RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy664
(379 letters)
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 224 bits (570), Expect = 3e-69
Identities = 178/350 (50%), Positives = 242/350 (69%), Gaps = 16/350 (4%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTHP-------SVETMSLDNNILYPLIDKPKNRL- 53
QT++V+DA AVP+FIQLL + + + ++ + +L +P L
Sbjct: 154 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF 213
Query: 54 -----SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108
S++R + W LSNLCRGK P PD++ V+ AL L++L++ D + L DACWAISYL
Sbjct: 214 NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYL 273
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168
SDGP E IQAVID + +RLVELL H+ V + ALRAVGNIVTG+D QTQV++N L
Sbjct: 274 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP 333
Query: 169 CLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAA 228
L L+ SPKE+I+KEACW +SNITAGN +QIQAVIDAN+ P L+++L+ AE+KT+KEA
Sbjct: 334 ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 393
Query: 229 WAITNATSGGT--PDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAK 286
WAI+NA+SGG PD IRYL+ QGCI+P C+LL + D +II+V L+ LENILK+GE + +
Sbjct: 394 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 453
Query: 287 QTG-SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYFGSEEE 335
G ++N IE+ G++KI Q +EN +IY+KA+ IIE YFG EE+
Sbjct: 454 ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 503
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 171 bits (433), Expect = 7e-50
Identities = 145/289 (50%), Positives = 190/289 (65%), Gaps = 4/289 (1%)
Query: 42 LYPLIDKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADA 101
L + D +RN W LSNLCR K P P V L L RLL H DP+VLAD+
Sbjct: 149 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 208
Query: 102 CWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVI 161
CWAISYL+DGPNE+I+ V+ GV +LV+LL + +V+ ALRA+GNIVTG D+QTQ +
Sbjct: 209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 268
Query: 162 LNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEF 221
++ AL L+ +PK +I+KEA W +SNITAG + QIQ V++ + P L+ +L KA+F
Sbjct: 269 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 328
Query: 222 KTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLG 281
KT+KEAAWAITN TSGGT +QI YL+ G IEP LL+ D KIIQV L+ + NI +
Sbjct: 329 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388
Query: 282 EEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
E + G ++IEEC GLDKIE LQ HEN +Y+ + ++IE YF
Sbjct: 389 E----KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433
Score = 76.4 bits (186), Expect = 7e-16
Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 8/183 (4%)
Query: 88 RLLFHADPDVLADACWAI-SYLSDGPNEKIQAVIDAGVCRRLVELLMHDQH-KVVSAALR 145
+ + + + A A LS I +I AG+ + V L + +
Sbjct: 20 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAW 79
Query: 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205
A+ NI +G +QT+ +++ A+ + L+ SP I ++A WA+ NI VI
Sbjct: 80 ALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK 139
Query: 206 ANIFPSLIEILQKAEFKTRK-----EAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLT 260
L+ +L + T W ++N P + + LL
Sbjct: 140 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP-PLDAVEQILPTLVRLLH 198
Query: 261 LLD 263
D
Sbjct: 199 HND 201
Score = 56.0 bits (133), Expect = 3e-09
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 170 LLHLIQSPKESIRKEACWAVSNITAGNRQQ-IQAVIDANIFPSLIEILQKAEF-KTRKEA 227
++ I S + +A A + + +Q I +I A + P + L K + + E+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 228 AWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283
AWA+TN S GT +Q + ++ G I F LL A I + A+ L NI G
Sbjct: 78 AWALTNIAS-GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 72.2 bits (175), Expect = 2e-14
Identities = 19/133 (14%), Positives = 42/133 (31%)
Query: 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145
+ L D A + I + Q V G +LV+LL V AA
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66
Query: 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205
A+ N+V + + + L++ + ++ + + + + +I
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126
Query: 206 ANIFPSLIEILQK 218
+ ++
Sbjct: 127 DALPVLADRVIIP 139
Score = 70.2 bits (170), Expect = 8e-14
Identities = 32/346 (9%), Positives = 87/346 (25%), Gaps = 48/346 (13%)
Query: 2 QTRMVIDAGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLID-- 47
+ V G + + LL SP+++ + + + N + +
Sbjct: 36 AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95
Query: 48 KPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAP--------------ALACLSRLLFHA 93
+ + + +L NL + A +
Sbjct: 96 RRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155
Query: 94 DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVS------------ 141
DP+V +A + LS + +G+ L+ + +
Sbjct: 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215
Query: 142 --AALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQ 199
+ R + T Q N + + + N +
Sbjct: 216 HNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275
Query: 200 IQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRY-----LIQQGCIEP 254
+ ++ + + ++ K++ EA + +++ +
Sbjct: 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQ 335
Query: 255 FCELLTLLDAKIIQVALNGLENILKLGE-EEAKQTGSVNPYVVLIE 299
LL ++ +++ + L N+ + L+
Sbjct: 336 IARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLT 381
Score = 69.9 bits (169), Expect = 9e-14
Identities = 17/133 (12%), Positives = 46/133 (34%), Gaps = 1/133 (0%)
Query: 127 RLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEAC 186
+ V+ L K + + + D+ Q + + L+ L++SP +++++ A
Sbjct: 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65
Query: 187 WAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYL 246
A+ N+ + N + +L++ ++ + S + L
Sbjct: 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EEL 124
Query: 247 IQQGCIEPFCELL 259
I ++
Sbjct: 125 IADALPVLADRVI 137
Score = 59.5 bits (142), Expect = 2e-10
Identities = 24/275 (8%), Positives = 62/275 (22%), Gaps = 15/275 (5%)
Query: 54 SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPN 113
+ + + C + L LL + +V A A+ L
Sbjct: 17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76
Query: 114 EKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHL 173
R V LL + + L + ++ D+ + ++ + + +
Sbjct: 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136
Query: 174 I---------------QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQK 218
I + + A + N+++ + + + + SL+ +Q
Sbjct: 137 IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196
Query: 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
+R + + ++
Sbjct: 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDK 256
Query: 279 KLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH 313
+ Y D I +
Sbjct: 257 MMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291
Score = 44.0 bits (102), Expect = 2e-05
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 1/104 (0%)
Query: 210 PSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQV 269
P ++ L + K + A+ I + + + Q G I +LL + + Q
Sbjct: 5 PKAVQYLSSQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 270 ALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSH 313
A L N++ +T N + E +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQL 107
Score = 41.4 bits (95), Expect = 1e-04
Identities = 23/174 (13%), Positives = 52/174 (29%), Gaps = 24/174 (13%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMS------------------LDNNIL 42
+ + + A+ ++ L+ +D + L L
Sbjct: 274 KGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGL 333
Query: 43 YPLIDKPKNRLSMV-RNSVWVLSNLCRGKTPPPDFAKVA-PALACLSRLLFH---ADPDV 97
+ ++ S V R+ +LSN+ R P + L D+
Sbjct: 334 PQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDI 393
Query: 98 LADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLM-HDQHKVVSAALRAVGNI 150
L+ AC+ + L + + + + ++ L K AA + ++
Sbjct: 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 264
Score = 57.0 bits (136), Expect = 6e-10
Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 20/197 (10%)
Query: 4 RMVIDAGAVPVFIQLLLSPHEDQV-------------THPSVETMSLDNNILYPLID--K 48
+ + + L + +++ L L L+
Sbjct: 52 ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 111
Query: 49 PKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYL 108
++ +++ +S L R + + L R + + + + + L
Sbjct: 112 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 171
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNC---- 164
G E + G+ ++LV L+ + L A+ ++VT Q +
Sbjct: 172 LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 231
Query: 165 -SALMCLLHLIQSPKES 180
L L+Q +E
Sbjct: 232 EELLRHRCQLLQQHEEY 248
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 58.4 bits (139), Expect = 6e-10
Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 15/262 (5%)
Query: 9 AGAVPVFIQLLLSPHEDQVTH------------PSVETMSLDNNILYPLID--KPKNRLS 54
A+P +LL + V S + ++ ++ + N +
Sbjct: 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75
Query: 55 MVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNE 114
R + L NL + K + + L ++L VL A + L
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134
Query: 115 KIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI 174
AV AG +++V LL K ++ + + G+ + +IL L++++
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194
Query: 175 QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA 234
++ V + + A+++A +L L + + W + N
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254
Query: 235 TSGGTPDQIRYLIQQGCIEPFC 256
+ T + + ++
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLG 276
Score = 55.7 bits (132), Expect = 4e-09
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 9/150 (6%)
Query: 1 MQTRMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSV 60
+ + GA+P +QLL+ H+D S+ ++ + +V
Sbjct: 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG------GTQQQFVEGVRME-EIVEGCT 440
Query: 61 WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVI 120
L L R + +LL+ ++ A + L+ +A+
Sbjct: 441 GALHILARDVHNRIVIRG-LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-EAIE 498
Query: 121 DAGVCRRLVELLMHDQHKVVSAALRAVGNI 150
G L ELL V + A + +
Sbjct: 499 AEGATAPLTELLHSRNEGVATYAAAVLFRM 528
Score = 51.0 bits (120), Expect = 1e-07
Identities = 33/250 (13%), Positives = 68/250 (27%), Gaps = 28/250 (11%)
Query: 54 SMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVL-----ADACWAISYL 108
++V + +LSNL + L R + A A ++
Sbjct: 281 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340
Query: 109 SDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALM 168
AV +V+LL H + A + + + A+
Sbjct: 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 400
Query: 169 CLLHLIQSPKESIRKEACWAVSN---------------------ITAGNRQQIQAVIDAN 207
L+ L+ + ++ + I A + + N
Sbjct: 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 460
Query: 208 IFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKII 267
P +++L ++ AA + + + +G P ELL + +
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVA 518
Query: 268 QVALNGLENI 277
A L +
Sbjct: 519 TYAAAVLFRM 528
Score = 34.5 bits (77), Expect = 0.023
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 30/105 (28%)
Query: 5 MVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLS 64
++ +P+F+QLL SP E+ + R + VL
Sbjct: 455 VIRGLNTIPLFVQLLYSPIEN-----------------------------IQRVAAGVLC 485
Query: 65 NLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLS 109
L + K A A L+ LL + V A + +S
Sbjct: 486 ELAQDKEAAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMS 529
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 55.2 bits (132), Expect = 6e-09
Identities = 48/349 (13%), Positives = 107/349 (30%), Gaps = 35/349 (10%)
Query: 4 RMVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLD----NNILYPLIDKPKNRL--SMVR 57
+MV D G + L+ + V + + N+ L L + N+L ++
Sbjct: 151 QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE 210
Query: 58 NSVWVLSNLCR--GKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAI-SYLSDGPNE 114
+ W + P D + ++ L HA+ V+ A + +L P +
Sbjct: 211 CTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD 270
Query: 115 KIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLI 174
+ + L+ + +V ALR + IV + + +
Sbjct: 271 SDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILK-----QEIKVFFVKY 325
Query: 175 QSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNA 234
P ++ + + N Q+ L E + + ++A AI
Sbjct: 326 NDPIYVKLEKLDIMIRLASQANIAQV--------LAELKEYATEVDVDFVRKAVRAIGRC 377
Query: 235 TSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPY 294
R C+ +L+ ++Q A+ + +I + + + +
Sbjct: 378 AIKVEQSAER------CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESI--IATL 429
Query: 295 VVLIEECYGLD----KIEFLQSH-ENIEIYQKAFDIIEHYFGSEEEDTR 338
++ D I + + E I+ + + F E +
Sbjct: 430 CENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQ 478
Score = 38.2 bits (88), Expect = 0.001
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 11/164 (6%)
Query: 124 VCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRK 183
V+ + + A+R +G I + L ++ +RK
Sbjct: 84 AVNSFVKDCEDPNPLIRALAVRTMGCIRVDK-------ITEYLCEPLRKCLKDEDPYVRK 136
Query: 184 EACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQI 243
A + + Q V D SL +++ + A A++ + +
Sbjct: 137 TAAVC---VAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 193
Query: 244 RYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQ 287
L Q I L L+ L N + EA+
Sbjct: 194 LDLNPQ-NINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS 236
Score = 27.4 bits (60), Expect = 3.0
Identities = 23/194 (11%), Positives = 50/194 (25%), Gaps = 33/194 (17%)
Query: 135 DQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITA 194
+ K A + + + G D S +++ +Q+ ++K + N
Sbjct: 23 KKEKRKEAVKKVIAAMTVGKDVS-------SLFPDVVNCMQTDNLELKKLVYLYLMNYAK 75
Query: 195 GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEP 254
+ S ++ + R A + YL +
Sbjct: 76 SQPDMAIMAV-----NSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYLCE------ 121
Query: 255 FCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHE 314
L L + V + K +N +V + D + L +
Sbjct: 122 --PLRKCLKDEDPYVRKTAAVCVAK--------LHDINAQMVEDQGFL--DSLRDLIADS 169
Query: 315 NIEIYQKAFDIIEH 328
N + A +
Sbjct: 170 NPMVVANAVAALSE 183
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 52.5 bits (125), Expect = 4e-08
Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 23/224 (10%)
Query: 78 KVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQH 137
K +A VL +A I + PN ++A C +L + L H +
Sbjct: 282 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRA------CNQLGQFLQHRET 335
Query: 138 KVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNR 197
+ AL ++ + + + V + + + L S+R+ A + + +R
Sbjct: 336 NLRYLALESMCTLASSEFSHEAVKTHIETV--INALKTERDVSVRQRAVDLLYAMC--DR 391
Query: 198 QQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCE 257
Q I ++ L+ A++ R+E + D ++
Sbjct: 392 SNAQ-----QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW------YVDTILN 440
Query: 258 LLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEEC 301
L+ + + + + I+ + Q + ++
Sbjct: 441 LIRIAGDYVSEEVWYRVIQIVI--NRDDVQGYAAKTVFEALQAP 482
Score = 40.1 bits (93), Expect = 4e-04
Identities = 26/225 (11%), Positives = 74/225 (32%), Gaps = 35/225 (15%)
Query: 104 AISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILN 163
IS L + +E I+ + +A + L + AL + N+ + + +
Sbjct: 89 FISVLVNSNSELIRLINNA-----IKNDLASRNPTFMGLALHCIANVGSRE-----MAEA 138
Query: 164 CSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKT 223
+ + + + +S+++ A + + R V + ++ +L
Sbjct: 139 FAGEIPKILVAGDTMDSVKQSAALCLLRL---YRTSPDLVPMGDWTSRVVHLLNDQHLGV 195
Query: 224 RKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEE 283
A IT + Q E F ++L +++ ++ + ++ +
Sbjct: 196 VTAATSLITT-------------LAQKNPEEFKTSVSLAVSRLSRIVTSASTDL-----Q 237
Query: 284 EAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEH 328
+ P++ L ++ E+ + + + +E
Sbjct: 238 DYTYYFVPAPWLS----VKLLRLLQCYPPPEDPAVRGRLTECLET 278
Score = 35.1 bits (80), Expect = 0.013
Identities = 33/285 (11%), Positives = 80/285 (28%), Gaps = 37/285 (12%)
Query: 58 NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQ 117
++ ++N+ + A+ + V A + L
Sbjct: 122 LALHCIANVG-----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR---TSPD 173
Query: 118 AVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQTQVILNCSALMCLLHLIQSP 177
V R+V LL VV+AA + + + + A+ L ++ S
Sbjct: 174 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA-QKNPEEFKTSVSLAVSRLSRIVTSA 232
Query: 178 KESIRKEACWAVSNITA--------GNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAW 229
++ + V + +E + + K
Sbjct: 233 STDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKV 292
Query: 230 AITNATSGGTPDQIRYLIQQG--------CIEPFCELLTLLDAKIIQVALNGLENILKLG 281
+NA + + I +I + L + + +AL + +
Sbjct: 293 QHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLAS-- 350
Query: 282 EEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDII 326
+V ++ + I L++ ++ + Q+A D++
Sbjct: 351 --SEFSHEAVKTHIETV--------INALKTERDVSVRQRAVDLL 385
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 51.3 bits (121), Expect = 9e-08
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 3/125 (2%)
Query: 94 DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTG 153
D D + C A + I V + E + + + AA+ A G I+ G
Sbjct: 336 DDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 395
Query: 154 DDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLI 213
+ L A+ L+ L++ P +R A W V I +A I+ L+
Sbjct: 396 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLL 452
Query: 214 EILQK 218
+ L +
Sbjct: 453 QCLIE 457
Score = 39.0 bits (89), Expect = 8e-04
Identities = 24/171 (14%), Positives = 42/171 (24%), Gaps = 23/171 (13%)
Query: 84 ACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAA 143
A + +V S + D + +A R E K
Sbjct: 261 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 320
Query: 144 LRAVGNIVTGDDQQTQVILNCSALMC-----------------------LLHLIQSPKES 180
L + + + + + I++P
Sbjct: 321 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 380
Query: 181 IRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAWAI 231
R A A I G + P+LIE+++ R AAW +
Sbjct: 381 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 431
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 40.4 bits (93), Expect = 3e-04
Identities = 40/308 (12%), Positives = 90/308 (29%), Gaps = 29/308 (9%)
Query: 40 NILYPLIDKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAP-ALACLSRLLFHADPDVL 98
+ PL+ + V +L + P + L + L V
Sbjct: 394 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVR 453
Query: 99 ADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIVTGDDQQT 158
+ CW +S + + + L++ ++ +V AA A + +
Sbjct: 454 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 513
Query: 159 QVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQI-QAVIDANIFPSLIEILQ 217
L L L+ + A+ + + + + P LI+
Sbjct: 514 VPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN 572
Query: 218 K--AEFKTRKEAAWAITNATSGGTPDQIRYL--IQQGCIEPFCELL-------------T 260
E K +++ + + Y + Q C+ + L
Sbjct: 573 MLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE 632
Query: 261 LLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQ 320
D + VAL+ L + + +Q + + + L+ +C + E+ Q
Sbjct: 633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC---------MQDKMPEVRQ 683
Query: 321 KAFDIIEH 328
+F ++
Sbjct: 684 SSFALLGD 691
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 35.5 bits (80), Expect = 0.010
Identities = 17/158 (10%), Positives = 52/158 (32%), Gaps = 9/158 (5%)
Query: 170 LLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSLIEILQKAEFKTRKEAAW 229
LL + S + R A + + ++ + + ++++L+ + + A
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 230 AITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTG 289
+ S Q+ ++ C + ++ ++ GL+ ++ + +
Sbjct: 68 CLGPLVSKVKEYQVETIVDT-----LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 122
Query: 290 SVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIE 327
I + E++ + +A DI+
Sbjct: 123 LAANVCKKITGRL----TSAIAKQEDVSVQLEALDIMA 156
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 35.2 bits (79), Expect = 0.015
Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 15/201 (7%)
Query: 34 TMSLDNNILYPLIDKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHA 93
L ++L +++ ++ VR ++ L G+ F + +L +
Sbjct: 396 IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455
Query: 94 DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNI--V 151
A + G +I +++ + + L + + V
Sbjct: 456 AIREAATSNLKKLVEKFGKEWAHATIIP-----KVLAMSGDPNYLHRMTTLFCINVLSEV 510
Query: 152 TGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPS 211
G D T+ +L +L + P ++R ++ I + + + + P
Sbjct: 511 CGQDITTKHMLPT-----VLRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQSEVKPI 562
Query: 212 LIEILQKAEFKTRKEAAWAIT 232
L ++ Q + + A A+T
Sbjct: 563 LEKLTQDQDVDVKYFAQEALT 583
Score = 27.8 bits (60), Expect = 2.3
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 39 NNILYPLIDKPKNRLSMVRNSV-WVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDV 97
++L ++ + ++ VR +V L + ++V P L +L D DV
Sbjct: 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL---EKLTQDQDVDV 574
Query: 98 LADACWAISYLS 109
A A++ LS
Sbjct: 575 KYFAQEALTVLS 586
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 31.4 bits (69), Expect = 0.17
Identities = 15/145 (10%), Positives = 32/145 (22%), Gaps = 21/145 (14%)
Query: 86 LSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALR 145
L RLL + + + Q + +E +
Sbjct: 24 LFRLLDDHNSLKRISSARVLQLRGG------QDAVRL-----AIEFCSDKNYIRRDIGAF 72
Query: 146 AVGNIVTGDDQQTQVILNCSALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVID 205
+G I + + + + +R A + + N +
Sbjct: 73 ILGQIKICKKCE-----DNVFNILNNMALNDKSACVRATAIESTAQRCKKN-----PIYS 122
Query: 206 ANIFPSLIEILQKAEFKTRKEAAWA 230
I R+ A+A
Sbjct: 123 PKIVEQSQITAFDKSTNVRRATAFA 147
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 31.0 bits (69), Expect = 0.24
Identities = 21/176 (11%), Positives = 43/176 (24%), Gaps = 12/176 (6%)
Query: 165 SALMCLLHLIQSPKESIRKEACWAVSNI------TAGNRQQIQAVIDANIFPSLIEILQK 218
+ L +Q+ + + A + I +N L++ L
Sbjct: 496 ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIA 555
Query: 219 AEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTLLDAKIIQVALNGLENIL 278
K N + ++ + F +LL + +A N
Sbjct: 556 LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615
Query: 279 KLGEEEA----KQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIEHYF 330
E+ +L++ + S + E F II
Sbjct: 616 THYTFESIGAILNYTQRQNLPLLVDSMMPT--FLTVFSEDIQEFIPYVFQIIAFVV 669
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 477
Score = 30.3 bits (68), Expect = 0.47
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 94 DPDVLADACWAISYLSDGPNEKIQAVIDAGVCRRLVELLMHDQHKVVSAALRAVGNIV 151
+ ++ A I+++ + E I + G ++ELL H +V AL+A I+
Sbjct: 415 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 472
>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus),
alpha-chain [TaxId: 10090]}
Length = 113
Score = 26.3 bits (57), Expect = 2.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 331 GSEEEDTRVAPCVTHDASGAQEFTFAGATQ 360
++ ED+ C +SG+ + F TQ
Sbjct: 77 DAQLEDSGTYFCAAEASSGSWQLIFGSGTQ 106
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 27.8 bits (60), Expect = 3.0
Identities = 18/162 (11%), Positives = 50/162 (30%), Gaps = 27/162 (16%)
Query: 94 DPDVLADACWAISYLSDGPNEKIQAVIDA------GVCRRLVELLMHDQHKVVS----AA 143
V ++ + + ++ + V+ +D ++ +
Sbjct: 706 HRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESC 765
Query: 144 LRAVGNIVTGDDQQTQVILNCSALMC--LLHLIQ---------SPKESIRKEACWAVSNI 192
L A IV G + + L+ + ++ + + A + ++
Sbjct: 766 LEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDL 825
Query: 193 TAGNRQQIQAVIDANIFPSLIEILQKA----EFKTRKEAAWA 230
+ + +++A P + E+L + K + A WA
Sbjct: 826 CTAFGKDVLKLVEAR--PMIHELLTEGRRSKTNKAKTLARWA 865
>d2icwg1 a.202.1.1 (G:1-213) Superantigen MAM {Mycoplasma
arthritidis [TaxId: 2111]}
Length = 213
Score = 26.9 bits (59), Expect = 3.1
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 20/69 (28%)
Query: 269 VALNGLENILKL-GEEEAKQTGSVNPYVVLIEECYGLDKIEFLQSHENIEIYQKAFDIIE 327
LE+I L +EE K+ ++ + N + Y+ AF I+
Sbjct: 24 FTNKELEDIYNLSNKEETKEV------------------LKLFKLKVN-QFYRHAFGIVN 64
Query: 328 HYFGSEEED 336
Y G E
Sbjct: 65 DYNGLLEYK 73
>d1h99a1 a.142.1.1 (A:54-168) Transcriptional antiterminator LicT
{Bacillus subtilis [TaxId: 1423]}
Length = 115
Score = 26.0 bits (57), Expect = 3.5
Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 23/104 (22%)
Query: 250 GCIEPFCELLTLLDAKIIQVALNGLENILKLGEEEAKQTGSVNPYVVLI----------- 298
G +E F LL + + ++V+ E I+ + + + + + YV L
Sbjct: 1 GAMEKFKTLLYDIPIECMEVS----EEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQ 56
Query: 299 ----EECYGLDKIEFLQSHENIEIYQKAFDIIEHYFG---SEEE 335
+ L + + L E I ++A ++++ G E+E
Sbjct: 57 KGLDIKNALLWETKRLYKDE-FAIGKEALVMVKNKTGVSLPEDE 99
>d2gsca1 a.29.16.1 (A:9-125) Uncharacterized protein XCC0516
{Xanthomonas campestris pv. campestris [TaxId: 340]}
Length = 117
Score = 26.0 bits (57), Expect = 4.2
Identities = 2/14 (14%), Positives = 9/14 (64%)
Query: 312 SHENIEIYQKAFDI 325
HE ++ ++ + ++
Sbjct: 2 PHERLDAWRDSMEL 15
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 291
Score = 26.4 bits (58), Expect = 5.1
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 20/132 (15%)
Query: 202 AVIDANIFPSLIEILQKAEFKTRKEAAWAITNATSGGTPDQIRYLIQQGCIEPFCELLTL 261
+ A I L E++++A + + + I F +
Sbjct: 155 FIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENG---VLKGFKGELIHVFNKHDGA 211
Query: 262 LDAKIIQVALNGLENILKLGE-----EEAKQTGSVNPYVVLIEECYGLDKIEFLQSH--E 314
L L NI+ LG+ A G N +L KI +L E
Sbjct: 212 LKNTDYFSQLKDNSNIILLGDSQGDLRMAD--GVANVEHIL--------KIGYLNDRVDE 261
Query: 315 NIEIYQKAFDII 326
+E Y ++DI+
Sbjct: 262 LLEKYMDSYDIV 273
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 26.8 bits (58), Expect = 5.1
Identities = 12/122 (9%), Positives = 26/122 (21%), Gaps = 4/122 (3%)
Query: 5 MVIDAGAVPVFIQLLLSPHEDQVTHPSVETMSLDNNILYPLIDKPKNRLSMVRNSVWVLS 64
V G + +++ D L I + + S
Sbjct: 137 HVELNGCKAIN---IVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT-C 192
Query: 65 NLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADACWAISYLSDGPNEKIQAVIDAGV 124
N G+ K +A + D + + I + +
Sbjct: 193 NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 252
Query: 125 CR 126
+
Sbjct: 253 YK 254
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068
{Enterococcus faecalis [TaxId: 1351]}
Length = 213
Score = 25.8 bits (56), Expect = 7.9
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 166 ALMCLLHLIQSPKESIRKEACWAVSNITAGNRQQIQAVIDANIFPSL-----IEILQKA 219
+++ + + I+K W++ + N Q ++ ++ + L + L KA
Sbjct: 155 LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELMKELVLSPLAQREGSKYLAKA 213
>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima
[TaxId: 2336]}
Length = 451
Score = 26.1 bits (57), Expect = 8.3
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 19/88 (21%)
Query: 42 LYPLIDKPKNRLSMVRNSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPDVLADA 101
L +++ +L +V L L P ++ P+V A
Sbjct: 325 LRYFLNEFDGKLKIV------LYVLD-----PTHLPTISTIARAF--------PNVYVGA 365
Query: 102 CWAISYLSDGPNEKIQAVIDAGVCRRLV 129
W + G ++ + + L
Sbjct: 366 PWWFNDSPFGMEMHLKYLASVDLLYNLA 393
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 25.7 bits (56), Expect = 9.9
Identities = 4/39 (10%), Positives = 12/39 (30%)
Query: 58 NSVWVLSNLCRGKTPPPDFAKVAPALACLSRLLFHADPD 96
N++ L ++ + ++P + P
Sbjct: 218 NAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQ 256
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,385,831
Number of extensions: 64045
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 46
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)