RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy664
(379 letters)
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 401 bits (1032), Expect = e-138
Identities = 249/352 (70%), Positives = 289/352 (82%), Gaps = 15/352 (4%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLID- 47
+QTR+VI AGAVP+FI+LL S ED LD NIL PL+
Sbjct: 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157
Query: 48 -KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAIS 106
+NRL+M RN+VW LSNLCRGK+PPP+FAKV+P L LS LLF +D DVLADACWA+S
Sbjct: 158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALS 217
Query: 107 YLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSA 166
YLSDGPN+KIQAVIDAGVCRRLVELLMH+ +KVVS ALRAVGNIVTGDD QTQVILNCSA
Sbjct: 218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA 277
Query: 167 LMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE 226
L LLHL+ SPKESI+KEACW +SNITAGNR QIQ VIDANIFP+LI ILQ AEF+TRKE
Sbjct: 278 LQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337
Query: 227 AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK 286
AAWAITNATSGG+ +QI+YL++ GCI+P C+LLT++D+KI+QVALNGLENIL+LGE+EAK
Sbjct: 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397
Query: 287 QTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEEDT 337
+ G +NPY LIEE YGLDKIEFLQSHEN EIYQKAFD+IEHYFG+E+ED+
Sbjct: 398 RNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
Score = 136 bits (345), Expect = 2e-36
Identities = 61/297 (20%), Positives = 109/297 (36%), Gaps = 30/297 (10%)
Query: 4 RMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVL 63
++ G V F++ L + S WVL
Sbjct: 58 EVISTPGVVARFVEFLKRKENCTLQ----------------------------FESAWVL 89
Query: 64 SNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAG 123
+N+ G + A A+ LL DV A WA+ ++ V+D
Sbjct: 90 TNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCN 149
Query: 124 VCRRLVELLM-HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIR 182
+ L++L ++ + A+ A+ N+ G + L L L+ +
Sbjct: 150 ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVL 209
Query: 183 KEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQ 242
+ACWA+S ++ G +IQAVIDA + L+E+L ++K A A+ N + G Q
Sbjct: 210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQ 268
Query: 243 IRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIE 299
+ ++ ++ LL+ I + A + NI + + N + LI
Sbjct: 269 TQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALIS 325
Score = 133 bits (337), Expect = 2e-35
Identities = 61/277 (22%), Positives = 113/277 (40%), Gaps = 15/277 (5%)
Query: 54 SMVRNSVWVLSNLCRGKTPPPDFAKVA--PALACLSRLL-FHADPDVLADACWAISYLSD 110
++ L + PP ++ +A L + + ++ W ++ ++
Sbjct: 35 EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94
Query: 111 GPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCL 170
G + + + VI AG +ELL + V A+ A+GNI +L+C+ L L
Sbjct: 95 GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154
Query: 171 LHLIQS-PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAW 229
L L + ++ + A WA+SN+ G + + L +L ++ +A W
Sbjct: 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214
Query: 230 AITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTG 289
A++ + G D+I+ +I G ELL D K++ AL + NI+ G++ Q
Sbjct: 215 ALSYLSD-GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQ-- 270
Query: 290 SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDII 326
+I C L + L S I ++A I
Sbjct: 271 -------VILNCSALQSLLHLLSSPKESIKKEACWTI 300
Score = 121 bits (305), Expect = 6e-31
Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 15/267 (5%)
Query: 77 AKVAPALACLSRLLFHADPDVLADACWAISYL-SDGPNEKIQAVI-DAGVCRRLVELLMH 134
A + + ++F P+ A L S PN I VI GV R VE L
Sbjct: 16 APGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR 75
Query: 135 DQHKVV-SAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193
++ + + + NI +G+ QT++++ A+ + L+ S E ++++A WA+ NI
Sbjct: 76 KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA 135
Query: 194 AGNRQQIQAVIDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCI 252
+ V+D NI P L+++ K + A WA++N G +P + C+
Sbjct: 136 GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP-PPEFAKVSPCL 194
Query: 253 EPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQS 312
LL + D ++ A L + G + Q + + ++ L
Sbjct: 195 NVLSWLLFVSDTDVLADACWALSYLSD-GPNDKIQ---------AVIDAGVCRRLVELLM 244
Query: 313 HENIEIYQKAFDIIEHYFGSEEEDTRV 339
H + ++ A + + ++ T+V
Sbjct: 245 HNDYKVVSPALRAVGNIVTGDDIQTQV 271
Score = 64.9 bits (158), Expect = 1e-11
Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 15/174 (8%)
Query: 153 GDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ-QIQAVI-DANIFP 210
++ ++ +I S + A + + I VI +
Sbjct: 8 AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 211 SLIEILQKAEF-KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQV 269
+E L++ E + E+AW +TN S G Q R +IQ G + F ELL+ + +
Sbjct: 68 RFVEFLKRKENCTLQFESAWVLTNIAS-GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQ 126
Query: 270 ALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDK-IEFLQSHENIEIYQKA 322
A+ L NI + +C L ++ + + + A
Sbjct: 127 AVWALGNIAGDSTM----------CRDYVLDCNILPPLLQLFSKQNRLTMTRNA 170
Score = 34.1 bits (78), Expect = 0.067
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 191 NITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQ- 249
++ I +IE++ + + A S I +I
Sbjct: 4 GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63
Query: 250 GCIEPFCELLTLLDAKIIQV-ALNGLENILKLGEEEAK---QTGSVNPYVVLIE 299
G + F E L + +Q + L NI + + Q G+V ++ L+
Sbjct: 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS 117
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 370 bits (952), Expect = e-125
Identities = 185/374 (49%), Positives = 251/374 (67%), Gaps = 27/374 (7%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS-------------LDNNILYPLIDK 48
QT++V+DA AVP+FIQLL + + V ++ + L N + P++
Sbjct: 165 QTKVVVDADAVPLFIQLLYTGSVE-VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223
Query: 49 PK-NRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
N+ S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISY
Sbjct: 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 283
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
LSDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE+KT+KEA
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403
Query: 228 AWAITNATSGGT--PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENILK+GE +
Sbjct: 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 463
Query: 286 KQTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE--DTRVAPC 342
+ G ++N IE+ G++KI Q +EN +IY+KA+ IIE YFG EE+ D +AP
Sbjct: 464 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAP- 522
Query: 343 VTHDASGAQEFTFA 356
TF
Sbjct: 523 ------QNAGNTFG 530
Score = 133 bits (336), Expect = 8e-35
Identities = 64/300 (21%), Positives = 113/300 (37%), Gaps = 32/300 (10%)
Query: 5 MVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLS 64
+VI AG VP ++ + + + + W L+
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQ----------------------------LEAAWALT 156
Query: 65 NLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGV 124
N+ G + A A+ +LL+ +V A WA+ ++ + V+
Sbjct: 157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 216
Query: 125 CRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKE 184
++ L ++ ++ A + N+ G Q + AL L LI S +
Sbjct: 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 276
Query: 185 ACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIR 244
ACWA+S ++ G ++ IQAVID I L+E+L + A A+ N + G Q +
Sbjct: 277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQ 335
Query: 245 YLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK---QTGSVNPYVVLIEEC 301
+I G + LL+ I + A + NI E+ + + P V L+E
Sbjct: 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 367 bits (943), Expect = e-124
Identities = 173/397 (43%), Positives = 229/397 (57%), Gaps = 40/397 (10%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLI--- 46
QT+ V+D GA+P FI LL SPH + + + + + PL+
Sbjct: 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
Query: 47 ---DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACW 103
D +RN W LSNLCR K P P V L L RLL H DP+VLAD+CW
Sbjct: 195 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 254
Query: 104 AISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILN 163
AISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ +++
Sbjct: 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 314
Query: 164 CSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223
AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+FKT
Sbjct: 315 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374
Query: 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283
+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI + E
Sbjct: 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE- 433
Query: 284 EAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE-DTRVAPC 342
+ G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF EEE D V P
Sbjct: 434 ---KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP- 489
Query: 343 VTHDASGAQEFTFAGATQGGACDSTTMLAGGGGGFNF 379
+ ++ F F G G FNF
Sbjct: 490 ----ETTSEGFAFQVQD------------GAPGTFNF 510
Score = 127 bits (319), Expect = 1e-32
Identities = 61/330 (18%), Positives = 113/330 (34%), Gaps = 44/330 (13%)
Query: 5 MVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLS 64
+I AG +P F+ L + S W L+
Sbjct: 95 NIIRAGLIPKFVSFLGKTDCSPIQ----------------------------FESAWALT 126
Query: 65 NLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGV 124
N+ G + A+ LL + A WA+ ++ + VI G
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186
Query: 125 CRRLVELLMHDQHKVVSAALRA-----VGNIVTGDDQQTQVILNCSALMCLLHLIQSPKE 179
L+ LL ++ + N+ + + L L+ L+
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 180 SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ ++CWA+S +T G ++I+ V+ + P L+++L E A AI N + GT
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT-GT 305
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIE 299
+Q + +I G + F LLT I + A + NI T + +
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI----------TAGRQDQIQQVV 355
Query: 300 ECYGLDKIEFLQSHENIEIYQKAFDIIEHY 329
+ + + S + + ++A I +Y
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Score = 120 bits (303), Expect = 2e-30
Identities = 48/297 (16%), Positives = 100/297 (33%), Gaps = 18/297 (6%)
Query: 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAI-SYL 108
R M + + + V ++ + + + + + A A L
Sbjct: 26 FERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLL 85
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQH-KVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
S I +I AG+ + V L + + A+ NI +G +QT+ +++ A+
Sbjct: 86 SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 145
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE- 226
+ L+ SP I ++A WA+ NI VI L+ +L + T
Sbjct: 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205
Query: 227 ----AAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGE 282
W ++N P + + LL D +++ + + +
Sbjct: 206 YLRNLTWTLSNLCRNKNP-APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL----- 259
Query: 283 EEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEEDTRV 339
T N + ++ + + ++ L + I A I + +E T+
Sbjct: 260 -----TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 264 bits (676), Expect = 1e-87
Identities = 90/249 (36%), Positives = 139/249 (55%), Gaps = 11/249 (4%)
Query: 82 ALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVS 141
L +++ L D A S + NE+IQAVIDAG LV+LL +++
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 142 AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQ 201
AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I +EA WA+SNI +G +QIQ
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 202 AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL 261
AVIDA P+L+++L + +EA WA++N SGG +QI+ +I G + +LL+
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS 191
Query: 262 LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQK 321
+ +I+Q AL L NI G E+ ++E L+K+E LQSHEN +I ++
Sbjct: 192 PNEQILQEALWALSNIASGGNEQK----------QAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 322 AFDIIEHYF 330
A + +E
Sbjct: 242 AQEALEKLQ 250
Score = 139 bits (352), Expect = 3e-39
Identities = 80/235 (34%), Positives = 119/235 (50%), Gaps = 35/235 (14%)
Query: 5 MVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLS 64
VIDAGA+P +QLL SP+E + ++W LS
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQE-----------------------------ALWALS 79
Query: 65 NLCRGKTPPPDFAKV---APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121
N+ G + + A AL L +LL + +L +A WA+S ++ G NE+IQAVID
Sbjct: 80 NIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI 181
AG LV+LL +++ AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 182 RKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
+EA WA+SNI +G +Q QAV +A L ++ K +KEA A+ S
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Score = 137 bits (346), Expect = 2e-38
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 29/193 (15%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
Q + VIDAGA+P +QLL SP+E +++ ++W
Sbjct: 88 QIQAVIDAGALPALVQLLSSPNEQ-----------------------------ILQEALW 118
Query: 62 VLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121
LSN+ G A AL L +LL + +L +A WA+S ++ G NE+IQAVID
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178
Query: 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI 181
AG LV+LL +++ AL A+ NI +G ++Q Q + AL L L E I
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Query: 182 RKEACWAVSNITA 194
+KEA A+ + +
Sbjct: 239 QKEAQEALEKLQS 251
Score = 84.3 bits (209), Expect = 7e-19
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218
+ S L + + S + A S I + +QIQAVIDA P+L+++L
Sbjct: 6 HHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS 65
Query: 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+ +EA WA++N S G +QI+ +I G + +LL+ + +I+Q AL L NI
Sbjct: 66 PNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 279 KLGEE 283
G E
Sbjct: 125 SGGNE 129
Score = 46.1 bits (110), Expect = 6e-06
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 197 RQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFC 256
R + P + + L + + + A + S G +QI+ +I G +
Sbjct: 2 RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALV 60
Query: 257 ELLTLLDAKIIQVALNGLENILKLGEEEAKQT 288
+LL+ + +I+Q AL L NI G E Q
Sbjct: 61 QLLSSPNEQILQEALWALSNIA-SGGNEQIQA 91
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 244 bits (625), Expect = 2e-80
Identities = 73/198 (36%), Positives = 114/198 (57%), Gaps = 1/198 (0%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
L + + L D L A +S ++ G NE+IQAVIDAG LV+LL ++
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+ AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I +EA WA+SNI +G +Q
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259
IQAVIDA P+L+++L + +EA WA++N SGG +Q + + + G +E +L
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQ 189
Query: 260 TLLDAKIIQVALNGLENI 277
+ + KI + A LE +
Sbjct: 190 SHENEKIQKEAQEALEKL 207
Score = 145 bits (368), Expect = 5e-42
Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 29/231 (12%)
Query: 6 VIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLSN 65
+P +Q L SP + ++ ++++ LS
Sbjct: 8 HHHGSELPQMVQQLNSPDQQEL-----------------------------QSALRKLSQ 38
Query: 66 LCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVC 125
+ G A AL L +LL + +L +A WA+S ++ G NE+IQAVIDAG
Sbjct: 39 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 126 RRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEA 185
LV+LL +++ AL A+ NI +G ++Q Q +++ AL L+ L+ SP E I +EA
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
Query: 186 CWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
WA+SNI +G +Q QAV +A L ++ K +KEA A+ S
Sbjct: 159 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 171 bits (434), Expect = 2e-47
Identities = 55/358 (15%), Positives = 116/358 (32%), Gaps = 35/358 (9%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLID-- 47
Q + A+P +LL + V S + ++ ++
Sbjct: 142 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 201
Query: 48 KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
+ N + R + L NL + K + + L +L VL A +
Sbjct: 202 QNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLHN 260
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
L AV AG +++V LL K ++ + + G+ + +IL
Sbjct: 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 320
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L++++++ V + + A+++A +L L + +
Sbjct: 321 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 380
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE---E 284
W + N + T + +G + +LL D ++ A L N+ +
Sbjct: 381 LWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 436
Query: 285 AKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEH--YFGSEEEDTRVA 340
Q G + V + L++ + +I + A + H + E + A
Sbjct: 437 VCQVGGIEALVRTV-----------LRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483
Score = 159 bits (404), Expect = 2e-43
Identities = 54/377 (14%), Positives = 118/377 (31%), Gaps = 56/377 (14%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSL----DNNI-----------LYPLI 46
+++ +G + ++ + +++ + + + +N L +
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369
Query: 47 DKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAIS 106
P R +V+N +W L NL + L L +LL D +V+ A +S
Sbjct: 370 TDPSQR--LVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424
Query: 107 YLSDGPNEKIQAVIDAGVCRRLVELLM--HDQHKVVSAALRAVGNIVTGDDQ---QTQVI 161
L+ + V G LV ++ D+ + A+ A+ ++ + +
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484
Query: 162 LNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEF 221
L ++ L+ P +A + A + + P L+++L +A
Sbjct: 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 544
Query: 222 KTRKEAAWAITNATSGG--------------------TPDQIRYLIQQGCIEPFCELLTL 261
T++ + T + I F +LL
Sbjct: 545 DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS 604
Query: 262 LDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQK 321
I +VA L + ++EA + IE + L N +
Sbjct: 605 PIENIQRVAAGVLCEL--AQDKEAAE---------AIEAEGATAPLTELLHSRNEGVATY 653
Query: 322 AFDIIEHYFGSEEEDTR 338
A ++ + +D +
Sbjct: 654 AAAVLFRMSEDKPQDYK 670
Score = 140 bits (353), Expect = 1e-36
Identities = 52/393 (13%), Positives = 117/393 (29%), Gaps = 45/393 (11%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTH---------PSVETMSLDNNILYPLIDKPKNR 52
+++AG + L P + V + + +L L+ +
Sbjct: 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD 411
Query: 53 -LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA--DPDVLADACWAISYLS 109
+++V + +LSNL + L R + A D+ A A+ +L+
Sbjct: 412 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471
Query: 110 DGPNEK---IQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSA 166
+ AV +V+LL H + A + + + A
Sbjct: 472 SRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA 531
Query: 167 LMCLLHLIQSPKESIRKEACWAVSN---------------------ITAGNRQQIQAVID 205
+ L+ L+ + ++ + I A + +
Sbjct: 532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG 591
Query: 206 ANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAK 265
N P +++L ++ AA + + + +G P ELL +
Sbjct: 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEG 649
Query: 266 IIQVALNGLENILKLGEEEAKQTGSVNPYVVL-----IEECYGLDKIEFLQSHENIEIYQ 320
+ A L + + ++ K+ SV L + D + + Y+
Sbjct: 650 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYR 709
Query: 321 KAFDIIEHYFGS--EEEDTRVAPCVTHDASGAQ 351
+ + ++ + P + H+ +G
Sbjct: 710 QDDPSYRSFHSGGYGQDAMGMDPMMEHEMAGHH 742
Score = 96.3 bits (239), Expect = 8e-22
Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 11/242 (4%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVR-NS 59
M V +PV ++LL P + +V + L P N + +
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-------LALCPANHAPLREQGA 531
Query: 60 VWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV 119
+ L L D + + + + + +AC ++ +
Sbjct: 532 IPRLVQLLV--RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589
Query: 120 IDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKE 179
V+LL + A + + D + + I A L L+ S E
Sbjct: 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNE 648
Query: 180 SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ A + ++ Q + + + SL +T G
Sbjct: 649 GVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGY 708
Query: 240 PD 241
Sbjct: 709 RQ 710
Score = 93.9 bits (233), Expect = 5e-21
Identities = 27/208 (12%), Positives = 74/208 (35%), Gaps = 6/208 (2%)
Query: 80 APALACLSRLLFHADPDV--LADACWAISYL-SDGPNEKIQAVIDAGVCRRLVELLMHDQ 136
++ +V LA+ + + + N + A + L +LL +
Sbjct: 104 EGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDED 163
Query: 137 HKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKE-SIRKEACWAVSNITAG 195
VV+ A V + + + ++ + + ++ +Q+ + + + N+ +
Sbjct: 164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL-SH 222
Query: 196 NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPF 255
+R+ + A+ + P+L+ +L A + N + G ++
Sbjct: 223 HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKM 281
Query: 256 CELLTLLDAKIIQVALNGLENILKLGEE 283
LL + K + + + L+ + +E
Sbjct: 282 VALLNKTNVKFLAITTDCLQILAYGNQE 309
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 160 bits (407), Expect = 1e-44
Identities = 50/324 (15%), Positives = 105/324 (32%), Gaps = 24/324 (7%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLID-- 47
Q + A+P +LL + V S + ++ ++
Sbjct: 9 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68
Query: 48 KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
+ N + R + L NL + K + + L ++L VL A +
Sbjct: 69 QNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
L AV AG +++V LL K ++ + + G+ + +IL
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L++++++ V + + A+++A +L L + +
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
W + N + T + +G + +LL D ++ A L N+ + K
Sbjct: 248 LWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNKM 302
Query: 288 T----GSVNPYVVLIEECYGLDKI 307
G + V + + I
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDI 326
Score = 158 bits (400), Expect = 8e-44
Identities = 52/356 (14%), Positives = 116/356 (32%), Gaps = 38/356 (10%)
Query: 4 RMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSL----DNNI-----------LYPLIDK 48
+++ +G + ++ + +++ + + + +N L +
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238
Query: 49 PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108
P R +V+N +W L NL + L L +LL D +V+ A +S L
Sbjct: 239 PSQR--LVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLM--HDQHKVVSAALRAVGNIVTGDDQ---QTQVILN 163
+ + V G LV ++ D+ + A+ A+ ++ + + +
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353
Query: 164 CSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223
L ++ L+ P +A + A + + P L+++L +A T
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413
Query: 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL--- 280
++ + T I +GC L + +I+ LN + ++L
Sbjct: 414 QRRTSMGGTQQQFVEGVRME--EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 471
Query: 281 GEEEAKQT--------GSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEH 328
E ++ IE + L N + A ++
Sbjct: 472 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527
Score = 123 bits (310), Expect = 3e-31
Identities = 44/308 (14%), Positives = 92/308 (29%), Gaps = 38/308 (12%)
Query: 6 VIDAGAVPVFIQLLLSPHEDQVTH---------PSVETMSLDNNILYPLIDKPKNR-LSM 55
+++AG + L P + V + + +L L+ + +++
Sbjct: 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 282
Query: 56 VRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADP--DVLADACWAISYLSDGPN 113
V + +LSNL + L R + A D+ A A+ +L+
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342
Query: 114 EK---IQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCL 170
E AV +V+LL H + A + + + A+ L
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402
Query: 171 LHLIQSPKESIRKEACWAVSN---------------------ITAGNRQQIQAVIDANIF 209
+ L+ + ++ + I A + + N
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462
Query: 210 PSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQV 269
P +++L ++ AA + + + +G P ELL + +
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATY 520
Query: 270 ALNGLENI 277
A L +
Sbjct: 521 AAAVLFRM 528
Score = 95.2 bits (237), Expect = 1e-21
Identities = 24/172 (13%), Positives = 65/172 (37%), Gaps = 3/172 (1%)
Query: 113 NEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLH 172
N + A + L +LL + VV+ A V + + + ++ + + ++
Sbjct: 7 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66
Query: 173 LIQSPKE-SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAI 231
+Q+ + + + N+ + +R+ + A+ + P+L+++L A +
Sbjct: 67 TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 232 TNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283
N + G ++ LL + K + + + L+ + +E
Sbjct: 126 HNL-LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176
Score = 75.6 bits (186), Expect = 4e-15
Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 42/232 (18%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHE-DQVTHPSVETMS----------------LDNNILYP 44
MV G + ++ +L + + +T P++ + + L
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359
Query: 45 LID--KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADAC 102
++ P + +++ +V ++ NL + A+ L +LL A D
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLLVRAHQDTQRRTS 418
Query: 103 WAISYLSDGPNEKI---------------------QAVIDAGVCRRLVELLMHDQHKVVS 141
+ ++ + V+LL +
Sbjct: 419 MGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 478
Query: 142 AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNIT 193
A + + D + + I A L L+ S E + A + ++
Sbjct: 479 VAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
Score = 68.3 bits (167), Expect = 1e-12
Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 16/178 (8%)
Query: 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205
AV N++ + Q L A+ L L+ + + +A V ++ + +
Sbjct: 1 AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 206 ANIFPSLIEILQKA-EFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDA 264
+ +++ +Q + +T + A + N + + + + + G I ++L
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPVD 115
Query: 265 KIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKA 322
++ A+ L N+L L +E AK + GL K+ L + N++
Sbjct: 116 SVLFYAITTLHNLL-LHQEGAKM---------AVRLAGGLQKMVALLNKTNVKFLAIT 163
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 155 bits (393), Expect = 2e-42
Identities = 53/366 (14%), Positives = 120/366 (32%), Gaps = 38/366 (10%)
Query: 4 RMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSL----DNN-----------ILYPLIDK 48
+++ +G + ++ + +++ + + + +N L +
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235
Query: 49 PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108
P R +V+N +W L NL + L L +LL D +V+ A +S L
Sbjct: 236 PSQR--LVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLM--HDQHKVVSAALRAVGNIVTGDDQ---QTQVILN 163
+ + V G LV ++ D+ + A+ A+ ++ + + +
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350
Query: 164 CSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223
L ++ L+ P +A + A + + P L+++L +A T
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 410
Query: 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL--- 280
++ + T I +GC L + +I+ LN + ++L
Sbjct: 411 QRRTSMGGTQQQFVEGVRME--EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 468
Query: 281 GEEEAKQT--------GSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGS 332
E ++ IE + L N + A ++
Sbjct: 469 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528
Query: 333 EEEDTR 338
+ +D +
Sbjct: 529 KPQDYK 534
Score = 154 bits (391), Expect = 5e-42
Identities = 46/348 (13%), Positives = 114/348 (32%), Gaps = 41/348 (11%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMV----- 56
+ ++ V ++ + + ++ + + T L+ L + L++
Sbjct: 48 RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT-------LHNLSHHREGLLAIFKSGGI 100
Query: 57 ---------------RNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADA 101
++ L NL + ++A L + LL + LA
Sbjct: 101 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160
Query: 102 CWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVI 161
+ L+ G E ++ +G + LV ++ ++ + V +++ I
Sbjct: 161 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 220
Query: 162 LNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEF 221
+ + L + P + + + W + N++ +Q + +L+++L +
Sbjct: 221 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDI 277
Query: 222 KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL--LDAKIIQVALNGLENILK 279
AA ++N T + Q G IE + I + A+ L ++
Sbjct: 278 NVVTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336
Query: 280 LGEEEAKQTGSVNPYVVLIEECYGLDK-IEFLQSHENIEIYQKAFDII 326
+E + YGL ++ L + + + +I
Sbjct: 337 RHQEAEMA-------QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 377
Score = 147 bits (372), Expect = 2e-39
Identities = 47/301 (15%), Positives = 99/301 (32%), Gaps = 20/301 (6%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLID-- 47
Q + A+P +LL + V S + ++ ++
Sbjct: 6 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65
Query: 48 KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISY 107
+ N + R + L NL + K + + L ++L VL A +
Sbjct: 66 QNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHN 124
Query: 108 LSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSAL 167
L AV AG +++V LL K ++ + + G+ + +IL
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 168 MCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
L++++++ V + + A+++A +L L + +
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
W + N + T + +G + +LL D ++ A L N+ + K
Sbjct: 245 LWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNKM 299
Query: 288 T 288
Sbjct: 300 M 300
Score = 100 bits (249), Expect = 4e-23
Identities = 40/319 (12%), Positives = 89/319 (27%), Gaps = 25/319 (7%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVR-NS 59
M V +PV ++LL P + +V + L P N + +
Sbjct: 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-------LALCPANHAPLREQGA 395
Query: 60 VWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV 119
+ L L + + + +++ A+ L+ + + +
Sbjct: 396 IPRLVQLLVRAHQDTQ-RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVI 453
Query: 120 IDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKE 179
V+LL + A + + + + I A L L+ S E
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAPLTELLHSRNE 512
Query: 180 SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGT 239
+ A + ++ Q + + + SL R E A G
Sbjct: 513 GVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL----------FRTEPMAWNETADLGLD 562
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIE 299
+ +P + ++ + E G+ P L +
Sbjct: 563 IGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMME----HEMGGHHPGADYPVDGLPD 618
Query: 300 ECYGLDKIEFLQSHENIEI 318
+ D ++ L ++ ++
Sbjct: 619 LGHAQDLMDGLPPGDSNQL 637
Score = 95.8 bits (238), Expect = 1e-21
Identities = 23/166 (13%), Positives = 63/166 (37%), Gaps = 3/166 (1%)
Query: 113 NEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLH 172
N + A + L +LL + VV+ A V + + + ++ + + ++
Sbjct: 4 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63
Query: 173 LIQSPKE-SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAI 231
+Q+ + + + N+ + +R+ + A+ + P+L+++L A +
Sbjct: 64 TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 232 TNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277
N + G ++ LL + K + + + L+ +
Sbjct: 123 HN-LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 148 bits (376), Expect = 9e-42
Identities = 43/288 (14%), Positives = 83/288 (28%), Gaps = 36/288 (12%)
Query: 3 TRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPL----IDKPKNR------ 52
+ + G + +LL E +++L L N+
Sbjct: 66 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125
Query: 53 ---------------LSMVRNSVWVLSNLCRGKTPPPDFA-KVAPALACLSRLLFHA-DP 95
+ + VL NL + ++ L
Sbjct: 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 185
Query: 96 DVLADACWAISYLS-DGPNEKIQAVIDAGVCRRLVELLMHDQH-------KVVSAALRAV 147
L A+ LS K G LV L + + LR V
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 148 GNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDAN 207
+++ ++ Q++ + L LL ++S +I AC + N++A N + +A+ D
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305
Query: 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQ-IRYLIQQGCIEP 254
L ++ +A A+ N + ++ G P
Sbjct: 306 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
Score = 96.1 bits (239), Expect = 2e-22
Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 31/257 (12%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQH-- 137
P + + + A + LS + A+ + G + + ELL D
Sbjct: 31 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMY 89
Query: 138 ---------KVVSAALRAVGNIVTGDDQQTQVILNCS-ALMCLLHLIQSPKESIRKEACW 187
+ A A+ N+ GD + + + L+ ++S E +++
Sbjct: 90 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 149
Query: 188 AVSNITAGNRQQIQAVI-DANIFPSLIEILQKAEF-KTRKEAAWAITNATSGGTPDQIRY 245
+ N++ + + + +L+E + + T K A+ N ++ T ++
Sbjct: 150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209
Query: 246 LIQQGCIEPFCELLTLL----DAKIIQVALNGLENILKL--GEEEAKQTGSVNPYVVLIE 299
G + LT II+ L N+ L E+ +Q ++
Sbjct: 210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ---------ILR 260
Query: 300 ECYGLDK-IEFLQSHEN 315
E L ++ L+SH
Sbjct: 261 ENNCLQTLLQHLKSHSL 277
Score = 90.7 bits (225), Expect = 1e-20
Identities = 26/213 (12%), Positives = 61/213 (28%), Gaps = 67/213 (31%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
+ + GA+ + L + L+++ +
Sbjct: 206 KADICAVDGALAFLVGTLTYRSQTN-------------------------TLAIIESGGG 240
Query: 62 VLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVID 121
+L N+ S L + Q + +
Sbjct: 241 ILRNV---------------------------------------SSLIATNEDHRQILRE 261
Query: 122 AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESI 181
+ L++ L +VS A + N+ + + + + + A+ L +LI S + I
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321
Query: 182 RKEACWAVSNITAGNRQQIQA---VIDANIFPS 211
+ A+ N+ A + + + + PS
Sbjct: 322 AMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354
Score = 66.0 bits (161), Expect = 3e-12
Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 19/185 (10%)
Query: 133 MHDQHKVVSAALRAVGNIVT-GDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSN 191
M H L + I + + + + + +P E A +
Sbjct: 1 MGHHHHH--HMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 58
Query: 192 ITAGNRQQIQAVIDANIFPSLIEILQKAEF-----------KTRKEAAWAITNATSGGTP 240
+ + + + A+ + ++ E+LQ R+ A A+TN T G
Sbjct: 59 L-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117
Query: 241 DQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK----QTGSVNPYVV 296
++ +GC+ L + QV + L N+ + +K + GSV +
Sbjct: 118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177
Query: 297 LIEEC 301
E
Sbjct: 178 CALEV 182
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 135 bits (340), Expect = 8e-36
Identities = 39/246 (15%), Positives = 72/246 (29%), Gaps = 39/246 (15%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVW 61
+ + G + + L S ED + +
Sbjct: 235 KATLCSMKGCMRALVAQLKSESED-----------------------------LQQVIAS 265
Query: 62 VLSNLCRGKTPPPDFA-KVAPALACLSRLLFHA-DPDVLADACWAISYLS-DGPNEKIQA 118
VL NL + ++ L L A+ LS K
Sbjct: 266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325
Query: 119 VIDAGVCRRLVELLMHDQHKV-------VSAALRAVGNIVTGDDQQTQVILNCSALMCLL 171
G LV L + LR V +++ ++ Q++ + L LL
Sbjct: 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385
Query: 172 HLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAI 231
++S +I AC + N++A N + +A+ D L ++ +A A+
Sbjct: 386 QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445
Query: 232 TNATSG 237
N +
Sbjct: 446 RNLMAN 451
Score = 125 bits (315), Expect = 2e-32
Identities = 41/283 (14%), Positives = 90/283 (31%), Gaps = 30/283 (10%)
Query: 6 VIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLSN 65
+ + G + +LL E +++L R + L+N
Sbjct: 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITL------------------RRYAGMALTN 226
Query: 66 LCRGKTPP-PDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI-DAG 123
L G + + L L D+ + LS + + + + G
Sbjct: 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286
Query: 124 VCRRLVELLMHDQ-HKVVSAALRAVGNI-VTGDDQQTQVILNCSALMCLLHLIQSPKES- 180
+ L+E + + + + L A+ N+ + + + AL L+ + ++
Sbjct: 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346
Query: 181 ---IRKEACWAVSNIT---AGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA 234
I + + N++ A N Q + + N +L++ L+ A + N
Sbjct: 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406
Query: 235 TSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENI 277
++ P L G + L+ I + L N+
Sbjct: 407 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448
Score = 105 bits (262), Expect = 4e-25
Identities = 55/341 (16%), Positives = 119/341 (34%), Gaps = 39/341 (11%)
Query: 2 QTRMVI-DAGAVPVFIQLLLSPHEDQV----THPSVETMSLDNNILYPLIDKPKNRLSMV 56
+ + + +G +P+ IQLL +D V + S E + + L+ +I +
Sbjct: 61 DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGR 120
Query: 57 R--NSVWVLSNLCRGKTPPPDFAKVA-PALACLSRLLFHADPDVLADACWAISYLSDGPN 113
R + +L + ++ + P + + + A + LS
Sbjct: 121 REIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 180
Query: 114 EKIQAVIDAGVCRRLVELLMHDQH-----------KVVSAALRAVGNIVTGDDQQTQ-VI 161
+ A+ + G + + ELL D + A A+ N+ GD +
Sbjct: 181 HR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 239
Query: 162 LNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVI-DANIFPSLIEILQKAE 220
+ L+ ++S E +++ + N++ + + + +L+E + +
Sbjct: 240 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299
Query: 221 -FKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL----DAKIIQVALNGLE 275
T K A+ N ++ T ++ G + LT II+ L
Sbjct: 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359
Query: 276 NILKL--GEEEAKQTGSVNPYVVLIEECYGLDK-IEFLQSH 313
N+ L E+ +Q ++ E L ++ L+SH
Sbjct: 360 NVSSLIATNEDHRQ---------ILRENNCLQTLLQHLKSH 391
Score = 40.3 bits (94), Expect = 8e-04
Identities = 21/168 (12%), Positives = 42/168 (25%), Gaps = 42/168 (25%)
Query: 128 LVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP---------- 177
L+ +L +S L A+ + + L L+ L+
Sbjct: 37 LLSMLGTHDKDDMSRTLLAM----SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92
Query: 178 --KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEF-------------- 221
+ R A A+ NI + + + L +I E
Sbjct: 93 RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQ 152
Query: 222 ----------KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259
A + + + + + G ++ ELL
Sbjct: 153 DKNPMPAPVEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELL 198
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 131 bits (329), Expect = 2e-33
Identities = 44/303 (14%), Positives = 94/303 (31%), Gaps = 20/303 (6%)
Query: 4 RMVIDAGAVPVFIQLLLSPHEDQ-----------VTHPSVETMSLDNNILYPLIDKPKNR 52
++ + G L + + + + + L+
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG 548
Query: 53 LSMVR-NSVWVLSNLCRGKTPPPDFAKVAP--ALACLSRLLFH-ADPDVLADACWAISYL 108
+ ++ L+ + P F+ + L LL ++ A++ L
Sbjct: 549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168
+ Q +I ++ LM D + AA + + N+V +D N +
Sbjct: 609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668
Query: 169 CLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID-ANIFPSLIEILQKAEFKTRKEA 227
L L + E A++ IT+ + + + ++ A+ L ++ +
Sbjct: 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLD---AKIIQVALNGLENILKLGEEE 284
I N + G + + L + +E L L D AK +VA L + E
Sbjct: 729 IVIILNMINAG-EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE 787
Query: 285 AKQ 287
Sbjct: 788 RSD 790
Score = 111 bits (278), Expect = 8e-27
Identities = 49/338 (14%), Positives = 110/338 (32%), Gaps = 36/338 (10%)
Query: 3 TRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNN------ILYPLIDKPKNRLS-- 54
++V G + + + + + E Q ++ + + +D K
Sbjct: 283 NQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSK 342
Query: 55 ---MVRNSVWVLSNLCRGK----TPPPDFAKVAPALACLSRLLF---HADPDVLADACWA 104
+ ++ L L P A LA R D D+ A
Sbjct: 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADG 402
Query: 105 ISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC 164
++YL+ K + + D L++L + + N+ ++Q
Sbjct: 403 LAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM----- 457
Query: 165 SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTR 224
L ++ L + K+ I +E + ++I + + I +L + + ++
Sbjct: 458 --LPEMIELAKFAKQHIPEEHEL---DDVDFINKRITVLANEGITTALCALAKTESHNSQ 512
Query: 225 KEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284
+ A + G + ++Q+G ++ + K + A L I E
Sbjct: 513 ELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570
Query: 285 AKQTGSVNPYVV------LIEECYGLDKIEFLQSHENI 316
+G + V+ L ++C L+ E L + N+
Sbjct: 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608
Score = 79.9 bits (196), Expect = 2e-16
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 1/163 (0%)
Query: 53 LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGP 112
L + R + L NL + F + L+ L D + A++ ++
Sbjct: 637 LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS 696
Query: 113 NEKIQAVID-AGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLL 171
+ + ++ A L L+ + V + + N++ ++ + + + L
Sbjct: 697 VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLS 756
Query: 172 HLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIE 214
L Q P ++ K A + A R +I D P +
Sbjct: 757 GLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFA 799
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 112 bits (281), Expect = 1e-28
Identities = 25/191 (13%), Positives = 58/191 (30%), Gaps = 15/191 (7%)
Query: 10 GAVPVFIQLLLSPHEDQV------------THPSVETMSLDNNILYPLID--KPKNRLSM 55
G + + L + +++ L L L+ ++
Sbjct: 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141
Query: 56 VRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEK 115
+++ +S L R + + L R + + + + + L G E
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201
Query: 116 IQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQ 175
+ G+ ++LV L+ + L A+ ++VT Q + + L L
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL-LRH 260
Query: 176 SPKESIRKEAC 186
+ + E
Sbjct: 261 RCQLLQQHEEY 271
Score = 112 bits (280), Expect = 1e-28
Identities = 46/330 (13%), Positives = 101/330 (30%), Gaps = 50/330 (15%)
Query: 10 GAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLSNLCRG 69
G VP + E + + +S ++ + ++ +L++LC
Sbjct: 12 GLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCEN 70
Query: 70 KTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129
DF +++ + R L + A I S + V+ G R+L+
Sbjct: 71 MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130
Query: 130 ELLMHDQH-KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWA 188
LL D V AL A+ +V + L L+ +Q + ++ ++ +
Sbjct: 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFL 190
Query: 189 VSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ 248
+ N+ G+ P+ L
Sbjct: 191 LQNLLVGH-------------------------------------------PEHKGTLCS 207
Query: 249 QGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTG-SVNPYVVLIEECYGLDKI 307
G ++ L+ + + L L +++ + ++ L+ L +
Sbjct: 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ- 266
Query: 308 EFLQSHENIEIYQKAFDIIEHYFGSEEEDT 337
Q E E + +++ F S +D+
Sbjct: 267 ---QHEEYQEELEFCEKLLQTCFSSPADDS 293
Score = 76.6 bits (188), Expect = 6e-16
Identities = 32/232 (13%), Positives = 85/232 (36%), Gaps = 17/232 (7%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETM-----SLDN-------NILYPLIDK 48
M++ + + + +P + Q ++E + ++DN + ++ L+ +
Sbjct: 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGR 89
Query: 49 -PKNRLSMVR-NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFH-ADPDVLADACWAI 105
+ + +R + ++ + + AL L RLL A V A +AI
Sbjct: 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 149
Query: 106 SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCS 165
S L + + L+ + K+ + + N++ G + + +
Sbjct: 150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209
Query: 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ 217
+ L+ L+++ + A+ ++ Q ++ + + L E+L+
Sbjct: 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELLR 259
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 105 bits (261), Expect = 8e-25
Identities = 47/315 (14%), Positives = 100/315 (31%), Gaps = 53/315 (16%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQ-------------VTHPSVETMSLDNNILYPLID- 47
V +PV + LL P ++ + + + + L+
Sbjct: 82 VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141
Query: 48 -KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA-PALACL---------------SRLL 90
+ + + L NL + + A AL +
Sbjct: 142 LRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201
Query: 91 FHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNI 150
VL + + +S +E + + + C LV+ L+ V
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRE---CDGLVDALIF-----------IVQAE 247
Query: 151 VTGDDQQTQVILNC----SALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA 206
+ D ++++ NC L +H E ++ A +N + + +
Sbjct: 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQP 307
Query: 207 NIFPSLIEILQKAEFKTRKE-AAWAITNATSGG--TPDQIRYLIQQ-GCIEPFCELLTLL 262
+ I +L++++ E +A AI N +G IR ++Q + +LLT
Sbjct: 308 EVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367
Query: 263 DAKIIQVALNGLENI 277
++++ A L N+
Sbjct: 368 HERVVKAASGALRNL 382
Score = 83.5 bits (205), Expect = 1e-17
Identities = 47/261 (18%), Positives = 97/261 (37%), Gaps = 30/261 (11%)
Query: 53 LSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGP 112
R S+ L +L +G PP P L + +L V ++A + +L
Sbjct: 22 AQHERGSLASLDSLRKG--GPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79
Query: 113 NEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQV-ILNCSALMCLL 171
++ V LV LL H + +V A A+ NI G DQ ++ I NC + L+
Sbjct: 80 DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALV 139
Query: 172 HLIQ-SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEA--- 227
L++ + + + + N+++ + +++ V A +L + + +E
Sbjct: 140 RLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNED 197
Query: 228 ---------------AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL------DAKI 266
A + N +S + + + G ++ ++ D+K+
Sbjct: 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL 257
Query: 267 IQVALNGLENILKLGEEEAKQ 287
++ + L N+ E Q
Sbjct: 258 VENCVCLLRNLSYQVHREIPQ 278
Score = 74.2 bits (181), Expect = 1e-14
Identities = 48/310 (15%), Positives = 93/310 (30%), Gaps = 39/310 (12%)
Query: 4 RMVIDAGAVPVFIQLLLSPH--------EDQVTHPSVETMSLDNN--ILYPLIDKPKNRL 53
+M I A+ ++ PH ED L N L + +
Sbjct: 168 KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEAR 227
Query: 54 SMVRNS---VWVLSNLCR--GKTPPPDFAKVAPALACLSRLLFHADPDVLAD------AC 102
+R V L + + D V + L L + ++ A
Sbjct: 228 RKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVS-AALRAVGNIVTGDDQQT--- 158
+ P + + V R + LL + + A+ A+ N+ G
Sbjct: 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI 347
Query: 159 -QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQ 217
+ AL + L+ + E + K A A+ N+ R + +I + P+L++ L
Sbjct: 348 RSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLP 405
Query: 218 KAEFKTRKE--------AAWAITNATSGGTPDQIRYLIQQGCIEPFCELL--TLLDAKII 267
+ + I + + + L + IE + K +
Sbjct: 406 GGQQNSSWNFSEDTVISILNTINEVIA-ENLEAAKKLRETQGIEKLVLINKSGNRSEKEV 464
Query: 268 QVALNGLENI 277
+ A L+ I
Sbjct: 465 RAAALVLQTI 474
Score = 49.2 bits (116), Expect = 1e-06
Identities = 31/252 (12%), Positives = 71/252 (28%), Gaps = 51/252 (20%)
Query: 5 MVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLS 64
+ A+ LL + HE V + +L N L +N+ + ++++ L
Sbjct: 350 ALRQEKALSAIADLLTNEHERVV---KAASGALRN-----LAVDARNKELIGKHAIPNLV 401
Query: 65 NLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGV 124
G + D + I+ + E + + +
Sbjct: 402 KNLPGGQQNSSWNFSE---------------DTVISILNTINEVIAENLEAAKKLRETQG 446
Query: 125 CRRLVELLMHDQH--KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIR 182
+LV + K V AA + I + + +
Sbjct: 447 IEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPL---------------------- 484
Query: 183 KEACWA----VSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGG 238
++ W N+ +R Q D + P + + + R+E + + +
Sbjct: 485 EKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQKSDKKPDREEIQMSNMGSNTKS 544
Query: 239 TPDQIRYLIQQG 250
+ ++G
Sbjct: 545 LDNNYSTPNERG 556
Score = 41.9 bits (97), Expect = 3e-04
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 210 PSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQV 269
P +I +L + AA + + + + I LL ++
Sbjct: 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYR-NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 270 ALNGLENILKLGEEEAKQTG 289
A L+NI +++ K
Sbjct: 110 ACGALKNISFGRDQDNKIAI 129
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 101 bits (253), Expect = 6e-24
Identities = 36/325 (11%), Positives = 96/325 (29%), Gaps = 51/325 (15%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQ------------VTHPSVETMSLDNNILYPLID-- 47
+ V G + + LL SP+++ + + + N + +
Sbjct: 36 AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95
Query: 48 KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLF---------------- 91
+ + + +L NL + +A AL L+ +
Sbjct: 96 RRTGNAEIQKQLTGLLWNLSSTDELKEEL--IADALPVLADRVIIPFSGWCDGNSNMSRE 153
Query: 92 HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
DP+V +A + LS + +G+ L+ + + +
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213
Query: 152 TGDDQQTQVILNCSALMCLL-HLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFP 210
+ ++ L + ++ C++ + N + + P
Sbjct: 214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273
Query: 211 -------------SLIEILQKAEFKTRKEAA-WAITNATSG----GTPDQIRYLIQQGCI 252
+ + ++ K++ EA A+ N T+ + +++ +
Sbjct: 274 KGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGL 333
Query: 253 EPFCELLTLLDAKIIQVALNGLENI 277
LL ++ +++ + L N+
Sbjct: 334 PQIARLLQSGNSDVVRSGASLLSNM 358
Score = 74.1 bits (181), Expect = 1e-14
Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 14/162 (8%)
Query: 84 ACLSRLLFHADPDVLADACWAISYLSDGPNEK-----IQAVIDAGVCRRLVELLMHDQHK 138
L+ + L A+ L+ + ++ LL
Sbjct: 287 TYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSD 346
Query: 139 VVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS------PKESIRKEACWAVSNI 192
VV + + N+ ++ + L+ S E I AC+ V N+
Sbjct: 347 VVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404
Query: 193 TAGNRQQIQAVIDANIFPSLIEILQKAEF-KTRKEAAWAITN 233
A Q + +++ ++I + + + K + A +++
Sbjct: 405 MASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446
Score = 74.1 bits (181), Expect = 1e-14
Identities = 33/236 (13%), Positives = 78/236 (33%), Gaps = 23/236 (9%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
+ + L D A + I + Q V G +LV+LL V
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI-QSPKESIRKEACWAVSNITAGNRQ 198
AA A+ N+V + + + L+ ++ I+K+ + N+++ +
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-- 118
Query: 199 QIQAVIDANIFPSLIEIL----------------QKAEFKTRKEAAWAITN-ATSGGTPD 241
+++ + A+ P L + + + + + A + N +++
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178
Query: 242 QIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVL 297
+R G I+ + A + +EN + + + + + P
Sbjct: 179 TMR--NYSGLIDSLMAYVQNCVAA-SRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 75.4 bits (185), Expect = 7e-16
Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 111 GPNEKIQAVIDAGVCRRLVELLM--HDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168
G N ++ ++ R V +L H +SAA + + + + + ++
Sbjct: 1 GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGIL 55
Query: 169 CLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAE-FKTRKEA 227
LL L++ E +++ C A+ N+ + V + N P L+++L++ +T+K+
Sbjct: 56 KLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQI 115
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259
+ N +S D+++ L+ + E +
Sbjct: 116 TGLLWNLSSN---DKLKNLMITEALLTLTENI 144
Score = 72.7 bits (178), Expect = 5e-15
Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 21/206 (10%)
Query: 92 HADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
H P ++ A I + +E + V +L++LL V A A+ N+V
Sbjct: 21 HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV 80
Query: 152 TGDDQQTQVILNCSALMCLLHLI-QSPKESIRKEACWAVSNITAGNRQQIQAVIDA---- 206
D+ + + + LL ++ Q+ +K+ + N+++ ++ + + +A
Sbjct: 81 FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTL 140
Query: 207 ----------NIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFC 256
+ +F + N +S G + G I+
Sbjct: 141 TENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLV 200
Query: 257 ELLT------LLDAKIIQVALNGLEN 276
+ D K + + L N
Sbjct: 201 HYVRGTIADYQPDDKATENCVCILHN 226
Score = 68.8 bits (168), Expect = 1e-13
Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 20/202 (9%)
Query: 45 LIDKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWA 104
+++ S + + + + C K+ + L +LL + DV C A
Sbjct: 16 MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGA 75
Query: 105 ISYLSDGPNEKIQAVIDAGVCRRLVELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILN 163
+ L N+ V + RL+++L + + N+ + D + +I
Sbjct: 76 LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI-- 133
Query: 164 CSALMCLLHLIQSP----------------KESIRKEACWAVSNITAGNRQQIQAVIDA- 206
AL+ L I P I + N+++ +A+
Sbjct: 134 TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCD 193
Query: 207 NIFPSLIEILQKAEFKTRKEAA 228
+ SL+ ++ + +
Sbjct: 194 GLIDSLVHYVRGTIADYQPDDK 215
Score = 49.9 bits (119), Expect = 3e-07
Identities = 29/199 (14%), Positives = 54/199 (27%), Gaps = 45/199 (22%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQ------------VTHPSVETMSLDNNILYPLID-- 47
+ V + +QLL +ED + + N + L+
Sbjct: 44 ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVL 103
Query: 48 KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA-PALACL-------------SRLLFHA 93
K L + +L NL A L +
Sbjct: 104 KQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLL 163
Query: 94 DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG 153
D D+ + + +S + +A+ C L++ L+H V +
Sbjct: 164 DFDIFYNVTGCLRNMSSAGADGRKAMRR---CDGLIDSLVH-----------YVRGTIAD 209
Query: 154 DDQQTQVILNCSALMCLLH 172
+ NC +C+LH
Sbjct: 210 YQPDDKATENC---VCILH 225
Score = 33.8 bits (77), Expect = 0.070
Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 195 GNRQQIQAVIDANIFPSLIEILQKAEF--KTRKEAAWAITNATSGGTPDQIRYLIQQGCI 252
G+ ++ + + +L+ AA I + + + + Q I
Sbjct: 1 GSNADMEMTL-----ERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGI 54
Query: 253 EPFCELLTLLDAKIIQVALNGLENI 277
+LL + + + + L N+
Sbjct: 55 LKLLQLLKVQNEDVQRAVCGALRNL 79
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 57.1 bits (138), Expect = 2e-09
Identities = 30/229 (13%), Positives = 61/229 (26%), Gaps = 47/229 (20%)
Query: 57 RNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKI 116
++L + K V L + L V A A + +
Sbjct: 72 DIGAFILGQI---KICKKCEDNVFNIL--NNMALNDKSACVRATAIESTAQRCKKNPIYS 126
Query: 117 QAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQS 176
+++ V A A+ I D + + L++L++
Sbjct: 127 PKIVEQ-----SQITAFDKSTNVRRATAFAISVI--NDK---------ATIPLLINLLKD 170
Query: 177 PKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATS 236
P +R A +A++ N +E+LQ + R EA ++
Sbjct: 171 PNGDVRNWAAFAININKYDNSDIRDC---------FVEMLQDKNEEVRIEAIIGLSYR-- 219
Query: 237 GGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEA 285
+ L L + + +LG++
Sbjct: 220 -KDKRVLSVLCD-----------ELKKNTVYDDIIEAAG---ELGDKTL 253
Score = 50.6 bits (121), Expect = 3e-07
Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 24/170 (14%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
A+ + + + + + V L + ++D+
Sbjct: 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKSAC 106
Query: 140 V-SAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQ 198
V + A+ + + + I+ ++R+ +A+S I
Sbjct: 107 VRATAIESTAQRCKKNPIYSPKIV--EQSQITAF---DKSTNVRRATAFAISVIN----- 156
Query: 199 QIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ 248
D P LI +L+ R AA+AI D ++
Sbjct: 157 ------DKATIPLLINLLKDPNGDVRNWAAFAININKY-DNSDIRDCFVE 199
Score = 42.9 bits (101), Expect = 9e-05
Identities = 21/169 (12%), Positives = 38/169 (22%), Gaps = 24/169 (14%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
L RLL + + + Q + +E +
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------QDAVRL-----AIEFCSDKNYIR 70
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+G I + V + L + +R A + R +
Sbjct: 71 RDIGAFILGQIKICKKCEDNVF---NILNNMAL--NDKSACVRATAIEST-----AQRCK 120
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ 248
+ I R+ A+AI+ I LI
Sbjct: 121 KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI---NDKATIPLLIN 166
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 52.4 bits (126), Expect = 3e-08
Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 33/152 (21%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
A+ L + L D V A A+ + D + ++ L++ L + V
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDEDGWV 97
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+A A+G I GD+ A+ L+ ++ +R A +A+ I
Sbjct: 98 RQSAAVALGQI--GDE---------RAVEPLIKALKDEDWFVRIAAAFALGEIG------ 140
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAI 231
D LI+ L+ + R+ AA A+
Sbjct: 141 -----DERAVEPLIKALKDEDGWVRQSAADAL 167
Score = 45.8 bits (109), Expect = 6e-06
Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 36/167 (21%)
Query: 82 ALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVS 141
+ + L V A +A+ + D + ++ L++ L + V
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEP-----LIKALKDEDAWVRR 68
Query: 142 AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQ 201
AA A+G I GD+ A+ L+ ++ +R+ A A+ I G+ + ++
Sbjct: 69 AAADALGQI--GDE---------RAVEPLIKALKDEDGWVRQSAAVALGQI--GDERAVE 115
Query: 202 AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ 248
LI+ L+ ++ R AA+A+ G + LI+
Sbjct: 116 P---------LIKALKDEDWFVRIAAAFALGEI---GDERAVEPLIK 150
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 53.6 bits (128), Expect = 6e-08
Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 6/195 (3%)
Query: 70 KTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129
+T D + AL L + D + + G + L+
Sbjct: 70 QTDRSDSEIIGYALDTL-YNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLL 128
Query: 130 ELLMHDQHKVVSAALRAVGNIVTGDDQQTQ--VILNCSALMCLLHLIQSPKESIRKEACW 187
LL V ++ + +++ Q Q ++++ + L+ L+ +E IR +
Sbjct: 129 SLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188
Query: 188 AVSNITAGNRQQIQAVIDANIFPSLIEILQK---AEFKTRKEAAWAITNATSGGTPDQIR 244
+ +T N + V N F L++I+ + ++ E +
Sbjct: 189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQN 248
Query: 245 YLIQQGCIEPFCELL 259
+ + I+
Sbjct: 249 FFKEGSYIQRMKPWF 263
Score = 34.7 bits (79), Expect = 0.050
Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 28/187 (14%)
Query: 55 MVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADA-----CWAISYL- 108
+V + + +L NL + +F K + + D + A + L
Sbjct: 228 VVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLV 287
Query: 109 -----SDGPNEKI----QAVIDAGVCRRLVELLMHD--QHKVVSAALRAVGNIVTGD--- 154
+ P +A+ G+ ++L +LM +++ + V ++ G
Sbjct: 288 RVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN 347
Query: 155 -----DQQTQVILNCSALMCLLHLIQSPKES--IRKEACWAVSNITAGNRQQIQAVIDAN 207
A++ LL + + ++ +R + N Q+ Q I +
Sbjct: 348 QDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVST 406
Query: 208 IFPSLIE 214
+ PS I+
Sbjct: 407 LLPSTID 413
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 51.2 bits (123), Expect = 8e-08
Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 45/198 (22%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
A+ L + L D V A A+ + D + ++ L++ L + V
Sbjct: 44 ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDEDGWV 92
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+A A+G I GD+ A+ L+ ++ +R A +A+ I
Sbjct: 93 RQSAAVALGQI--GDE---------RAVEPLIKALKDEDWFVRIAAAFALGEIG------ 135
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELL 259
D LI+ L+ + R+ AA A+ G + + L
Sbjct: 136 -----DERAVEPLIKALKDEDGWVRQSAADALGEI---GGERVRAAMEK---------LA 178
Query: 260 TLLDAKIIQVALNGLENI 277
+VA+N LE
Sbjct: 179 ETGTGFARKVAVNYLETH 196
Score = 30.7 bits (70), Expect = 0.58
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 22/90 (24%)
Query: 142 AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQ 201
+ D + + + +Q +R+ A +A+ I
Sbjct: 2 RGSHHHHHH--TDPE---------KVEMYIKNLQDDSYYVRRAAAYALGKIG-------- 42
Query: 202 AVIDANIFPSLIEILQKAEFKTRKEAAWAI 231
D LI+ L+ + R+ AA A+
Sbjct: 43 ---DERAVEPLIKALKDEDAWVRRAAADAL 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 48.1 bits (115), Expect = 3e-07
Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 34/152 (22%)
Query: 80 APALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKV 139
+ L + + V D A+S + D + L+E L ++ ++
Sbjct: 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-------EAFEP-----LLESLSNEDWRI 58
Query: 140 VSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
AA +GN D++ A+ L+ L++ +R A ++ I
Sbjct: 59 RGAAAWIIGNF--QDER---------AVEPLIKLLEDDSGFVRSGAARSLEQIG------ 101
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAI 231
+ ++ ++ + RK A +
Sbjct: 102 -----GERVRAAMEKLAETGTGFARKVAVNYL 128
Score = 40.0 bits (94), Expect = 2e-04
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 26/121 (21%)
Query: 128 LVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACW 187
+ + V A+ + GD+ A LL + + IR A W
Sbjct: 17 RGSHMADENKWVRRDVSTALSRM--GDE----------AFEPLLESLSNEDWRIRGAAAW 64
Query: 188 AVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLI 247
+ N + +AV LI++L+ R AA ++ G +
Sbjct: 65 IIGNF--QDE---RAV------EPLIKLLEDDSGFVRSGAARSLEQI---GGERVRAAME 110
Query: 248 Q 248
+
Sbjct: 111 K 111
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 51.3 bits (122), Expect = 4e-07
Identities = 31/251 (12%), Positives = 76/251 (30%), Gaps = 23/251 (9%)
Query: 55 MVRNSV-WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN 113
+VR+ W LS P + P + L + + ++ V AC A + L +
Sbjct: 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474
Query: 114 EKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHL 173
++ + + LV QHK + A+G + LM L
Sbjct: 475 TELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 533
Query: 174 IQ---SPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT------- 223
++ +S++ + + ++ + ++QK +
Sbjct: 534 KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP-VYQRCVNLVQKTLAQAMLNNAQP 592
Query: 224 ----------RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNG 273
A ++ G + + + + + + + ++ Q +
Sbjct: 593 DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL 652
Query: 274 LENILKLGEEE 284
L ++ K +
Sbjct: 653 LGDLTKACFQH 663
Score = 46.7 bits (110), Expect = 1e-05
Identities = 18/148 (12%), Positives = 44/148 (29%), Gaps = 2/148 (1%)
Query: 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHK 138
+ + L + L V + CW +S + + + L++ ++ +
Sbjct: 398 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKR 457
Query: 139 VVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNI-TAGNR 197
V AA A + + L L L+ + A+ + +
Sbjct: 458 VQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516
Query: 198 QQIQAVIDANIFPSLIEILQKAEFKTRK 225
+ + P LI+ + + +
Sbjct: 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKD 544
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 47.1 bits (111), Expect = 8e-06
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 9/163 (5%)
Query: 79 VAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHK 138
+ P L + + + + A A + DGP++ + ++ L+ +
Sbjct: 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426
Query: 139 VVSAALRAVGNIVT--GDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGN 196
V +G I + Q L CL+ L PK + W + N+
Sbjct: 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPK--VATNCSWTIINLVEQL 484
Query: 197 RQQIQAVIDANIFPSLIEILQK-----AEFKTRKEAAWAITNA 234
+ + I + ++ EF R A A+T
Sbjct: 485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527
Score = 39.8 bits (92), Expect = 0.001
Identities = 29/252 (11%), Positives = 78/252 (30%), Gaps = 20/252 (7%)
Query: 55 MVRNSV-WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN 113
V+ + W + + D + P + + P V + W I L +
Sbjct: 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLA 485
Query: 114 EKIQAVIDAGVCRRLVELLMH-----DQHKVVSAALRAVGNIVTGDDQQTQVILNCSA-- 166
E + I + L+ ++ ++A A+ +V +
Sbjct: 486 EATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTF 545
Query: 167 -LMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDA----------NIFPSLIEI 215
+ L + + + E ++ + + + AVI + +
Sbjct: 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL 605
Query: 216 LQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLE 275
L+K + ++ + +A + ++ + L +D+ + A+ +
Sbjct: 606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIA 664
Query: 276 NILKLGEEEAKQ 287
+I EE+ ++
Sbjct: 665 DISNSLEEDFRR 676
Score = 39.8 bits (92), Expect = 0.001
Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 6/166 (3%)
Query: 59 SVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQA 118
+V ++ G V AL + L+ V W I ++D E I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 119 VIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP- 177
+ + + D KV + + N+V + T + + LI +
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAAN 508
Query: 178 ----KESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKA 219
+ + R A A++ + + +I +++ L +
Sbjct: 509 RIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQT 553
Score = 28.2 bits (62), Expect = 5.0
Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 16/168 (9%)
Query: 170 LLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAW 229
L + S + I A ++ I ++ + +++ + + K A+
Sbjct: 100 ALTALVSIEPRIANAAAQLIAAIA---DIELPHGAWPELMKIMVDNTGAEQPENVKRASL 156
Query: 230 AITNATSGGTPDQIRYLIQQGCIEPFCELLTLL----DAKIIQVALNGLENILKLGEEEA 285
Q + L+ + + ALN L + L +
Sbjct: 157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM 216
Query: 286 KQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSE 333
++ G N + ++ E E+IE+ AF +
Sbjct: 217 EREGERNYLMQVVCE---------ATQAEDIEVQAAAFGCLCKIMSKY 255
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 45.9 bits (107), Expect = 2e-05
Identities = 32/213 (15%), Positives = 75/213 (35%), Gaps = 14/213 (6%)
Query: 79 VAPALACLSRLLFHADPDVLADACWAISYLSDG-PNEKIQAVIDAGVCRRLVELLMH--- 134
V + L + + + + + P + + A VC+++ L
Sbjct: 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA 143
Query: 135 --DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNI 192
+ V AL + ++++ S L CLL + SP+ ++RK A+ ++
Sbjct: 144 KQEDVSVQLEALDIMADMLSRQGGLLVNFHP-SILTCLLPQLTSPRLAVRKRTIIALGHL 202
Query: 193 TAGNRQQIQAVIDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGC 251
+ ++ L+ L K T + I A S +I +++
Sbjct: 203 VMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCIA-AISRQAGHRIGEYLEK-I 256
Query: 252 IEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284
I + + D ++ + + E+ ++ +E
Sbjct: 257 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289
Score = 27.4 bits (59), Expect = 10.0
Identities = 18/158 (11%), Positives = 54/158 (34%), Gaps = 11/158 (6%)
Query: 170 LLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAW 229
LL + S + R A + + ++ + + ++++L+ + + A
Sbjct: 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 70
Query: 230 AITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILK-LGEEEAKQT 288
+ S Q+ ++ C + ++ ++ GL+ ++ L +
Sbjct: 71 CLGPLVSKVKEYQVETIVDT-----LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125
Query: 289 GSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDII 326
+ N + + E++ + +A DI+
Sbjct: 126 LAANVCKKITGRL-----TSAIAKQEDVSVQLEALDIM 158
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 45.6 bits (107), Expect = 2e-05
Identities = 26/284 (9%), Positives = 78/284 (27%), Gaps = 63/284 (22%)
Query: 4 RMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVR-NSVWV 62
+ ++ + + + + S I+Y + + + +V +
Sbjct: 451 KYILRTELISFLKREM--------HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKI 502
Query: 63 LSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVL------------------------ 98
+ K + ++ A L+R+L +P ++
Sbjct: 503 ILEYLANKQDIGEPIRILGCRA-LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD 561
Query: 99 ---------------ADACWAISYLSDGPNEKIQAVI-----DAGVCRRLVELLMHDQHK 138
+A A++ L+ + V + L++ +
Sbjct: 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621
Query: 139 VVSAALRAVGNIVTGDDQQTQVILN------CSALMCLLHLIQSPKESIRKEACWAVSNI 192
+ + L + N+++ N L+ L+Q ++ +NI
Sbjct: 622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANI 681
Query: 193 TAGNRQQIQAVIDAN-IFPSLIEIL--QKAEFKTRKEAAWAITN 233
+ ++ + + I++ Q + + R+
Sbjct: 682 ATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725
Score = 38.6 bits (89), Expect = 0.003
Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 17/228 (7%)
Query: 70 KTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLV 129
K + +++ + + + A++YLS + KI + L+
Sbjct: 326 KLTCINLKQLSEIFI---NAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILL 382
Query: 130 ELLMH-DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWA 188
++ + L + N+ T ++ P A
Sbjct: 383 TMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXX-PAADKVGAEKAA 441
Query: 189 VSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ 248
+I N + ++ + L + +++ I N T + + I L Q
Sbjct: 442 KEDILLFNEK---YILRTELISFLKREMHNLSPNCKQQVVRIIYNITR--SKNFIPQLAQ 496
Query: 249 QGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVV 296
QG ++ E L + + G + + NP ++
Sbjct: 497 QGAVKIILEYLANKQDIGEPIRILGCRAL-------TRMLIFTNPGLI 537
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 68/189 (35%)
Query: 26 QVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVA----- 80
Q T P++ M + L + +G P A
Sbjct: 1730 QFTQPALTLMEK----------------AAFE----DLKS--KGLIPADAT--FAGHSLG 1765
Query: 81 --PALACLS---------RLLFH-------ADP-DVLADACWAISYLSDGPNEKIQAVID 121
ALA L+ ++F+ A P D L + + + ++ G ++ A
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG---RVAASFS 1822
Query: 122 AGVCRRLVELLMHDQHKVVSAALRAVGNI-VTGDDQQTQVI------LNCSALMCLLHLI 174
+ +VE + +V N V QQ V L+ + +L+ I
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIV-----NYNVEN--QQY-VAAGDLRALD--TVTNVLNFI 1872
Query: 175 QSPKESIRK 183
+ K I +
Sbjct: 1873 KLQKIDIIE 1881
Score = 32.3 bits (73), Expect = 0.34
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 42/131 (32%)
Query: 209 FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQ--QGCIEPFCELLTLLDAKI 266
P LI ++Q A + +T G TP ++R ++ G + L+ A
Sbjct: 238 CP-LIGVIQLAHY--------VVTAKLLGFTPGELRSYLKGATGHSQ------GLVTAVA 282
Query: 267 I----------QVALNGLENILKLGEE--EAKQTGSVNPYVVLIEE------------CY 302
I + + +G EA S+ P ++
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 303 GLDKIEFLQSH 313
L + E +Q +
Sbjct: 343 NLTQ-EQVQDY 352
Score = 29.2 bits (65), Expect = 2.8
Identities = 38/293 (12%), Positives = 88/293 (30%), Gaps = 93/293 (31%)
Query: 75 DFAKVAPALACLSRLLFH-ADPDVLADACWAISYLS-DGPNEKIQAVIDAGVC-RRLVEL 131
D K + A ++ +++ AD ++I + + P + G +R+ E
Sbjct: 1634 DLYKTSKA----AQDVWNRADNHFKDTYGFSILDIVINNPVNL--TIHFGGEKGKRIREN 1687
Query: 132 LM-------HDQHKVVSAALRAVGNIVT-----GDD------QQTQV-ILNCSALMCLLH 172
D + + T + Q TQ +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME--KAAFE 1745
Query: 173 LIQSPKESIRKEACWA----------VSNITAGNRQQIQAVIDANIFPSLIEILQKAEFK 222
++S K I +A +A S A V+ SL+E++
Sbjct: 1746 DLKS-KGLIPADATFAGHSLGEYAALAS--LAD-------VMS---IESLVEVV-----F 1787
Query: 223 TR-KEAAWAITNATSGGT--------PDQIRYLIQQGCIEPFCELLTLLDAKIIQV---- 269
R A+ G + P ++ Q ++ E + ++++
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 270 -------------ALNGLENILK-LGEEEAKQTGSVNPYVVLIEECYGLDKIE 308
AL+ + N+L + ++ ++ +++ L+++E
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKID--------IIELQKSLSLEEVE 1892
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 37.4 bits (87), Expect = 0.007
Identities = 44/251 (17%), Positives = 84/251 (33%), Gaps = 25/251 (9%)
Query: 77 AKVAPALA-CLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD 135
K+ L L + L DP V A ++ L D + V D G L +L+
Sbjct: 116 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS 172
Query: 136 QHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAG 195
VV+ A+ A+ I + LN + LL + E + +SN
Sbjct: 173 NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK 232
Query: 196 NRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPF 255
+ ++ Q++ + + L A A + D ++
Sbjct: 233 DDREAQSICE-----RVTPRLSHANSAVVLSAVKVLMKFLELLPKDS---DYYNMLLKKL 284
Query: 256 CELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHEN 315
L L + +V L NI + + K+ + + K+ F++ ++
Sbjct: 285 APPLVTLLSGEPEVQYVALRNINLIVQ---KRPEILKQEI----------KVFFVKYNDP 331
Query: 316 IEIYQKAFDII 326
I + + DI+
Sbjct: 332 IYVKLEKLDIM 342
Score = 30.1 bits (68), Expect = 1.2
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145
L D D + A AI + + + + L++L+ + VV A+
Sbjct: 358 LKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVST-----LLDLIQTKVNYVVQEAIV 412
Query: 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACW 187
+ +I + + I+ + L L + P R W
Sbjct: 413 VIRDIFRKYPNKYESII--ATLCENLDSLDEPD--ARAAMIW 450
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 36.8 bits (84), Expect = 0.014
Identities = 45/301 (14%), Positives = 87/301 (28%), Gaps = 40/301 (13%)
Query: 36 SLDNNILYPLIDKPKNRLSMVRNSV-WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHAD 94
L + LI+ K+ +VR++ W + +C L A+
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE 463
Query: 95 PDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGD 154
P V ++ CWA S L++ E D L +V L T
Sbjct: 464 PRVASNVCWAFSSLAEAAYEAADVADDQEEP--ATYCLSSSFELIVQKLLET-----TDR 516
Query: 155 DQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA------GNRQQIQAVIDANI 208
Q L SA L+ ++++ + I IQ+ D
Sbjct: 517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQ 576
Query: 209 FPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLL--DAKI 266
F L +L D ++ + + +
Sbjct: 577 FNDLQSLLCAT----------LQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGV 624
Query: 267 IQVALNGLENILK-LGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDI 325
+ AL + +++ LG E K + P++ L+++ ++ A +
Sbjct: 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFL-----------GIGLKNYAEYQVCLAAVGL 673
Query: 326 I 326
+
Sbjct: 674 V 674
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.021
Identities = 54/352 (15%), Positives = 102/352 (28%), Gaps = 115/352 (32%)
Query: 47 DKPKNRLSMVRNSVWVLSNLCRGKTPP----PDFAKVAP-----ALACLSRLLFHAD-PD 96
+ P+ L M L L P D + A L RLL +
Sbjct: 193 NSPETVLEM-------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 97 ---VLADACWAISYLSDGPNEKIQAVIDAGVCRRLV--------ELLMHDQHKVVSAALR 145
VL + N K + C+ L+ + L +S
Sbjct: 246 CLLVLLNVQ----------NAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 146 AVGNIVTGDDQQTQV--ILNCSA-----LMCLLH--LIQSPKESIRKEA----------C 186
++ +T D+ ++ + L+C + + + ESIR C
Sbjct: 295 SMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 187 WAVSNI---------TAGNRQQIQA-VI---DANIFPSLIEILQKAEFKTRKEAAWAITN 233
++ I A R+ + A+I L+ ++ W
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------WF--- 397
Query: 234 ATSGGTPDQIRYLIQQGCIEPFCELLTLL--DAKIIQVALNGL--ENILKLGEEEAKQTG 289
D I+ + + +L+ K +++ + E +KL E A
Sbjct: 398 -------DVIKSDVMV--VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 290 SVNPYVVLIEECYGLDKI----------EFLQSH-ENIEIYQKAFDIIEHYF 330
V+ Y I + + D + + H +NIE ++ + F
Sbjct: 449 IVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVF 497
Score = 34.8 bits (79), Expect = 0.055
Identities = 57/368 (15%), Positives = 106/368 (28%), Gaps = 97/368 (26%)
Query: 3 TR--MVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
TR V D + + L H +T E SL L D L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYL----DCRPQDL------- 318
Query: 61 WVLSNLCRGKTPPPDFAKVAP-ALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAV 119
P + P L+ ++ + W +K+ +
Sbjct: 319 ------------PREVLTTNPRRLSIIAESI-RDGLAT-----W--DNWKHVNCDKLTTI 358
Query: 120 IDAGV-------CRRLVELL--MHDQHKVVSAALRAV-GNIVTGDDQQTQVILNCSALMC 169
I++ + R++ + L + + L + +++ D ++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV---------VVN 409
Query: 170 LLH----LIQSPKES-IRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTR 224
LH + + PKES I + + + N + S+++ +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--------SIVD-----HYNIP 456
Query: 225 KEAAWAITNATSGGTPDQ-----IRY-LIQQGCIEPFCELLTL------LDAKIIQV--A 270
K + DQ I + L E + L+ KI A
Sbjct: 457 KTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 271 LNGLENILKLGEEEAKQTGSVNPYVVLIEECYGL---DKIEFLQSHENIEIYQKAFDIIE 327
N +IL +Q PY+ + Y ++FL E I K D++
Sbjct: 514 WNASGSILNT----LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 328 HYFGSEEE 335
+E+E
Sbjct: 570 IALMAEDE 577
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 35.0 bits (80), Expect = 0.035
Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 25/234 (10%)
Query: 54 SMVR-NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSD-- 110
MVR + L + +++ P S L V A A ++
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMF---SNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 111 GPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVT--GDDQQTQVILNCSALM 168
+ V+ L + +V + G + ++
Sbjct: 235 PQEDLEALVMPT-----LRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPA---- 285
Query: 169 CLLHLIQSPKESIRKEACWAVSNITAG-NRQQIQAVIDANIFPSLIEILQKAEFKTRKEA 227
+L++ + +R A V + + VI + I P + E++ A +
Sbjct: 286 -FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSAL 344
Query: 228 AWAITN-ATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKL 280
A I + G + I +L+ F L ++ ++ L+ + ++
Sbjct: 345 ASVIMGLSPILGKDNTIEHLLP-----LFLAQLKDECPEVRLNIISNLDCVNEV 393
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 34.5 bits (78), Expect = 0.069
Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 133 MHDQHKVVSAALRAVGNIVTGDDQQTQVILN-----CSALMCLLHLIQSPKESIRKEACW 187
D + + AL GNI T +LN + L P +R +A
Sbjct: 421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK 480
Query: 188 AVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA-TSGGTPDQIRYL 246
+ R Q+ + P L LQ E+ AA I T + ++
Sbjct: 481 YIYTF----RNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI 536
Query: 247 IQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEE 284
+ I +L +I + L + KL E E
Sbjct: 537 FHKEDISNS---TEILLKNLIALILKHGSSPEKLAENE 571
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.089
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 12/35 (34%)
Query: 50 KNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALA 84
K L ++ S+ K D APALA
Sbjct: 19 KQALKKLQASL---------KLYADD---SAPALA 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 33.3 bits (76), Expect = 0.15
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 132 LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSN 191
L H V AL +G + + + + + L+++ +RK+A +
Sbjct: 116 LNHSTQFVQGLALCTLGCMGSSE-------MCRDLAGEVEKLLKTSNSYLRKKAALCAVH 168
Query: 192 I 192
+
Sbjct: 169 V 169
Score = 31.8 bits (72), Expect = 0.44
Identities = 31/267 (11%), Positives = 73/267 (27%), Gaps = 46/267 (17%)
Query: 77 AKVAPALA-CLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHD 135
+++ LA + +LL ++ + A ++ E ++ + LL
Sbjct: 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLP-----ATKNLLNEK 191
Query: 136 QHKVVSAALRAVGNIVTGDDQQTQVILNC-----SALMCLLHLIQSPKESIRKEAC-W-- 187
H V+ ++ + + L L+ SP+ + + +
Sbjct: 192 NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251
Query: 188 -----AVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAW---AITNATSGGT 239
+ + + + + L ++ E A + +
Sbjct: 252 VRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS 306
Query: 240 PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIE 299
+R L I L D I VAL L ++ + V
Sbjct: 307 ESGLRVL----AINILGRFLLNNDKNIRYVALTSLLKTVQ-----------TDHNAVQRH 351
Query: 300 ECYGLDKIEFLQSHENIEIYQKAFDII 326
I ++ I ++A ++
Sbjct: 352 R----STIVDCLKDLDVSIKRRAMELS 374
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 32.0 bits (72), Expect = 0.29
Identities = 22/192 (11%), Positives = 48/192 (25%), Gaps = 36/192 (18%)
Query: 103 WAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVIL 162
I +S + I L + + + A+RA+ I
Sbjct: 90 LTIKEMSCIAEDVIIV------TSSLTKDMTGKEDSYRGPAVRALCQITDST-------- 135
Query: 163 NCSALM-CLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID--------------AN 207
A+ + I S+ A + ++ + ++ ++ +
Sbjct: 136 MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYH 195
Query: 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKII 267
L + + K I+ T G I L D
Sbjct: 196 ALGLLYHVRKNDRLAVSK----MISKFTRHGLKSP---FAYCMMIRVASRQLEDEDGSRD 248
Query: 268 QVALNGLENILK 279
+ +E+ L+
Sbjct: 249 SPLFDFIESCLR 260
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 31.7 bits (71), Expect = 0.38
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 94 DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
+ ++ A I+++ + E I + G ++ELL H +V AL+A I+
Sbjct: 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo
sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Length = 341
Score = 30.3 bits (68), Expect = 0.89
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAA 228
Q Q + ++ + +L+ LQ +F+ +K+ A
Sbjct: 69 QLAQELYNSGLLSTLVADLQLIDFEGKKDVA 99
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 29.8 bits (66), Expect = 1.3
Identities = 13/79 (16%), Positives = 28/79 (35%)
Query: 54 SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN 113
S + ++ + + V AL L + L + + IS + DG
Sbjct: 181 SADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLV 240
Query: 114 EKIQAVIDAGVCRRLVELL 132
+ A I +++ +L+
Sbjct: 241 YREGAPIIRLKAKKVSDLI 259
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 28.4 bits (63), Expect = 4.2
Identities = 31/279 (11%), Positives = 79/279 (28%), Gaps = 51/279 (18%)
Query: 63 LSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDA 122
+ + + A CL RL + PD++ W
Sbjct: 151 IPKILVAGDTMDSVKQSA--ALCLLRL-YRTSPDLVPMGDWT------------------ 189
Query: 123 GVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM---CLLHLIQSPKE 179
R+V LL VV+AA + + + ++ + ++ + + ++
Sbjct: 190 ---SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQD 246
Query: 180 SIRKEAC--W-------AVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKE--AA 228
W + ++ + + L + + + K + A
Sbjct: 247 YTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAK 306
Query: 229 WAIT-NATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
A+ A S + + L + + +AL + +
Sbjct: 307 NAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLAS-------- 358
Query: 288 TGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDII 326
++ + I L++ ++ + Q+A D++
Sbjct: 359 ---SEFSHEAVKT-HIETVINALKTERDVSVRQRAVDLL 393
Score = 27.6 bits (61), Expect = 8.5
Identities = 8/88 (9%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 132 LMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKES--IRKEACWAV 189
L + AL + N+ + + + + + ++ + +++ A +
Sbjct: 120 LASRNPTFMGLALHCIANVGSRE-------MAEAFAGEIPKILVAGDTMDSVKQSAALCL 172
Query: 190 SNITAGNRQQIQAVIDANIFPSLIEILQ 217
+ R V + ++ +L
Sbjct: 173 LRL---YRTSPDLVPMGDWTSRVVHLLN 197
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase,
hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp}
PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Length = 537
Score = 27.8 bits (62), Expect = 6.9
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 296 VLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF-GSEEEDT--RVAPCVTHDASGAQE 352
L + + +Q +Y K E+D V +++ A+
Sbjct: 190 ALEVAREEIAWLLTMQDPATGGVYHKVTTPSFPPLDTRPEDDDAPLVLSPISYAATATFC 249
Query: 353 FTFAGA 358
A A
Sbjct: 250 AAMAHA 255
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 27.5 bits (61), Expect = 8.9
Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 173 LIQSPKE-SIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAE--FKTRKEAAW 229
L+ S K ++RK NR++ F L + + + FK ++W
Sbjct: 181 LLDSVKAKTLRKLIQQTFRQFANLNREESIL----KFFEILSPVYRFDKECFKCALGSSW 236
Query: 230 AITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQ---VALNGLENILKLGEEEAK 286
I+ + G + I YL +G P L + IQ + +L+L A
Sbjct: 237 IISVELAIGPEEGISYLTDKGA-NPTH-LADFNQVQTIQYSNSEDKDRKGMLQLKIAGAP 294
Query: 287 QTGSVNPYVVLIEECYGLDKIEFL 310
+ +V + I E D I+
Sbjct: 295 EPLTVTAPSLTIAENM-ADLIDGY 317
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor
domain, binding core domain, signaling protein; 3.00A
{Rattus norvegicus} PDB: 3uj0_A 3t8s_A*
Length = 604
Score = 27.2 bits (59), Expect = 9.7
Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 12/146 (8%)
Query: 204 IDANIFPSLIEILQK-AEFKTRKEAAWAITNATSGGTPDQIR--YLIQQGCIEPFCELLT 260
I N S+ ++L+ F T + P++ R + +Q ++ +
Sbjct: 465 ITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQ---IFK 521
Query: 261 LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQ 320
LL A + + +LG++ P+ + Y + + +N E
Sbjct: 522 LLQAPFTDAGDGPMLRLEELGDQRHA------PFRHIARLAYRVLRHSQQDYRKNQEYIA 575
Query: 321 KAFDIIEHYFGSEEEDTRVAPCVTHD 346
K F ++ G + + H+
Sbjct: 576 KQFGFMQKQIGYDVLAEDTITALLHN 601
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,787,051
Number of extensions: 350933
Number of successful extensions: 1274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 125
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)