RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy664
(379 letters)
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 418 bits (1077), Expect = e-144
Identities = 197/378 (52%), Positives = 253/378 (66%), Gaps = 25/378 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYP---L 45
QT++V+DAGAVP+FIQLL S ED V +V + L L P L
Sbjct: 149 QTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGL 207
Query: 46 IDKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAI 105
+ +SM+RN+ W LSNLCRGK PPPD++ ++ AL L++L++ DP+VL DACWAI
Sbjct: 208 LLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI 267
Query: 106 SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCS 165
SYLSDGPNEKIQAV+D G+ RLVELL H+ K+ + ALR+VGNIVTG D QTQVI+NC
Sbjct: 268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG 327
Query: 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRK 225
AL L+ SPKE+IRKEACW +SNITAGN +QIQAVIDAN+ P LI +L AE+K +K
Sbjct: 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387
Query: 226 EAAWAITNATSGGT--PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE- 282
EA WAI+NATSGG PD IRYL+ QG I+P C+LL ++D KII+VAL+ +ENILK+GE
Sbjct: 388 EACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEEDTRVAPC 342
+ + ++N Y V +E+ G+D I LQ N IY KA+ IIE +FG E+ +AP
Sbjct: 448 DRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPE 507
Query: 343 VTHDASGAQEFTFAGATQ 360
+ FTF
Sbjct: 508 TAGNT-----FTFGSNVN 520
Score = 78.0 bits (192), Expect = 1e-15
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 4/216 (1%)
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLA-DACWAISYLSDGPNEKIQAVIDAGV 124
L + +PP A + + D+L +A WA++ ++ G ++ + V+DAG
Sbjct: 99 LSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGA 158
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS--PKESIR 182
++LL + V A+ A+GNI + +L C AL LL L+ S S+
Sbjct: 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISML 218
Query: 183 KEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQ 242
+ A W +SN+ G + P L +++ + + +A WAI+ S G ++
Sbjct: 219 RNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS-YLSDGPNEK 277
Query: 243 IRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
I+ ++ G ELL+ AKI AL + NI+
Sbjct: 278 IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313
Score = 75.3 bits (185), Expect = 7e-15
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 106 SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVS-AALRAVGNIVTGDDQQTQVILNC 164
LS + IQ VIDAGV R VE + Q ++ A A+ NI +G QQT+V+++
Sbjct: 97 KLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA 156
Query: 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ--KAEFK 222
A+ + L+ S ++ +R++A WA+ NI + V+ L+ +L
Sbjct: 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHIS 216
Query: 223 TRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVAL 271
+ A W ++N G P I Q + +L+ D +++ A
Sbjct: 217 MLRNATWTLSNLCRGKNPPPDWSNISQA-LPILAKLIYSRDPEVLVDAC 264
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 109 bits (274), Expect = 3e-29
Identities = 42/109 (38%), Positives = 65/109 (59%)
Query: 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145
L LL +D +V +A WA+S LS G N+ IQAV++AG LV+LL + +VV AAL
Sbjct: 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALW 71
Query: 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA 194
A+ N+ G + ++L + L++L+ S E I+K A A+SN+ +
Sbjct: 72 ALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 103 bits (259), Expect = 4e-27
Identities = 37/120 (30%), Positives = 58/120 (48%)
Query: 117 QAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS 176
+AVI AG LV LL V A A+ N+ G++ Q ++ L L+ L++S
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 177 PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
E + K A WA+ N+ AG V++A P L+ +L + +K A A++N S
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 92.0 bits (229), Expect = 9e-23
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218
+ ++ L L+ L+ S E++++EA WA+SN++AGN IQAV++A P+L+++L+
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277
+ + K A WA+ N +G D +++ G + LL + I + A L N+
Sbjct: 61 EDEEVVKAALWALRNLAAGP-EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118
Score = 82.0 bits (203), Expect = 4e-19
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 201 QAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT 260
+AVI A P+L+ +L ++ ++EAAWA++N ++G D I+ +++ G + +LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59
Query: 261 LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQ 320
D ++++ AL L N+ E+ ++ E G+ K+ L N +I +
Sbjct: 60 SEDEEVVKAALWALRNLAAGPEDNKL----------IVLEAGGVPKLVNLLDSSNEDIQK 109
Query: 321 KAFDIIE 327
A +
Sbjct: 110 NATGALS 116
Score = 45.8 bits (109), Expect = 2e-06
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 29/108 (26%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
+ V++AG +P +QLL S E+ +V+ ++W
Sbjct: 41 NIQAVVEAGGLPALVQLLKSEDEE-----------------------------VVKAALW 71
Query: 62 VLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLS 109
L NL G A + L LL ++ D+ +A A+S L+
Sbjct: 72 ALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
Score = 27.7 bits (62), Expect = 5.3
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 29/68 (42%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+V++AG VP + LL S +ED + +N+
Sbjct: 82 DNKLIVLEAGGVPKLVNLLDSSNED-----------------------------IQKNAT 112
Query: 61 WVLSNLCR 68
LSNL
Sbjct: 113 GALSNLAS 120
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Approx. 40
amino acid repeat. Tandem repeats form super-helix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. CAUTION: This family does
not contain all known armadillo repeats.
Length = 41
Score = 47.4 bits (114), Expect = 1e-07
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 154 DDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA 194
+ Q ++ A+ L+ L+ SP E +++EA WA+SN+ A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 44.8 bits (107), Expect = 9e-07
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 196 NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
+ + QAVI+A P L+++L + + ++EAAWA++N +
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 42.8 bits (102), Expect = 5e-06
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 112 PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT 152
E QAVI+AG LV+LL +V A A+ N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 39.4 bits (93), Expect = 8e-05
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 29/67 (43%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
+ VI+AGAVP +QLL SP E+ + + W
Sbjct: 4 NKQAVIEAGAVPPLVQLLSSPDEE-----------------------------VQEEAAW 34
Query: 62 VLSNLCR 68
LSNL
Sbjct: 35 ALSNLAA 41
Score = 37.4 bits (88), Expect = 4e-04
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 239 TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277
+P+ + +I+ G + P +LL+ D ++ + A L N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
Score = 37.0 bits (87), Expect = 5e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSD 110
A A+ L +LL D +V +A WA+S L+
Sbjct: 11 AGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats. Approx. 40
amino acid repeat. Tandem repeats form superhelix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. Involved in transducing
the Wingless/Wnt signal. In plakoglobin arm repeats bind
alpha-catenin and N-cadherin.
Length = 41
Score = 45.1 bits (108), Expect = 8e-07
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 154 DDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA 194
DD+ Q +++ L L+ L++S E + KEA WA+SN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 43.6 bits (104), Expect = 3e-06
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 196 NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
+ + QAV+DA P+L+E+L+ + + KEAAWA++N +S
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 42.0 bits (100), Expect = 9e-06
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 112 PNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
+E QAV+DAG LVELL + +VV A A+ N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Score = 36.6 bits (86), Expect = 7e-04
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 239 TPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277
+ + ++ G + ELL D ++++ A L N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
Score = 32.0 bits (74), Expect = 0.026
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 29/67 (43%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
+ V+DAG +P ++LL S E+ +V+ + W
Sbjct: 4 NKQAVVDAGGLPALVELLKSEDEE-----------------------------VVKEAAW 34
Query: 62 VLSNLCR 68
LSNL
Sbjct: 35 ALSNLSS 41
Score = 30.1 bits (69), Expect = 0.16
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 82 ALACLSRLLFHADPDVLADACWAISYLSD 110
L L LL D +V+ +A WA+S LS
Sbjct: 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 35.9 bits (83), Expect = 0.002
Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 179 ESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITN 233
+R+ A A+ + G + ++ + + P+L+ +L+ + + R+ AAWA+
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVP-ELLPALLPLLKDDDDEVREAAAWALGR 54
Score = 35.1 bits (81), Expect = 0.003
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 137 HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNI 192
+V AA A+G + G + + + L LL L++ + +R+ A WA+ I
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVP-ELLPALLPLLKDDDDEVREAAAWALGRI 55
Score = 29.7 bits (67), Expect = 0.28
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 57 RNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108
+ L L G P V L L LL D +V A WA+ +
Sbjct: 5 EAAALALGALA-GGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 36.2 bits (84), Expect = 0.003
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145
L LL DP+V A A A+ L D + A L+ELL +V AA
Sbjct: 5 LEALLSDPDPEVRAAAARALGELGD------PEALPA-----LLELLKDPDPEVRRAAAE 53
Query: 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186
A+G + GD + AL LL L+Q +++ + A
Sbjct: 54 ALGKL--GDPE---------ALPALLELLQDDDDAVVRAAA 83
Score = 35.0 bits (81), Expect = 0.008
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 23/102 (22%)
Query: 128 LVELLMHDQH-KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186
L+E L+ D +V +AA RA+G + GD + AL LL L++ P +R+ A
Sbjct: 4 LLEALLSDPDPEVRAAAARALGEL--GDPE---------ALPALLELLKDPDPEVRRAAA 52
Query: 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAA 228
A+ + G+ + + A L+E+LQ + + AA
Sbjct: 53 EALGKL--GDPEALPA---------LLELLQDDDDAVVRAAA 83
Score = 30.4 bits (69), Expect = 0.29
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 82 ALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVV- 140
AL L LL DP+V A A+ L D + A L+ELL D VV
Sbjct: 32 ALPALLELLKDPDPEVRRAAAEALGKLGD------PEALPA-----LLELLQDDDDAVVR 80
Query: 141 SAALRAVG 148
+AA A+
Sbjct: 81 AAAASALA 88
Score = 30.0 bits (68), Expect = 0.40
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 173 LIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAIT 232
L+ P +R A A+ + D P+L+E+L+ + + R+ AA A+
Sbjct: 8 LLSDPDPEVRAAAARALGEL-----------GDPEALPALLELLKDPDPEVRRAAAEALG 56
Query: 233 NATSGGTPDQIRYLIQ 248
G P+ + L++
Sbjct: 57 KL---GDPEALPALLE 69
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 38.5 bits (90), Expect = 0.005
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP 177
A ++AG LV+LL + A + ++ + +L+ A+ LL L+
Sbjct: 184 ATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG 243
Query: 178 KE-SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIE--ILQKAEFKTRKEAAWAITNA 234
E S+R EA A+ +++ +++ QA+ DA P+LI + EF + A NA
Sbjct: 244 NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENA 303
Query: 235 T------SGGTPDQIRYLIQ 248
GG I YL +
Sbjct: 304 MGALANICGGMSALILYLGE 323
Score = 28.9 bits (65), Expect = 6.5
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 15/146 (10%)
Query: 162 LNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID--ANIFPSLIEILQKA 219
L A+ L+ ++ + ES + A A+ +++GN + A+ D N +L +IL
Sbjct: 1270 LARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSD 1329
Query: 220 EFKTRKEAAWAI-----TNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGL 274
KE A + TN TP CIEP LL + + + L
Sbjct: 1330 SSLELKEDAAELCRVLFTNTRIRSTP------AAARCIEPLISLLVSESSTAQEAGVCAL 1383
Query: 275 ENIL--KLGEEEAKQTGSVNPYVVLI 298
+ +L + E G+V P V L+
Sbjct: 1384 DRLLDDEQLAELVAAHGAVVPLVGLV 1409
>gnl|CDD|219645 pfam07923, N1221, N1221-like protein. The sequences featured in
this family are similar to a hypothetical protein
product of ORF N1221 in the CPT1-SPC98 intergenic region
of the yeast genome. This encodes an acidic polypeptide
with several possible transmembrane regions.
Length = 293
Score = 32.7 bits (75), Expect = 0.27
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 28/113 (24%)
Query: 156 QQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQA-------VIDANI 208
+ T + AL LL++ Q WA TA +Q+ + +++
Sbjct: 70 EVTDLSRRLKALEALLYIAQ---------GTWA---ETASKSEQLHSIRRNVLLLVECGG 117
Query: 209 FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQ--------IRYLIQQGCIE 253
F L+E+L F+ A TN + D+ I YLI + C E
Sbjct: 118 FEPLVELLNM-FFEHAIACDDAATNLPAYSAADETELFLLLTILYLIVEVCRE 169
>gnl|CDD|146914 pfam04510, DUF577, Family of unknown function (DUF577). Family of
Arabidopsis thaliana proteins. Many of these members
contain a repeated region.
Length = 174
Score = 30.0 bits (68), Expect = 1.5
Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 22/60 (36%)
Query: 11 AVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDK--PK--NRLSM---VRNSVWVL 63
A VFI L M L + P +D P+ L V WVL
Sbjct: 62 AFHVFIDL---------------PMPLYEEFIIPFLDNLLPEISKVLLPPEEVDVEDWVL 106
>gnl|CDD|152134 pfam11698, V-ATPase_H_C, V-ATPase subunit H. The yeast
Saccharomyces cerevisiae vacuolar H+-ATPase (V-ATPase)
is a multisubunit complex responsible for acidifying
organelles. It functions as an ATP dependent proton pump
that transports protons across a lipid bilayer. This
domain corresponds to the C terminal domain of the H
subunit of V-ATPase. The N-terminal domain is required
for the activation of the complex whereas the C-terminal
domain is required for coupling ATP hydrolysis to proton
translocation.
Length = 119
Score = 29.1 bits (66), Expect = 1.6
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 94 DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
DP LA AC I E + GV R++EL+ H+ +V AL AV ++
Sbjct: 57 DPLTLAVACNDIGEFVRLYPEGKNILEKLGVKARVMELMSHEDPEVRYEALLAVQKLM 114
>gnl|CDD|236973 PRK11767, PRK11767, SpoVR family protein; Provisional.
Length = 498
Score = 30.2 bits (69), Expect = 2.2
Identities = 7/18 (38%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 307 IEFLQSHENIEIYQKAFD 324
+EFL SH N+ ++Q ++
Sbjct: 301 LEFLHSHTNV-VFQPPYN 317
>gnl|CDD|147785 pfam05822, UMPH-1, Pyrimidine 5'-nucleotidase (UMPH-1). This
family consists of several eukaryotic pyrimidine
5'-nucleotidase proteins. P5'N-1, also known as uridine
monophosphate hydrolase-1 (UMPH-1), is a member of a
large functional group of enzymes, characterized by the
ability to dephosphorylate nucleic acids. P5'N-1
catalyzes the dephosphorylation of pyrimidine nucleoside
monophosphates to the corresponding nucleosides.
Deficiencies in this proteins function can lead to
several different disorders in humans.
Length = 246
Score = 28.8 bits (65), Expect = 3.8
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 306 KIEFLQSH--ENIEIYQKAFDII 326
KI FL EN++ Y ++DI+
Sbjct: 206 KIGFLNDKVEENLDKYMDSYDIV 228
>gnl|CDD|224460 COG1543, COG1543, Uncharacterized conserved protein [Function
unknown].
Length = 504
Score = 29.3 bits (66), Expect = 3.9
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 241 DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGS---------V 291
+ +++LI E+L D + L LE ++L E+E K+
Sbjct: 50 EGVKFLITLSMTPVLMEMLA--DPYLQDRYLRYLEWKIELSEKEEKRYADQSLRELAEFY 107
Query: 292 NPY---VVLIEECYG---LDKIEFLQSHENIEI 318
P E Y L+ + LQ IEI
Sbjct: 108 IPEFLNARGYWEQYDGNLLEAFKELQRSGGIEI 140
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 29.0 bits (65), Expect = 3.9
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 17/68 (25%)
Query: 265 KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH-ENIEIYQKAF 323
K++ + +N EN+LK GE++AK+ G N IEFLQ + E + +F
Sbjct: 74 KVVGLDIN--ENMLKEGEKKAKEEGKYN--------------IEFLQGNAEELPFEDDSF 117
Query: 324 DIIEHYFG 331
DI+ FG
Sbjct: 118 DIVTISFG 125
>gnl|CDD|131422 TIGR02369, trimeth_pyl, trimethylamine:corrinoid methyltransferase.
This model represents a distinct subfamily of
pfam06253. All members here are trimethylamine:corrinoid
methyltransferases that contain a critical pyrrolysine
residue incorporated during translation via a special
tRNA for a TAG (amber) codon. Known members so far are
from the genus Methanosarcina. It is one of a suite of
three non-homologous enzymes with a critical UAG-encoded
pyrrolysine residue in these species (along with
dimethylamine methyltransferase and monomethylamine
methyltransferase). It demethylates trimethylamine,
leaving dimethylamine, and methylates the prosthetic
group of its small cognate corrinoid protein, MttC. The
methyl group is then transferred by
methylcorrinoid:coenzyme M methyltransferase to coenzyme
M. Note that the pyrrolysine residue is variously
translated as K or X, or as a stop codon that truncates
the sequence.
Length = 489
Score = 29.3 bits (65), Expect = 4.3
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 314 ENIEIYQKAFDIIEHYFGSEEEDTRVAP 341
EN+E Y+ DI++ Y+G +EE+ R P
Sbjct: 186 ENVEYYR---DIVKAYYGGDEEEARKKP 210
>gnl|CDD|131323 TIGR02270, TIGR02270, conserved hypothetical protein. Members are
found in Myxococcus xanthus (six members), Geobacter
sulfurreducens, and Pseudomonas aeruginosa; a short
protein homologous to the N-terminal region is found in
Mesorhizobium loti. All sequence are from
Proteobacteria. The function is unknown [Hypothetical
proteins, Conserved].
Length = 410
Score = 29.1 bits (65), Expect = 4.3
Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 36/152 (23%)
Query: 127 RLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186
L L H+ V +AALRA+G + + T L ++ +R A
Sbjct: 151 ALEAALTHEDALVRAAALRALGELPRRLSEST-----------LRLYLRDSDPEVRFAAL 199
Query: 187 WAVSNITAGN----------------RQQIQAVIDANIFPS----LIEILQKAEFKTRKE 226
A + RQ++ ++ P L E+LQ A TR+E
Sbjct: 200 EAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRRE 257
Query: 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCEL 258
A A G + + ++ P+ L
Sbjct: 258 ALRA-VGLV--GDVEAAPWCLEAMREPPWARL 286
>gnl|CDD|233811 TIGR02289, M3_not_pepF, oligoendopeptidase, M3 family. This family
consists of probable oligoendopeptidases in the M3
family, related to lactococcal PepF and group B
streptococcal PepB (TIGR00181) but in a distinct clade
with considerable sequence differences. The likely
substrate is small peptides and not whole proteins, as
with PepF, but members are not characterized and the
activity profile may differ. Several bacteria have both
a member of this family and a member of the PepF family.
Length = 549
Score = 29.0 bits (65), Expect = 5.2
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 173 LIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEI 215
+Q P S RK+A A A +++ I+ L+++
Sbjct: 152 FLQDPNRSTRKKAWEARYEFFAEVEEELD-----RIYDELVKV 189
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 25.6 bits (57), Expect = 5.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 169 CLLHLIQSPKESIRKEACWAVSNIT 193
LL L+ P +R+ A A+ +
Sbjct: 4 LLLELLNDPDPEVREAAAEALGALA 28
>gnl|CDD|223179 COG0101, TruA, Pseudouridylate synthase [Translation, ribosomal
structure and biogenesis].
Length = 266
Score = 28.4 bits (64), Expect = 6.5
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 53 LSMVRNSVWVLSNLCRGKTPPPDFAKV 79
MVRN V L + RGK P ++
Sbjct: 193 WHMVRNIVGALLLVGRGKRPVEWIKEL 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0877 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,340,946
Number of extensions: 1882263
Number of successful extensions: 1706
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1684
Number of HSP's successfully gapped: 57
Length of query: 379
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 280
Effective length of database: 6,546,556
Effective search space: 1833035680
Effective search space used: 1833035680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.6 bits)