Query psy6641
Match_columns 87
No_of_seqs 169 out of 1059
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 23:25:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02817 EEV Host range protei 99.8 2.9E-18 6.2E-23 106.0 8.5 76 3-80 68-149 (225)
2 PHA02831 EEV host range protei 99.8 1.6E-18 3.5E-23 109.5 6.8 75 3-79 121-198 (268)
3 PHA02639 EEV host range protei 99.7 3E-17 6.5E-22 105.2 8.3 76 3-80 128-209 (295)
4 PHA02831 EEV host range protei 99.7 4E-17 8.7E-22 103.2 8.3 75 2-78 57-138 (268)
5 cd00033 CCP Complement control 99.7 6.6E-17 1.4E-21 80.4 6.4 57 20-77 1-57 (57)
6 PHA02927 secreted complement-b 99.7 1.1E-16 2.4E-21 101.4 7.8 73 3-78 187-263 (263)
7 smart00032 CCP Domain abundant 99.7 1.1E-16 2.4E-21 79.4 6.2 56 20-76 1-57 (57)
8 PHA02639 EEV host range protei 99.7 3.5E-16 7.7E-21 100.3 8.3 75 3-78 61-146 (295)
9 PF00084 Sushi: Sushi domain ( 99.7 5.3E-17 1.2E-21 80.6 3.6 56 20-76 1-56 (56)
10 PHA02927 secreted complement-b 99.6 2.5E-15 5.4E-20 95.3 8.6 73 3-78 123-203 (263)
11 PHA02817 EEV Host range protei 99.6 7.7E-15 1.7E-19 90.9 6.9 62 16-78 20-86 (225)
12 PHA02954 EEV membrane glycopro 99.5 3.7E-14 8.1E-19 91.7 7.7 72 3-80 168-241 (317)
13 PHA02954 EEV membrane glycopro 99.5 1.5E-13 3.3E-18 88.9 6.9 73 4-80 108-186 (317)
14 smart00008 HormR Domain presen 94.4 0.054 1.2E-06 27.9 2.5 33 38-70 18-53 (70)
15 PF02793 HRM: Hormone receptor 92.1 0.073 1.6E-06 26.9 0.9 33 38-70 17-54 (66)
16 PF12662 cEGF: Complement Clr- 84.3 0.74 1.6E-05 18.8 1.1 17 46-63 4-20 (24)
17 KOG4564|consensus 82.4 1.7 3.7E-05 30.5 2.9 36 38-74 77-117 (473)
18 PF03436 DUF281: Domain of unk 71.0 2.1 4.6E-05 21.6 0.7 13 58-70 49-61 (62)
19 PF09014 Sushi_2: Beta-2-glyco 50.5 2.7 5.9E-05 22.6 -1.1 40 36-79 28-68 (85)
20 PF11685 DUF3281: Protein of u 46.4 30 0.00066 22.5 2.9 15 40-54 192-206 (268)
21 PF14670 FXa_inhibition: Coagu 37.8 23 0.0005 15.7 1.1 14 44-57 19-32 (36)
22 PF09064 Tme5_EGF_like: Thromb 37.7 21 0.00045 15.8 0.9 12 45-56 19-30 (34)
23 PRK13792 lysozyme inhibitor; P 37.0 87 0.0019 18.2 4.4 35 19-53 18-56 (127)
24 PF12661 hEGF: Human growth fa 35.0 16 0.00034 12.4 0.2 6 47-52 3-8 (13)
25 PF12946 EGF_MSP1_1: MSP1 EGF 32.6 33 0.00072 15.4 1.2 16 43-58 20-35 (37)
26 PF07191 zinc-ribbons_6: zinc- 31.4 70 0.0015 16.6 2.4 19 41-59 46-64 (70)
27 PF14704 DERM: Dermatopontin 26.4 65 0.0014 19.0 2.0 19 39-57 57-75 (152)
28 PF07645 EGF_CA: Calcium-bindi 21.9 62 0.0013 14.4 1.1 10 46-55 27-36 (42)
29 PF01607 CBM_14: Chitin bindin 20.4 1.1E+02 0.0023 13.7 1.9 29 46-79 19-47 (53)
30 PF13397 DUF4109: Domain of un 20.4 1.8E+02 0.0039 16.3 3.1 19 37-55 20-38 (105)
31 PF02822 Antistasin: Antistasi 20.4 71 0.0015 13.0 1.0 13 44-56 6-18 (26)
No 1
>PHA02817 EEV Host range protein; Provisional
Probab=99.77 E-value=2.9e-18 Score=106.01 Aligned_cols=76 Identities=25% Similarity=0.591 Sum_probs=65.4
Q ss_pred eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEe--cCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641 3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVF--SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76 (87)
Q Consensus 3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~--~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C 76 (87)
.++|+ |+|++..| +.+.|+.|. +.||.+.. ....|.+|++|+|+|++||.|.|+..++|+++|+|+++ .|.|
T Consensus 68 ~i~C~~dG~Ws~~~P~C~~v~C~~P~-i~NG~v~~~~~~~~y~yg~~Vty~C~~Gy~L~G~~~~tC~~~G~WSp~-~P~C 145 (225)
T PHA02817 68 NIICEKDGKWNKEFPVCKIIRCRFPA-LQNGFVNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPK-VPIC 145 (225)
T ss_pred eEEECCCCcCCCCCCeeeeeECCCCC-CcCceeEccccCCceEcCCEEEEEcCCCCEEcCCCceEECCCCeECCC-CCEe
Confidence 57998 89998777 567999875 67998763 34678899999999999999999999999999999997 9999
Q ss_pred eecc
Q psy6641 77 VRWC 80 (87)
Q Consensus 77 ~~~~ 80 (87)
.+..
T Consensus 146 ~~~~ 149 (225)
T PHA02817 146 SRDN 149 (225)
T ss_pred ecCC
Confidence 8754
No 2
>PHA02831 EEV host range protein; Provisional
Probab=99.76 E-value=1.6e-18 Score=109.50 Aligned_cols=75 Identities=28% Similarity=0.674 Sum_probs=66.3
Q ss_pred eeEEc-ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeec
Q psy6641 3 NMKCH-NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79 (87)
Q Consensus 3 ~~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~ 79 (87)
.++|. |.|++..| +.+.|+.|. +.||.+......|.+|++|+|+|++||.|.|+..++|+.+|+|+++ .|.|++.
T Consensus 121 ~~tC~dG~WS~~~P~C~~i~C~~P~-i~NG~i~~~~~~y~~G~~Vty~C~~GY~L~Gss~~tC~~nG~Wsp~-~P~C~~~ 198 (268)
T PHA02831 121 TVKCINKQWVPKYPVCKLIRCKYPA-LQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPG-IPKCVKD 198 (268)
T ss_pred eeEeCCCcCCCCCCeeeEeeCCCCC-CCCCccccCCCceecCCEEEEEcCCCCEECCCccEEECCCCeECCC-CCCccCc
Confidence 57899 99998888 567898874 7799887555779999999999999999999999999999999997 9999874
No 3
>PHA02639 EEV host range protein; Provisional
Probab=99.73 E-value=3e-17 Score=105.25 Aligned_cols=76 Identities=32% Similarity=0.651 Sum_probs=64.5
Q ss_pred eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEe--cCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641 3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVF--SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76 (87)
Q Consensus 3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~--~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C 76 (87)
.++|+ |+|++..| +.+.|+.| .+.||.+.. ....|.+|++|+|+|++||.|.|+..++|+.+|+|+++ +|.|
T Consensus 128 ~~~C~~dG~WS~~~P~C~~i~C~~P-~i~nG~v~~~~~~~~~~yg~~V~fsC~~GY~L~Gs~~~tC~~nG~Ws~~-~P~C 205 (295)
T PHA02639 128 KITCIQDKSWKPDPPICKMINCRFP-ALQNGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFPS-IPTC 205 (295)
T ss_pred eEEECCCCeECCCCCeeeeEEeCCC-CCCCCceEcccCCCceecCCEEEEEcCCCCeEcCCCcEEECCCCeECCC-CCeE
Confidence 57998 89998887 56789977 467887653 23568899999999999999999999999999999998 9999
Q ss_pred eecc
Q psy6641 77 VRWC 80 (87)
Q Consensus 77 ~~~~ 80 (87)
++..
T Consensus 206 ~~~~ 209 (295)
T PHA02639 206 VRNK 209 (295)
T ss_pred eccC
Confidence 8754
No 4
>PHA02831 EEV host range protein; Provisional
Probab=99.72 E-value=4e-17 Score=103.22 Aligned_cols=75 Identities=24% Similarity=0.478 Sum_probs=65.7
Q ss_pred eeeEEc-ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcC----CCCEEcCCCceeeCCCCccCCCCCC
Q psy6641 2 VNMKCH-NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACE----RGFELLGPSRRVCDKTGQWMPEGIP 74 (87)
Q Consensus 2 ~~~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~----~gy~l~G~~~~~C~~~g~Ws~~~~p 74 (87)
+.++|. |+|++.++ +.+.|+.|+.+.||.+...+..|.+|+.|+|+|+ +||.|.|++.++|. +|+|+++ .|
T Consensus 57 ~~itC~dG~WS~~P~C~~~~~C~~Pp~i~NG~i~~~~~~Y~~Gd~VtYsC~~g~~~GY~LvG~s~~tC~-dG~WS~~-~P 134 (268)
T PHA02831 57 VFVTCNNGSWSTKNMCIGKRNCKDPVTILNGYIKNKKDQYSFGDSVTYACKVNKLEKYSIVGNETVKCI-NKQWVPK-YP 134 (268)
T ss_pred eeEEeCCCccCCCCcccccccCcCCCCCCCCEEeccCCceeCCCEEEEECCCCCCCCeeEcCCceeEeC-CCcCCCC-CC
Confidence 457899 99997655 2468999999999999877777999999999999 69999999999996 9999997 99
Q ss_pred eEee
Q psy6641 75 FCVR 78 (87)
Q Consensus 75 ~C~~ 78 (87)
.|++
T Consensus 135 ~C~~ 138 (268)
T PHA02831 135 VCKL 138 (268)
T ss_pred eeeE
Confidence 9985
No 5
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=99.71 E-value=6.6e-17 Score=80.39 Aligned_cols=57 Identities=33% Similarity=0.771 Sum_probs=52.2
Q ss_pred CCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77 (87)
Q Consensus 20 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~ 77 (87)
|+.|+.+.||.+......|.+|++++|.|++||.|.|+..++|+.+|+|+.. .|.|+
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~-~p~C~ 57 (57)
T cd00033 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPP-PPTCE 57 (57)
T ss_pred CcCCCCCCCcEEecCCCcccCCCEEEEECCCCCeEeCCCeeEECCCCeECCC-CcccC
Confidence 7888888899998766789999999999999999999999999999999997 88884
No 6
>PHA02927 secreted complement-binding protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=101.41 Aligned_cols=73 Identities=23% Similarity=0.539 Sum_probs=62.6
Q ss_pred eeEEc-ceecCCCC--CcccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641 3 NMKCH-NLVLPEVS--EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78 (87)
Q Consensus 3 ~~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~ 78 (87)
.++|. |.|+. .| +.+.|+.|. +.||.+... +..|.+|++|+|+|++||.|.|+..++|+.+|+|+++ +|.|.+
T Consensus 187 ~~~C~~G~Ws~-~P~C~~v~C~~P~-i~ng~~~~~~k~~y~~g~~v~y~C~~Gy~l~G~~~~~C~~~g~Ws~~-~P~C~~ 263 (263)
T PHA02927 187 GVLCSGGEWSD-PPTCQIVKCPHPT-ISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPE-LPKCVR 263 (263)
T ss_pred eeEECCCccCC-CCeEeEeECcCCC-CCCCEEecCCCCccccCCEEEEECCCCCeEcCCCCeEECCCCEECCC-CCeecC
Confidence 46899 99997 46 567999875 668887643 4679999999999999999999999999999999997 999964
No 7
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=99.69 E-value=1.1e-16 Score=79.37 Aligned_cols=56 Identities=38% Similarity=0.763 Sum_probs=50.7
Q ss_pred CCCCCCCCCeEEEecC-CCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76 (87)
Q Consensus 20 C~~p~~~~~g~~~~~~-~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C 76 (87)
|+.|+.+.||.+.... ..|.+|++++|.|++||.|.|...++|+.+|+|+.. .|.|
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~~g~~~~~~C~~Gy~l~g~~~~~C~~~g~Ws~~-~p~C 57 (57)
T smart00032 1 CPPPPDIENGTITSSNKGTYSVGDTVTYSCNPGYTLIGSSTITCLEDGTWSPP-APTC 57 (57)
T ss_pred CcCCCCCCCCEEecCCCCeecCCCEEEEEcCCCCEEcCCCeeEECCCCEECCC-CCcC
Confidence 7788889999998764 679999999999999999999999999999999987 7877
No 8
>PHA02639 EEV host range protein; Provisional
Probab=99.67 E-value=3.5e-16 Score=100.33 Aligned_cols=75 Identities=21% Similarity=0.466 Sum_probs=67.0
Q ss_pred eeEEc-----ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCC----CCEEcCCCceeeCCCCccCCC
Q psy6641 3 NMKCH-----NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACER----GFELLGPSRRVCDKTGQWMPE 71 (87)
Q Consensus 3 ~~~C~-----g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~----gy~l~G~~~~~C~~~g~Ws~~ 71 (87)
.++|+ |+|++..| +.+.|+.|+.+.||.+...+..|.+|+.++|+|++ ||.|.|+..++|+.+|+|+++
T Consensus 61 ~~~C~~d~~nG~WS~~~P~C~~~~C~~Pp~~~nG~i~~~~~~y~~G~~V~y~C~~g~~~gY~L~G~~~~~C~~dG~WS~~ 140 (295)
T PHA02639 61 FRTCIKDKNNAIWSNKAPFCMLKECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKPD 140 (295)
T ss_pred eEEEeCCCCCCEECCCCCEEeeccCcCCCCCCCcEEecCCCceECCCEEEEEeCCCCCCceEECCCCeEEECCCCeECCC
Confidence 57896 48998888 56889999999999998766789999999999999 599999999999999999997
Q ss_pred CCCeEee
Q psy6641 72 GIPFCVR 78 (87)
Q Consensus 72 ~~p~C~~ 78 (87)
.|.|++
T Consensus 141 -~P~C~~ 146 (295)
T PHA02639 141 -PPICKM 146 (295)
T ss_pred -CCeeee
Confidence 999985
No 9
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=99.67 E-value=5.3e-17 Score=80.63 Aligned_cols=56 Identities=38% Similarity=0.779 Sum_probs=50.8
Q ss_pred CCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76 (87)
Q Consensus 20 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C 76 (87)
|+.|+.+.|+.+......|.+|++++|+|+.||.+.|...++|+.+|+|+.+ .|.|
T Consensus 1 C~~P~~~~~~~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~-~p~C 56 (56)
T PF00084_consen 1 CPPPPPIPNGSISCTNNPYSYGSTVTFSCNPGYELSGSSTITCQSNGQWSPP-PPTC 56 (56)
T ss_dssp EESESCBTTEEEESSSSSEETTEEEEEEESTTEEEESSSEEEEETTSEESST-TSEE
T ss_pred CcCCCCCCCcEEecCCCCccCCCEEEEcCCCCCEecCCCEEEECCCCEECCC-CCCC
Confidence 6778889999777766889999999999999999999999999999999997 8887
No 10
>PHA02927 secreted complement-binding protein; Provisional
Probab=99.63 E-value=2.5e-15 Score=95.29 Aligned_cols=73 Identities=27% Similarity=0.588 Sum_probs=63.3
Q ss_pred eeEEc-c-----eecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCC
Q psy6641 3 NMKCH-N-----LVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74 (87)
Q Consensus 3 ~~~C~-g-----~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p 74 (87)
.++|+ + +|++..| +.+.|+.|+.+.||.+...+..|.+|+.|+|+|++||.|.|+..++|. +|+|+. +|
T Consensus 123 ~~~C~~~~~g~~~Ws~~~P~C~~~~C~~P~~~~nG~~~~~~~~y~~g~~v~y~C~~Gy~l~G~~~~~C~-~G~Ws~--~P 199 (263)
T PHA02927 123 KSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD--PP 199 (263)
T ss_pred eeEEEeCCCCcceECCCCCccccccCCCCCCCCCcEEcCCcccccCCCEEEEECCCCCEECCCCeeEEC-CCccCC--CC
Confidence 46897 3 6998877 577999999999999876556688999999999999999999999997 899995 68
Q ss_pred eEee
Q psy6641 75 FCVR 78 (87)
Q Consensus 75 ~C~~ 78 (87)
.|++
T Consensus 200 ~C~~ 203 (263)
T PHA02927 200 TCQI 203 (263)
T ss_pred eEeE
Confidence 9985
No 11
>PHA02817 EEV Host range protein; Provisional
Probab=99.58 E-value=7.7e-15 Score=90.88 Aligned_cols=62 Identities=24% Similarity=0.641 Sum_probs=56.0
Q ss_pred CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCC-----CEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641 16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERG-----FELLGPSRRVCDKTGQWMPEGIPFCVR 78 (87)
Q Consensus 16 ~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~g-----y~l~G~~~~~C~~~g~Ws~~~~p~C~~ 78 (87)
+.+.|+.|+.+.||.+......|.+|+.|+|+|++| |.|.|+..++|+.+|+|+++ +|.|++
T Consensus 20 ~~~~C~~PP~i~NG~i~~~~~~Y~~Gd~Vty~C~~G~~~~gY~L~G~~~i~C~~dG~Ws~~-~P~C~~ 86 (225)
T PHA02817 20 DLNKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKE-FPVCKI 86 (225)
T ss_pred cCcCCCCCCCCCCCEEecCCCceeCCCEEEEEeCCCCCCCCEEECCCCeEEECCCCcCCCC-CCeeee
Confidence 467899999999999876667899999999999997 89999999999999999987 899984
No 12
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=99.54 E-value=3.7e-14 Score=91.70 Aligned_cols=72 Identities=31% Similarity=0.619 Sum_probs=59.5
Q ss_pred eeEEc-ceecCCCC-CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeecc
Q psy6641 3 NMKCH-NLVLPEVS-EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC 80 (87)
Q Consensus 3 ~~~C~-g~W~~~~~-~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~~ 80 (87)
.++|+ ++|++ .| ....|+.| .+.||.+.. ..|.+|++|+|+|++||.|.|++.++|. +|+|+++ .|.|.+..
T Consensus 168 ~i~C~~~~Ws~-~P~C~~~C~~P-~i~NG~~sg--~~y~~Gd~Vtf~C~~Gy~L~Gs~~itC~-~g~Ws~~-~P~C~~~~ 241 (317)
T PHA02954 168 YISCTANSWNV-IPSCQQKCDIP-SLSNGLISG--STFSIGGVIHLSCKSGFTLTGSPSSTCI-DGKWNPV-LPICVRSN 241 (317)
T ss_pred eeEECCCcCCC-CCccccccCCC-CCCCCeEcC--CCcccCCEEEEECCCCCeECCCcceEEC-CCeEeCC-CCceeCCC
Confidence 57899 89974 45 33479864 678998754 4688999999999999999999999997 9999997 89998753
No 13
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=99.48 E-value=1.5e-13 Score=88.87 Aligned_cols=73 Identities=29% Similarity=0.525 Sum_probs=58.9
Q ss_pred eEEc-----ceecCCCC-CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641 4 MKCH-----NLVLPEVS-EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77 (87)
Q Consensus 4 ~~C~-----g~W~~~~~-~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~ 77 (87)
++|. ++|++... +.+.|++| .+.||.+......|.+|+.|+|+|++||.|.|++.++|+++ .|+ + .|.|+
T Consensus 108 ~~C~~~g~~~~WS~~ptC~~i~C~pP-~i~NG~~~~~~~~Y~yGd~VtysC~~GY~L~Gs~~i~C~~~-~Ws-~-~P~C~ 183 (317)
T PHA02954 108 FRCEEKNGNTSWNDTVTCPNAECQPL-QLEHGSCQPVKEKYSFGEHITINCDVGYEVIGASYISCTAN-SWN-V-IPSCQ 183 (317)
T ss_pred EEeCCCCCCCccCCCCeecceECCCC-CCCCCeeccCCCceeCCCEEEEEcCCCCEECcCCeeEECCC-cCC-C-CCccc
Confidence 5674 46986433 57789755 57799987666779999999999999999999999999987 697 5 79998
Q ss_pred ecc
Q psy6641 78 RWC 80 (87)
Q Consensus 78 ~~~ 80 (87)
+.|
T Consensus 184 ~~C 186 (317)
T PHA02954 184 QKC 186 (317)
T ss_pred ccc
Confidence 643
No 14
>smart00008 HormR Domain present in hormone receptors.
Probab=94.37 E-value=0.054 Score=27.86 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=25.9
Q ss_pred cCCCCEEEEEcCCCCEEcCC---CceeeCCCCccCC
Q psy6641 38 LSPGTVATYACERGFELLGP---SRRVCDKTGQWMP 70 (87)
Q Consensus 38 ~~~g~~~~~~C~~gy~l~G~---~~~~C~~~g~Ws~ 70 (87)
-..|+++...|..++..... ..+.|..+|.|+.
T Consensus 18 t~~G~~~~~~CP~~~~g~~~~~~a~R~C~~~G~W~~ 53 (70)
T smart00008 18 TPAGQLVEVPCPDYFSGFSYKTGASRNCTENGGWSP 53 (70)
T ss_pred CCCCCEEEecCCCcccCcCCCCCEEEEcCCCCCCcc
Confidence 44589999999998765432 6789999999986
No 15
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=92.11 E-value=0.073 Score=26.87 Aligned_cols=33 Identities=30% Similarity=0.649 Sum_probs=25.6
Q ss_pred cCCCCEEEEEcCCCCEE-----cCCCceeeCCCCccCC
Q psy6641 38 LSPGTVATYACERGFEL-----LGPSRRVCDKTGQWMP 70 (87)
Q Consensus 38 ~~~g~~~~~~C~~gy~l-----~G~~~~~C~~~g~Ws~ 70 (87)
-..|.+++..|..++.. .|...+.|..+|+|..
T Consensus 17 T~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~ 54 (66)
T PF02793_consen 17 TPAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEE 54 (66)
T ss_dssp BETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBEC
T ss_pred CCCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCC
Confidence 44588999999988742 2446789999999986
No 16
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=84.28 E-value=0.74 Score=18.75 Aligned_cols=17 Identities=29% Similarity=0.823 Sum_probs=11.9
Q ss_pred EEcCCCCEEcCCCceeeC
Q psy6641 46 YACERGFELLGPSRRVCD 63 (87)
Q Consensus 46 ~~C~~gy~l~G~~~~~C~ 63 (87)
-+|.+||.|.... ..|.
T Consensus 4 C~C~~Gy~l~~d~-~~C~ 20 (24)
T PF12662_consen 4 CSCPPGYQLSPDG-RSCE 20 (24)
T ss_pred eeCCCCCcCCCCC-Cccc
Confidence 4789999987543 4564
No 17
>KOG4564|consensus
Probab=82.42 E-value=1.7 Score=30.48 Aligned_cols=36 Identities=31% Similarity=0.605 Sum_probs=26.6
Q ss_pred cCCCCEEEEEcCCCCE-----EcCCCceeeCCCCccCCCCCC
Q psy6641 38 LSPGTVATYACERGFE-----LLGPSRRVCDKTGQWMPEGIP 74 (87)
Q Consensus 38 ~~~g~~~~~~C~~gy~-----l~G~~~~~C~~~g~Ws~~~~p 74 (87)
-..|+.+...|.+.+. -.|...+.|.++|+|+.. ++
T Consensus 77 t~~G~~v~~~CP~yf~~~~~~~~~~v~R~C~~~G~W~~~-~~ 117 (473)
T KOG4564|consen 77 TPAGTLVTVPCPDYFPGFSYSTSGNVTRNCTSNGTWSER-PP 117 (473)
T ss_pred CCCCceEEecCccccCCCcccCCCceEeecCCCCccCCC-CC
Confidence 3458888888877443 335678899999999975 55
No 18
>PF03436 DUF281: Domain of unknown function (DUF281) ; InterPro: IPR005098 This domain is found in a number of worm proteins and has no known function. The boundaries of the presumed domain are rather uncertain.
Probab=70.96 E-value=2.1 Score=21.56 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=10.7
Q ss_pred CceeeCCCCccCC
Q psy6641 58 SRRVCDKTGQWMP 70 (87)
Q Consensus 58 ~~~~C~~~g~Ws~ 70 (87)
..++|+.||+|..
T Consensus 49 a~lTC~~DGtw~d 61 (62)
T PF03436_consen 49 ASLTCQDDGTWQD 61 (62)
T ss_pred EEEEECCCcEEec
Confidence 4689999999964
No 19
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=50.55 E-value=2.7 Score=22.56 Aligned_cols=40 Identities=18% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCcCCCCEEEEEcCCCCEEcC-CCceeeCCCCccCCCCCCeEeec
Q psy6641 36 ETLSPGTVATYACERGFELLG-PSRRVCDKTGQWMPEGIPFCVRW 79 (87)
Q Consensus 36 ~~~~~g~~~~~~C~~gy~l~G-~~~~~C~~~g~Ws~~~~p~C~~~ 79 (87)
+....|+.|.|.|..--..-| ....+|. ||+.. +|.|-+.
T Consensus 28 ~~v~Hge~VsffCknkekkCsy~~~~qC~-DG~l~---iP~Cf~e 68 (85)
T PF09014_consen 28 NGVLHGEIVSFFCKNKEKKCSYTVDAQCI-DGTLE---IPECFKE 68 (85)
T ss_dssp T-BETT-EEEEEEEETTTTEEEEEEEEEE-TTEE------TTS-S
T ss_pred CceeeCCEEEEEEcCCcccCCCccccEEe-cCccc---CcccccC
Confidence 567789999999976422222 2347884 88774 5677654
No 20
>PF11685 DUF3281: Protein of unknown function (DUF3281); InterPro: IPR021699 This family of bacterial proteins has no known function.
Probab=46.43 E-value=30 Score=22.47 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=12.8
Q ss_pred CCCEEEEEcCCCCEE
Q psy6641 40 PGTVATYACERGFEL 54 (87)
Q Consensus 40 ~g~~~~~~C~~gy~l 54 (87)
.|+....+|++||+=
T Consensus 192 dGsnLkITCd~GY~W 206 (268)
T PF11685_consen 192 DGSNLKITCDPGYEW 206 (268)
T ss_pred cCCeEEEEeCCCCEe
Confidence 378899999999984
No 21
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=37.84 E-value=23 Score=15.66 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=9.4
Q ss_pred EEEEcCCCCEEcCC
Q psy6641 44 ATYACERGFELLGP 57 (87)
Q Consensus 44 ~~~~C~~gy~l~G~ 57 (87)
.+=.|.+||.|..+
T Consensus 19 ~~C~C~~Gy~L~~D 32 (36)
T PF14670_consen 19 YRCSCPPGYKLAED 32 (36)
T ss_dssp EEEE-STTEEE-TT
T ss_pred eEeECCCCCEECcC
Confidence 56789999999743
No 22
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=37.74 E-value=21 Score=15.79 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=9.3
Q ss_pred EEEcCCCCEEcC
Q psy6641 45 TYACERGFELLG 56 (87)
Q Consensus 45 ~~~C~~gy~l~G 56 (87)
.-.|.+||.|-.
T Consensus 19 ~C~CPeGyIlde 30 (34)
T PF09064_consen 19 QCFCPEGYILDE 30 (34)
T ss_pred ceeCCCceEecC
Confidence 467899998853
No 23
>PRK13792 lysozyme inhibitor; Provisional
Probab=36.97 E-value=87 Score=18.16 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=19.1
Q ss_pred cCCCCCCCCCe----EEEecCCCcCCCCEEEEEcCCCCE
Q psy6641 19 ECRFPGAPAHS----SIVFSNETLSPGTVATYACERGFE 53 (87)
Q Consensus 19 ~C~~p~~~~~g----~~~~~~~~~~~g~~~~~~C~~gy~ 53 (87)
.|........| .+......-.....++|.|+.|-.
T Consensus 18 aCs~~~~~~~~~~~~~l~ip~~~~~~~~tv~YqC~~~~~ 56 (127)
T PRK13792 18 ACGGSDDDKQTAQVDYLALPGDAKLDTRSVDYKCENGRK 56 (127)
T ss_pred cccCCCCCcccccceeeecCCCcccccceEEEECCCCCE
Confidence 46655444332 222333334446789999987653
No 24
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=34.96 E-value=16 Score=12.40 Aligned_cols=6 Identities=33% Similarity=1.115 Sum_probs=2.4
Q ss_pred EcCCCC
Q psy6641 47 ACERGF 52 (87)
Q Consensus 47 ~C~~gy 52 (87)
.|.+||
T Consensus 3 ~C~~G~ 8 (13)
T PF12661_consen 3 QCPPGW 8 (13)
T ss_dssp EE-TTE
T ss_pred cCcCCC
Confidence 355554
No 25
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=32.59 E-value=33 Score=15.44 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=11.4
Q ss_pred EEEEEcCCCCEEcCCC
Q psy6641 43 VATYACERGFELLGPS 58 (87)
Q Consensus 43 ~~~~~C~~gy~l~G~~ 58 (87)
.-+..|..||...|+.
T Consensus 20 ~eecrCllgyk~~~~~ 35 (37)
T PF12946_consen 20 SEECRCLLGYKKVGGK 35 (37)
T ss_dssp EEEEEE-TTEEEETTE
T ss_pred CEEEEeeCCccccCCC
Confidence 3568999999988753
No 26
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=31.42 E-value=70 Score=16.58 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=12.3
Q ss_pred CCEEEEEcCCCCEEcCCCc
Q psy6641 41 GTVATYACERGFELLGPSR 59 (87)
Q Consensus 41 g~~~~~~C~~gy~l~G~~~ 59 (87)
-..+.|.|+.|..|.....
T Consensus 46 CGAvdYFC~~c~gLiSKkr 64 (70)
T PF07191_consen 46 CGAVDYFCNHCHGLISKKR 64 (70)
T ss_dssp TTEEEEE-TTTT-EE-TTT
T ss_pred hcccceeeccCCceeecce
Confidence 4578899999998886543
No 27
>PF14704 DERM: Dermatopontin
Probab=26.38 E-value=65 Score=18.97 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=16.3
Q ss_pred CCCCEEEEEcCCCCEEcCC
Q psy6641 39 SPGTVATYACERGFELLGP 57 (87)
Q Consensus 39 ~~g~~~~~~C~~gy~l~G~ 57 (87)
.++..+.|+|..++.|.|-
T Consensus 57 ~~d~~~~~tCp~n~~i~G~ 75 (152)
T PF14704_consen 57 NYDQPFNFTCPSNYYITGM 75 (152)
T ss_pred ccCCcEEEECCCCCEEEEE
Confidence 3578999999999999884
No 28
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=21.88 E-value=62 Score=14.37 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=7.3
Q ss_pred EEcCCCCEEc
Q psy6641 46 YACERGFELL 55 (87)
Q Consensus 46 ~~C~~gy~l~ 55 (87)
=.|.+||.+.
T Consensus 27 C~C~~Gy~~~ 36 (42)
T PF07645_consen 27 CSCPPGYELN 36 (42)
T ss_dssp EEESTTEEEC
T ss_pred eeCCCCcEEC
Confidence 4589999843
No 29
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=20.44 E-value=1.1e+02 Score=13.70 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=12.9
Q ss_pred EEcCCCCEEcCCCceeeCCCCccCCCCCCeEeec
Q psy6641 46 YACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79 (87)
Q Consensus 46 ~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~ 79 (87)
|.|..|... ...|-.+-.|+.. .-.|...
T Consensus 19 ~~C~~g~~~----~~~C~~g~~fd~~-~~~C~~~ 47 (53)
T PF01607_consen 19 YQCVNGQAV----EQRCPEGLYFDPS-SQRCVPP 47 (53)
T ss_dssp EEEETTEEE----EEE-TTS-EE-TT-TSSEE-T
T ss_pred EEeeCCcEE----CCCCcCCCEECcC-cCEEcCC
Confidence 555544333 4566444445654 6666644
No 30
>PF13397 DUF4109: Domain of unknown function (DUF4109)
Probab=20.39 E-value=1.8e+02 Score=16.34 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=14.9
Q ss_pred CcCCCCEEEEEcCCCCEEc
Q psy6641 37 TLSPGTVATYACERGFELL 55 (87)
Q Consensus 37 ~~~~g~~~~~~C~~gy~l~ 55 (87)
.+.....|+|.|..|+...
T Consensus 20 ~~apR~~v~Y~C~~Gh~~~ 38 (105)
T PF13397_consen 20 EFAPRQRVSYWCPNGHETE 38 (105)
T ss_pred CccCceEEEEECCCCCEEe
Confidence 3445778999999998764
No 31
>PF02822 Antistasin: Antistasin family; InterPro: IPR004094 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This group of serine protease inhibitors belong to MEROPS inhibitor family I15, clan IO. They inhibit serine peptidases of the S1 family (IPR001254 from INTERPRO) [] and are characterised by a well conserved pattern of cysteine residues. Many of the proteins that belong to this family are anti-coagulants.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1HIA_I 1BX8_A 1BX7_A 3BG4_D 1C9P_B 1EJA_B 1SKZ_A.
Probab=20.38 E-value=71 Score=12.96 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=5.5
Q ss_pred EEEEcCCCCEEcC
Q psy6641 44 ATYACERGFELLG 56 (87)
Q Consensus 44 ~~~~C~~gy~l~G 56 (87)
+...|..||++-.
T Consensus 6 C~~~C~~Gf~~D~ 18 (26)
T PF02822_consen 6 CRMYCPYGFKTDE 18 (26)
T ss_dssp ES---TT-EEE-T
T ss_pred cCCcCCCcccCCC
Confidence 5567888887754
Done!