555
Q ss_pred HcHHhhhhc-------------CCcchHHHHHHHhccHHHHHHhh--cCCCHHHHHHHHHHHHHhcCC
Q psy664 280 LGEEEAKQT-------------GSVNPYVVLIEECYGLDKIEFLQ--SHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 280 ~~~~~~~~~-------------~~~~~~~~~i~~~g~l~~l~~l~--~~~~~~v~~~a~~il~~~~~~ 332 (379)
.-....... ....++...+.. .+..+..++ ...+.++.+.++.++..+...
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~ 715 (963)
T 2x19_B 650 TLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ--VFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKT 715 (963)
T ss_dssp HCCSSCCC---------------CCCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCcccccccccccccCCCCCCCCchHHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHHHHHHh
Confidence 432100000 001233333322 244444443 235678999999888886543
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.72 E-value=0.002 Score=66.83 Aligned_cols=210 Identities=11% Similarity=0.009 Sum_probs=122.2
Q ss_pred ChhHHHHHHHHHHHHhCCC-------CCCCChH----hHhhhHHHHHHhhcCCC--------h-------HHHHHHHHHH
Q psy664 52 RLSMVRNSVWVLSNLCRGK-------TPPPDFA----KVAPALACLSRLLFHAD--------P-------DVLADACWAI 105 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~-------~~~~~~~----~~~~~l~~L~~lL~~~d--------~-------~v~~~a~~aL 105 (379)
+..+...+++.+..++... +...... ....+++.++..+..++ + ..|..+..++
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l 445 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTF 445 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHH
Confidence 6778888999888886510 0111111 22345555555553221 1 3455666666
Q ss_pred HHhcCCCh-HHHHHHHhcCcHHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh---c-
Q psy664 106 SYLSDGPN-EKIQAVIDAGVCRRLVELLMH-----DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI---Q- 175 (379)
Q Consensus 106 ~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL---~- 175 (379)
..++.... ..... +++.+-+.+.+ .+...++.++.+++.++.+..... ...++.++.++ .
T Consensus 446 ~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 446 MYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCc
Confidence 66664432 12221 22333333333 577889999999999987644322 12333333333 2
Q ss_pred -CCChhhHHHHHHHHHHhhcC---ChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Q psy664 176 -SPKESIRKEACWAVSNITAG---NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGC 251 (379)
Q Consensus 176 -~~~~~v~~~a~~~l~nl~~~---~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~ 251 (379)
+.++.+|..++|+++.++.- +++... .+++.++..+ + +.++..|++++.+++... ...+.... ..+
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~-~~~l~p~~-~~l 585 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGL-N--SSMSAQATLGLKELCRDC-QLQLKPYA-DPL 585 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC-HHHHHHHH-HHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH-HHhccccH-HHH
Confidence 24789999999999998742 122222 3556666666 2 789999999999998433 22222211 235
Q ss_pred hHHHHHhhcc--CCHHHHHHHHHHHHHHHHHc
Q psy664 252 IEPFCELLTL--LDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 252 i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~ 281 (379)
+..+..++.. -+.+.+..++.++..++...
T Consensus 586 l~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 586 LNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 6667777776 35788999999999998753
No 90
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.70 E-value=0.0064 Score=62.02 Aligned_cols=227 Identities=15% Similarity=0.160 Sum_probs=158.8
Q ss_pred CChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhcCCChHHHH
Q psy664 40 NILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA-DPDVLADACWAISYLSDGPNEKIQ 117 (379)
Q Consensus 40 g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~aL~~l~~~~~~~~~ 117 (379)
+.++.++... +....++..|..+...+...-++ .....++|.|...|.+. ..+.+..|+.++..++...++...
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP----VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567777777 77778888888788887765422 22378999999998755 589999999999999976554443
Q ss_pred HHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc--C
Q psy664 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA--G 195 (379)
Q Consensus 118 ~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~--~ 195 (379)
.. -..++|.+.+.+-+..+++...|..++..+|.--+ +.+ -..++|.|++.+.+++. .-++...|+.-+- .
T Consensus 171 ~~-~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~ 243 (986)
T 2iw3_A 171 LR-MPELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAE 243 (986)
T ss_dssp HH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSC
T ss_pred Hh-ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEee
Confidence 22 24689999999999999999999999999885311 111 13578999999988743 4445555544221 1
Q ss_pred ChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc-CCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHHHHHH
Q psy664 196 NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS-GGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQVALNG 273 (379)
Q Consensus 196 ~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~ 273 (379)
-..-.-. =++|.|.+-|......+++.++-++-|+|. -.++.....++ -..+|.+-...+. .+|++|+.+-.+
T Consensus 244 v~~~~l~----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a 318 (986)
T 2iw3_A 244 VTPATLS----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRA 318 (986)
T ss_dssp CCHHHHH----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred ecchhHH----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHH
Confidence 1111111 246777788887888999999999999986 34555544443 3456666665554 789999999999
Q ss_pred HHHHHHHcH
Q psy664 274 LENILKLGE 282 (379)
Q Consensus 274 L~~l~~~~~ 282 (379)
+..+...+.
T Consensus 319 ~~~l~~~~~ 327 (986)
T 2iw3_A 319 LKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 888877654
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.69 E-value=0.0011 Score=68.75 Aligned_cols=176 Identities=11% Similarity=0.151 Sum_probs=110.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh-----------HHHHHHH
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN-----------EKIQAVI 120 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~-----------~~~~~~~ 120 (379)
.+-++..++|+++.++..- .......+++.+++.|.+++..|+..|+++|.+++.... +.....+
T Consensus 471 ~p~vr~~a~~~lg~~~~~~----~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL----TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS----CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred CceehHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 6777889999999998763 223567889999999998889999999999999886411 1111111
Q ss_pred hcCcHHHHHHhhcCCC---hH--HHHHHHHHHHHhhcCC-chhhHHHhhcCcHHHHHHhh----cCC-ChhhHHHHHHHH
Q psy664 121 DAGVCRRLVELLMHDQ---HK--VVSAALRAVGNIVTGD-DQQTQVILNCSALMCLLHLI----QSP-KESIRKEACWAV 189 (379)
Q Consensus 121 ~~g~i~~L~~lL~~~~---~~--i~~~al~~L~nl~~~~-~~~~~~~~~~~~l~~L~~lL----~~~-~~~v~~~a~~~l 189 (379)
..+++.|+.+++... .+ ....++.+|+.++... +.... .. ..+++.|...+ +++ ++..+..++.++
T Consensus 547 -~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l 623 (960)
T 1wa5_C 547 -EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESI 623 (960)
T ss_dssp -HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 246677777777641 11 2345666666554311 11111 11 12334444433 333 467777888899
Q ss_pred HHhhcC-ChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 190 SNITAG-NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 190 ~nl~~~-~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
+.++.. .++.... +...++|.+..++.....+....+...++.++
T Consensus 624 ~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 624 GAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 888765 4443333 34467888888888765666777777777665
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.0035 Score=54.81 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=125.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhh--HHHh--hcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChH-----
Q psy664 128 LVELLMHDQHKVVSAALRAVGNIVTGDDQQT--QVIL--NCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ----- 198 (379)
Q Consensus 128 L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~----- 198 (379)
+-+.|.+.++..|..|+..|..+........ .... -....+.+.+.+.+.+..+...++.++..++.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5678899999999999999988875432211 1111 124567778888888999999999999987652211
Q ss_pred HHHHHHhcCchHHHHH-HHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHH
Q psy664 199 QIQAVIDANIFPSLIE-ILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277 (379)
Q Consensus 199 ~~~~~~~~~~i~~Li~-ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 277 (379)
......-..+++.|+. .+.+....++..+..++..++....... . +++.+...+.+.++.++..++..|.++
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~--~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT--Q-----SVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH--H-----HHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH--H-----HHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 1111112245666664 3566778888888888877653222111 1 246677788999999999999999998
Q ss_pred HHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCc
Q psy664 278 LKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEE 334 (379)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~~~ 334 (379)
+...... ..+....+ ..++..+..+++|.+++|+..|..++..+|.--+
T Consensus 167 l~~fg~~------~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 167 MAAFGLT------NVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHTTT------TCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCCC------cCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 8753211 11111111 1124567788999999999999999988877543
No 93
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.61 E-value=0.00082 Score=57.89 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=121.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhc-Cc-HHHHHHhhcCCChHHHHHHHHHHHHhhcC----Cchhh
Q psy664 85 CLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDA-GV-CRRLVELLMHDQHKVVSAALRAVGNIVTG----DDQQT 158 (379)
Q Consensus 85 ~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~-i~~L~~lL~~~~~~i~~~al~~L~nl~~~----~~~~~ 158 (379)
.+...|.+.|..-+..++..|.......++. ++.. +. ++-+.-.+-+++..+...++.+|..+... .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~---~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRS---LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH---HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4555666778777777777776554333222 2211 11 22222233467888999999888887531 11111
Q ss_pred HHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Q psy664 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG 237 (379)
Q Consensus 159 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~ 237 (379)
... -.-++|.|+.-+.+.+..+|..+-.++..++. .++. .+++.+++.+.+.+.++|.+++..+..++..
T Consensus 127 ~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 127 QEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 111 12478999999988889999988888877653 2222 3567777778888999999999999998753
Q ss_pred CCHHHHHHHHHcCCh---HHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 238 GTPDQIRYLIQQGCI---EPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 238 ~~~~~~~~l~~~~~i---~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
.... ....+ +.+..++.+.|..|+..|+.++..+.....
T Consensus 198 ~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 198 AGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 2222 23468 999999999999999999999998887654
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.002 Score=56.32 Aligned_cols=185 Identities=11% Similarity=0.081 Sum_probs=123.6
Q ss_pred HHhcC-CCChhHHHHHHHHHHHHhCCCCCCC-C---hHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCCh-----H
Q psy664 45 LIDKP-KNRLSMVRNSVWVLSNLCRGKTPPP-D---FAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN-----E 114 (379)
Q Consensus 45 Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~-~---~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~-----~ 114 (379)
|-.-| +.+...+..+.-.+..+........ . ........+.+.+.+.+.|..++..++.++..++.... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34455 8888899999888887765432111 0 11123456677788889999999999999987764321 1
Q ss_pred HHHHHHhcCcHHHHHHh-hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 115 KIQAVIDAGVCRRLVEL-LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 115 ~~~~~~~~g~i~~L~~l-L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
......-..+++.|+.- +.+....++..++.++..++...... . .+++.+...+.+.++.++.+++..|.++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11112223567888865 78889999999999888776432211 1 13456777889999999999999888865
Q ss_pred c--CChH-HHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhc
Q psy664 194 A--GNRQ-QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236 (379)
Q Consensus 194 ~--~~~~-~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~ 236 (379)
. |... .....+. .+++.+..++.+.++.||..|..++..+..
T Consensus 168 ~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3 1111 0111111 356677888999999999999999988753
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.53 E-value=0.0015 Score=67.65 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=95.7
Q ss_pred HHHHHHhhcC--CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-----CChHHHHHHHHHHHHhhcCCc
Q psy664 83 LACLSRLLFH--ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-----DQHKVVSAALRAVGNIVTGDD 155 (379)
Q Consensus 83 l~~L~~lL~~--~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~i~~~al~~L~nl~~~~~ 155 (379)
++.+.+.+.. .+...++.++|+++.++.+..+....-.-..+++.|+.++.+ ++..++..++|++|..+.--.
T Consensus 453 ~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~ 532 (1023)
T 4hat_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1023)
T ss_dssp HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh
Confidence 3344444443 578999999999999998865543323334578888888764 334455678899997663211
Q ss_pred hhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHh------cCchHH----HHHHHHhCcHHHHH
Q psy664 156 QQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID------ANIFPS----LIEILQKAEFKTRK 225 (379)
Q Consensus 156 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~------~~~i~~----Li~ll~~~~~~v~~ 225 (379)
...+. + ..++..|...|..+++.++..|||++.++|..... .+.. ...++. +...+..-+++-+.
T Consensus 533 ~~~~~-L-~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~---~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 533 AHWNF-L-RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp HCHHH-H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred ccHHH-H-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH---HhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 11111 1 13455566666667789999999999999864332 2221 123333 34444445777788
Q ss_pred HHHHHHHHHhcCCC
Q psy664 226 EAAWAITNATSGGT 239 (379)
Q Consensus 226 ~a~~~l~nl~~~~~ 239 (379)
.++.+++.++....
T Consensus 608 ~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 608 TFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCC
Confidence 89999999886544
No 96
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.48 E-value=0.015 Score=51.26 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=149.4
Q ss_pred HHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch----hhHHHh-hcCcHHHHHHhhcCCChhhHHHHHHHHH
Q psy664 116 IQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ----QTQVIL-NCSALMCLLHLIQSPKESIRKEACWAVS 190 (379)
Q Consensus 116 ~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~----~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~l~ 190 (379)
.+.++..+.+..|+..|..=+-+.+..+..+.+++...... ..+.+. ...++..|+....++ ++-.. |+.+-
T Consensus 71 ~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~--diAl~-~G~mL 147 (341)
T 1upk_A 71 AQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP--EIALN-CGIML 147 (341)
T ss_dssp HHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST--TTHHH-HHHHH
T ss_pred HHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc--hhHhH-HHHHH
Confidence 35567789999999999988888999999999998865432 222232 234455555555544 33333 33333
Q ss_pred HhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--CChHHHHHhhccCCHHHHH
Q psy664 191 NITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQ--GCIEPFCELLTLLDAKIIQ 268 (379)
Q Consensus 191 nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~--~~i~~L~~lL~~~d~~v~~ 268 (379)
.-|...+.....++.++.+-.+.+.++.+..++-..|..++..++..+..-...++..+ .++..+-.||.+++.-+++
T Consensus 148 Recir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 148 RECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 44455667777888888888999999999999999999999999866544444444332 4567778899999999999
Q ss_pred HHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 269 VALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 269 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
.++..|+.++-.-.+..- ....+.+..-+..+..|+.+++..|+-.|+.+..-|..
T Consensus 228 QSlKLLgelLldr~N~~v-------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTI-------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHHHSGGGHHH-------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHH-------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 999999999976544321 23455566677888999999999999999998876654
No 97
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.44 E-value=0.039 Score=48.62 Aligned_cols=227 Identities=9% Similarity=0.080 Sum_probs=157.7
Q ss_pred hhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHh-----HhhhHHHHHHhhcCCChHHHHHHHHH
Q psy664 31 SVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAK-----VAPALACLSRLLFHADPDVLADACWA 104 (379)
Q Consensus 31 ~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-----~~~~l~~L~~lL~~~d~~v~~~a~~a 104 (379)
+....+...+.+..|+..| .-+-+.+..++-+++++.+.........+ ...++..|+..-. ++++...+-..
T Consensus 69 qL~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~m 146 (341)
T 1upk_A 69 QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIM 146 (341)
T ss_dssp HHHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHH
Confidence 4556678889999999988 77889999999999999987633221111 1245555555544 45555555555
Q ss_pred HHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc---CcHHHHHHhhcCCChhh
Q psy664 105 ISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC---SALMCLLHLIQSPKESI 181 (379)
Q Consensus 105 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v 181 (379)
|.-...+. .....++..+.+-.+.+.++.++-++...|..++.-+.+.........+.. .+....-++|.+++.-+
T Consensus 147 LRecir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 147 LRECIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp HHHHHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence 66555553 456667777888899999999999999999999998887654443333333 35566778999999999
Q ss_pred HHHHHHHHHHhhcC--ChHHHH-HHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC--CCHHHHHHHHHc--CChHH
Q psy664 182 RKEACWAVSNITAG--NRQQIQ-AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG--GTPDQIRYLIQQ--GCIEP 254 (379)
Q Consensus 182 ~~~a~~~l~nl~~~--~~~~~~-~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~--~~~~~~~~l~~~--~~i~~ 254 (379)
|+.++..|+.+... +..... .+-+..-+..++.+|.+.+..++-+|..++--+++. .++.....++.+ ..+..
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~f 305 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEF 305 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHH
Confidence 99999999997643 333222 333446789999999999999999999988776642 334444444432 44444
Q ss_pred HHHhhc
Q psy664 255 FCELLT 260 (379)
Q Consensus 255 L~~lL~ 260 (379)
|-++..
T Consensus 306 l~~f~~ 311 (341)
T 1upk_A 306 LSKFQN 311 (341)
T ss_dssp HHHTTT
T ss_pred HHhCCC
Confidence 444443
No 98
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.43 E-value=0.0064 Score=62.88 Aligned_cols=220 Identities=10% Similarity=0.091 Sum_probs=126.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHh
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVEL 131 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~l 131 (379)
+...+..++|+++.++.+-..... .....+++.+..+ ..+++.++..++|+++..+..-....+ .+ ..+++.++..
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~~-~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~ 537 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNYS-DVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHA 537 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSCC-SHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCchhh-HHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHH
Confidence 455677899999999987533211 1122344433322 335788999999999988743211111 22 3688899988
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC--ChhhHHHHHHHHHHhhcCCh-HHHHHHHhcCc
Q psy664 132 LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP--KESIRKEACWAVSNITAGNR-QQIQAVIDANI 208 (379)
Q Consensus 132 L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~ 208 (379)
|.+ +.++..|++++.+++........... ..++..+..++.+. +...+..+..+++.++...+ +.....++ .+
T Consensus 538 l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l 613 (963)
T 2x19_B 538 LGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SL 613 (963)
T ss_dssp TTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HH
T ss_pred hCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HH
Confidence 855 78999999999999964322111000 13344455566643 46788899999999876443 44444333 45
Q ss_pred hHHHHHHHHh----C-cHHHHHH---HHHHHHHHhc---CCCH------------------HHHHHHHHcCChHHHHHhh
Q psy664 209 FPSLIEILQK----A-EFKTRKE---AAWAITNATS---GGTP------------------DQIRYLIQQGCIEPFCELL 259 (379)
Q Consensus 209 i~~Li~ll~~----~-~~~v~~~---a~~~l~nl~~---~~~~------------------~~~~~l~~~~~i~~L~~lL 259 (379)
++.+...+.. . +++.+.. ...+|+.+.. ...+ +....+ ...+++.+..++
T Consensus 614 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 692 (963)
T 2x19_B 614 ISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVV-LQQVFQLIQKVL 692 (963)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHH-HHHHHHHHHHHH
Confidence 5555554432 2 4444442 3333333332 1000 111111 223455555555
Q ss_pred cc--CCHHHHHHHHHHHHHHHHH
Q psy664 260 TL--LDAKIIQVALNGLENILKL 280 (379)
Q Consensus 260 ~~--~d~~v~~~al~~L~~l~~~ 280 (379)
.. .+..+.+.++.++..++..
T Consensus 693 ~~~~~~~~v~e~~~~~l~~~~~~ 715 (963)
T 2x19_B 693 SKWLNDAQVVEAVCAIFEKSVKT 715 (963)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhccCchHHHHHHHHHHHHHHHh
Confidence 43 5678999999999888764
No 99
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.36 E-value=0.021 Score=50.33 Aligned_cols=198 Identities=15% Similarity=0.174 Sum_probs=137.4
Q ss_pred HhhhHHHHHHhhcCCC-------hH------HHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHH
Q psy664 79 VAPALACLSRLLFHAD-------PD------VLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d-------~~------v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~ 145 (379)
.+|++-.--+++.-.| ++ +...+...| ++.-++++.++-+++.+++..+...++-++.++.+..++
T Consensus 228 Lkgv~~~s~~~~~~~dpet~~qNpel~~LiQVvtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~K 306 (619)
T 3c2g_A 228 LNAVMIGSYRLIAGQNPETLPQNPELAHLIQVIIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCK 306 (619)
T ss_dssp HHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHhhHHhhcCCChhcccCCHHHHHHHHHHHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhh
Confidence 3566555555555333 22 333333333 455566689999999999999999999999999999999
Q ss_pred HHHHhhcCCchhhHHHhhcCcHHHHHHhh-cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-----
Q psy664 146 AVGNIVTGDDQQTQVILNCSALMCLLHLI-QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA----- 219 (379)
Q Consensus 146 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~----- 219 (379)
.|-..+.... ... .--...+|.++..+ .+++.++.......++|..++-....+..+.+|.++.|.+.+...
T Consensus 307 LLLQVSDaks-L~~-t~L~e~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsd 384 (619)
T 3c2g_A 307 LLLQVSDAKA-LAK-TPLENILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDE 384 (619)
T ss_dssp HHHHHTTCGG-GGT-SCCTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGG
T ss_pred eeeeecchHH-Hhh-ccccccchHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhh
Confidence 9988774321 111 11135788888888 477899999999999999998888888888999999999887652
Q ss_pred --cHHHHHHHHHHHHHHhcC-------------------CC--HHHHHHHHHcCChHHHHHhhccCCH------HHHHHH
Q psy664 220 --EFKTRKEAAWAITNATSG-------------------GT--PDQIRYLIQQGCIEPFCELLTLLDA------KIIQVA 270 (379)
Q Consensus 220 --~~~v~~~a~~~l~nl~~~-------------------~~--~~~~~~l~~~~~i~~L~~lL~~~d~------~v~~~a 270 (379)
+-.-++.||..++|.+.. |. ..+...+++.++++.|+..|+.+.. +++..+
T Consensus 385 f~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTI 464 (619)
T 3c2g_A 385 LTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTI 464 (619)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHH
Confidence 445567788877776521 11 2344456677788888888865421 566666
Q ss_pred HHHHHHHHH
Q psy664 271 LNGLENILK 279 (379)
Q Consensus 271 l~~L~~l~~ 279 (379)
+..+.-+..
T Consensus 465 LR~F~LvlR 473 (619)
T 3c2g_A 465 LRSFILLLR 473 (619)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 666554443
No 100
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=97.23 E-value=0.017 Score=48.90 Aligned_cols=183 Identities=10% Similarity=0.079 Sum_probs=117.9
Q ss_pred HhcCCChHHHHHHHhcCcHHHHHHhhcC-----------CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc
Q psy664 107 YLSDGPNEKIQAVIDAGVCRRLVELLMH-----------DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ 175 (379)
Q Consensus 107 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 175 (379)
.|...+..+.+.+ ..+++..|+..|.. .+......+++||..+..........+.....+..+...|.
T Consensus 28 ~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~ 106 (233)
T 2f31_A 28 SLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD 106 (233)
T ss_dssp HHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC
T ss_pred hHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC
Confidence 3445556777777 46777777777653 13466788999999988655445555556678999999999
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHH
Q psy664 176 SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPF 255 (379)
Q Consensus 176 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L 255 (379)
++++.++..|+..++-+|..+.. .|..+.+++.+.+- + .. .+..-+..+
T Consensus 107 s~~~~~r~~~leLL~~lc~~~~~-------~G~~~~VL~Al~~~----~--------~~------------~e~~RF~~l 155 (233)
T 2f31_A 107 PAVPNMMIDAAKLLSALCILPQP-------EDMNERVLEAMTER----A--------EM------------DEVERFQPL 155 (233)
T ss_dssp TTSHHHHHHHHHHHHHHHTCSSS-------SCHHHHHHHHHHHH----H--------HH------------HTSCTTHHH
T ss_pred CCCchHHHHHHHHHHHHHhCCCC-------CChHHHHHHHHHHH----H--------Hh------------CCcchHHHH
Confidence 99999999999999888764321 12134444444320 0 00 112234555
Q ss_pred HHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHH
Q psy664 256 CELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDI 325 (379)
Q Consensus 256 ~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~i 325 (379)
++.+.. .+.+.+..++..+-.++...++... -..+...+..+|..+.+..+...+++++..+-...
T Consensus 156 v~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~f 222 (233)
T 2f31_A 156 LDGLKSGTSIALKVGCLQLINALITPAEELDF----RVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF 222 (233)
T ss_dssp HHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHHH
Confidence 666653 5567777777766666665544321 11244567789999999999998888877665443
No 101
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.19 E-value=0.063 Score=47.39 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=109.4
Q ss_pred HHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc-CCChHHHH
Q psy664 63 LSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM-HDQHKVVS 141 (379)
Q Consensus 63 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~ 141 (379)
|.+|...++...+-.+..+++..+...++-++.++....+..|...++...-... --...+|.++..++ ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceEE
Confidence 4455555434455556677888888889999999999999999888865431110 00145777777765 67889999
Q ss_pred HHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC-------ChhhHHHHHHHHHHhhc--------------------
Q psy664 142 AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP-------KESIRKEACWAVSNITA-------------------- 194 (379)
Q Consensus 142 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~l~nl~~-------------------- 194 (379)
...+.|+|.+.......+..+..|+++.|-+.+... +..-++.||.+++|-..
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999999888888889999999999887432 24456777777766321
Q ss_pred CC--hHHHHHHHhcCchHHHHHHHHhC
Q psy664 195 GN--RQQIQAVIDANIFPSLIEILQKA 219 (379)
Q Consensus 195 ~~--~~~~~~~~~~~~i~~Li~ll~~~ 219 (379)
|. ..+...+++.++++.|+.+|+-.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 22334566667888888888654
No 102
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.09 E-value=0.018 Score=60.20 Aligned_cols=227 Identities=10% Similarity=0.084 Sum_probs=119.7
Q ss_pred HHHHhcC-CCChhHHHHHHHHHHHHhC----CCCCCCCh--HhHhhhHHHHHHhhcCC-------------------Ch-
Q psy664 43 YPLIDKP-KNRLSMVRNSVWVLSNLCR----GKTPPPDF--AKVAPALACLSRLLFHA-------------------DP- 95 (379)
Q Consensus 43 ~~Ll~lL-~~~~~~~~~a~~~L~~l~~----~~~~~~~~--~~~~~~l~~L~~lL~~~-------------------d~- 95 (379)
+.++... .++.++...+.-.+..++. .. ..... .....+++.++..+..+ |.
T Consensus 347 ~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~-~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d 425 (1049)
T 3m1i_C 347 QYLIQLSKIEERELFKTTLDYWHNLVADLFYEP-LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1049)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHST-TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccch
Confidence 3333333 4456666667666666665 22 11111 23345566666555321 10
Q ss_pred --HHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc--CCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHH
Q psy664 96 --DVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM--HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLL 171 (379)
Q Consensus 96 --~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 171 (379)
..+..+..+|..++...... ++ .-+.+.+-+.+. +.++..++.+++++|.++.+.......-.-..+++.+.
T Consensus 426 ~~~~~~~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~ 501 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHH
Confidence 12334455565555322211 11 112344444454 35788999999999999855332211111122444444
Q ss_pred HhhcC-----CChhhHHHHHHHHHHhhc---CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHH
Q psy664 172 HLIQS-----PKESIRKEACWAVSNITA---GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQI 243 (379)
Q Consensus 172 ~lL~~-----~~~~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~ 243 (379)
.+... +.+.++..++|+++.++. ..++... .+++.++..+.+.++.++..|++++.+++........
T Consensus 502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~ 576 (1049)
T 3m1i_C 502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFV 576 (1049)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44332 234555579999998763 2222222 4566777778788899999999999999853222111
Q ss_pred --------HHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHc
Q psy664 244 --------RYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 244 --------~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 281 (379)
.++ ..++..+..++..-+.+-...+..++..++...
T Consensus 577 ~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 577 IQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp SCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred cccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 111 112333334444445555566677777776654
No 103
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.08 E-value=0.014 Score=61.00 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc--CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc
Q psy664 56 VRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF--HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM 133 (379)
Q Consensus 56 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 133 (379)
.+.+.-+|..++... ......-+.+.+.+.+. ..+...++.++++++.++.........-+-..+++.+..+..
T Consensus 430 ~~~~~~~L~~l~~~~----~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLN----VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccC----HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence 334556666666432 11233444555555564 356889999999999998764333221112235555555433
Q ss_pred C-----CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHH-------
Q psy664 134 H-----DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQ------- 201 (379)
Q Consensus 134 ~-----~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~------- 201 (379)
. +++.++..++|+++.++.--....+.+ ..+++.+...|.++++.|+..||+++.+++........
T Consensus 506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~ 583 (1049)
T 3m1i_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1049)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 2 233444468899997764211111111 24567788888888899999999999999864332211
Q ss_pred -HHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC
Q psy664 202 -AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239 (379)
Q Consensus 202 -~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~ 239 (379)
..+ ..++..+..++..-+.+-....+.+++.++....
T Consensus 584 ~p~~-~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 584 EPFI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp SCHH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred CcHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 111 1234444455555455555666677776654433
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.95 E-value=0.0032 Score=59.14 Aligned_cols=242 Identities=14% Similarity=0.134 Sum_probs=157.7
Q ss_pred hHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCC--CChHhHhhhHHHHHHhhc-------CCC---hHHHHHHHHHHHHh
Q psy664 42 LYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPP--PDFAKVAPALACLSRLLF-------HAD---PDVLADACWAISYL 108 (379)
Q Consensus 42 i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~-------~~d---~~v~~~a~~aL~~l 108 (379)
...|+.-| ++..+++.-|+-+|+.+.+..... +......++.-.++-++. ..| .-||+.|+.+|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 34444445 889999999999999988754211 111111133333333331 122 57999999999998
Q ss_pred cCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHH
Q psy664 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWA 188 (379)
Q Consensus 109 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 188 (379)
.+-+.. ..++..++..+..+.++++..++-.|..+. +-..+ -.++++.++..|.+.+.+||..|+.+
T Consensus 256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 554433 456666776778889999999999999881 11111 23567888888999999999999999
Q ss_pred HHHhhcCChHHHHHHHhcCchHHHHHHHHhCcH--HHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHH
Q psy664 189 VSNITAGNRQQIQAVIDANIFPSLIEILQKAEF--KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKI 266 (379)
Q Consensus 189 l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~--~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 266 (379)
+.-++ .++.+. .++..+.+.|.+-|+ .-....+..|+.+++... . .-.+...++.|..+|.+.-+.|
T Consensus 323 LiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 323 LCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-E---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-T---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred hhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-c---cccChHHHHHHHhhhcCCcHHH
Confidence 99987 333333 345566666665431 112334445555553221 0 0011267888999999999999
Q ss_pred HHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHH
Q psy664 267 IQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIE 327 (379)
Q Consensus 267 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~ 327 (379)
|..++.+|..++ ... +...+ .++++-.++++|++.+..+..
T Consensus 392 R~AVL~TL~tfL--~~~----------~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS--EES----------IDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC--CHH----------HHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhh----------HHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 999999998877 111 11122 366778889999999998886
No 105
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.88 E-value=0.081 Score=44.63 Aligned_cols=184 Identities=11% Similarity=0.176 Sum_probs=120.9
Q ss_pred ChHHHHHHHHHHHHhcCCChHHHHHHHh-cCcHHHHHHh-------hcCCC-----hHHHHHHHHHHHHhhcCCchhhHH
Q psy664 94 DPDVLADACWAISYLSDGPNEKIQAVID-AGVCRRLVEL-------LMHDQ-----HKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 94 d~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~l-------L~~~~-----~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
+++-++.|+.-|+.=-+.-++-...+-. .|.+..|++= +..+. ..-.-+|+..+..++. .++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 4555777776666544433333332322 2555444322 22221 1223456666677775 5677777
Q ss_pred HhhcCcHHHHHHhhcCCC-----hhhHHHHHHHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHH
Q psy664 161 ILNCSALMCLLHLIQSPK-----ESIRKEACWAVSNITA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA 234 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl 234 (379)
++++.+.-+|..+|+..+ +.+|-.+.++++.+.. .+++.+..+++.+++|.+.+.+..++.-.|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 889988888888886554 5789999999999876 6677888999999999999999999999999999999998
Q ss_pred hcCCCHHHHHHHHHc--------CChHHHHHhh-ccCCHHHHHHHHHHHHHHHHH
Q psy664 235 TSGGTPDQIRYLIQQ--------GCIEPFCELL-TLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 235 ~~~~~~~~~~~l~~~--------~~i~~L~~lL-~~~d~~v~~~al~~L~~l~~~ 280 (379)
+. ++....++... .++..++.-+ ..+.+.+.+.+.++-.++.+.
T Consensus 173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 74 44444444321 1233333322 346677778877777776654
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.81 E-value=0.049 Score=46.84 Aligned_cols=184 Identities=13% Similarity=0.053 Sum_probs=115.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHH---HHH
Q psy664 126 RRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ---IQA 202 (379)
Q Consensus 126 ~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~---~~~ 202 (379)
+.+...|-+.+..-+..++..|......++......++. +++++.-.+.+.+..+...++.++..+...-.+. ...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 344455556666666667766665543322211111111 2343333344667888888888877764210000 000
Q ss_pred HHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcH
Q psy664 203 VIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282 (379)
Q Consensus 203 ~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 282 (379)
-...-++|.|+.-+.++...+|..+-.++..+..-..+. .+++.+++-+.+++.+.+..++..+..++....
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 001246788888887777888887777766554222222 346778888899999999999999999987532
Q ss_pred HhhhhcCCcchHHHHHHHhccH---HHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 283 EEAKQTGSVNPYVVLIEECYGL---DKIEFLQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 283 ~~~~~~~~~~~~~~~i~~~g~l---~~l~~l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
.. ...++ ..+-.++.++|..|+..|...+...|.-.
T Consensus 200 --------~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 200 --------IS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp --------SG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred --------CC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 11 13356 88899999999999999999888777543
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.79 E-value=0.0049 Score=57.95 Aligned_cols=189 Identities=15% Similarity=0.137 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh
Q psy664 53 LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL 132 (379)
Q Consensus 53 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL 132 (379)
..+++.++.+|+.+ ..-++. -.++..++..+..+..+++..++..|.|+.+--. . -.++++.++..|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~----~--Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE----D--KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC----C--HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH----H--HHHHHHHHHhhc
Confidence 47888999999999 543222 3456666666678889999999999999932111 1 246788999999
Q ss_pred cCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC--hhhHHHHHHHHHHhhcCChHHHHHHHhcCchH
Q psy664 133 MHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK--ESIRKEACWAVSNITAGNRQQIQAVIDANIFP 210 (379)
Q Consensus 133 ~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~ 210 (379)
.+.+++++..|..+|..++ .+.... .++..+...|.+.+ ..-.......|+.++..+.. .-.+..++|
T Consensus 309 ~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVP 378 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLK 378 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGG
T ss_pred CCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHH
Confidence 9999999999999999988 222222 34555666665433 33344555566666554421 111237899
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHH
Q psy664 211 SLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLE 275 (379)
Q Consensus 211 ~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~ 275 (379)
.|...+.+.-..||+.++.++..++ .....+.+ +-.+|-.++.+++..+..+..
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL---~~~~LRLI--------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS---EESIDFLV--------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC---CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH---hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999999998876 33333322 233566678888888877764
No 108
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.75 E-value=0.093 Score=47.90 Aligned_cols=185 Identities=10% Similarity=0.078 Sum_probs=118.7
Q ss_pred HHHHHH-HhcCCChHHHHHHHhcCcHHHHHHhhcC-----------CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHH
Q psy664 101 ACWAIS-YLSDGPNEKIQAVIDAGVCRRLVELLMH-----------DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168 (379)
Q Consensus 101 a~~aL~-~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~ 168 (379)
.+..|. .|...+..+.+.+. .+++..|+..|.. .+..+...+++||..+..........+-....+.
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~ 165 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 165 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHH
Confidence 344443 45566677888887 6778888888752 2457788899999998865545555555668899
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhcCCh-HHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy664 169 CLLHLIQSPKESIRKEACWAVSNITAGNR-QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLI 247 (379)
Q Consensus 169 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~ 247 (379)
.|...+.+.++.++..|+..++-+|..+. + |..+.+++.+.+- .. ..
T Consensus 166 ~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~--------gG~~~VL~Al~~~------------~~------------~~ 213 (383)
T 3eg5_B 166 LLVRAMDPAVPNMMIDAAKLLSALCILPQPE--------DMNERVLEAMTER------------AE------------MD 213 (383)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHTCCSST--------THHHHHHHHHHHH------------HH------------HH
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCcCcC--------CcHHHHHHHHHHH------------HH------------hC
Confidence 99999999999999999999988876442 2 2233333333221 00 01
Q ss_pred HcCChHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHH
Q psy664 248 QQGCIEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKA 322 (379)
Q Consensus 248 ~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a 322 (379)
+..-+..+++.|.. .+.+.+..++..+-.++...++... -..+...+..+|..+.+..+...+++++..+.
T Consensus 214 e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~----R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi 285 (383)
T 3eg5_B 214 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----RVHIRSELMRLGLHQVLQELREIENEDMKVQL 285 (383)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH----HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHCChHHHHHHHhcCCChhHHHHH
Confidence 12335566666765 4667777666666666655443321 11234567788888888888877777666543
No 109
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.73 E-value=0.022 Score=59.01 Aligned_cols=146 Identities=10% Similarity=0.117 Sum_probs=87.9
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh-----CcHHHHHHHHHHHHHHhcC--CCHHHHHHHHHc
Q psy664 177 PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK-----AEFKTRKEAAWAITNATSG--GTPDQIRYLIQQ 249 (379)
Q Consensus 177 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~-----~~~~v~~~a~~~l~nl~~~--~~~~~~~~l~~~ 249 (379)
.+...++.++|+++.++.+..+....-.-..+++.|+.++.+ ....++..++|+++..+.. .+++....
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~---- 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT---- 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH----
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH----
Confidence 468889999999999987654432222222577888888764 3345667788999987542 23333322
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhh-hc-CCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHH
Q psy664 250 GCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK-QT-GSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIE 327 (379)
Q Consensus 250 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~-~~-~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~ 327 (379)
++..|+..|..+.+.++..|+++|.+++......-. .+ +...+|...+ ++.+......-+..-...++..+.
T Consensus 541 -vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~i-----l~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 541 -VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI-----IRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp -HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH-----HHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHH-----HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 366677777777889999999999999987543211 00 1123454443 233333333333444445555555
Q ss_pred HhcCC
Q psy664 328 HYFGS 332 (379)
Q Consensus 328 ~~~~~ 332 (379)
.+.+.
T Consensus 615 ~vi~~ 619 (1023)
T 4hat_C 615 IIISE 619 (1023)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 55444
No 110
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=96.34 E-value=0.36 Score=44.03 Aligned_cols=179 Identities=11% Similarity=0.078 Sum_probs=113.5
Q ss_pred hcCCChHHHHHHHhcCcHHHHHHhhcC-----------CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC
Q psy664 108 LSDGPNEKIQAVIDAGVCRRLVELLMH-----------DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS 176 (379)
Q Consensus 108 l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~ 176 (379)
|...+..+.+.+. .+++..|+..|.. .+......+++||..+..........+.....+..+...|.+
T Consensus 33 Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s 111 (386)
T 2bnx_A 33 LNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP 111 (386)
T ss_dssp HHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT
T ss_pred HhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCC
Confidence 3445556777775 5667777777642 134677889999999886554555555566789999999998
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHH
Q psy664 177 PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFC 256 (379)
Q Consensus 177 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~ 256 (379)
+++.++..++..++-+|..+.. .|..+.+++.+.+- ... .+..-+..++
T Consensus 112 ~~~~~r~~vleLL~alc~~~~~-------~G~~~~VL~Al~~~------------~~~------------~e~~RF~~lv 160 (386)
T 2bnx_A 112 AVPNMMIDAAKLLSALCILPQP-------EDMNERVLEAMTER------------AEM------------DEVERFQPLL 160 (386)
T ss_dssp TSHHHHHHHHHHHHHHHTCCSS-------TTHHHHHHHHHHHH------------HHH------------HTSCTTHHHH
T ss_pred CCchHHHHHHHHHHHHHcCCCC-------CChHHHHHHHHHHH------------HHh------------CchhhHHHHH
Confidence 8999999999988888764321 02133344444320 000 1122344555
Q ss_pred Hhhc-cCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHH
Q psy664 257 ELLT-LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKA 322 (379)
Q Consensus 257 ~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a 322 (379)
+.+. ..+.+.+..++..+-.++...++... -..+..-|..+|..+.|..+...+++++..+-
T Consensus 161 ~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~----R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 161 DGLKSGTSIALKVGCLQLINALITPAEELDF----RVHIRSELMRLGLHQVLQELREIENEDMKVQL 223 (386)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH----HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHCCCCCHHH----HHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence 6665 34567777776666666665554322 11244567788888888888888888776553
No 111
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.28 E-value=0.093 Score=43.88 Aligned_cols=136 Identities=13% Similarity=0.025 Sum_probs=98.3
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHH-hhcCCChHHHHHHHHHHHHhcC-CChHHHHHHHhcCcHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSR-LLFHADPDVLADACWAISYLSD-GPNEKIQAVIDAGVCRR 127 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~aL~~l~~-~~~~~~~~~~~~g~i~~ 127 (379)
++..+++..|+.+|..+ . ....+++.+.. +-..++-.|++.++.++..++. ..++ ..++.
T Consensus 82 ~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~ 143 (240)
T 3l9t_A 82 SDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPI 143 (240)
T ss_dssp CSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHH
T ss_pred CcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHH
Confidence 55567777888888877 2 12457888887 6566778999999999988873 2222 15677
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy664 128 LVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA 206 (379)
Q Consensus 128 L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 206 (379)
+.....+++..+++.|...+.--+.. +... .--.-++|.|..+..+++.-||+...|.|..++..+|+.+..+++.
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 88889999999999988776543321 1110 0011257777888888889999999999999999999887766653
No 112
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.06 E-value=0.56 Score=39.59 Aligned_cols=191 Identities=14% Similarity=0.104 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHhh-cCcHHHHHH-------hhcCCC--hhhHHHHHHHH---HHhhcCChHHHHHHH
Q psy664 138 KVVSAALRAVGNIVTGDDQQTQVILN-CSALMCLLH-------LIQSPK--ESIRKEACWAV---SNITAGNRQQIQAVI 204 (379)
Q Consensus 138 ~i~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~-------lL~~~~--~~v~~~a~~~l---~nl~~~~~~~~~~~~ 204 (379)
+.++.|+..|+.=-..-+.....+.. .|.+..|++ .+..+. ...-..+|.++ ..++ ++++....++
T Consensus 16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~Fl 94 (268)
T 2fv2_A 16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSAFL 94 (268)
T ss_dssp TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHHHH
T ss_pred hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhHHH
Confidence 34777776666533222233333332 244444432 122221 22223344443 3444 5777888899
Q ss_pred hcCchHHHHHHHHhCc-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHH
Q psy664 205 DANIFPSLIEILQKAE-----FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILK 279 (379)
Q Consensus 205 ~~~~i~~Li~ll~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 279 (379)
++++.-.|.-.|+..+ ..+|-.++++++.++...+++.+.++.+.++++.....++.+..--+..|...+..|+.
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 9998888888887653 56889999999999988999999999999999999999999999888999999999997
Q ss_pred HcHHhhhhcCCcchHHHHHHHhccHHH-HHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 280 LGEEEAKQTGSVNPYVVLIEECYGLDK-IEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~~~g~l~~-l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
.......-+...+.|.... ..+.+ +..+...+++++-+.....--++.+.
T Consensus 175 dd~GL~YiC~t~eRF~av~---~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 175 DDTGLAYICQTYERFSHVA---MILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp SHHHHHHHTSSHHHHHHHH---HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred cchhHHHHHccHHHHHHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 6655432111111121111 12222 24566788888877766666666544
No 113
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.92 E-value=0.73 Score=40.44 Aligned_cols=182 Identities=14% Similarity=0.143 Sum_probs=104.3
Q ss_pred hHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcC----cHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCch
Q psy664 82 ALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAG----VCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQ 156 (379)
Q Consensus 82 ~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~ 156 (379)
.+..+.++++ -..+.+-.++..++-++.++ .....+.+.+ ++..+...+.. ..+..+--++++++|++... .
T Consensus 104 ~l~~l~kil~-WP~~~~fPvLDLlRl~~l~p-~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~ 180 (304)
T 3ebb_A 104 QLQILWKAIN-CPEDIVFPALDILRLSIKHP-SVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-A 180 (304)
T ss_dssp HHHHHHHHHT-SCTTTCHHHHHHHHHHTTSH-HHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-H
T ss_pred HHHHHHHHHc-CCHHhHHHHHHHHHHHHcCc-cHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-h
Confidence 5566666663 34455556666666555543 3333333322 23334444443 35666888999999999754 3
Q ss_pred hhHHHhhc--CcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHH--HHHHHhcCchHHHHHHHHh-CcHHHHHHHHHHH
Q psy664 157 QTQVILNC--SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ--IQAVIDANIFPSLIEILQK-AEFKTRKEAAWAI 231 (379)
Q Consensus 157 ~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~--~~~~~~~~~i~~Li~ll~~-~~~~v~~~a~~~l 231 (379)
.++.+... .+++.+...+...+..++..++.++-|++....+. ... ...++..+..++.. .|.+....++-+|
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 44444432 34455555555667899999999999987521100 011 01133444444433 4889999999999
Q ss_pred HHHhcCCCHHHHHHHHHcCChHHHHHhhcc-CCHHHHHH
Q psy664 232 TNATSGGTPDQIRYLIQQGCIEPFCELLTL-LDAKIIQV 269 (379)
Q Consensus 232 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~ 269 (379)
++++ ..+.+..+.....|+-..+-...+. ...+|.+.
T Consensus 259 GtL~-~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 259 GTLI-SDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHHH-TTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHHH-hCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 9998 4555544444444555555555544 34454443
No 114
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.90 E-value=0.14 Score=42.83 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=103.3
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHH-hhcCCChHHHHHHHHHHHHhhc-CCchh
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVE-LLMHDQHKVVSAALRAVGNIVT-GDDQQ 157 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~i~~~al~~L~nl~~-~~~~~ 157 (379)
..+++....+.+++..++|..|+..|+.+ ... ...++.+.. +-..++..|++.+..+++.++. ..++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 35666677777787789999999998887 311 124566666 5567889999999999999884 2222
Q ss_pred hHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcC
Q psy664 158 TQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSG 237 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~ 237 (379)
..++.+.....+++..+|+.|...+.--+........ -.-+++.+-.+..+.+.-||+...|.|..+. .
T Consensus 139 -------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d---p~~ll~iL~~L~~D~s~yVrKSVan~LrD~S-K 207 (240)
T 3l9t_A 139 -------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN---PNEAIRRIADLKEDVSEYVRKSVGNALRDIS-K 207 (240)
T ss_dssp -------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC---HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH-T
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC---HHHHHHHHHHhcCChHHHHHHHHHHHHHHHh-h
Confidence 2567888999999999999998776432221100000 0024566666677788999999999999986 7
Q ss_pred CCHHHHHHHHH
Q psy664 238 GTPDQIRYLIQ 248 (379)
Q Consensus 238 ~~~~~~~~l~~ 248 (379)
.+++-+..+++
T Consensus 208 ~~Pd~V~~~~~ 218 (240)
T 3l9t_A 208 KFPDLVKIELK 218 (240)
T ss_dssp TCHHHHHHHHH
T ss_pred hCHHHHHHHHH
Confidence 78887666554
No 115
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.70 E-value=0.72 Score=47.65 Aligned_cols=276 Identities=13% Similarity=0.108 Sum_probs=142.1
Q ss_pred CCChHHHHhcC-------CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-----CCh-----------
Q psy664 39 NNILYPLIDKP-------KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-----ADP----------- 95 (379)
Q Consensus 39 ~g~i~~Ll~lL-------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~d~----------- 95 (379)
...+++++..+ +++..++..|+.++.++|+...... ......++..+..+|.. .+.
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L-~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV-VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC-SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh-hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence 34566666655 3567799999999999998764322 12234456555555552 111
Q ss_pred -----HHHHHHHHHHHHhc---CCChHHHHHHHhcCcHHHHHH----hhcCC----ChHH-HHHHHHHHHHhhcCCchh-
Q psy664 96 -----DVLADACWAISYLS---DGPNEKIQAVIDAGVCRRLVE----LLMHD----QHKV-VSAALRAVGNIVTGDDQQ- 157 (379)
Q Consensus 96 -----~v~~~a~~aL~~l~---~~~~~~~~~~~~~g~i~~L~~----lL~~~----~~~i-~~~al~~L~nl~~~~~~~- 157 (379)
+-+.....+++.+. ..+.+.....++ .+++.+++ .+... +... ....+.+++.++.+-...
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~ 687 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG 687 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCccc
Confidence 12334445555554 223333333332 24444443 33222 2222 235677788888764321
Q ss_pred -----hHHHhhcCcHHHHHHhhc--CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC-cHHHHHHHHH
Q psy664 158 -----TQVILNCSALMCLLHLIQ--SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA-EFKTRKEAAW 229 (379)
Q Consensus 158 -----~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~-~~~v~~~a~~ 229 (379)
...++ ....+.+...+. ..+..|+..++.++..+...-...+. ..+|.++..+-.. +..-....+|
T Consensus 688 ~~~~p~~~~f-~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~~~~e~~~fL~ 761 (980)
T 3ibv_A 688 SEEVAWLASF-NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSIDMNELVDVLS 761 (980)
T ss_dssp -CCCSHHHHH-HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHCCTTTHHHHHH
T ss_pred CCCCcHHHHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11111 134556666665 45689999999999998765444322 6777777765533 4444556777
Q ss_pred HHHHHhcCCCHHHHHHHHH--cCChHHHHHhhccCC---------HHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHH
Q psy664 230 AITNATSGGTPDQIRYLIQ--QGCIEPFCELLTLLD---------AKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLI 298 (379)
Q Consensus 230 ~l~nl~~~~~~~~~~~l~~--~~~i~~L~~lL~~~d---------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i 298 (379)
.+..++..-..+....+-+ .-++..+..+|..++ ..+++.-+..+..++..+-.. . .+
T Consensus 762 l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~---------v--~~ 830 (980)
T 3ibv_A 762 FISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGS---------I--LF 830 (980)
T ss_dssp HHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTG---------G--GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchh---------h--hc
Confidence 7777764222222221111 123444555565422 135555555555565533100 0 01
Q ss_pred HH--hcc----HHHHHHh-hcCCCHHHHHHHHHHHHHhcCCC
Q psy664 299 EE--CYG----LDKIEFL-QSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 299 ~~--~g~----l~~l~~l-~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
.+ .+. +..+... .+.++...++.|..++.++.+.-
T Consensus 831 s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~ 872 (980)
T 3ibv_A 831 TEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLW 872 (980)
T ss_dssp SHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence 11 122 2333322 23578889999999999887764
No 116
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.69 E-value=0.0064 Score=51.86 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~ 107 (379)
++..|......=....+..++ +++..++..++..| + .+.+..+++++++.|+..+...+
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L--------~----------~~~L~~ll~D~d~~VR~~aA~~l-- 122 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL--------P----------REQLSALMFDEDREVRITVADRL-- 122 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS--------C----------SGGGGGTTTCSCHHHHHHHHHHS--
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC--------C----------HHHHHHHHcCCCHHHHHHHHHhC--
Confidence 344444444432333444444 66666766666431 0 03456667777888887777642
Q ss_pred hcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHH
Q psy664 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACW 187 (379)
Q Consensus 108 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 187 (379)
. .+.+..++++++..++..+... +. .+.+..+++++++.||..++.
T Consensus 123 -~---------------~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa~ 168 (244)
T 1lrv_A 123 -P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAK 168 (244)
T ss_dssp -C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHH
T ss_pred -C---------------HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHHH
Confidence 1 1124455667777777776652 11 112334555666667666665
Q ss_pred H
Q psy664 188 A 188 (379)
Q Consensus 188 ~ 188 (379)
.
T Consensus 169 ~ 169 (244)
T 1lrv_A 169 R 169 (244)
T ss_dssp H
T ss_pred c
Confidence 3
No 117
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.67 E-value=1 Score=46.70 Aligned_cols=267 Identities=10% Similarity=0.065 Sum_probs=147.4
Q ss_pred hCCChHHHHhcC--CCChhHHHHHHHHHHHHhCCCCCCCChHhH----hhhHHHHHHhhcC-----CChHHHHHHHHHHH
Q psy664 38 DNNILYPLIDKP--KNRLSMVRNSVWVLSNLCRGKTPPPDFAKV----APALACLSRLLFH-----ADPDVLADACWAIS 106 (379)
Q Consensus 38 ~~g~i~~Ll~lL--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~l~~L~~lL~~-----~d~~v~~~a~~aL~ 106 (379)
..+++..+..+| +.+..++.-|+-+|.+.....=........ ..++..+.+.-.. .++.++...+.++.
T Consensus 58 sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La 137 (1073)
T 3gjx_A 58 HPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILV 137 (1073)
T ss_dssp CSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHH
Confidence 355666677777 557777778888888877643111222222 2334444443222 34677788888888
Q ss_pred HhcCC--ChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC--Cc-------hh----hHHHhhc--CcHHH
Q psy664 107 YLSDG--PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG--DD-------QQ----TQVILNC--SALMC 169 (379)
Q Consensus 107 ~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~--~~-------~~----~~~~~~~--~~l~~ 169 (379)
.++.. +..+ .++++-+++++.. ++......+++|..+... +. .. .+.+.+. .+++.
T Consensus 138 ~I~k~~~P~~W------p~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~l 210 (1073)
T 3gjx_A 138 QILKQEWPKHW------PTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQL 210 (1073)
T ss_dssp HHHHHHTTTTC------TTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhChhhc------cHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 77732 2222 2456677776653 345567778888877643 10 00 1112111 23333
Q ss_pred HHHhhc-CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHH-HHHHhCcHHHHHHHHHHHHHHhcCCCH---HHHH
Q psy664 170 LLHLIQ-SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLI-EILQKAEFKTRKEAAWAITNATSGGTP---DQIR 244 (379)
Q Consensus 170 L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li-~ll~~~~~~v~~~a~~~l~nl~~~~~~---~~~~ 244 (379)
+..++. ..++.+...+..++.....=- .+..+++.++++.++ ..+ ++++++..|+.+|+.++....+ +.+.
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~ 286 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE 286 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence 444443 345778888888888876422 245677888888874 555 5778999999999999864322 2222
Q ss_pred HHHHcCChHHHHHhh-------------ccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHh-c-------c
Q psy664 245 YLIQQGCIEPFCELL-------------TLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEEC-Y-------G 303 (379)
Q Consensus 245 ~l~~~~~i~~L~~lL-------------~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~-g-------~ 303 (379)
.+.+ +++..+..++ ..+|.+.....+..+..+.+.. ...++.. + +
T Consensus 287 ~lf~-~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~-------------~~lIe~~p~~~~~l~~~ 352 (1073)
T 3gjx_A 287 TLFT-LTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH-------------GQLLEKRLNLREALMEA 352 (1073)
T ss_dssp HHHH-HHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH-------------HHHHHHCGGGHHHHHHH
T ss_pred HHHH-HHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH-------------HHHHhcCccchHHHHHH
Confidence 2221 1222222222 1223344444444444443322 2333321 1 3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy664 304 LDKIEFLQSHENIEIYQKAFDIIEHY 329 (379)
Q Consensus 304 l~~l~~l~~~~~~~v~~~a~~il~~~ 329 (379)
++.+..+..+++.++.+.++.....+
T Consensus 353 l~~ll~~s~~~d~ei~kitf~fW~~L 378 (1073)
T 3gjx_A 353 LHYMLLVSEVEETEIFKICLEYWNHL 378 (1073)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 55566677899999999998665433
No 118
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.62 E-value=0.47 Score=49.41 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=104.2
Q ss_pred hhHHHHHhCCChHHHH---hcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC----CChHHHHHHH
Q psy664 31 SVETMSLDNNILYPLI---DKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH----ADPDVLADAC 102 (379)
Q Consensus 31 ~~r~~i~~~g~i~~Ll---~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~d~~v~~~a~ 102 (379)
.++|.+...|--+.+. +++ +...... .|+++|..+.....| ....+..+..++.+ .++.++..++
T Consensus 344 ~~lDal~~aGT~~a~~~i~~~i~~~~l~~~-ea~~~l~~~~~~~~P------t~e~l~~~~~l~~~~~~~~~~~l~~ta~ 416 (1056)
T 1lsh_A 344 WILDAVPAMATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQQA------TRESLSYARELLNTSFIRNRPILRKTAV 416 (1056)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCC------CHHHHHHHHHHHTCHHHHTCHHHHHHHH
T ss_pred HHHHHhHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHhhccCCC------CHHHHHHHHHHHhCcccccCHHHHHHHH
Confidence 4456666666544433 333 4333332 355555544433212 23355666666664 4577888888
Q ss_pred HHHHHhcC----CChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcC--
Q psy664 103 WAISYLSD----GPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS-- 176 (379)
Q Consensus 103 ~aL~~l~~----~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-- 176 (379)
.+++.+.. +.+.+....+ ..+...+.+.+...+..-+..++++|||+... ..++.|.+++..
T Consensus 417 La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~ 484 (1056)
T 1lsh_A 417 LGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQG 484 (1056)
T ss_dssp HHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSS
T ss_pred HHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCcc
Confidence 88877762 1111000001 11334455555667777889999999998742 345666666632
Q ss_pred ---C--ChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHH--HhCcHHHHHHHHHHHHH
Q psy664 177 ---P--KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEIL--QKAEFKTRKEAAWAITN 233 (379)
Q Consensus 177 ---~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll--~~~~~~v~~~a~~~l~n 233 (379)
. ...++..|+|+|.+++...++.++ +.+..+. ...++++|..|+..|..
T Consensus 485 ~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 485 KSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp SCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 1 256889999999999876665444 3445666 34578999999988876
No 119
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.57 E-value=0.3 Score=50.76 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=90.8
Q ss_pred hHHHHHHhhcC--CChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC-----ChHHHHHHHHHHHHhhcCC
Q psy664 82 ALACLSRLLFH--ADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD-----QHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 82 ~l~~L~~lL~~--~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~i~~~al~~L~nl~~~~ 154 (379)
+.+.+.+.+.. .+....+.+||+++.++..-.+..+.-+=..+++.|+.+.+++ ...+....++++|..+.--
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 45555554443 3589999999999999855433222122235677788777654 2334455668888755311
Q ss_pred chhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhc---CchHHHHHHH----HhCcHHHHHHH
Q psy664 155 DQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA---NIFPSLIEIL----QKAEFKTRKEA 227 (379)
Q Consensus 155 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~i~~Li~ll----~~~~~~v~~~a 227 (379)
....+ .+ ...+..+...+...++.++..||.++..++....+........ ..+..+++.+ ..-+++-...-
T Consensus 558 ~~h~~-~L-~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~l 635 (1073)
T 3gjx_A 558 RAHWK-FL-KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTF 635 (1073)
T ss_dssp HHCHH-HH-HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHH
T ss_pred HhCHH-HH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 11111 11 1356667777888889999999999999986544332110001 1333333322 22356666667
Q ss_pred HHHHHHHhcCCCH
Q psy664 228 AWAITNATSGGTP 240 (379)
Q Consensus 228 ~~~l~nl~~~~~~ 240 (379)
+.+++.+++....
T Consensus 636 yeav~~vi~~~p~ 648 (1073)
T 3gjx_A 636 YEAVGYMIGAQTD 648 (1073)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCC
Confidence 7777777754443
No 120
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.94 E-value=0.11 Score=45.67 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHh--HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHH
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAK--VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~ 129 (379)
.+..+-.++++++|+.... ..+..+. ...+++.+...+.+.+..++..+...+.|++.........-....++..+.
T Consensus 161 ~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 4556778999999998875 3333222 235667777777777899999999999988842110000000111344455
Q ss_pred HhhcC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHH
Q psy664 130 ELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWA 188 (379)
Q Consensus 130 ~lL~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 188 (379)
.+++. .+.+....++-+||++...+.+..+.....|....+.++.....+.-..+++..
T Consensus 240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~ 299 (304)
T 3ebb_A 240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRF 299 (304)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHH
Confidence 55543 588899999999999998876665555555666666666655333333344433
No 121
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.86 E-value=2.5 Score=43.67 Aligned_cols=281 Identities=11% Similarity=-0.017 Sum_probs=152.4
Q ss_pred hCCChHHHHhcC-CC---ChhHHHHHHHHHHHHhCCCCCC----CChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHh
Q psy664 38 DNNILYPLIDKP-KN---RLSMVRNSVWVLSNLCRGKTPP----PDFAKVAPALACLSRLLF-HADPDVLADACWAISYL 108 (379)
Q Consensus 38 ~~g~i~~Ll~lL-~~---~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l 108 (379)
..++......+| ++ +..++.-++-+|.+....-++. ....+...++..+.+.-. ....-++...+.++..+
T Consensus 38 sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l 117 (980)
T 3ibv_A 38 SSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLL 117 (980)
T ss_dssp STTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 345666777777 32 5677777888887776621111 111122334444444111 23467889999998877
Q ss_pred cCC--ChHHHHHHHhcCcHHHHHHhhcCCCh-HHHHHHHHHHHHhhcC----C----ch--h-----hHHHhhc---CcH
Q psy664 109 SDG--PNEKIQAVIDAGVCRRLVELLMHDQH-KVVSAALRAVGNIVTG----D----DQ--Q-----TQVILNC---SAL 167 (379)
Q Consensus 109 ~~~--~~~~~~~~~~~g~i~~L~~lL~~~~~-~i~~~al~~L~nl~~~----~----~~--~-----~~~~~~~---~~l 167 (379)
... +..+ .++++.++.++..++. ......+++|..|... . .. . ++.+.+. .+.
T Consensus 118 ~~~~~p~~W------p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~ 191 (980)
T 3ibv_A 118 FLQLYPSNW------NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV 191 (980)
T ss_dssp HHHHTTTTC------TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhCcccC------chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence 732 1222 2467777777766443 3455566666644321 0 00 0 1111111 013
Q ss_pred HHHHHhh----cCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCC-HHH
Q psy664 168 MCLLHLI----QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT-PDQ 242 (379)
Q Consensus 168 ~~L~~lL----~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~-~~~ 242 (379)
+....+| .+.++.++..++.++.....-- .+..+.+.++++.++.++.. ++++..|+.+|..+++.+. ++.
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~ 267 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLE 267 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhh
Confidence 3333344 3367788899999998875522 24455667888888888854 7999999999999986543 333
Q ss_pred HHHHHHcCChHHHHHhhc--cCCHHHHHHHHHHHHHHHHHcHHhhhhcCC--cc----hHHHHHHHhccHHHHHHhhcCC
Q psy664 243 IRYLIQQGCIEPFCELLT--LLDAKIIQVALNGLENILKLGEEEAKQTGS--VN----PYVVLIEECYGLDKIEFLQSHE 314 (379)
Q Consensus 243 ~~~l~~~~~i~~L~~lL~--~~d~~v~~~al~~L~~l~~~~~~~~~~~~~--~~----~~~~~i~~~g~l~~l~~l~~~~ 314 (379)
...+++.=.+...+..+. .+|.++.+..++.+..+...--.. ..... .. .....+ .+.++.+..+..|+
T Consensus 268 k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l--~~ll~~lL~~~~~~ 344 (980)
T 3ibv_A 268 KLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQL--YNLFPYLIRYLSDD 344 (980)
T ss_dssp HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHH--HHTHHHHHHHHTCS
T ss_pred HHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHH--HHHHHHHHHHhCCC
Confidence 333333201122222222 467777665555544333221111 00000 00 011112 24677777888888
Q ss_pred CHHHHHHHHHHHHHhcC
Q psy664 315 NIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 315 ~~~v~~~a~~il~~~~~ 331 (379)
+.+|...++..+..|..
T Consensus 345 ~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 345 YDETSTAVFPFLSDLLV 361 (980)
T ss_dssp SHHHHHTTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 88998888877776654
No 122
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.84 E-value=0.37 Score=44.64 Aligned_cols=96 Identities=11% Similarity=0.183 Sum_probs=77.6
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHH
Q psy664 176 SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPF 255 (379)
Q Consensus 176 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L 255 (379)
.++...++-|+..|.......|+.... .+..++++..+.|..+|+.|+..|-.+|.. +.+.. +...|
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~k-----iaDvL 105 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPR-----VADIL 105 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHH-----HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhh-----HHHHH
Confidence 345889999999999988888886654 456788999999999999999999999843 44443 36789
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHcHHh
Q psy664 256 CELLTLLDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 256 ~~lL~~~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
..+|..+++.-...+-.+|..++...+..
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dpk~ 134 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDAKG 134 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcChHH
Confidence 99999999888888888888888877654
No 123
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.66 E-value=0.018 Score=49.01 Aligned_cols=57 Identities=12% Similarity=-0.162 Sum_probs=35.5
Q ss_pred CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACW 103 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~ 103 (379)
++..|......-..+.|..++ +++..++..++..+ . . +.+..++++++..|+..+..
T Consensus 87 ~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l------~-~-----------~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 87 DEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL------P-L-----------EQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS------C-T-----------GGGGGGTTCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhC------C-H-----------HHHHHHHcCCCHHHHHHHHH
Confidence 445555555544445666667 77888887777632 1 0 12455667778888888776
No 124
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.46 E-value=0.44 Score=44.13 Aligned_cols=124 Identities=13% Similarity=0.068 Sum_probs=91.6
Q ss_pred CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHH
Q psy664 92 HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLL 171 (379)
Q Consensus 92 ~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~ 171 (379)
.++.....-|+..+..-..+-++..+ .++..++.+.++.+..|+..|++.|..+|.+ +... .+.++|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHH
Confidence 34677888888888766554444433 4678899999999999999999999999976 3333 4568899
Q ss_pred HhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 172 HLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 172 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
++|+..++.-...+-++|..+...++. +.+..++..+..++..+|..++..|..-+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 999988877777777777777655544 45556666666678888888887776544
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.05 E-value=2.8 Score=44.34 Aligned_cols=276 Identities=9% Similarity=-0.014 Sum_probs=144.6
Q ss_pred CChHHHHhcC---CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC-------CChHHHHHHHHHHHHhc
Q psy664 40 NILYPLIDKP---KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-------ADPDVLADACWAISYLS 109 (379)
Q Consensus 40 g~i~~Ll~lL---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~aL~~l~ 109 (379)
.....+...| +.+..++.-|+.+|.+.....=..........+-..++.++.. ....++..++.++..|+
T Consensus 45 ~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia 124 (1204)
T 3a6p_A 45 PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMI 124 (1204)
T ss_dssp TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence 3555554444 4467777788888888765421112222222333344444321 35789999999998887
Q ss_pred CC--ChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcC---C----chhhH----HHhhc--CcHHHHHHhh
Q psy664 110 DG--PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG---D----DQQTQ----VILNC--SALMCLLHLI 174 (379)
Q Consensus 110 ~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~---~----~~~~~----~~~~~--~~l~~L~~lL 174 (379)
.. +..+ .++++.+++++.+ ++...+.++.+|..++.. . ..... .+.+. .+++.+..++
T Consensus 125 ~~d~p~~W------p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL 197 (1204)
T 3a6p_A 125 KREWPQHW------PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTL 197 (1204)
T ss_dssp HHHSTTTC------TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCcccc------hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2222 3577888888876 456677888888888642 0 00111 11111 2233334444
Q ss_pred cC-------------------CChhhHHHHHHHHHHhhcCChHHHHHHHhcC--chHHHHHHHHhCcHHHHHHHHHHHHH
Q psy664 175 QS-------------------PKESIRKEACWAVSNITAGNRQQIQAVIDAN--IFPSLIEILQKAEFKTRKEAAWAITN 233 (379)
Q Consensus 175 ~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~--~i~~Li~ll~~~~~~v~~~a~~~l~n 233 (379)
.+ .+..++..++.++.+...--+ ...+.+.. +++.++.++. +++++..|+.+|..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~ 273 (1204)
T 3a6p_A 198 QENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLI 273 (1204)
T ss_dssp HHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 32 123455666666665433111 22233333 6676665543 57899999999999
Q ss_pred HhcCCC-HHHHHHHHHc---CChHHHHHhh--------ccCCHHHHHHHHHHHHHHHHHcHHhhhhc---CCcchHHHHH
Q psy664 234 ATSGGT-PDQIRYLIQQ---GCIEPFCELL--------TLLDAKIIQVALNGLENILKLGEEEAKQT---GSVNPYVVLI 298 (379)
Q Consensus 234 l~~~~~-~~~~~~l~~~---~~i~~L~~lL--------~~~d~~v~~~al~~L~~l~~~~~~~~~~~---~~~~~~~~~i 298 (379)
++.... ++....++.. ..+..++..+ ++.|.++.+..+..+..+...-...-.+. .....+
T Consensus 274 i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l---- 349 (1204)
T 3a6p_A 274 AVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF---- 349 (1204)
T ss_dssp HHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH----
T ss_pred HHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH----
Confidence 986443 3332222211 0122344433 12234666666666655553211100000 001111
Q ss_pred HHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 299 EECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 299 ~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
.+.++.+..+..|++..+...+..+...+...
T Consensus 350 --~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 350 --GKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp --HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 13356667677778888888777766666554
No 126
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.24 E-value=2.5 Score=38.36 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=89.8
Q ss_pred hhhHHHHHHhhc-----------CCChHHHHHHHHHHHHhcCCChHHHHHHHhc-CcHHHHHHhhcCCChHHHHHHHHHH
Q psy664 80 APALACLSRLLF-----------HADPDVLADACWAISYLSDGPNEKIQAVIDA-GVCRRLVELLMHDQHKVVSAALRAV 147 (379)
Q Consensus 80 ~~~l~~L~~lL~-----------~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~i~~~al~~L 147 (379)
.+++..|+.+|. ..+...+..++.||..+.... .....++.. ..+..+...|.++.+.++..|+..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~-~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSH-HHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcch-hhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455666666663 224688899999999998654 455555554 7899999999999999999999999
Q ss_pred HHhhcCCc-hh-hHHHhh----------cCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChHH------HHHHHhcCc
Q psy664 148 GNIVTGDD-QQ-TQVILN----------CSALMCLLHLIQSP-KESIRKEACWAVSNITAGNRQQ------IQAVIDANI 208 (379)
Q Consensus 148 ~nl~~~~~-~~-~~~~~~----------~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~------~~~~~~~~~ 208 (379)
+.+|.... .. ...+++ ..-...++..|.+. +.+.+..+...|..+..+.++. ...+...|+
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 266 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 266 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh
Confidence 99887653 22 222322 23345566777664 4555554444444455443322 234556677
Q ss_pred hHHHHHHHHhCcHHHH
Q psy664 209 FPSLIEILQKAEFKTR 224 (379)
Q Consensus 209 i~~Li~ll~~~~~~v~ 224 (379)
.+.+-.+=...++++.
T Consensus 267 ~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 267 HQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHHTTSCCHHHH
T ss_pred HHHHHHHhcCCChhHH
Confidence 7766553333344443
No 127
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.84 E-value=3 Score=34.91 Aligned_cols=131 Identities=8% Similarity=0.088 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHHhcCCChHHHHHHHh-cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hh-hHHHhh-------
Q psy664 94 DPDVLADACWAISYLSDGPNEKIQAVID-AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDD-QQ-TQVILN------- 163 (379)
Q Consensus 94 d~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~-~~-~~~~~~------- 163 (379)
+.+.+..++.||..+.... ...+.++. .+.+..+...|.++++.++..++..|+.++..++ .. ...+++
T Consensus 67 ~~~~~~~~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSH-HHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCh-HHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 4677889999999888655 45555555 4789999999999999999999999998886543 12 222221
Q ss_pred ---cCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChH------HHHHHHhcCchHHHHHHHHhCcHHHHH
Q psy664 164 ---CSALMCLLHLIQSP-KESIRKEACWAVSNITAGNRQ------QIQAVIDANIFPSLIEILQKAEFKTRK 225 (379)
Q Consensus 164 ---~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~~~i~~Li~ll~~~~~~v~~ 225 (379)
..-...++..+.+. +.+.+..+...|..+..+.++ ....+...|+.+.+-.+-...++++..
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 12334455566543 344554444444445544332 123455667766665554444544443
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.47 E-value=0.28 Score=38.76 Aligned_cols=76 Identities=7% Similarity=0.017 Sum_probs=57.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH-ENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~-~~~~v~~~a~~il~~~~ 330 (379)
+..|..-|.++++.++..++..|..++..+... |...+.+..+++.|..+... .++.|++++..+|+.+.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~---------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKI---------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH---------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH---------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 445566677889999999999999999986543 45566666677777777764 67899999999999887
Q ss_pred CCCccc
Q psy664 331 GSEEED 336 (379)
Q Consensus 331 ~~~~~~ 336 (379)
.....+
T Consensus 125 ~~f~~~ 130 (163)
T 1x5b_A 125 EEFQKD 130 (163)
T ss_dssp HHTTTC
T ss_pred HHhcCC
Confidence 655444
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.36 E-value=3.1 Score=43.27 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=102.3
Q ss_pred hhHHHHHHHHH----HHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHH
Q psy664 53 LSMVRNSVWVL----SNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRL 128 (379)
Q Consensus 53 ~~~~~~a~~~L----~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 128 (379)
+.+...+.-++ ...|.... .........+...+.+.+...+.+-+..++.+|+|+... ..++.|
T Consensus 409 ~~l~~ta~La~gslV~k~c~~~~-~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l 476 (1056)
T 1lsh_A 409 PILRKTAVLGYGSLVFRYCANTV-SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI 476 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCS-SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence 33444444444 44455442 223333566777777777888888889999999999753 245666
Q ss_pred HHhhcC-------CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc--CCChhhHHHHHHHHHHhhcCChHH
Q psy664 129 VELLMH-------DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ--SPKESIRKEACWAVSNITAGNRQQ 199 (379)
Q Consensus 129 ~~lL~~-------~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~ 199 (379)
..++.. ....++..|+++|.++....+... -+.+.+++. ..++++|..|+.++..- +|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHH---CcCH
Confidence 666642 245688899999999986443322 345777774 44689999999888642 2211
Q ss_pred HHHHHhcCchHHHHHHHHh-CcHHHHHHHHHHHHHHhcCCCH
Q psy664 200 IQAVIDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 200 ~~~~~~~~~i~~Li~ll~~-~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
..+..+...+.. .+.+|.......|.++.....+
T Consensus 546 -------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 546 -------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp -------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred -------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 234555666655 5778888888888888755444
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.18 E-value=0.18 Score=38.77 Aligned_cols=76 Identities=8% Similarity=0.045 Sum_probs=56.6
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG 331 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~ 331 (379)
+..+..-|.++++.++..++..|..++..++.. |...+.+..+++.+..+....++.|++++..++..+..
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~---------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI---------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH---------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH---------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 445555677788999999999999999887543 34455555567777777766789999999999998876
Q ss_pred CCccc
Q psy664 332 SEEED 336 (379)
Q Consensus 332 ~~~~~ 336 (379)
...++
T Consensus 115 ~f~~~ 119 (140)
T 3ldz_A 115 EFKND 119 (140)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 54444
No 131
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.09 E-value=3.6 Score=35.66 Aligned_cols=135 Identities=10% Similarity=0.096 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh--cCCChhhHHHHHHHHHHhhcCChHHHHHHHhc--CchHHH
Q psy664 137 HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI--QSPKESIRKEACWAVSNITAGNRQQIQAVIDA--NIFPSL 212 (379)
Q Consensus 137 ~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~i~~L 212 (379)
..-...|+-.|--++-+ -++--.+++.. .+.|.+++ ....+.+++.|+++|+.-...+|..+..+.+. .++..+
T Consensus 42 ~~~le~aLD~L~ElSHD-i~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHD-YKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGTTS-HHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhh-HHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 33456677777666632 22222333211 23344433 33457899999999999889999999887765 566666
Q ss_pred HHHHHh-------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccC--CHHHHHHHHHHHHHHHH
Q psy664 213 IEILQK-------AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL--DAKIIQVALNGLENILK 279 (379)
Q Consensus 213 i~ll~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~ 279 (379)
+.-|.. ....+++.-+.+|.-|+.. + .+ + ....+..|..++... ++.++..++..+..++.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~-~-~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVT-S-ED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCC-S-TT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcC-h-Hh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 655544 3446788888888887643 2 11 1 134567888887766 89999999999988885
No 132
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.89 E-value=8.7 Score=34.82 Aligned_cols=132 Identities=8% Similarity=0.093 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHHHhcCCChHHHHHHHh-cCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCc-hh-hHHHh--------
Q psy664 94 DPDVLADACWAISYLSDGPNEKIQAVID-AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDD-QQ-TQVIL-------- 162 (379)
Q Consensus 94 d~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~-~~-~~~~~-------- 162 (379)
+.+.+..++.||..+..... ....++. .+++..+...|.++++.++..++..|+.+|...+ .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~-Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKF-GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHH-HHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHH-HHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 46788999999999986653 4555555 4789999999999999999999999998886543 22 22222
Q ss_pred --hcCcHHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChH------HHHHHHhcCchHHHHHHHHhCcHHHHHH
Q psy664 163 --NCSALMCLLHLIQSP-KESIRKEACWAVSNITAGNRQ------QIQAVIDANIFPSLIEILQKAEFKTRKE 226 (379)
Q Consensus 163 --~~~~l~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~------~~~~~~~~~~i~~Li~ll~~~~~~v~~~ 226 (379)
+..-...++..+.+. +.+++..+...|..+..+.++ ....+...|+.+.+-.+-...++.+..+
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 112334455666533 355555544444445554432 1235666677776655444445554433
No 133
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.73 E-value=3.6 Score=34.96 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=78.6
Q ss_pred CchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhh
Q psy664 207 NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK 286 (379)
Q Consensus 207 ~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~ 286 (379)
++++.++.+..+.+.++|+-.+..|...+. ...+... .+++.|..++.++|+.+.+.+..+..++....=.+--
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~-~k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCK-VKVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHH-HCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666788999999999988773 2333222 2477888889889999999999988888765543322
Q ss_pred hcCCcch-HHHHHHH-hccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 287 QTGSVNP-YVVLIEE-CYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 287 ~~~~~~~-~~~~i~~-~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
..+.... ....++. ...-+.+..+.++.+..|+-.|.+++++.-
T Consensus 127 ~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 1111111 1122222 223456677788999999999999999754
No 134
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.49 E-value=8.1 Score=34.92 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh
Q psy664 139 VVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218 (379)
Q Consensus 139 i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~ 218 (379)
.+...+.-+..+....+.. + -.++++.++.+-.+.+..+|+-.+..|...+....+... .+++.|..++.+
T Consensus 41 ~Kl~~L~q~~EL~l~~dps---L-l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d 111 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT---L-LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRD 111 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG---G-GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccCHH---H-HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence 4666677777754432221 1 246888899999888999999999999888764444332 356677888888
Q ss_pred CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC---------------hHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q psy664 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGC---------------IEPFCELLTLLDAKIIQVALNGLENILKL 280 (379)
Q Consensus 219 ~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~---------------i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 280 (379)
.++.+.+.++.+.+++- +...++++..+. -..++.++++.+..++..++..+..++..
T Consensus 112 ~d~~V~K~~I~~~tslY----pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLY----KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp SSHHHHHHHHHHHHHHH----HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH----HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 89999999988888863 333334443332 23455667778889999999998887743
No 135
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.17 E-value=4 Score=36.90 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=79.9
Q ss_pred CchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhh
Q psy664 207 NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK 286 (379)
Q Consensus 207 ~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~ 286 (379)
++++.++.+-.+.+.++|+-.+..|...+. ...+... .+++.|..+|.++|+.+.+.+..+..++....=.+--
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~-~~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACK-RDIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHH-HCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788889888888899999999999998873 2333322 2477888888889999999988888887644322211
Q ss_pred hcCCc----chHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy664 287 QTGSV----NPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 287 ~~~~~----~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~ 330 (379)
..... +.....+. ..-+.|..+.++.+..|+-.|.++++.+.
T Consensus 137 ~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 11111 11222222 23456667788999999999999999754
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=89.96 E-value=1 Score=34.28 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=52.7
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHH-hccHHHHHHhhcCCC--------HHHHHH
Q psy664 251 CIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEE-CYGLDKIEFLQSHEN--------IEIYQK 321 (379)
Q Consensus 251 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~-~g~l~~l~~l~~~~~--------~~v~~~ 321 (379)
+++.|..-|..+++.++..+|..|..++..+... |...+.+ ...++.+.+....++ ..|+.+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~---------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~ 120 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE---------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRET 120 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH---------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH---------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHH
Confidence 3667777888888999999999999999877544 3343433 233344444333322 689999
Q ss_pred HHHHHHHhcCCCc
Q psy664 322 AFDIIEHYFGSEE 334 (379)
Q Consensus 322 a~~il~~~~~~~~ 334 (379)
|..++.-+|+++.
T Consensus 121 AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 121 AHETISAIFSEEN 133 (140)
T ss_dssp HHHHHHHHTCCSS
T ss_pred HHHHHHHHhCcCC
Confidence 9999999998654
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.91 E-value=1.3 Score=35.14 Aligned_cols=76 Identities=12% Similarity=0.063 Sum_probs=59.3
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc------CCCHHHHHHHHHH
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS------HENIEIYQKAFDI 325 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~------~~~~~v~~~a~~i 325 (379)
+..|..-+.+.++.++..++..|..++..+... |...+.+..+++.|..+.. ..+..|++++..+
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~---------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 122 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRR---------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIEL 122 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH---------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH---------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHH
Confidence 455666678889999999999999999987654 4566767777888888875 2468999999999
Q ss_pred HHHhcCCCccc
Q psy664 326 IEHYFGSEEED 336 (379)
Q Consensus 326 l~~~~~~~~~~ 336 (379)
|+.+.....++
T Consensus 123 i~~W~~~f~~~ 133 (171)
T 1juq_A 123 LYSWTMALPEE 133 (171)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHHcCCC
Confidence 99887655444
No 138
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=89.66 E-value=9 Score=33.24 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHHhcCCChHHHHHHH-hcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhc--CcHHHH
Q psy664 94 DPDVLADACWAISYLSDGPNEKIQAVI-DAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC--SALMCL 170 (379)
Q Consensus 94 d~~v~~~a~~aL~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~--~~l~~L 170 (379)
|.+....++..|.-++.+-.-..+.+- +...+..|+ +.....+.+++.|.++|+.....++.....+.+. .++..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 455678888888888877554555443 334555555 4455677899999999999999998887766653 333333
Q ss_pred H----HhhcC---CChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC--cHHHHHHHHHHHHHHh
Q psy664 171 L----HLIQS---PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA--EFKTRKEAAWAITNAT 235 (379)
Q Consensus 171 ~----~lL~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~--~~~v~~~a~~~l~nl~ 235 (379)
. .++.. ....+++.-+.+|.-|+..+... ...-+..|.+++... ++.++..++..+..+.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 3 33322 23466777778887776654221 134557777777777 8999999988888765
No 139
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=89.00 E-value=9.6 Score=40.30 Aligned_cols=209 Identities=12% Similarity=0.059 Sum_probs=119.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHH-hh-cCCChHHHHHHHHHHHHhcCC-----ChHHHHHHHhcCc
Q psy664 52 RLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSR-LL-FHADPDVLADACWAISYLSDG-----PNEKIQAVIDAGV 124 (379)
Q Consensus 52 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL-~~~d~~v~~~a~~aL~~l~~~-----~~~~~~~~~~~g~ 124 (379)
+.+.++.|-..|..+-... +..+.+.. +. .+.+..++.-|+..|.+.... +++.+. .++..+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~-~Ir~~l 94 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV-YLKNSV 94 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH-HHHHHH
Confidence 5556777777777664432 12233333 33 455789999999999876522 333333 334445
Q ss_pred HHHHHHhhcC---CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcC------
Q psy664 125 CRRLVELLMH---DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAG------ 195 (379)
Q Consensus 125 i~~L~~lL~~---~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~------ 195 (379)
+..+...... ....++.....+++.|+..+-.. . =.++++.+.+++.. ++..+..+..++..++..
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-~---Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-H---WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-T---CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-c---chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccc
Confidence 5554443211 35778888888898888542110 0 13677888888866 445567777777777531
Q ss_pred -ChHHHH---HHHhc---CchHHHHHHHHh-------------------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q psy664 196 -NRQQIQ---AVIDA---NIFPSLIEILQK-------------------AEFKTRKEAAWAITNATSGGTPDQIRYLIQQ 249 (379)
Q Consensus 196 -~~~~~~---~~~~~---~~i~~Li~ll~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~ 249 (379)
...... ..+.. .+++.+..++.. .+..++..++.++.+.+...... .+.+.
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~---~i~~~ 246 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS---HITAE 246 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH---HHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH---HHHhc
Confidence 111111 11121 233334444432 23456777888888776554443 22332
Q ss_pred C--ChHHHHHhhccCCHHHHHHHHHHHHHHHHHc
Q psy664 250 G--CIEPFCELLTLLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 250 ~--~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 281 (379)
. .++.++.++. +++++..|+.+|..++...
T Consensus 247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 2 5666776655 5678899999999998643
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.96 E-value=0.75 Score=35.60 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=59.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc------CCCHHHHHHHHHH
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS------HENIEIYQKAFDI 325 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~------~~~~~v~~~a~~i 325 (379)
+..|..-+.+.++.++..++..|..++..+... |...+....+++.|..+.. ..++.|++++..+
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~---------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 120 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR---------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILEL 120 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH---------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH---------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHH
Confidence 445556677889999999999999999987654 4566767777888888775 3578999999999
Q ss_pred HHHhcCCCccc
Q psy664 326 IEHYFGSEEED 336 (379)
Q Consensus 326 l~~~~~~~~~~ 336 (379)
|..+.....++
T Consensus 121 i~~W~~~f~~~ 131 (149)
T 3g2s_A 121 LYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHHhCCC
Confidence 99887654443
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=88.70 E-value=1.4 Score=34.09 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=59.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcC------CCHHHHHHHHHH
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH------ENIEIYQKAFDI 325 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~------~~~~v~~~a~~i 325 (379)
+..|..-|.+.++.++..|+..|..++..++.. |...+.+..+++.|..+... .+..|++++..+
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~---------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 110 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK---------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH---------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH---------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHH
Confidence 445555667889999999999999999986543 55667777788888887753 478999999999
Q ss_pred HHHhcCCCccc
Q psy664 326 IEHYFGSEEED 336 (379)
Q Consensus 326 l~~~~~~~~~~ 336 (379)
|..+......+
T Consensus 111 i~~W~~~f~~~ 121 (148)
T 1mhq_A 111 LFSWTVWFPED 121 (148)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHHcCCC
Confidence 99887655444
No 142
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=87.28 E-value=13 Score=31.58 Aligned_cols=106 Identities=12% Similarity=0.263 Sum_probs=74.6
Q ss_pred ChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCChHHHHHHHHHHH--------HhcCC
Q psy664 41 ILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAIS--------YLSDG 111 (379)
Q Consensus 41 ~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~--------~l~~~ 111 (379)
+++.++.+. +.+.++++..+..+...|..+ ......+++.|..+++++|+.+...++.+.. +++.+
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~ 128 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSL 128 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666655 778899999999999998654 2356778999999999889998888877554 44443
Q ss_pred Ch--HHHHHHHh--cCcHHHHHHhhcCCChHHHHHHHHHHHHhh
Q psy664 112 PN--EKIQAVID--AGVCRRLVELLMHDQHKVVSAALRAVGNIV 151 (379)
Q Consensus 112 ~~--~~~~~~~~--~g~i~~L~~lL~~~~~~i~~~al~~L~nl~ 151 (379)
+. +..+..-+ ..+=..+++++++.+..++..|++.+-.+.
T Consensus 129 ~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 129 MEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 32 00111111 134456777888899999999999988765
No 143
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.62 E-value=1.3 Score=37.03 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=53.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS-HENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~-~~~~~v~~~a~~il~~~~ 330 (379)
+..|..-|.+.++.++..++..|..++...... |...+.+..+++.|..+.. ..++.|++++..+|..+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~---------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQT---------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH---------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH---------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 445555677889999999999999999887553 3445555556666665553 467899999999999875
Q ss_pred CC
Q psy664 331 GS 332 (379)
Q Consensus 331 ~~ 332 (379)
..
T Consensus 118 ~~ 119 (226)
T 3zyq_A 118 HA 119 (226)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 144
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.93 E-value=3.1 Score=34.48 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=52.6
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q psy664 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS-HENIEIYQKAFDIIEHYF 330 (379)
Q Consensus 252 i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~-~~~~~v~~~a~~il~~~~ 330 (379)
+..|..-|.+.++.++..++..|..++...... |...+.+..+++.|..+.. ..+..|++++..+++.+.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~---------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP---------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH---------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH---------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445555677889999999999999999987654 3344445555666665553 467899999999999776
Q ss_pred CC
Q psy664 331 GS 332 (379)
Q Consensus 331 ~~ 332 (379)
..
T Consensus 115 ~~ 116 (220)
T 1dvp_A 115 YA 116 (220)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=81.28 E-value=2.6 Score=32.88 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=52.7
Q ss_pred hHHHHHhhc-cCCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH-HHHhhc---CCCHHHHHHHHHHH
Q psy664 252 IEPFCELLT-LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK-IEFLQS---HENIEIYQKAFDII 326 (379)
Q Consensus 252 i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~-l~~l~~---~~~~~v~~~a~~il 326 (379)
+..|..-|. +.++.++..|+..|..++..+... |...+.+..+++. |..+.. .++..|++++..+|
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~---------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li 125 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR---------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLI 125 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH---------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH---------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 344555565 478899999999999999987543 4556666667776 566553 34579999999999
Q ss_pred HHhcCCC
Q psy664 327 EHYFGSE 333 (379)
Q Consensus 327 ~~~~~~~ 333 (379)
+.+....
T Consensus 126 ~~W~~~f 132 (157)
T 1elk_A 126 QSWADAF 132 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9886543
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=81.01 E-value=4.3 Score=31.30 Aligned_cols=74 Identities=8% Similarity=-0.099 Sum_probs=54.2
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHHHHHHHc
Q psy664 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL------LDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 208 ~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~~~ 281 (379)
.+..|.+-+.+.++.++..|+..|-.++.......-..+....+++.|+.++.. .+..|+..++..+..-...-
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345566667788899999988888887765555555556666778888888853 57799999988887766543
No 147
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=78.94 E-value=16 Score=27.58 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=52.3
Q ss_pred cHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHH-HHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHh
Q psy664 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ-IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 166 ~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~ 235 (379)
++..|.+-|.+.++.++..|+..+-.+....... ...+....++..++.++...++.|+..+...+....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4566778888888888888888877766543333 335556678888888888889999988887777653
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=76.68 E-value=7.7 Score=29.81 Aligned_cols=72 Identities=10% Similarity=-0.078 Sum_probs=53.0
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHHHHHH
Q psy664 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL------LDAKIIQVALNGLENILK 279 (379)
Q Consensus 208 ~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~ 279 (379)
.+..|.+-+.+.++.++..|+..|-.++.......-..+.+..++..|+.++.. .+..|+..++..+..-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345566667888999999999988888765555555566666778888888863 367899888887665443
No 149
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.92 E-value=7.4 Score=30.46 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=66.1
Q ss_pred cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch-hhHHHhhcCcHHH
Q psy664 91 FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ-QTQVILNCSALMC 169 (379)
Q Consensus 91 ~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~ 169 (379)
..+|.......|..+..= . ...+ .++..|...|.+.++.++..|+..|-.++..... ....+....++..
T Consensus 29 ~~~Dw~~~leicD~I~~~---~-~~~k-----eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~e 99 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGST---P-NGAK-----DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATE 99 (163)
T ss_dssp SSCCHHHHHHHHHHHHHS---S-SHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCC---C-ccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Confidence 355666666666655431 1 1111 3467788888999999999999999998876544 4446666788888
Q ss_pred HHHhhcC-CChhhHHHHHHHHHHhh
Q psy664 170 LLHLIQS-PKESIRKEACWAVSNIT 193 (379)
Q Consensus 170 L~~lL~~-~~~~v~~~a~~~l~nl~ 193 (379)
+.+++.. .++.|+..+...+..-+
T Consensus 100 l~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 100 VRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Confidence 8888865 45788888887776654
No 150
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=75.30 E-value=45 Score=34.33 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=108.7
Q ss_pred ChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhc----CCChHHHHHHHHHHH--
Q psy664 75 DFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM----HDQHKVVSAALRAVG-- 148 (379)
Q Consensus 75 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~~~~~i~~~al~~L~-- 148 (379)
.......++.-|+++--+.-.+|+..|-.+|......-+..... ++|.+++.|+ ..+.+-...|+.+|.
T Consensus 127 ~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k 201 (997)
T 1vsy_5 127 ASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIK 201 (997)
T ss_dssp CCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSH
T ss_pred CChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhh
Confidence 34445667888888777888999999999998777544333332 3566666654 345555677777655
Q ss_pred ---HhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCCh------------------------HHHH
Q psy664 149 ---NIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR------------------------QQIQ 201 (379)
Q Consensus 149 ---nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~------------------------~~~~ 201 (379)
..+..+-... ..+++.|++..+..+++|++-+-.+...+..+-. ..+.
T Consensus 202 ~~~~~~~~d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~ 276 (997)
T 1vsy_5 202 KIHRKLMTDYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVE 276 (997)
T ss_dssp HHHHHGGGCHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHH
T ss_pred hhhhHHhcChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 2222221111 2345666776666677777766666555432100 0011
Q ss_pred HHHh-------------cCchHHHHHHHHh-Cc--HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHH
Q psy664 202 AVID-------------ANIFPSLIEILQK-AE--FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAK 265 (379)
Q Consensus 202 ~~~~-------------~~~i~~Li~ll~~-~~--~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~ 265 (379)
...+ .++...++++.++ .+ -+....++..+.++....+.. ....++..+++.+.++.+.
T Consensus 277 ~~~~~~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp~ 351 (997)
T 1vsy_5 277 AVKLAKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHPE 351 (997)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCHH
Confidence 1100 1233333344322 12 344555555555554322100 0112356677788899999
Q ss_pred HHHHHHHHHHHHHHHcH
Q psy664 266 IIQVALNGLENILKLGE 282 (379)
Q Consensus 266 v~~~al~~L~~l~~~~~ 282 (379)
++..++.++..++..-.
T Consensus 352 ~R~~a~~~l~~il~~~k 368 (997)
T 1vsy_5 352 IIHLVVKSLLSTCNKII 368 (997)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887543
No 151
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=72.63 E-value=8 Score=30.54 Aligned_cols=72 Identities=7% Similarity=-0.042 Sum_probs=50.8
Q ss_pred chHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHHHHHH
Q psy664 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL------LDAKIIQVALNGLENILK 279 (379)
Q Consensus 208 ~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~ 279 (379)
.+..|.+-+.+.++.++..|+..|-.++..........+.+..+++.|+.++.. .+..|+..++..+..-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345666777888999999999888887754344444455566778888888752 457888888887765443
No 152
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=70.50 E-value=66 Score=29.61 Aligned_cols=230 Identities=12% Similarity=0.114 Sum_probs=125.1
Q ss_pred HHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhcCC
Q psy664 34 TMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDG 111 (379)
Q Consensus 34 ~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~aL~~l~~~ 111 (379)
...++...+..|+.++ +.|+.-+...-.+|..+-..- ...+..+.+.+-..+.+++.... ..-....+..++.+..+
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf-~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF-LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC-TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 3444555677788888 888877777777777775543 23333344455556666665432 33344666777777655
Q ss_pred -----ChHHHHHHHhcCcHHHHHHhhcCCChHH-HHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC-ChhhHHH
Q psy664 112 -----PNEKIQAVIDAGVCRRLVELLMHDQHKV-VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP-KESIRKE 184 (379)
Q Consensus 112 -----~~~~~~~~~~~g~i~~L~~lL~~~~~~i-~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~ 184 (379)
.++....+ ...|+.+.....-.. -..-..|+..+...++.... +.+..++++- .....++
T Consensus 235 fa~PLKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~--------~vi~~LLk~WP~tns~Ke 301 (449)
T 2npp_B 235 FALPLKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE--------PVVMALLKYWPKTHSPKE 301 (449)
T ss_dssp CCSSCCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHH--------HHHHHHHHTCCSSCHHHH
T ss_pred cCCCCcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHH--------HHHHHHHHhCCCCCchHH
Confidence 22222222 344555655543322 23334555555544444433 2334455443 2344444
Q ss_pred HHH--HHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCChHHHHHhh
Q psy664 185 ACW--AVSNITA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ--QGCIEPFCELL 259 (379)
Q Consensus 185 a~~--~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~--~~~i~~L~~lL 259 (379)
.+. -+..+.. ..+...+.++. .++..+.+++.+.+.+|-..|+....| ......+.+ ..+++.+..-|
T Consensus 302 vlFL~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L 374 (449)
T 2npp_B 302 VMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSL 374 (449)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHH
Confidence 442 2333332 45555554443 577888888999999998888754322 222222211 12345555544
Q ss_pred cc-----CCHHHHHHHHHHHHHHHHHcHHh
Q psy664 260 TL-----LDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 260 ~~-----~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
.. =+..++..+..++..+.+..+..
T Consensus 375 ~~~s~~HWn~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 375 YRNSKTHWNKTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp TSCTTCCSSTTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHCHHH
Confidence 21 14578888888888777766543
No 153
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=65.89 E-value=12 Score=28.96 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=50.8
Q ss_pred hHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHH-HHHhhc---CCCHHHHHHHHHHH
Q psy664 252 IEPFCELLTL-LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK-IEFLQS---HENIEIYQKAFDII 326 (379)
Q Consensus 252 i~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~-l~~l~~---~~~~~v~~~a~~il 326 (379)
+..|..-+.. .++.++..|+..|..+++.+... |...+.+..+++. |..+.. +....|++++..+|
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~---------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li 125 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS---------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFI 125 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH---------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH---------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 3344444543 46777888899999998887554 3445555555543 555553 23568999999999
Q ss_pred HHhcCCCcccc
Q psy664 327 EHYFGSEEEDT 337 (379)
Q Consensus 327 ~~~~~~~~~~~ 337 (379)
..+......++
T Consensus 126 ~~Wa~~F~~~p 136 (152)
T 3rru_A 126 KTWSQGFPGGV 136 (152)
T ss_dssp HHHHTCCSSSC
T ss_pred HHHHHHhCCCC
Confidence 99987655443
No 154
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=65.53 E-value=67 Score=29.08 Aligned_cols=228 Identities=12% Similarity=0.111 Sum_probs=114.8
Q ss_pred HHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhcCC-
Q psy664 35 MSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHAD-PDVLADACWAISYLSDG- 111 (379)
Q Consensus 35 ~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~aL~~l~~~- 111 (379)
..++...+..|+.++ +.|+.-+...-.+|..+-..- ...+..+.+.+-..+.+++...+ -.-....+.+++.+..+
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf-~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF-LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 334444566677777 888877777777777765432 11122222333345555554332 22222444555544432
Q ss_pred ----ChHHHHHHHhcCcHHHHHHhhcCCChH-HHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCC-ChhhHHHH
Q psy664 112 ----PNEKIQAVIDAGVCRRLVELLMHDQHK-VVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP-KESIRKEA 185 (379)
Q Consensus 112 ----~~~~~~~~~~~g~i~~L~~lL~~~~~~-i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a 185 (379)
..+.... ....|+.+-..+.-. .-..-..|+..+...++..... .+..++++- .....++.
T Consensus 203 a~PLkeehk~f-----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~Kev 269 (403)
T 3fga_B 203 ALPLKEEHKIF-----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEV 269 (403)
T ss_dssp CSSCCHHHHHH-----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHH
T ss_pred CCCchHHHHHH-----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH--------HHHHHHHhCCCCCcHHHH
Confidence 1122221 134455554444322 2234444555555444444432 334445442 23344444
Q ss_pred H--HHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHc---CChHHHHHhh
Q psy664 186 C--WAVSNITA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQ---GCIEPFCELL 259 (379)
Q Consensus 186 ~--~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~---~~i~~L~~lL 259 (379)
. .-+..+.. ..+...+.+.. .++..+...+.+.+.+|-..|+.... +. .+..++.. .+++.+..-|
T Consensus 270 lFL~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wn------Ne-~i~~li~~n~~~IlPii~p~L 341 (403)
T 3fga_B 270 MFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWN------NE-YIMSLISDNAAKILPIMFPSL 341 (403)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGG------CH-HHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhc------cH-HHHHHHHHhHHHHHHHHHHHH
Confidence 3 22333333 34555554443 57788888888999999888775432 22 22222211 2344444433
Q ss_pred ----cc-CCHHHHHHHHHHHHHHHHHcHHh
Q psy664 260 ----TL-LDAKIIQVALNGLENILKLGEEE 284 (379)
Q Consensus 260 ----~~-~d~~v~~~al~~L~~l~~~~~~~ 284 (379)
.. =+..++..+..++..+.+.....
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~~l 371 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQKL 371 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCHHH
Confidence 22 26788988988888887765443
No 155
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=65.46 E-value=79 Score=28.61 Aligned_cols=231 Identities=10% Similarity=0.082 Sum_probs=124.2
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCchh
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQ 157 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~~ 157 (379)
....+-.|+.++.++|+.-|......|..+-..-...+..+.+ .+-..+.+++.. ....-....+.++|.|..|-..-
T Consensus 127 d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGfa~P 205 (403)
T 3fga_B 127 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 205 (403)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCC
Confidence 3456778889999999999988888888776544334433332 222334444333 22334557888888887653211
Q ss_pred hHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHhC---cHHHHHHHHHHHHH
Q psy664 158 TQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA---EFKTRKEAAWAITN 233 (379)
Q Consensus 158 ~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~~---~~~v~~~a~~~l~n 233 (379)
.+..-..=+...|+.+...+. ......-..++......++.....++ -.+++.. ++.-..--+.-+..
T Consensus 206 Lkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi--------~~LLk~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 206 LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV--------MALLKYWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp CCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH--------HHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH--------HHHHHhCCCCCcHHHHHHHHHHHH
Confidence 100000012233444444444 33445555555555555554333222 2333332 22222223334555
Q ss_pred HhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHH-----HHHHcHHhhhhcCCcchHHHHHHHhccHHHHH
Q psy664 234 ATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLEN-----ILKLGEEEAKQTGSVNPYVVLIEECYGLDKIE 308 (379)
Q Consensus 234 l~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~-----l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~ 308 (379)
++..-.++..+.+.. -+...+...+.+....|.+.|+....| ++..... .+...+ ...|.
T Consensus 278 iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~---------~IlPii-----~p~L~ 342 (403)
T 3fga_B 278 ILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA---------KILPIM-----FPSLY 342 (403)
T ss_dssp HHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH---------HHHHHH-----HHHHH
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH---------HHHHHH-----HHHHH
Confidence 665556666554432 245666677778888888888766532 2211110 111122 34453
Q ss_pred H-hhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 309 F-LQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 309 ~-l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
+ ..+|=+..|+..|..++..+.+-+
T Consensus 343 ~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 343 RNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 3 456779999999999999877643
No 156
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=64.15 E-value=2.9 Score=43.04 Aligned_cols=189 Identities=13% Similarity=0.081 Sum_probs=101.6
Q ss_pred cHHHHHHhhcCCCh-HHHHH-HHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc-CCChhhHHHHHHHH-----HHhhcC
Q psy664 124 VCRRLVELLMHDQH-KVVSA-ALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ-SPKESIRKEACWAV-----SNITAG 195 (379)
Q Consensus 124 ~i~~L~~lL~~~~~-~i~~~-al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~l-----~nl~~~ 195 (379)
++|.++++.+..+. ++... |..++..++...- ... .. ..++..+.+... +++. .|..++..+ .|+-.-
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~-~~~-~~-~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l 836 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI-RKN-HV-AAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQL 836 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC-CHH-HH-HHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC-CHH-HH-HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHc
Confidence 66666666665544 55555 5566666654321 111 11 113333444444 3345 666665444 343222
Q ss_pred ChHHHHHHHhcCchHHHHHHHHhCc-HHHHHHHHHHHHHHhcCC-CHHHHHHHHH---cCC-----hHHHHHhhccCCHH
Q psy664 196 NRQQIQAVIDANIFPSLIEILQKAE-FKTRKEAAWAITNATSGG-TPDQIRYLIQ---QGC-----IEPFCELLTLLDAK 265 (379)
Q Consensus 196 ~~~~~~~~~~~~~i~~Li~ll~~~~-~~v~~~a~~~l~nl~~~~-~~~~~~~l~~---~~~-----i~~L~~lL~~~d~~ 265 (379)
+.+... .+...++.+|.+.. .+||..|+.+|+-++... .......+++ ... ...+-.-.. ++..
T Consensus 837 ~~~~~~-----~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~-~~~~ 910 (997)
T 1vsy_5 837 TEEEKN-----KILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLS-KTDI 910 (997)
T ss_dssp CTTHHH-----HTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHH-HHCH
T ss_pred CHHHHH-----HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccc-hHHH
Confidence 333222 46678888899999 999999999999997554 4233333322 111 111111001 1113
Q ss_pred HHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q psy664 266 IIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 266 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~~~v~~~a~~il~~~~~~ 332 (379)
.+..+.-+|+.++...+.... .+++..-+ +..|-.-.+++.+ |...+-+.|.+|...
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP----~P~w~P~~-----l~~La~~~~~~~~-i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFP----LPPWIPKN-----LSNLSSWARTSGM-TGNAAKNTISEFKKV 967 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSS----CCTHHHHH-----HHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCC----CCcccHHH-----HHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 455677778888776553310 13444333 4555555555554 888888888888654
No 157
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=62.64 E-value=10 Score=32.10 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=61.6
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh----cC----CChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 132 LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI----QS----PKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 132 L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----~~----~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
+.+.++..+--++++++|+........+.+........+.+.+ .+ .+..++..++..+-|++.......
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~--- 175 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 175 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC---
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc---
Confidence 3345677888999999999976542344444332233333333 11 246788888999999875211000
Q ss_pred HhcCchHHHHHHHHh---------CcHHHHHHHHHHHHHHh
Q psy664 204 IDANIFPSLIEILQK---------AEFKTRKEAAWAITNAT 235 (379)
Q Consensus 204 ~~~~~i~~Li~ll~~---------~~~~v~~~a~~~l~nl~ 235 (379)
.+......+.+.+.. .|.+....++-++++++
T Consensus 176 ~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 176 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 012344455555542 37788899999999987
No 158
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=61.32 E-value=64 Score=26.33 Aligned_cols=133 Identities=8% Similarity=-0.058 Sum_probs=80.9
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhc-CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHH
Q psy664 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF-HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRL 128 (379)
Q Consensus 50 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L 128 (379)
+...+.+..++.++......- ....++.+-.++. .++.++....|.+++.+....++ .+.+.+
T Consensus 66 s~~~E~r~la~~~l~~~~~~~--------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~--------~~~~~i 129 (220)
T 2b6c_A 66 KTEREYQYVAIDLALQNVQRF--------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT--------ELPTIF 129 (220)
T ss_dssp SSSHHHHHHHHHHHHHTGGGC--------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG--------GHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhC--------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH--------HHHHHH
Confidence 455666666666666543211 1133444444554 34567777666556555422221 134557
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy664 129 VELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205 (379)
Q Consensus 129 ~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 205 (379)
.....+++.-+++.|+-.+- ......... -.++.+..++.+++.-|++...|+|..+...+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l--~~~~~~~~~-----~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQL--MLKEKTNQD-----LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTT--TCGGGCCHH-----HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHH--HHHHCCCHH-----HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 77888899988888776442 211111111 12556666788888999999999999999998887776663
No 159
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=60.85 E-value=32 Score=31.41 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=63.8
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc--------CCChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 132 LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ--------SPKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 132 L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--------~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
+....+..+--++++++|++.......+.+........+.+.+. ..+..++..++..+-|++.......
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--- 347 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 347 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 33456778889999999999765433444433223444554442 1246788888888899875211100
Q ss_pred HhcCchHHHHHHHH---------hCcHHHHHHHHHHHHHHh
Q psy664 204 IDANIFPSLIEILQ---------KAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 204 ~~~~~i~~Li~ll~---------~~~~~v~~~a~~~l~nl~ 235 (379)
.+..+...+..++. ..|.+....++-||++++
T Consensus 348 ~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv 388 (425)
T 3pst_A 348 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 388 (425)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 01234556666665 358899999999999997
No 160
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=57.27 E-value=53 Score=29.64 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=48.1
Q ss_pred HhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCC
Q psy664 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGD 154 (379)
Q Consensus 79 ~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~ 154 (379)
....+-.|+.++.++|+.-|......|..+-..-...+..+.+ .+-..+.+.+.. ....-..+.+.++|.|..|-
T Consensus 172 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 172 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 4467788888899999988888888887665433334433332 233445555443 23344567888888888764
No 161
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=55.82 E-value=1.3e+02 Score=27.77 Aligned_cols=257 Identities=10% Similarity=0.064 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhCCCCCC---CChHhHhhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhh
Q psy664 56 VRNSVWVLSNLCRGKTPP---PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELL 132 (379)
Q Consensus 56 ~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL 132 (379)
...+...|..+.....-. ....+....+-.|+.++.++|+.-|......|..+-..-...+..+.+. +-..+.+.+
T Consensus 134 LqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi 212 (449)
T 2npp_B 134 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFI 212 (449)
T ss_dssp HHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 445555555554432111 1233456788999999999999999999888877765433344433322 233344444
Q ss_pred cC-CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChHHHHHHHhcCchH
Q psy664 133 MH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAGNRQQIQAVIDANIFP 210 (379)
Q Consensus 133 ~~-~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~ 210 (379)
.. ....-....+.++|.|..|-..-.+.....=+...|+.|..... ......-..++..+...++.....+
T Consensus 213 ~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v------- 285 (449)
T 2npp_B 213 YETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV------- 285 (449)
T ss_dssp HTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-------
T ss_pred cccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-------
Confidence 33 33344568899999998773211100000011234445555444 3334445555555554444433322
Q ss_pred HHHHHHHhC-cHHHHHH--HHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHH--cHHhh
Q psy664 211 SLIEILQKA-EFKTRKE--AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL--GEEEA 285 (379)
Q Consensus 211 ~Li~ll~~~-~~~v~~~--a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~--~~~~~ 285 (379)
+-.+++.. -....++ -+.-|..++..-.++....+.. -+...+...+.+....|-+.|+..+.|=-.. ..+.
T Consensus 286 -i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n- 362 (449)
T 2npp_B 286 -VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN- 362 (449)
T ss_dssp -HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT-
T ss_pred -HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhc-
Confidence 22333432 1122333 3334555555556666554432 2456666677788888888887665332110 0000
Q ss_pred hhcCCcchHHHHHHHhccHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCC
Q psy664 286 KQTGSVNPYVVLIEECYGLDKIEF-LQSHENIEIYQKAFDIIEHYFGSE 333 (379)
Q Consensus 286 ~~~~~~~~~~~~i~~~g~l~~l~~-l~~~~~~~v~~~a~~il~~~~~~~ 333 (379)
...+...+ ...|.+ ..+|=+..|+..|..++..+-+-+
T Consensus 363 -----~~~IlPii-----~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 363 -----AAKILPIM-----FPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp -----HHHHHHHH-----HHHHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred -----hhhhHHhh-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 00011111 222322 345667788888888887655443
No 162
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=55.68 E-value=33 Score=30.65 Aligned_cols=101 Identities=10% Similarity=0.103 Sum_probs=62.5
Q ss_pred hcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhc--------CCChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 132 LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ--------SPKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 132 L~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--------~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
+....+..+--++++++|+........+.+........+.+.+. ..+..++..++..+-|++....+..
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~--- 284 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 284 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 33456778889999999999765423443432212223333331 1246788888888999875211100
Q ss_pred HhcCchHHHHHHHH---------hCcHHHHHHHHHHHHHHh
Q psy664 204 IDANIFPSLIEILQ---------KAEFKTRKEAAWAITNAT 235 (379)
Q Consensus 204 ~~~~~i~~Li~ll~---------~~~~~v~~~a~~~l~nl~ 235 (379)
.+..+...+.+++. ..|.+....++-++++++
T Consensus 285 ~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~ 325 (362)
T 3l3f_X 285 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 325 (362)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 01234556666666 358899999999999997
No 163
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.77 E-value=27 Score=28.90 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch-hhHHHhhcCcHHHH
Q psy664 92 HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ-QTQVILNCSALMCL 170 (379)
Q Consensus 92 ~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L 170 (379)
.+|.......+..+.. .. ...+ .++..|..-|.+.++.++..|+..|-.++.+... ....+....++..|
T Consensus 23 ~~dw~~ileicD~I~~---~~-~~~k-----~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l 93 (226)
T 3zyq_A 23 ETDWESILQICDLIRQ---GD-TQAK-----YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL 93 (226)
T ss_dssp SCCHHHHHHHHHHHHT---TS-SCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC---CC-ccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH
Confidence 4566666666666542 11 1111 2467788888999999999999999988875444 44556666777878
Q ss_pred HHhhcC-CChhhHHHHHHHHHHhh
Q psy664 171 LHLIQS-PKESIRKEACWAVSNIT 193 (379)
Q Consensus 171 ~~lL~~-~~~~v~~~a~~~l~nl~ 193 (379)
.+++.. .+..|+..++..+..-+
T Consensus 94 ~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 94 KDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHH
Confidence 777743 34677777777766654
No 164
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=52.67 E-value=70 Score=24.30 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=55.5
Q ss_pred HHHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC-
Q psy664 243 IRYLIQQGCIEPFCELLTL------LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN- 315 (379)
Q Consensus 243 ~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~- 315 (379)
...++++|++..+-.-|.- +...++...+.+|.++=- -.+.+.+.|.-..+..+..|+.
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI--------------~~e~Lk~SglGkvv~~l~k~~~e 119 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI--------------HKEHLVTSGVGKIVYFYSINPKE 119 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC--------------CHHHHHHHCHHHHHHHHHHCTTS
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC--------------CHHHhhcCCCCcchhhhhcCCcc
Confidence 3467888888888877653 456899999988887620 1356778887777787887764
Q ss_pred -HHHHHHHHHHHHHhc
Q psy664 316 -IEIYQKAFDIIEHYF 330 (379)
Q Consensus 316 -~~v~~~a~~il~~~~ 330 (379)
+++++.|..+++++.
T Consensus 120 t~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 120 SKEVRASAKALVQKWT 135 (145)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 689999999999764
No 165
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=52.47 E-value=1e+02 Score=25.79 Aligned_cols=143 Identities=9% Similarity=-0.007 Sum_probs=80.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHH-HHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy664 127 RLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMC-LLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205 (379)
Q Consensus 127 ~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~-L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 205 (379)
.+..++.+.. .+.+++..++-++...+.. +.+.. +...+...++..+--+++++.|+-.+..-..+.+.+
T Consensus 60 ~~~ki~~~WP--~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~ 130 (253)
T 3gae_A 60 FANTIRSNWE--IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLES 130 (253)
T ss_dssp HHHHHHHHCS--CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTS
T ss_pred HHHHHHHhCC--ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhc
Confidence 3445543333 3677888888777654322 22222 333344456788999999999986554423444443
Q ss_pred cCchHHHHHHHH--------hCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc---------cCCHHHHH
Q psy664 206 ANIFPSLIEILQ--------KAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT---------LLDAKIIQ 268 (379)
Q Consensus 206 ~~~i~~Li~ll~--------~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---------~~d~~v~~ 268 (379)
+.+...++..+. ..+..++..++..+.|+......+.. +......+.+.+. .+|.+...
T Consensus 131 ~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~y 206 (253)
T 3gae_A 131 NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAY 206 (253)
T ss_dssp HHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHH
T ss_pred chhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhcccccccCCHHHHH
Confidence 333333443331 12556788888888887631100000 0112233444433 24788999
Q ss_pred HHHHHHHHHHHHcH
Q psy664 269 VALNGLENILKLGE 282 (379)
Q Consensus 269 ~al~~L~~l~~~~~ 282 (379)
.++-++++++..++
T Consensus 207 R~LvAlGtL~~~~~ 220 (253)
T 3gae_A 207 RLTVAYGNLATVEP 220 (253)
T ss_dssp HHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhCcH
Confidence 99999999997554
No 166
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=51.01 E-value=57 Score=29.07 Aligned_cols=133 Identities=10% Similarity=0.013 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhcCCchhhHHHhhcCcHH-HHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHH--
Q psy664 140 VSAALRAVGNIVTGDDQQTQVILNCSALM-CLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEIL-- 216 (379)
Q Consensus 140 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~-~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll-- 216 (379)
+.+++-.++-++...+.. +.+. .+...+....+..+--+++++.|+-.+..-..+.+.+..+...++..+
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 777888888877654322 2222 233344455688899999999998654432333332222223333332
Q ss_pred ------HhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc---------cCCHHHHHHHHHHHHHHHHHc
Q psy664 217 ------QKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT---------LLDAKIIQVALNGLENILKLG 281 (379)
Q Consensus 217 ------~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---------~~d~~v~~~al~~L~~l~~~~ 281 (379)
...+..++..++..+.|+......+.. +......+...+. ..|.+....++-+|++++...
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~----~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS----CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 122456788888888887632110000 0112334445444 358899999999999999755
Q ss_pred HH
Q psy664 282 EE 283 (379)
Q Consensus 282 ~~ 283 (379)
+.
T Consensus 329 ~~ 330 (362)
T 3l3f_X 329 PT 330 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 167
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=50.35 E-value=1.5e+02 Score=27.02 Aligned_cols=107 Identities=10% Similarity=-0.010 Sum_probs=67.2
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC--------CChHHHHHHHHHHHHhhcCCchhhHH
Q psy664 89 LLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH--------DQHKVVSAALRAVGNIVTGDDQQTQV 160 (379)
Q Consensus 89 lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~i~~~al~~L~nl~~~~~~~~~~ 160 (379)
.+.+..+..+..+++++.|+-.+..-....+........+++.+.. .+..++..+...+-|++.......
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~-- 347 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN-- 347 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC--
T ss_pred hcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc--
Confidence 3445568899999999999998874344434322334556655532 245677788888888875311100
Q ss_pred HhhcCcHHHHHHhhc---------CCChhhHHHHHHHHHHhhcCChH
Q psy664 161 ILNCSALMCLLHLIQ---------SPKESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 161 ~~~~~~l~~L~~lL~---------~~~~~v~~~a~~~l~nl~~~~~~ 198 (379)
.+..+++.+...+. ..+.+....++-+++++....+.
T Consensus 348 -~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 348 -SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp -SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred -chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 01234555666655 24788899999999999765444
No 168
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.60 E-value=28 Score=28.59 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=59.9
Q ss_pred cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCch-hhHHHhhcCcHHH
Q psy664 91 FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQ-QTQVILNCSALMC 169 (379)
Q Consensus 91 ~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~ 169 (379)
.++|.....+.+..+.. .+ ...+ .++..|...|.+.++.++..|+..|-.++.+... ....+.+..++..
T Consensus 19 ~~~dw~~~leicd~i~~---~~-~~~k-----~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~ 89 (220)
T 1dvp_A 19 LEPDWPSILLICDEINQ---KD-VTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEM 89 (220)
T ss_dssp SSCCHHHHHHHHHHHHT---TS-SCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHH
T ss_pred CCcCHHHHHHHHHhhcC---CC-cCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHH
Confidence 34566665555555542 11 1111 2466777788999999999999999998876544 3355666677887
Q ss_pred HHHhhcC-CChhhHHHHHHHHHHh
Q psy664 170 LLHLIQS-PKESIRKEACWAVSNI 192 (379)
Q Consensus 170 L~~lL~~-~~~~v~~~a~~~l~nl 192 (379)
|.+++.+ .+..|++.++..+..-
T Consensus 90 l~~l~~~~~~~~Vk~kil~li~~W 113 (220)
T 1dvp_A 90 FSSFLESTPHENVRQKMLELVQTW 113 (220)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHH
Confidence 7777753 3466666666555544
No 169
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=48.39 E-value=43 Score=25.29 Aligned_cols=70 Identities=13% Similarity=0.110 Sum_probs=48.5
Q ss_pred CchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhc---cCC--------HHHHHHHHHHHH
Q psy664 207 NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT---LLD--------AKIIQVALNGLE 275 (379)
Q Consensus 207 ~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~---~~d--------~~v~~~al~~L~ 275 (379)
.+++.|.+-|.+.++.++.-|+.+|-.++..|++.....+.++ +..+-.+.+ .+| ..|+..|-.++.
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~--~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN--SVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT--THHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh--HHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 3566778888888899999999999999988988888887765 222332321 112 367777766655
Q ss_pred HHH
Q psy664 276 NIL 278 (379)
Q Consensus 276 ~l~ 278 (379)
-|.
T Consensus 127 ll~ 129 (140)
T 1vdy_A 127 AIF 129 (140)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
No 170
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.97 E-value=54 Score=25.23 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=63.0
Q ss_pred cCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC-CChHHHHHHHHHHHHhhcCCch-hhHHHhhcCcHH
Q psy664 91 FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQ-QTQVILNCSALM 168 (379)
Q Consensus 91 ~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~i~~~al~~L~nl~~~~~~-~~~~~~~~~~l~ 168 (379)
.++|.......|..+..= ..... .++..|...|.+ .++.++..|+..|-.++.+... ....+.+..++.
T Consensus 30 ~~~Dw~~~leicD~I~~~---~~~~k------~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~ 100 (157)
T 1elk_A 30 QSEDWALNMEICDIINET---EEGPK------DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVE 100 (157)
T ss_dssp SSCCHHHHHHHHHHHHHS---SSHHH------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCcCHHHHHHHHHHHhCC---CccHH------HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHH
Confidence 355666666666655431 11111 346778888874 7899999999999998876544 444566778888
Q ss_pred H-HHHhhcC---CChhhHHHHHHHHHHhh
Q psy664 169 C-LLHLIQS---PKESIRKEACWAVSNIT 193 (379)
Q Consensus 169 ~-L~~lL~~---~~~~v~~~a~~~l~nl~ 193 (379)
. |++++.. ++..|++.++..+..-+
T Consensus 101 e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 101 SVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 7 7888742 23578888887776653
No 171
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=42.32 E-value=1.1e+02 Score=23.18 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHHHHHhcCcHHHHHHhhcC------CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC--hhhHHHHH
Q psy664 115 KIQAVIDAGVCRRLVELLMH------DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK--ESIRKEAC 186 (379)
Q Consensus 115 ~~~~~~~~g~i~~L~~lL~~------~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~ 186 (379)
....+++.|++..+-.-|.. ++..+++..+.+|.++- -..+.+.+.|+-..+.-+-++++ +.+++-|-
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 45667888888888877763 57889999999999873 33566777777777776666665 67788777
Q ss_pred HHHHHh
Q psy664 187 WAVSNI 192 (379)
Q Consensus 187 ~~l~nl 192 (379)
..+..-
T Consensus 129 ~Li~~W 134 (145)
T 2xpp_A 129 ALVQKW 134 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
No 172
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=39.44 E-value=83 Score=25.98 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCChHHHHHHHH----HHHHhhcC--CchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChH
Q psy664 125 CRRLVELLMHDQHKVVSAALR----AVGNIVTG--DDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ 198 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~----~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 198 (379)
.+.+...+.+++.-.++.++. .+..+... ++... ..+++.+...+.+++.-|++.+.|+|..+...+++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~-----~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKI-----SDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHH-----HHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhH-----HHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 455667788899999988888 55552211 11111 23566777788899999999999999999887877
Q ss_pred HHHHHHh
Q psy664 199 QIQAVID 205 (379)
Q Consensus 199 ~~~~~~~ 205 (379)
.....++
T Consensus 185 ~~~~al~ 191 (235)
T 1t06_A 185 LHEKAVE 191 (235)
T ss_dssp GHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 173
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=37.57 E-value=65 Score=26.56 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=54.3
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHH
Q psy664 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAV 203 (379)
Q Consensus 124 ~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 203 (379)
..+.+.....+++.-+++.|+-.+- ......... ..++.+..++.+++.-|++...|+|..+...+++....+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l--~~~~~~d~~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQL--KYKQKMDEE-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTT--TCGGGCCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHH--HHHhCCCHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3456677788899988888876542 221111111 234566677888889999999999999999999887777
Q ss_pred HhcC
Q psy664 204 IDAN 207 (379)
Q Consensus 204 ~~~~ 207 (379)
++.+
T Consensus 205 l~~~ 208 (232)
T 3jxy_A 205 VQNN 208 (232)
T ss_dssp HHHS
T ss_pred HHHC
Confidence 6653
No 174
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=32.67 E-value=1.8e+02 Score=22.72 Aligned_cols=72 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHcCChHHHHHhhcc------CCHHHHHHHHHHHHHHHHHcHHhhhhcCCcchHHHHHHHhccHHHHHHhhcCCC--
Q psy664 244 RYLIQQGCIEPFCELLTL------LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN-- 315 (379)
Q Consensus 244 ~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~i~~~g~l~~l~~l~~~~~-- 315 (379)
..+++.|++..+-.-|.- +...++...+.+|.. .+.-.+.+.+.|.=..+..+..|+.
T Consensus 70 ~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~--------------lPI~~e~Lk~SglGkvV~~l~k~~~et 135 (170)
T 3nfq_A 70 DTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALND--------------LPVKTEHLKESGLGRVVIFYTKSKRVE 135 (170)
T ss_dssp HHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHT--------------SCCCHHHHHHHSHHHHHHHHHHCTTSC
T ss_pred HHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHH--------------CCCCHHHHhhCCCCceeeehhcCCccc
Q ss_pred HHHHHHHHHHHHHh
Q psy664 316 IEIYQKAFDIIEHY 329 (379)
Q Consensus 316 ~~v~~~a~~il~~~ 329 (379)
+++++.|..+++.+
T Consensus 136 ~~nkrla~~Li~~W 149 (170)
T 3nfq_A 136 AQLARLAEKLIAEW 149 (170)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 175
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=30.63 E-value=2.1e+02 Score=23.07 Aligned_cols=139 Identities=12% Similarity=0.020 Sum_probs=84.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhcCC-ChHHHHHHHhcCcHHHHHHhhc-CCChHHHHHHHHHHHHhhcCCchhhHHH
Q psy664 84 ACLSRLLFHADPDVLADACWAISYLSDG-PNEKIQAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNIVTGDDQQTQVI 161 (379)
Q Consensus 84 ~~L~~lL~~~d~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~al~~L~nl~~~~~~~~~~~ 161 (379)
..+..+..++.-+.+.-++..+...... .++. ++.+-.++. -++..+....+.++++++...+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 4455666777788888888888766422 2111 222222333 35666766655777777643322
Q ss_pred hhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 162 LNCSALMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 162 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
.+.+.+.....+++.-+++.|+-.+..-.. ++++ . +++.+-.++.+.+.-|++.+.|+|..+. ..++
T Consensus 124 ---~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~---~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~-k~~~ 191 (220)
T 2b6c_A 124 ---ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQD---L-----LKKAIIYDRTTEEFFIQKAIGWSLRQYS-KTNP 191 (220)
T ss_dssp ---GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHH---H-----HHHHHHHTTTCCCHHHHHHHHHHHHHHT-TTCH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHH---H-----HHHHHHHhCCChHHHHHHHHHHHHHHHH-hhCH
Confidence 234567788889998888888764422111 1111 1 2333344667788999999999999986 5666
Q ss_pred HHHHHHHH
Q psy664 241 DQIRYLIQ 248 (379)
Q Consensus 241 ~~~~~l~~ 248 (379)
+....+++
T Consensus 192 ~~v~~fl~ 199 (220)
T 2b6c_A 192 QWVEELMK 199 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 65554443
No 176
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=29.62 E-value=3.9e+02 Score=26.63 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=67.1
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcC---CChHHHHHHHHHHHHhhc---C
Q psy664 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMH---DQHKVVSAALRAVGNIVT---G 153 (379)
Q Consensus 80 ~~~l~~L~~lL~~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~---~~~~i~~~al~~L~nl~~---~ 153 (379)
.-+.|.+...+.+.+..+...+..++.+|+.-.+.+.+.+ -.++++.+..-|+. .++.-...|+.+|..++. .
T Consensus 338 ~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV-lP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 338 EIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI-YDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH-HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee-hHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 3456666667779999999999999999997655344433 35577788888877 455556667777776652 1
Q ss_pred CchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 154 DDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 154 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
...++..+. .++..++.-++..|+.--..+...+..++
T Consensus 417 ~~~yr~hl~--~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 417 DKLYRVHIT--NVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp STTGGGHHH--HHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHH--HHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 222222221 22333333344555555555566665553
No 177
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=28.94 E-value=67 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHHHhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCC
Q psy664 295 VVLIEECYGLDKIEFLQSH-ENIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 295 ~~~i~~~g~l~~l~~l~~~-~~~~v~~~a~~il~~~~~~ 332 (379)
.+.+.+.++=..+..|..| ++++|...|-.++..+-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 4788888888888888887 9999999999999987653
No 178
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=27.20 E-value=78 Score=26.04 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=81.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhcC-CChHHHHHHHhcCcHHHHHHhhc-CCChHHHHHH-HHHHHHhhcCCchhhHHH
Q psy664 85 CLSRLLFHADPDVLADACWAISYLSD-GPNEKIQAVIDAGVCRRLVELLM-HDQHKVVSAA-LRAVGNIVTGDDQQTQVI 161 (379)
Q Consensus 85 ~L~~lL~~~d~~v~~~a~~aL~~l~~-~~~~~~~~~~~~g~i~~L~~lL~-~~~~~i~~~a-l~~L~nl~~~~~~~~~~~ 161 (379)
.+..+..++..+.+.-|+..+..... ..+ ..++.+-.++. .++..+.... -.+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~---------~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINE---------THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCG---------GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 45556666667777777666653321 111 12233333333 3566655443 3556665543322
Q ss_pred hhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhc-CChHHHHHHHhcCchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Q psy664 162 LNCSALMCLLHLIQSPKESIRKEACWAVSNITA-GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTP 240 (379)
Q Consensus 162 ~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~ 240 (379)
...+.+.....+++.-+++.|+-.+..... .+++ .+++.+..++.+.+.-|++...|+|..+. ..++
T Consensus 131 ---~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~-k~~p 198 (232)
T 3jxy_A 131 ---LISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYA-KTNP 198 (232)
T ss_dssp ---GGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHT-TTCH
T ss_pred ---HHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hhCH
Confidence 244667788889998888888755422111 2211 23344556677889999999999999986 6677
Q ss_pred HHHHHHHHc
Q psy664 241 DQIRYLIQQ 249 (379)
Q Consensus 241 ~~~~~l~~~ 249 (379)
+....+++.
T Consensus 199 ~~v~~fl~~ 207 (232)
T 3jxy_A 199 DVVWEYVQN 207 (232)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655543
No 179
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=27.06 E-value=2e+02 Score=21.58 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHH
Q psy664 135 DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIE 214 (379)
Q Consensus 135 ~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ 214 (379)
+.+.|..-+.+++.|.- ..+ .++..+.+.+....+.-+..++.++-.++.............++.+.+.+
T Consensus 23 Sk~~I~~LT~~a~~~~~-----~a~-----~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~ 92 (144)
T 1sz9_A 23 SRPIITTLTKLAEENIS-----CAQ-----YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKR 92 (144)
T ss_dssp CHHHHHHHHHHHHHTGG-----GHH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34456665666666532 222 23455666676677888889999988887643333455666778888888
Q ss_pred HHHhCcHHHHHHHHHHHHH
Q psy664 215 ILQKAEFKTRKEAAWAITN 233 (379)
Q Consensus 215 ll~~~~~~v~~~a~~~l~n 233 (379)
.....++.+|......+.-
T Consensus 93 ~~~~~d~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 93 TYLLVDNTTRTKLINMFKL 111 (144)
T ss_dssp HHHTSCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 7777787877766665544
No 180
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.03 E-value=2.4e+02 Score=22.52 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=74.3
Q ss_pred CChHHHHhcC-------CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhc
Q psy664 40 NILYPLIDKP-------KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA---DPDVLADACWAISYLS 109 (379)
Q Consensus 40 g~i~~Ll~lL-------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~aL~~l~ 109 (379)
..+|.++.++ -.+.......+.....|..++.- .-......++|.++.++-.. ...+|..|+..++.++
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l-~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHV-FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTC-CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 3556666555 23566667777777778777632 33334567888888876432 2379999999999998
Q ss_pred CCChHHHHHHHhcCcHHHHHHhhcCC--ChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhh
Q psy664 110 DGPNEKIQAVIDAGVCRRLVELLMHD--QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI 174 (379)
Q Consensus 110 ~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 174 (379)
..-..... -++..+...+.+.+.++ ......-|+..|..+.. ..++.-++|.+....
T Consensus 119 ~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~-------~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 119 DTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK-------NVVNTVIREHAEEYK 177 (196)
T ss_dssp HHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH-------HHHHTHHHHHHHHHH
T ss_pred HHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH-------HHHHHhhhcCHHHHH
Confidence 43111111 12234555666665553 45566778888876642 123333456665555
No 181
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=26.37 E-value=1.4e+02 Score=21.94 Aligned_cols=59 Identities=8% Similarity=0.084 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy664 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193 (379)
Q Consensus 125 i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~l~nl~ 193 (379)
+...++-|....+.|+..+.|++.+.-. ... ++..+.+.+....+.-|...+.++..+.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~~~~-----a~~-----iv~~i~~~l~~~~~~~KL~~LYLindIl 67 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHHRKH-----AGP-----IVSVWHRELRKAKSNRKLTFLYLANDVI 67 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHTGGG-----HHH-----HHHHHHHHHHHSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 3444555667788899999999987432 221 3344556665555666777777777764
No 182
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=26.13 E-value=4.9e+02 Score=25.97 Aligned_cols=119 Identities=10% Similarity=0.026 Sum_probs=73.6
Q ss_pred CchhHHHHHhCCChHHHHhcC-CCChhHHHHHHHHHHHHhCCCCCCCChHhHhhhHHHHHHhhcC---CChHHHHHHHHH
Q psy664 29 HPSVETMSLDNNILYPLIDKP-KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH---ADPDVLADACWA 104 (379)
Q Consensus 29 ~~~~r~~i~~~g~i~~Ll~lL-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~d~~v~~~a~~a 104 (379)
.++.++.+++. +.|.++.-+ +.+..+...+..+|.+||.-. |.-...+..+++..+-.-|.. ..+.-...++.+
T Consensus 329 t~~~~~~fV~~-l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~ 406 (799)
T 1vsy_4 329 TSFCHEEIVEI-FLNIISLGSQNKNPDIANYYISCFAYLLELD-PSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQ 406 (799)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-CCccceehHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 55556666552 222222223 888888899999999999976 433355666777777777766 456666666777
Q ss_pred HHHhc----CCChHHHHHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhc
Q psy664 105 ISYLS----DGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152 (379)
Q Consensus 105 L~~l~----~~~~~~~~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~ 152 (379)
|..++ ... ..+..+. .++..++.-++.+|+.-...++..+..++.
T Consensus 407 l~~~~r~lv~~~-~yr~hl~--~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 407 FTRVIRFIVMDK-LYRVHIT--NVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHTTHHHHTTST-TGGGHHH--HHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-ccHHHHH--HHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 76554 221 1222111 234444455566788877888888888765
No 183
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=25.75 E-value=1.8e+02 Score=23.28 Aligned_cols=130 Identities=13% Similarity=0.106 Sum_probs=73.2
Q ss_pred hhhHHHHHHhhc------CCChHHHHHHHHHHHHhcCCChHHHHHHHhcCcHHHHHHhhcCC---ChHHHHHHHHHHHHh
Q psy664 80 APALACLSRLLF------HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD---QHKVVSAALRAVGNI 150 (379)
Q Consensus 80 ~~~l~~L~~lL~------~~d~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~i~~~al~~L~nl 150 (379)
...+|.+++++. ..|.......+.....|..++.-..+..+ ...+|.++.++-.. ...++..|...++.|
T Consensus 39 ~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl-H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL-HQILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH-HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH-HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 347888887764 24667777777777777766543322222 23677777776432 337999999999999
Q ss_pred hcCCchhhHHHhhcCcHHHHHHhhcCCC--hhhHHHHHHHHHHhhcCChHHHHHHHhcCchHHHHHHHHh
Q psy664 151 VTGDDQQTQVILNCSALMCLLHLIQSPK--ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218 (379)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~i~~Li~ll~~ 218 (379)
+..-..... -+...+...+.+.+.+++ ...+.-|.+.+..+ .++.++. -++|.+-...+.
T Consensus 118 ~~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l---G~~~vr~----~llP~l~~~~~~ 179 (196)
T 4atg_A 118 YDTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL---SKNVVNT----VIREHAEEYKRT 179 (196)
T ss_dssp HHHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CHHHHHT----HHHHHHHHHHHH
T ss_pred HHHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh---HHHHHHH----hhhcCHHHHHHH
Confidence 853111101 112234555666665543 45556666666655 2343332 244665555443
No 184
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=25.21 E-value=3.7e+02 Score=24.10 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=50.5
Q ss_pred HHHHhcCcHHHHHHhhcCCChHHHHHHHHHHHHhhcCCchhhHHHhhcCcHHHHHHhhcCCC-hhhHHHHHHHHHHhhcC
Q psy664 117 QAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPK-ESIRKEACWAVSNITAG 195 (379)
Q Consensus 117 ~~~~~~g~i~~L~~lL~~~~~~i~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~~l~nl~~~ 195 (379)
+..++..++..|+.+++++|+.-+.....+|..+-..-...+.. +...+-..+.+.+.... ..=..+...+++.+..|
T Consensus 168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~-Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIng 246 (392)
T 2jak_A 168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAY-IRKQINNIFYRFIYETEHHNGIAELLEILGSIING 246 (392)
T ss_dssp TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 44455678999999999999998888888887765433333332 22233445666664432 33455777777777665
Q ss_pred C
Q psy664 196 N 196 (379)
Q Consensus 196 ~ 196 (379)
.
T Consensus 247 f 247 (392)
T 2jak_A 247 F 247 (392)
T ss_dssp C
T ss_pred c
Confidence 4
No 185
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=22.38 E-value=2e+02 Score=21.41 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=58.1
Q ss_pred CchHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCChHHHHHhhccCCHHHHHHHHHHHHHHHHHcHHhhh
Q psy664 207 NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK 286 (379)
Q Consensus 207 ~~i~~Li~ll~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~ 286 (379)
.++|.|+..|++.+-.+...++-.|... ... +++.+...|.++|..-+..++..+. ...+..
T Consensus 31 p~lp~LL~WLQD~NWPvA~~i~~~L~~~----~~~---------l~p~I~~vl~s~D~~W~ywil~~lv---~~~~~~-- 92 (134)
T 3ut4_A 31 PIIFDLLKWLQDYNWPIAKDILPVVVLH----QSI---------AMPHILTILQGNDIMWKYWVIKLMI---PYLIYP-- 92 (134)
T ss_dssp HHHHHHHGGGSCTTSTTHHHHHHHHHHT----HHH---------HHHHHHHHHHSSCHHHHHHHHHHHG---GGCCHH--
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHc----cHh---------hHHHHHHHHHcCChHHHHHHHHHHH---HcCCHH--
Confidence 3567778888877766666666666542 112 2556666778888776666554433 221111
Q ss_pred hcCCcchHHHHHHHhccHHHHHHhhcCC-----CHHHHHHHHHHHHHhcCC
Q psy664 287 QTGSVNPYVVLIEECYGLDKIEFLQSHE-----NIEIYQKAFDIIEHYFGS 332 (379)
Q Consensus 287 ~~~~~~~~~~~i~~~g~l~~l~~l~~~~-----~~~v~~~a~~il~~~~~~ 332 (379)
....+ ...|+++...+ .+++...|..||++||.+
T Consensus 93 -------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 -------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp -------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred -------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 11122 45566677664 578999999999999874
Done!