BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6641
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
C PG P + V S L TY C RG L G RR C + G W
Sbjct: 131 CSNPGIPIGTRKVGSQYRLEDSV--TYHCSRGLTLRGSQRRTCQEGGSW 177
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 38 LSPGTVATYACERGFELLGPSRRVCDKTGQW 68
L G Y C GF R C TG W
Sbjct: 18 LQEGQALEYVCPSGFYPYPVQTRTCRSTGSW 48
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
C PG P + V S L TY C RG L G RR C + G W
Sbjct: 140 CSNPGIPIGTRKVGSQYRLEDSV--TYHCSRGLTLRGSQRRTCQEGGSW 186
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 38 LSPGTVATYACERGFELLGPSRRVCDKTGQW 68
L G Y C GF R C TG W
Sbjct: 27 LQEGQALEYVCPSGFYPYPVQTRTCRSTGSW 57
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
C PG P + V S L TY C RG L G RR C + G W
Sbjct: 150 CSNPGIPIGTRKVGSQYRLEDSV--TYHCSRGLTLRGSQRRTCQEGGSW 196
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 38 LSPGTVATYACERGFELLGPSRRVCDKTGQW 68
L G Y C GF R C TG W
Sbjct: 37 LQEGQALEYVCPSGFYPYPVQTRTCRSTGSW 67
>pdb|1QUB|A Chain A, Crystal Structure Of The Glycosylated Five-domain Human
Beta2- Glycoprotein I Purified From Blood Plasma
Length = 319
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 11 LPEVSEYEECRFPGAPAHSSIVF-SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
LPE E + C FP P + + + + TL AT+ C G+ L GP C K G W
Sbjct: 178 LPECREVK-CPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNW- 235
Query: 70 PEGIPFCVRWC 80
+P C C
Sbjct: 236 -SAMPSCKASC 245
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C F G + ++ ++ T +++C GF L G C + G+W PE +P C
Sbjct: 65 CPFAGILENGAVRYT--TFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPE-LPVCA 119
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRR-VCDKTGQW 68
C P S++V PG TY+C+ G+ G R+ +C TG W
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLW 53
>pdb|1C1Z|A Chain A, Crystal Structure Of Human Beta-2-Glycoprotein-I
(Apolipoprotein-H)
Length = 326
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 11 LPEVSEYEECRFPGAPAHSSIVF-SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
LPE E + C FP P + + + + TL AT+ C G+ L GP C K G W
Sbjct: 178 LPECREVK-CPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNW- 235
Query: 70 PEGIPFCVRWC 80
+P C C
Sbjct: 236 -SAMPSCKASC 245
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C F G + ++ ++ T +++C GF L G C + G+W PE +P C
Sbjct: 65 CPFAGILENGAVRYT--TFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPE-LPVCA 119
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRR-VCDKTGQW 68
C P S++V PG TY+C+ G+ G R+ +C TG W
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLW 53
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
Receptor 1
Length = 1931
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 35 NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCTGL 83
+ SPG Y+CE G++L G + C G W PE V+ C
Sbjct: 1172 QDNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPEAPRCAVKSCDDF 1220
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 31 IVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC 80
+V N +L S V + C+ GF + GP R C +W PE +P C R C
Sbjct: 207 LVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE-LPSCSRVC 256
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 31 IVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC 80
+V N +L S V + C+ GF + GP R C +W PE +P C R C
Sbjct: 657 LVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE-LPSCSRVC 706
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 31 IVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC 80
+V N +L S V + C+ GF + GP R C +W PE +P C R C
Sbjct: 1107 LVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE-LPSCSRVC 1156
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C+ P H S+ + SPG Y+CE ++L G + C G W PE V+
Sbjct: 1609 CQPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRCTVK 1668
Query: 79 WCTGL 83
C
Sbjct: 1669 SCDDF 1673
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 34 SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
+ SPG Y+CE G++L G + C G W P
Sbjct: 271 DKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSP 307
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 34 SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
+ SPG Y+CE G++L G + C G W P
Sbjct: 721 DKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSP 757
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQ---WMPEGIP 74
+ CR P P + +V + + G+ Y+C +G+ L+G S C +G W E P
Sbjct: 61 KSCRNPPDPVNG-MVHVIKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNE-TP 118
Query: 75 FCVRWCTGL 83
C R GL
Sbjct: 119 ICDRIPCGL 127
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 43 VATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC 80
+ + C+ GF ++G C G+W P+ +P C R C
Sbjct: 1573 IIRFRCQPGFVMVGSHTVQCQTNGRWGPK-LPHCSRVC 1609
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 1 MVNMKC-HNLVLPEVSE---YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLG 56
M ++ C NLV V + + C P P + + + +T G+ Y+C GF L+G
Sbjct: 1393 MFSISCLENLVWSSVEDNCRRKSCGPPPEPFNGMVHINTDTQF-GSTVNYSCNEGFRLIG 1451
Query: 57 PSRRVCDKTGQ 67
C +G
Sbjct: 1452 SPSTTCLVSGN 1462
>pdb|3O8E|B Chain B, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
pdb|3O8E|D Chain D, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
Length = 252
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
+CRFP I + + C++GF L G VCD W P +P C++
Sbjct: 193 KCRFPVVENGKQISGFGKKFYYKATVMFECDKGFYLDGSDTIVCDSNSTWDPP-VPKCLK 251
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 41 GTVATYACERGFELLGP--SRRVCDKTGQWMPEGIPFCVR 78
G Y C++G+ + P + +CD+ W+P C R
Sbjct: 23 GERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYR 62
>pdb|1NTJ|A Chain A, Model Of Rat Crry Determined By Solution Scattering, Curve
Fitting And Homology Modelling
Length = 320
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWM 69
+V ++C P P + IV N + G+ TY C G+ L+G S +C D++ W
Sbjct: 59 DVCIRKQCETPLDP-QNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWD 117
Query: 70 PEGIPFC 76
E P C
Sbjct: 118 AEA-PIC 123
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
P+ E +C P ++ IV N++L S + + C+ GF + G S C +W P
Sbjct: 192 PQCIELNKCTPPHV-ENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEP 250
Query: 71 EGIPFCVR 78
+ +P C +
Sbjct: 251 Q-LPSCFK 257
>pdb|2XRB|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
pdb|2XRD|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
Length = 290
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWM 69
+V ++C P P + IV N + G+ TY C G+ L+G S +C D++ W
Sbjct: 92 DVCIRKQCETPLDP-QNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWD 150
Query: 70 PEGIPFC 76
E P C
Sbjct: 151 AEA-PIC 156
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
P+ E +C P ++ IV N++L S + + C+ GF + G S C +W P
Sbjct: 225 PQCIELNKCTPPHV-ENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEP 283
Query: 71 EGIPFCV 77
+ +P C
Sbjct: 284 Q-LPSCA 289
>pdb|3ERB|A Chain A, The Crystal Structure Of C2b, A Fragment Of Complement
Component C2 Produced During C3-Convertase Formation
Length = 223
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 23 PGAPAHSSIVFSNETLS----PGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
P P + +I TLS PG++ TY+C +G P+ R+C +GQW G
Sbjct: 2 PSCPQNVNISGGTFTLSHGWAPGSLLTYSCPQGL-YPSPASRLCKSSGQWQTPG 54
>pdb|1NTL|A Chain A, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1NTL|B Chain B, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
Length = 551
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIP 74
++C+ P P + +V + + G+ Y C +G+ L+G S VC D++ W E P
Sbjct: 62 KQCKTPSDP-ENGLVHVHTGIEFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEA-P 119
Query: 75 FC 76
C
Sbjct: 120 IC 121
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 GTVATYACERGFELLGPSRRVCDKTGQWMP 70
G T CE G+ L G S+ C G W P
Sbjct: 282 GENVTLECEDGYTLEGSSQSQCQSDGSWNP 311
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
P+ E +C P ++ ++ N +L S + + C GF + G S C +W P
Sbjct: 190 PQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLNKWEP 249
Query: 71 EGIPFCVR 78
E +P C +
Sbjct: 250 E-LPSCFK 256
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 4 MKCH--NLVLPEVSEYEECRFPGAPAHSSIVFSNET------LSPGTVATYACERGFELL 55
++CH N +P V + F G P N T SPG Y+C++G+ L+
Sbjct: 808 IRCHTDNTWVPGVPTCIKKAFIGCPPPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLV 867
Query: 56 GPSRRVCDKTGQW 68
G + +C G W
Sbjct: 868 GEALLLCTHEGTW 880
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 37 TLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
+++PG TY+CE G+ L+G C +G+W
Sbjct: 152 SIAPGLSVTYSCESGYLLVGEKIINCLSSGKW 183
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 38 LSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC-VRWCTGLGWE 86
PGT Y+C G+ L+G C G W P +P C V C G +
Sbjct: 409 FDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPP-VPQCKVAACEATGRQ 457
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
++Y C P P I S G T+AC+ F + G C W P +P
Sbjct: 66 NKYSSCPEPIVPGGYKIRGSTPYRH-GDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLP 124
Query: 75 FCV 77
CV
Sbjct: 125 TCV 127
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 33 FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
F N+T+ T+ C GF L G S+ C W PE IP C +
Sbjct: 601 FYNDTV------TFKCYSGFTLKGSSQIRCKADNTWDPE-IPVCEK 639
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 41 GTVATYACERGFELLGPSRRVCDKTGQWMP 70
G V T CE G+ L G + C QW P
Sbjct: 914 GAVVTLECEDGYMLEGSPQSQCQSDHQWNP 943
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 46 YACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC 80
+AC GF L G + C+ G W P P C + C
Sbjct: 357 FACMFGFTLKGSKQIRCNAQGTWEPSA-PVCEKEC 390
>pdb|1QP1|A Chain A, Kappa Variable Light Chain
pdb|1QP1|B Chain B, Kappa Variable Light Chain
pdb|1QP1|C Chain C, Kappa Variable Light Chain
Length = 107
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACERGFEL 54
K NL++ + S E RF G+ + + F+ +L P +ATY C++ +L
Sbjct: 42 KAPNLLIYDASTLETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQYDDL 94
>pdb|1BRE|A Chain A, Immunoglobulin Light Chain Protein
pdb|1BRE|B Chain B, Immunoglobulin Light Chain Protein
pdb|1BRE|C Chain C, Immunoglobulin Light Chain Protein
pdb|1BRE|D Chain D, Immunoglobulin Light Chain Protein
pdb|1BRE|E Chain E, Immunoglobulin Light Chain Protein
pdb|1BRE|F Chain F, Immunoglobulin Light Chain Protein
pdb|1B0W|A Chain A, Structural Comparison Of Amyloidogenic Light Chain Dimer
In Two Crystal Forms With Nonamyloidogenic Counterparts
pdb|1B0W|B Chain B, Structural Comparison Of Amyloidogenic Light Chain Dimer
In Two Crystal Forms With Nonamyloidogenic Counterparts
pdb|1B0W|C Chain C, Structural Comparison Of Amyloidogenic Light Chain Dimer
In Two Crystal Forms With Nonamyloidogenic Counterparts
Length = 108
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACERGFEL 54
K NL++ + S E RF G+ + + F+ +L P +ATY C++ +L
Sbjct: 42 KAPNLLIYDASTLETGVPSRFSGSGSGTEYTFTISSLQPEDIATYYCQQYDDL 94
>pdb|2A55|A Chain A, Solution Structure Of The Two N-Terminal Ccp Modules Of
C4b- Binding Protein (C4bp) Alpha-Chain
Length = 133
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 17 YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCD 63
Y+ CR PG + + + LS G+ ++C GF L+G + C+
Sbjct: 63 YKRCRHPGELRNGQVEIKTD-LSFGSQIEFSCSEGFFLIGSTTSRCE 108
>pdb|3SQO|L Chain L, Pcsk9 J16 Fab Complex
Length = 214
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFEL 54
RF G+ + + F+ +L P +ATY C++ + L
Sbjct: 60 SRFSGSGSGTDFTFTISSLQPEDIATYYCQQRYSL 94
>pdb|1G40|A Chain A, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G40|B Chain B, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G44|A Chain A, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|B Chain B, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|C Chain C, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1RID|A Chain A, Vaccinia Complement Protein In Complex With Heparin
pdb|1RID|B Chain B, Vaccinia Complement Protein In Complex With Heparin
pdb|1Y8E|A Chain A, Vcp:suramin Complex
pdb|1Y8E|B Chain B, Vcp:suramin Complex
Length = 244
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 14 VSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
+ E +C+ P + ++ + + G+V TY+C G+ L+G S +C G+W
Sbjct: 123 ICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEW 176
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 41 GTVATYACERGFELLGPSRRVCD--KTGQ--WMPEGIPFC 76
G+ TY+C G+ L+G S+ C+ TG W PE P C
Sbjct: 86 GSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEA-PIC 124
>pdb|1E5G|A Chain A, Solution Structure Of Central Cp Module Pair Of A Pox
Virus Complement Inhibitor
Length = 120
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 14 VSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
+ E +C+ P + ++ + + G+V TY+C G+ L+G S +C G+W
Sbjct: 59 ICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEW 112
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 41 GTVATYACERGFELLGPSRRVCD--KTGQ--WMPEGIPFC 76
G+ TY+C G+ L+G S+ C+ TG W PE P C
Sbjct: 22 GSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEA-PIC 60
>pdb|3OED|C Chain C, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
pdb|3OED|D Chain D, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
Length = 135
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
++Y C P P I S G T+AC+ F + G C W P +P
Sbjct: 68 NKYSSCPEPIVPGGYKIRGSTPYRH-GDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLP 126
Query: 75 FCV 77
CV
Sbjct: 127 TCV 129
>pdb|2QFG|A Chain A, Solution Structure Of The N-Terminal Scr-15 FRAGMENT OF
Complement Factor H
Length = 312
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 16 EYEECRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
E+E+C ++ I+ +S++T GT A Y C G+ LG VC K G+W+
Sbjct: 1 EFEDCNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRK-GEWV 56
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 20 CRFPG-APAHSSIVFSNETLSPGTVATYACERGFELLGP-SRRVCDKTGQWMPEGIPFC 76
C PG P + + G A Y C G++LLG + R CD G W + IP C
Sbjct: 69 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDG-WTND-IPIC 125
>pdb|1LY2|A Chain A, Crystal Structure Of Unliganded Human Cd21 Scr1-Scr2
(Complement Receptor Type 2)
Length = 130
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
++Y C P P I S G T+AC+ F + G C W P +P
Sbjct: 67 NKYSSCPEPIVPGGYKIRGSTP-YRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLP 125
Query: 75 FCV 77
CV
Sbjct: 126 TCV 128
>pdb|1GHQ|B Chain B, Cr2-C3d Complex Structure
pdb|1GHQ|C Chain C, Cr2-C3d Complex Structure
Length = 134
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
++Y C P P I S G T+AC+ F + G C W P +P
Sbjct: 67 NKYSSCPEPIVPGGYKIRGSTPYRH-GDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLP 125
Query: 75 FCV 77
CV
Sbjct: 126 TCV 128
>pdb|1W2R|A Chain A, Solution Structure Of Cr2 Scr 1-2 By X-Ray Scattering
pdb|1W2S|B Chain B, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d
By X-Ray Scattering
Length = 142
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
++Y C P P I S G T+AC+ F + G C W P +P
Sbjct: 70 NKYSSCPEPIVPGGYKIRGSTP-YRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLP 128
Query: 75 FCV 77
CV
Sbjct: 129 TCV 131
>pdb|4B2R|A Chain A, Solution Structure Of Ccp Modules 10-11 Of Complement
Factor H
Length = 126
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
E + EC P H + G V ++C+ GF ++GP+ C G +
Sbjct: 1 EAAGERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFG--LSPD 58
Query: 73 IPFCVRWCTGLG 84
+P C G
Sbjct: 59 LPICKEQVQSCG 70
>pdb|2ATY|A Chain A, Complement Receptor Chimaeric Conjugate Cr2-Ig
pdb|2ATY|B Chain B, Complement Receptor Chimaeric Conjugate Cr2-Ig
Length = 376
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
++Y C P P I S G T+AC+ F + G C W P +P
Sbjct: 67 NKYSSCPEPIVPGGYKIRGSTPYRH-GDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLP 125
Query: 75 FCV 77
CV
Sbjct: 126 TCV 128
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137
Mm Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250
Mm Nacl Buffer
Length = 1213
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 33 FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
+S++T GT A Y C G+ LG VC K G+W+
Sbjct: 19 WSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRK-GEWV 54
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
EC P H + G V ++C+ GF ++GP+ C G + +P C
Sbjct: 550 ECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFG--LSPDLPIC 605
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 20 CRFPG-APAHSSIVFSNETLSPGTVATYACERGFELLGP-SRRVCDKTGQWMPEGIPFC 76
C PG P + + G A Y C G++LLG + R CD G W + IP C
Sbjct: 67 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDG-WTND-IPIC 123
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC 62
C+ P +H + +++ G TY C GF + GP+ C
Sbjct: 913 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC 955
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 33 FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
+S++T GT A Y C G+ LG VC K G+W+
Sbjct: 19 WSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRK-GEWV 54
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
EC P H + G V ++C+ GF ++GP+ C G + +P C
Sbjct: 550 ECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFG--LSPDLPIC 605
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 20 CRFPG-APAHSSIVFSNETLSPGTVATYACERGFELLGP-SRRVCDKTGQWMPEGIPFC 76
C PG P + + G A Y C G++LLG + R CD G W + IP C
Sbjct: 67 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDG-WTND-IPIC 123
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC 62
C+ P +H + +++ G TY C GF + GP+ C
Sbjct: 913 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC 955
>pdb|2RLQ|A Chain A, Nmr Structure Of Ccp Modules 2-3 Of Complement Factor H
Length = 129
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 20 CRFPG-APAHSSIVFSNETLSPGTVATYACERGFELLGP-SRRVCDKTGQWMPEGIPFC 76
C PG P + + G A Y C G++LLG + R CD G W + IP C
Sbjct: 8 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDG-WTND-IPIC 64
>pdb|2Q20|A Chain A, Structure Of The Germline Vk1 O18O8 LIGHT CHAIN VARIABLE
Domain Homodimer
pdb|2Q20|B Chain B, Structure Of The Germline Vk1 O18O8 LIGHT CHAIN VARIABLE
Domain Homodimer
Length = 109
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K L++ + S E RF G+ + + F+ +L P +ATY C++
Sbjct: 44 KAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQ 92
>pdb|3CDC|A Chain A, Ki O18O8 N34IY87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE
Domain
pdb|3CDC|B Chain B, Ki O18O8 N34IY87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE
Domain
Length = 109
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K L++ + S E RF G+ + + F+ +L P +ATY C++
Sbjct: 44 KAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYHCQQ 92
>pdb|3DVI|A Chain A, Crystal Structure Of Kappa 1 Amyloidogenic Light Chain
Variable Domain
Length = 109
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACERGFEL----LGP 57
K L++ + S E RF G+ + + F+ +L P +ATY C++ L GP
Sbjct: 43 KAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPPYTFGP 102
Query: 58 SRRV 61
++
Sbjct: 103 GTKL 106
>pdb|3U79|A Chain A, Al-103 Y32f Y96f
pdb|3U79|B Chain B, Al-103 Y32f Y96f
pdb|3U79|C Chain C, Al-103 Y32f Y96f
pdb|3U79|D Chain D, Al-103 Y32f Y96f
pdb|3U79|E Chain E, Al-103 Y32f Y96f
pdb|3U79|F Chain F, Al-103 Y32f Y96f
pdb|3U79|G Chain G, Al-103 Y32f Y96f
pdb|3U79|H Chain H, Al-103 Y32f Y96f
Length = 111
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACERGFEL----LGP 57
K L++ + S E RF G+ + + F+ +L P +ATY C++ L GP
Sbjct: 44 KAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYHNLPPFTFGP 103
Query: 58 SRRV 61
++
Sbjct: 104 GTKL 107
>pdb|2KQM|A Chain A, Solution Structure Of The Ki O18O8 Y87H IMMUNOGLOBULIN
LIGH Variable Domain
pdb|2KQM|B Chain B, Solution Structure Of The Ki O18O8 Y87H IMMUNOGLOBULIN
LIGH Variable Domain
Length = 110
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K L++ + S E RF G+ + + F+ +L P +ATY C++
Sbjct: 44 KAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYHCQQ 92
>pdb|3CDF|A Chain A, Ki O18O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN
pdb|3CDF|B Chain B, Ki O18O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN
pdb|3CDF|C Chain C, Ki O18O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN
pdb|3CDF|D Chain D, Ki O18O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN
pdb|3CDF|E Chain E, Ki O18O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN
pdb|3CDF|F Chain F, Ki O18O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN
Length = 109
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K L++ + S E RF G+ + + F+ +L P +ATY C++
Sbjct: 44 KAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYHCQQ 92
>pdb|1VVC|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, Minimized Average Structure
pdb|1VVD|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, 21 Structures
pdb|1VVE|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, 21 Structures
Length = 118
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
+C+ P + ++ + + G+V TY+C G+ L+G S +C G+W
Sbjct: 2 KCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEW 50
>pdb|2RLP|A Chain A, Nmr Structure Of Ccp Modules 1-2 Of Complement Factor H
Length = 129
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 20 CRFPG-APAHSSIVFSNETLSPGTVATYACERGFELLGP-SRRVCDKTGQWMPEGIPFC 76
C PG P + + G A Y C G++LLG + R CD G W + IP C
Sbjct: 72 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDG-WTND-IPIC 128
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 33 FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
+S++T GT A Y C G+ LG VC K G+W+
Sbjct: 24 WSDQTYPEGTQAIYKCRPGYRSLGNVIMVCRK-GEWV 59
>pdb|2WII|C Chain C, Complement C3b In Complex With Factor H Domains 1-4
Length = 277
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 33 FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
+S++T GT A Y C G+ LG VC K G+W+
Sbjct: 24 WSDQTYPEGTQAIYKCRPGYRSLGNIIMVCRK-GEWV 59
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 20 CRFPG-APAHSSIVFSNETLSPGTVATYACERGFELLGP-SRRVCDKTGQWMPEGIPFC 76
C PG P + + G A Y C G++LLG + R CD G W + IP C
Sbjct: 72 CGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDG-WTND-IPIC 128
>pdb|1REI|A Chain A, The Molecular Structure Of A Dimer Composed Of The
Variable Portions Of The Bence-Jones Protein Rei
Refined At 2.0 Angstroms Resolution
pdb|1REI|B Chain B, The Molecular Structure Of A Dimer Composed Of The
Variable Portions Of The Bence-Jones Protein Rei
Refined At 2.0 Angstroms Resolution
Length = 107
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K L++ E S + RF G+ + + F+ +L P +ATY C++
Sbjct: 42 KAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQ 90
>pdb|1BWW|A Chain A, Bence-Jones Immunoglobulin Rei Variable Portion, T39k
Mutant
pdb|1BWW|B Chain B, Bence-Jones Immunoglobulin Rei Variable Portion, T39k
Mutant
Length = 109
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K L++ E S + RF G+ + + F+ +L P +ATY C++
Sbjct: 44 KAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQ 92
>pdb|4HG4|K Chain K, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|M Chain M, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|O Chain O, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Q Chain Q, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|S Chain S, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|U Chain U, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|W Chain W, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Y Chain Y, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|ZZ Chain z, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 214
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K NL++ + S + RF G+ + + F+ +L P +ATY C++
Sbjct: 42 KAPNLLIYDASNVKTGVPSRFRGSGSGTDFTFTISSLQPEDIATYYCQQ 90
>pdb|2EHF|A Chain A, Solution Structure Of The Third Sushi Domain From Human
Cub And Sushi Domain-Containing Protein 1
Length = 73
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
E C PG PA+ S + G T+ C FEL+G C + QW
Sbjct: 10 EKGGCGDPGIPAYGKRTGS--SFLHGDTLTFECPAAFELVGERVITCQQNNQW 60
>pdb|1AR2|A Chain A, Disulfide-Free Immunoglobulin Fragment
Length = 109
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K L++ E S + RF G+ + + F+ +L P +ATY C++
Sbjct: 44 KAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQ 92
>pdb|1IGM|L Chain L, Three Dimensional Structure Of An Fv From A Human Igm
Immunoglobulin
Length = 115
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFEL---LGPSRRV 61
RF G+ + + F+ +L P +ATY C++ L GP +V
Sbjct: 60 SRFSGSGSGTDFTFTISSLQPEDIATYYCQQYQNLPLTFGPGTKV 104
>pdb|3NTC|L Chain L, Crystal Structure Of Kd-247 Fab, An Anti-V3 Antibody
That Inhibits Hiv-1 Entry
Length = 219
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 21 RFPGAPAHSSIVFSNETLSPGTVATYACERGF 52
RF G+ + + F+ +L P +ATY C+ +
Sbjct: 67 RFSGSGSGTDFTFTISSLQPEDIATYYCQNDY 98
>pdb|1GKG|A Chain A, Structure Determination And Rational Mutagenesis Reveal
Binding Surface Of Immune Adherence Receptor, Cr1
(Cd35)
Length = 136
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPE 71
+E + C+ P P + +V + G+ TY+C G L+G S C T W +
Sbjct: 2 AEAKSCKTPPDPVNG-MVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK 60
Query: 72 GIPFCVRWCTGL 83
P C R GL
Sbjct: 61 P-PICQRIPCGL 71
>pdb|1CKL|A Chain A, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|B Chain B, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|C Chain C, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|D Chain D, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|E Chain E, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|F Chain F, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|2O39|C Chain C, Human Adenovirus Type 11 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|2O39|D Chain D, Human Adenovirus Type 11 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|3INB|C Chain C, Structure Of The Measles Virus Hemagglutinin Bound To
The Cd46 Receptor
pdb|3INB|D Chain D, Structure Of The Measles Virus Hemagglutinin Bound To
The Cd46 Receptor
pdb|3L89|M Chain M, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|N Chain N, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|O Chain O, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|P Chain P, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|Q Chain Q, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|R Chain R, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|S Chain S, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|T Chain T, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|U Chain U, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|V Chain V, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|W Chain W, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|X Chain X, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
Length = 126
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 41 GTVATYACERGFELLGP--SRRVCDKTGQWMPEGIPFCVR 78
G Y C++G+ + P + +CD+ W+P C R
Sbjct: 23 GERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYR 62
>pdb|1HCC|A Chain A, Three-Dimensional Structure Of A Complement Control
Protein Module In Solution
Length = 59
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC 62
C+ P +H + +++ G TY C GF + GP+ C
Sbjct: 5 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC 47
>pdb|1WTL|A Chain A, Comparison Of Crystal Structures Of Two Homologous
Proteins: Structural Origin Of Altered Domain
Interactions In Immunoglobulin Light Chain Dimers
pdb|1WTL|B Chain B, Comparison Of Crystal Structures Of Two Homologous
Proteins: Structural Origin Of Altered Domain
Interactions In Immunoglobulin Light Chain Dimers
Length = 108
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
RF G+ + + F+ +L P +ATY C++
Sbjct: 60 SRFSGSGSGTDFTFTISSLQPEDIATYYCQQ 90
>pdb|3DVF|A Chain A, Structure Of Amyloidogenic Kappa 1 Bence Jones Protein
Length = 107
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACE 49
K L++ + S E RF G + + F+ +L P +ATY C+
Sbjct: 42 KAPKLLIYDASNLETGVPSRFSGRGSGTHFTFTISSLQPADIATYYCQ 89
>pdb|4F9L|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
Length = 259
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERG 51
RF G+ + + + +L P +ATY C++G
Sbjct: 60 SRFSGSGSATGFTLTISSLQPEDIATYYCQQG 91
>pdb|1PPQ|A Chain A, Nmr Structure Of 16th Module Of Immune Adherence
Receptor, Cr1 (Cd35)
Length = 68
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPE 71
+E + C+ P P + +V + G+ TY+C G L+G S C T W +
Sbjct: 2 AEAKSCKTPPDPV-NGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK 60
Query: 72 GIPFCVR 78
P C R
Sbjct: 61 P-PICQR 66
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT
OF Complement Factor H
Length = 333
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC 62
C+ P +H + +++ G TY C GF + GP+ C
Sbjct: 10 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC 52
>pdb|3IDX|L Chain L, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C222
pdb|3IDY|L Chain L, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
pdb|3IDY|C Chain C, Crystal Structure Of Hiv-Gp120 Core In Complex With
Cd4-Binding Site Antibody B13, Space Group C2221
Length = 215
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 5 KCHNLVLPEVSEYEE---CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
K L++ + S E RF G+ + F+ +L P VATY C++
Sbjct: 42 KAPKLLIYDASNSETGVPSRFSGSGSGRDFTFTISSLQPEDVATYYCQQ 90
>pdb|1HFH|A Chain A, Solution Structure Of A Pair Of Complement Modules By
Nuclear Magnetic Resonance
Length = 120
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC 62
C+ P +H + +++ G TY C GF + GP+ C
Sbjct: 66 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC 108
>pdb|1S3K|L Chain L, Crystal Structure Of A Humanized Fab (Hu3s193) In
Complex With The Lewis Y Tetrasaccharide
pdb|3EYV|L Chain L, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
pdb|3EYV|A Chain A, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
Length = 219
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 21 RFPGAPAHSSIVFSNETLSPGTVATYACERG 51
RF G+ + + F+ +L P +ATY C +G
Sbjct: 66 RFSGSGSGTDFTFTISSLQPEDIATYYCFQG 96
>pdb|1SRZ|A Chain A, Solution Structure Of The Second Complement Control
Protein (Ccp) Module Of The Gaba(B)r1a Receptor,
Pro-119 Trans Conformer
pdb|1SS2|A Chain A, Solution Structure Of The Second Complement Control
Protein (Ccp) Module Of The Gaba(B)r1a Receptor,
Pro-119 Cis Conformer
Length = 68
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 41 GTVATYACERGFELLGPSRRVCDKTGQW 68
G + C+ F L+G SR VC + GQW
Sbjct: 32 GARVEFRCDPDFHLVGSSRSVCSQ-GQW 58
>pdb|1YJD|L Chain L, Crystal Structure Of Human Cd28 In Complex With The Fab
Fragment Of A Mitogenic Antibody (5.11a1)
Length = 212
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERG 51
RF G+ + + + +L P +ATY C++G
Sbjct: 60 SRFSGSGSGTGFTLTISSLQPEDIATYYCQQG 91
>pdb|1IGT|A Chain A, Structure Of Immunoglobulin
pdb|1IGT|C Chain C, Structure Of Immunoglobulin
Length = 214
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 21 RFPGAPAHSSIVFSNETLSPGTVATYACERG 51
RF G+ + + + +L P +ATY C++G
Sbjct: 61 RFSGSGSGTGFTLTISSLQPEDIATYYCQQG 91
>pdb|1RJL|A Chain A, Structure Of The Complex Between Ospb-Ct And
Bactericidal Fab-H6831
Length = 212
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERG 51
RF G+ + + + +L P +ATY C++G
Sbjct: 60 SRFSGSGSGTGFTLTISSLQPEDIATYYCQQG 91
>pdb|3KR3|L Chain L, Crystal Structure Of Igf-Ii Antibody Complex
Length = 215
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 21 RFPGAPAHSSIVFSNETLSPGTVATYACERGF 52
RF G+ + + + +L P ATY+C++ +
Sbjct: 62 RFSGSASGTDFTLTINSLQPEDFATYSCQQSY 93
>pdb|3C08|L Chain L, Crystal Structure The Fab Fragment Of MatuzumabEMD72000
(FAB72000)
pdb|3C09|L Chain L, Crystal Structure The Fab Fragment Of Matuzumab
(Fab72000) In Complex With Domain Iii Of The
Extracellular Region Of Egfr
pdb|3C09|B Chain B, Crystal Structure The Fab Fragment Of Matuzumab
(Fab72000) In Complex With Domain Iii Of The
Extracellular Region Of Egfr
Length = 212
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
RF G+ + + F+ +L P +ATY C++
Sbjct: 59 SRFSGSGSGTDYTFTISSLQPEDIATYYCQQ 89
>pdb|3CDY|A Chain A, Al-09 H87y, Immunoglobulin Light Chain Variable Domain
pdb|3CDY|B Chain B, Al-09 H87y, Immunoglobulin Light Chain Variable Domain
Length = 109
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
RF G+ + + F+ +L P +ATY C++
Sbjct: 62 SRFSGSGSGTEFTFTISSLQPEDLATYYCQQ 92
>pdb|2KQN|A Chain A, Solution Structure Of The Al-09 H87y Immunoglobulin
Light Ch Variable Domain
pdb|2KQN|B Chain B, Solution Structure Of The Al-09 H87y Immunoglobulin
Light Ch Variable Domain
Length = 110
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
RF G+ + + F+ +L P +ATY C++
Sbjct: 62 SRFSGSGSGTEFTFTISSLQPEDLATYYCQQ 92
>pdb|3U7A|A Chain A, Al-09 Y32f Y96f
Length = 110
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
RF G+ + + F+ +L P +ATY C++
Sbjct: 62 SRFSGSGSGTEFTFTISSLQPEDLATYHCQQ 92
>pdb|2Q1E|A Chain A, Altered Dimer Interface Decreases Stability In An
Amyloidogenic Kappa1 Bence Jones Protein.
pdb|2Q1E|B Chain B, Altered Dimer Interface Decreases Stability In An
Amyloidogenic Kappa1 Bence Jones Protein.
pdb|2Q1E|C Chain C, Altered Dimer Interface Decreases Stability In An
Amyloidogenic Kappa1 Bence Jones Protein.
pdb|2Q1E|D Chain D, Altered Dimer Interface Decreases Stability In An
Amyloidogenic Kappa1 Bence Jones Protein
Length = 109
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACER 50
RF G+ + + F+ +L P +ATY C++
Sbjct: 62 SRFSGSGSGTEFTFTISSLQPEDLATYHCQQ 92
>pdb|2XRA|L Chain L, Crystal Structure Of The Hk20 Fab In Complex With A Gp41
Mimetic 5-Helix
Length = 215
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 21 RFPGAPAHSSIVFSNETLSPGTVATYACERGFEL 54
RF G+ + + F+ +L P +ATY C+ +L
Sbjct: 61 RFSGSGSGTDFTFTISSLQPEDLATYYCQHYDDL 94
>pdb|1GKN|A Chain A, Structure Determination And Rational Mutagenesis Reveal
Binding Surface Of Immune Adherence Receptor, Cr1 (Cd35)
Length = 128
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWM 69
+V + + C+ P P + +V + G+ TY+C G L+G S C T W
Sbjct: 60 DVCKRKSCKTPPDPV-NGMVHVITDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWS 118
Query: 70 PEGIPFCVR 78
+ P C R
Sbjct: 119 TKP-PICQR 126
>pdb|1BVK|A Chain A, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVK|D Chain D, Humanized Anti-Lysozyme Fv Complexed With Lysozyme
pdb|1BVL|B Chain B, Humanized Anti-Lysozyme Fv
pdb|1BVL|D Chain D, Humanized Anti-Lysozyme Fv
Length = 108
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACE 49
RF G+ + + F+ +L P +ATY C+
Sbjct: 60 SRFSGSGSGTDYTFTISSLQPEDIATYYCQ 89
>pdb|3GOV|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|A Chain A, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|C Chain C, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 155
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 19 ECRFPGAPAHSSIVFS--NETLSPGTVATYAC-ERGFELLGPSRRV--CDKTGQWMPE-- 71
+CR PG H I FS N + + Y+C E +++L + + C G WM +
Sbjct: 73 DCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVL 132
Query: 72 --GIPFCVRWC 80
+P C+ C
Sbjct: 133 GRSLPTCLPVC 143
>pdb|2YRA|A Chain A, Solution Structure Of The Zinc Finger Domains (1-87)
From Human F-Box Only Protein
Length = 74
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 34 SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
S+ L G TY C+ G++++G C W + PFC +
Sbjct: 22 SHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSD-PPFCEK 65
>pdb|1BEY|L Chain L, Antibody To Campath-1h Humanized Fab
Length = 214
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 21 RFPGAPAHSSIVFSNETLSPGTVATYAC 48
RF G+ + + F+ +L P +ATY C
Sbjct: 61 RFSGSGSGTDFTFTISSLQPEDIATYYC 88
>pdb|3GKW|L Chain L, Crystal Structure Of The Fab Fragment Of Nimotuzumab. An
Anti- Epidermal Growth Factor Receptor Antibody
Length = 219
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 21 RFPGAPAHSSIVFSNETLSPGTVATYAC 48
RF G+ + + F+ +L P +ATY C
Sbjct: 66 RFSGSGSGTDFTFTISSLQPEDIATYYC 93
>pdb|1AD0|A Chain A, Fab Fragment Of Engineered Human Monoclonal Antibody
A5b7
pdb|1AD0|C Chain C, Fab Fragment Of Engineered Human Monoclonal Antibody
A5b7
Length = 213
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 21 RFPGAPAHSSIVFSNETLSPGTVATYACER 50
RF G+ + + F+ +L P +ATY C+
Sbjct: 60 RFSGSGSGTDYTFTISSLQPEDIATYYCQH 89
>pdb|1CE1|L Chain L, 1.9a Structure Of The Therapeutic Antibody Campath-1h
Fab In Complex With A Synthetic Peptide Antigen
Length = 211
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYAC 48
RF G+ + + F+ +L P +ATY C
Sbjct: 60 SRFSGSGSGTDFTFTISSLQPEDIATYYC 88
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 19 ECRFPGAPAHSSIVFS--NETLSPGTVATYAC-ERGFELLGPSRRV--CDKTGQWMPE-- 71
+CR PG H I FS N + + Y+C E +++L + + C G WM +
Sbjct: 73 DCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVL 132
Query: 72 --GIPFCVRWC 80
+P C+ C
Sbjct: 133 GRSLPTCLPVC 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,961,683
Number of Sequences: 62578
Number of extensions: 104977
Number of successful extensions: 565
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 168
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)