RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6641
(87 letters)
>gnl|CDD|153056 cd00033, CCP, Complement control protein (CCP) modules (aka short
consensus repeats SCRs or SUSHI repeats) have been
identified in several proteins of the complement
system. SUSHI repeats (short complement-like repeat,
SCR) are abundant in complement control proteins. The
complement control protein (CCP) modules (also known as
short consensus repeats SCRs or SUSHI repeats) contain
approximately 60 amino acid residues and have been
identified in several proteins of the complement
system. Typically, 2 to 4 modules contribute to a
binding site, implying that the orientation of the
modules to each other is critical for function.
Length = 57
Score = 56.3 bits (136), Expect = 2e-12
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C P P + ++ S + S G+ TY+C G+ L+G S C + G W P P C
Sbjct: 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPP-PPTCE 57
>gnl|CDD|214478 smart00032, CCP, Domain abundant in complement control proteins;
SUSHI repeat; short complement-like repeat (SCR). The
complement control protein (CCP) modules (also known as
short consensus repeats SCRs or SUSHI repeats) contain
approximately 60 amino acid residues and have been
identified in several proteins of the complement
system. A missense mutation in seventh CCP domain
causes deficiency of the b subunit of factor XIII.
Length = 56
Score = 56.0 bits (135), Expect = 2e-12
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
C P + ++ S+ T S G TY+C+ G+ L+G S C + G W P P C
Sbjct: 1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPP-PPTC 56
>gnl|CDD|215703 pfam00084, Sushi, Sushi domain (SCR repeat).
Length = 56
Score = 44.1 bits (104), Expect = 9e-08
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
C P H I + + G+V Y C+ G+ L+G S C G W P +P C
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPP-LPEC 56
>gnl|CDD|165022 PHA02639, PHA02639, EEV host range protein; Provisional.
Length = 295
Score = 41.6 bits (97), Expect = 1e-05
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 12 PEVSEYEECRFPGAP-AHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
P + + CRFP + + + SN+ T ++C+ GF+L+G C+ W P
Sbjct: 141 PPICKMINCRFPALQNGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFP 200
Query: 71 EGIPFCVR 78
IP CVR
Sbjct: 201 S-IPTCVR 207
Score = 25.0 bits (54), Expect = 6.1
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC--DKTGQWMPEGIPFCV 77
C P ++ I E G + Y C + L+G R C DK PFC+
Sbjct: 22 CDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFCM 81
>gnl|CDD|165167 PHA02817, PHA02817, EEV Host range protein; Provisional.
Length = 225
Score = 37.6 bits (87), Expect = 2e-04
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 12 PEVSEYEECRFP--------GAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCD 63
V + CRFP G P + +E +++C+ GF L+G VC
Sbjct: 81 FPVCKIIRCRFPALQNGFVNGIPDSKKFYYESEV-------SFSCKPGFVLIGTKYSVCG 133
Query: 64 KTGQWMPEGIPFCVRW 79
W+P+ +P C R
Sbjct: 134 INSSWIPK-VPICSRD 148
Score = 29.9 bits (67), Expect = 0.12
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYAC---ERG--FELLGPSRRVCDKTGQWMP 70
+ +C +P + + I + G+ T+ C RG + L+G +C+K G+W
Sbjct: 20 DLNKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNK 79
Query: 71 EGIPFC 76
E P C
Sbjct: 80 E-FPVC 84
>gnl|CDD|165176 PHA02831, PHA02831, EEV host range protein; Provisional.
Length = 268
Score = 37.7 bits (87), Expect = 2e-04
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 41 GTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
G + + C++GF LLG S CD W P GIP CV+
Sbjct: 161 GDIVNFKCKKGFILLGSSVSTCDINSIWYP-GIPKCVK 197
>gnl|CDD|165263 PHA02954, PHA02954, EEV membrane glycoprotein; Provisional.
Length = 317
Score = 32.4 bits (73), Expect = 0.014
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 26 PAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
P+ S+ + S T S G V +C+ GF L G C G+W P +P CVR
Sbjct: 189 PSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTC-IDGKWNPV-LPICVR 239
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 269
Score = 30.1 bits (68), Expect = 0.087
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 9 LVLPEVSEYEECRFPGAPAHSSIVFSNETLS 39
LV+P Y + PG PA+S++VF E L
Sbjct: 217 LVIPPELAYGKAGVPGIPANSTLVFDVELLD 247
>gnl|CDD|222943 PHA02927, PHA02927, secreted complement-binding protein;
Provisional.
Length = 263
Score = 29.6 bits (66), Expect = 0.14
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYA--------CERGFELLGPSRRVCDK 64
E S+ C+ P H +I SN LS G +Y+ C+ G++L G S C
Sbjct: 194 EWSDPPTCQIVKCP-HPTI--SNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSP 250
Query: 65 TGQWMPEGIPFCVR 78
W PE +P CVR
Sbjct: 251 GNTWQPE-LPKCVR 263
Score = 28.5 bits (63), Expect = 0.37
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 14 VSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
+ E +C+ P + ++ + + G+V TY+C G+ L+G S +C G+W
Sbjct: 142 ICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEW 195
Score = 28.1 bits (62), Expect = 0.54
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 41 GTVATYACERGFELLGPSRRVCD--KTGQ--WMPEGIPFC 76
G+ TY+C G++L+G S+ C+ TG W PE P C
Sbjct: 105 GSSITYSCNSGYQLIGESKSYCELGSTGSMVWNPEA-PIC 143
>gnl|CDD|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR5-7 subunits of Kainate receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR5-7 subunits of Kainate
receptor. While this N-terminal domain belongs to the
periplasmic-binding fold type I superfamily, the
glutamate-binding domain of the iGluR is structurally
homologous to the periplasmic-binding fold type II. The
LIVBP-like domain of iGluRs is thought to play a role
in the initial assembly of iGluR subunits, but it is
not well understood how this domain is arranged and
functions in intact iGluR. There are five types of
kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2,
which are structurally similar to AMPA and NMDA
subunits of ionotropic glutamate receptors. KA1 and KA2
subunits can only form functional receptors with one of
the GluR5-7 subunits. Moreover, GluR5-7 can also form
functional homomeric receptor channels activated by
kainate and glutamate when expressed in heterologous
systems. Kainate receptors are involved in excitatory
neurotransmission by activating postsynaptic receptors
and in inhibitory neurotransmission by modulating
release of the inhibitory neurotransmitter GABA through
a presynaptic mechanism. Kainate receptors are closely
related to AMAP receptors. In contrast of AMPA
receptors, kainate receptors play only a minor role in
signaling at synapses and their function is not well
defined.
Length = 384
Score = 27.3 bits (60), Expect = 0.89
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACER--GFELLGPSRRVCDK 64
+V EE F + ++I+ N TL P T TY +R + +++ CD+
Sbjct: 18 QVMSAEELAFRFS---ANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQ 68
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 26.1 bits (58), Expect = 2.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 41 GTVATYACERGFELLGPSRRVCDKTGQWMP 70
GT+ Y+ + + G C TG W+P
Sbjct: 267 GTLYAYSDKPVVDPQGEVAGFCSSTGGWLP 296
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of GMIP (Gem interacting protein) and
PARG1 (PTPL1-associated RhoGAP1). GMIP plays important
roles in neurite growth and axonal guidance, and
interacts with Gem, a member of the RGK subfamily of
the Ras small GTPase superfamily, through the
N-terminal half of the protein. GMIP contains a
C-terminal RhoGAP domain. GMIP inhibits RhoA function,
but is inactive towards Rac1 and Cdc41. PARG1 interacts
with Rap2, also a member of the Ras small GTPase
superfamily whose exact function is unknown, and shows
strong preference for Rho. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific
groups of GAPs that enhance the rate of GTP hydrolysis
by several orders of magnitude.
Length = 203
Score = 25.1 bits (55), Expect = 6.0
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 70 PEGIPFCVRWCT 81
P+ +PF ++ CT
Sbjct: 13 PDEVPFIIKKCT 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.477
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,266,227
Number of extensions: 316042
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 21
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)