RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6641
(87 letters)
>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain,
SCR, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 53.2 bits (128), Expect = 2e-11
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
S C + S+ L G TY C+ G++++G C W + P
Sbjct: 3 SGSSGCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSD-PP 61
Query: 75 FCVR 78
FC +
Sbjct: 62 FCEK 65
>1ly2_A CD21, complement receptor type 2; epstein BARR virus, regulator of
comple activation, short consensus repeat, viral
receptor; HET: NAG; 1.80A {Homo sapiens} SCOP: g.18.1.1
g.18.1.1 PDB: 1w2r_A 1w2s_B 1ghq_B* 3oed_C
Length = 130
Score = 54.5 bits (131), Expect = 3e-11
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
++Y C P P + + G T+AC+ F + G C W P
Sbjct: 65 YFNKYSSCPEPIVPGGY-KIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTR 123
Query: 73 IPFCVR 78
+P CV
Sbjct: 124 LPTCVS 129
Score = 49.1 bits (117), Expect = 3e-09
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPF 75
C P + I + + ++ GTV Y+C F L+G +C G W P
Sbjct: 4 CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APK 62
Query: 76 CVR 78
C
Sbjct: 63 CEY 65
>2ehf_A CUB and sushi domain-containing protein 1; CUB and sushi multiple
domains protein 1, CSMD1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 73
Score = 52.1 bits (125), Expect = 7e-11
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
C PG PA+ + + G T+ C FEL+G C + QW P C
Sbjct: 14 CGDPGIPAYGKR--TGSSFLHGDTLTFECPAAFELVGERVITCQQNNQWSGN-KPSCSGP 70
Query: 80 CTG 82
+G
Sbjct: 71 SSG 73
>1rid_A Complement control protein; regulation, SCR, immune system; HET:
IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1
g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A
1vvc_A 1vvd_A 1vve_A
Length = 244
Score = 52.2 bits (125), Expect = 7e-10
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C P + S + C+ G++L G S C W PE +P CVR
Sbjct: 187 CPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPE-LPKCVR 244
Score = 46.4 bits (110), Expect = 1e-07
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
+C+ P + ++ + + G+V TY+C G+ L+G S +C G+W P C
Sbjct: 128 KCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEW--SDPPTCQI 184
Score = 43.0 bits (101), Expect = 2e-06
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
+S +N + G Y C G+ TG C++
Sbjct: 6 SRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTGWTL-FNQCIK 64
Score = 42.6 bits (100), Expect = 2e-06
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPF 75
C P + + + G+ TY+C G+ L+G S+ C + W PE P
Sbjct: 67 CPSPRDIDNGQLDIGG--VDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPE-API 123
Query: 76 CVR 78
C
Sbjct: 124 CES 126
>3o8e_B Membrane cofactor protein; short consensus repeat, complement
control protein, fiber KN virus-receptor interaction,
cell adhesion-immunity complex; HET: NAG; 2.84A {Homo
sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M*
Length = 252
Score = 52.2 bits (125), Expect = 7e-10
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
CRFP I + + C++GF L G VCD W P +P C++
Sbjct: 194 CRFPVVENGKQISGFGKKFYYKATVMFECDKGFYLDGSDTIVCDSNSTWDPP-VPKCLK 251
Score = 48.8 bits (116), Expect = 1e-08
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 20 CRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGP--SRRVCDKTGQWMPEGIPFC 76
C P ++ + G Y C++G+ + P + +CD+ W+P C
Sbjct: 1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDAC 60
Query: 77 VR 78
R
Sbjct: 61 YR 62
Score = 48.4 bits (115), Expect = 2e-08
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP--EGIPFC 76
C + P + V +N T G + C G+ L+G C+ G P C
Sbjct: 64 TCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPIC 123
Query: 77 VR 78
+
Sbjct: 124 EK 125
Score = 41.8 bits (98), Expect = 4e-06
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 16 EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG-----FELLGPSRRVCDKTGQWM 69
E C P + FS E TY+C+ F L+G S C W
Sbjct: 124 EKVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVWS 183
Query: 70 PEGIPFCVR 78
P C
Sbjct: 184 RA-APECKV 191
>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat,
sushi, complement control protein, N glycosylation,
multi-domain, membrane adhesion; HET: NAG MAN; 2.70A
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A
Length = 319
Score = 51.9 bits (124), Expect = 1e-09
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C FP P + + + TL AT+ C G+ L GP C K G W +P C
Sbjct: 186 CPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNW--SAMPSCKA 243
Query: 79 WCT 81
C
Sbjct: 244 SCK 246
Score = 48.4 bits (115), Expect = 2e-08
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C F G + ++ ++ +++C GF L G C + G+W PE +P C
Sbjct: 64 VCPFAGILENGAVRYTT--FEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPE-LPVCAP 120
Score = 48.0 bits (114), Expect = 3e-08
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGP-SRRVCDKTGQWMPEGIPFCVR 78
C P S++V PG TY+C+ G+ G + +C TG W C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPIN-TLKCTP 62
Score = 44.6 bits (105), Expect = 4e-07
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 6/63 (9%)
Query: 20 CRFPGAPAHSSIVFSNETLS----PGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF 75
C P P +++ + A + C + G C G W +P
Sbjct: 123 CPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTK--LPE 180
Query: 76 CVR 78
C
Sbjct: 181 CRE 183
Score = 34.9 bits (80), Expect = 0.001
Identities = 8/69 (11%), Positives = 16/69 (23%), Gaps = 11/69 (15%)
Query: 18 EECRFPGAPAHSSIVFSN--------ETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
C+ P A + G ++ C+ + + G
Sbjct: 243 ASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIE 302
Query: 70 PEGIPFCVR 78
P C +
Sbjct: 303 V---PKCFK 308
>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi
domain, human complement system, complement second
component C2; 1.80A {Homo sapiens}
Length = 223
Score = 51.1 bits (122), Expect = 2e-09
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C P + + + G ++ CE GF L G R C G W E C
Sbjct: 68 RCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGE-TAVCDN 126
Score = 47.2 bits (112), Expect = 4e-08
Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C PG + + G Y C L G S R C G W P C +
Sbjct: 130 HCPNPGISLGAVR--TGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGT-EPICRQ 186
Query: 79 WCTG 82
+
Sbjct: 187 PYSY 190
Score = 41.8 bits (98), Expect = 4e-06
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
C + + S+ +PG++ TY+C +G P+ R+C +GQW
Sbjct: 4 CPQNVNISGGTFTLSH-GWAPGSLLTYSCPQGL-YPSPASRLCKSSGQW 50
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 50.5 bits (120), Expect = 4e-09
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
+ +C P + + + +AC GF L G + C+ G W P
Sbjct: 324 LSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNAQGTWEPS- 382
Query: 73 IPFCVRWCTGLG 84
P C + C
Sbjct: 383 APVCEKECQAPP 394
Score = 48.6 bits (115), Expect = 2e-08
Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
+C I T+ C GF L G S+ C W PE
Sbjct: 575 LSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADNTWDPE- 633
Query: 73 IPFCVRWCTG 82
IP C +
Sbjct: 634 IPVCEKETCQ 643
Score = 48.2 bits (114), Expect = 3e-08
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKT----GQWMPEGIPF 75
C P + I + + ++ GTV Y+C F L+G +C G W P
Sbjct: 3 CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APK 61
Query: 76 CVRWC 80
C +
Sbjct: 62 CEYFN 66
Score = 47.0 bits (111), Expect = 7e-08
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
++Y C P P + + G T+AC+ F + G C W P
Sbjct: 64 YFNKYSSCPEPIVP-GGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTR 122
Query: 73 IPFCVRWC 80
+P CV
Sbjct: 123 LPTCVSVF 130
Score = 46.3 bits (109), Expect = 1e-07
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 20 CRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C P + G V T CE G+ L G + C QW P + C
Sbjct: 892 CSSPADMDGIQKGLEPRKMYQYGAVVTLECEDGYMLEGSPQSQCQSDHQWNPP-LAVCRS 950
Score = 45.9 bits (108), Expect = 2e-07
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 19 ECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
EC+ P + + PGT Y+C G+ L+G C G W P +P C
Sbjct: 389 ECQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPP-VPQCK 447
Query: 78 R 78
Sbjct: 448 V 448
Score = 45.5 bits (107), Expect = 2e-07
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
C P + ++ S + C GF + G C W+P
Sbjct: 761 RSPPVTRCPNPEVKHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSRVIRCHTDNTWVPG- 819
Query: 73 IPFCVRWCT 81
+P C++
Sbjct: 820 VPTCIKKAF 828
Score = 44.7 bits (105), Expect = 4e-07
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 19 ECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
EC + N ++PG TY+CE G+ L+G C +G+W P C
Sbjct: 133 ECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIINCLSSGKWSAV-PPTCE 191
Query: 78 R 78
Sbjct: 192 E 192
Score = 43.6 bits (102), Expect = 1e-06
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
+ C P + + N SPG Y+C++G+ L+G + +C G W
Sbjct: 824 IKKAFIGCPPPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLVGEALLLCTHEGTWSQP 883
Query: 72 GIPFCVR 78
P C
Sbjct: 884 -APHCKE 889
Score = 39.3 bits (91), Expect = 3e-05
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVC----DKTG 66
+ + C P + E G +Y C++GF LLG + C G
Sbjct: 691 IPLCKVIHCHPPPVIVNGKHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQCRSDSKGHG 750
Query: 67 QWMPEGIPFCVRWCT 81
W P C+R
Sbjct: 751 SWSGP-SPQCLRSPP 764
Score = 38.2 bits (88), Expect = 1e-04
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
C+ G + + L G A + C+ G+ L GP C GQ
Sbjct: 195 CKSLGRFPNGKVKEPP-ILRVGVTANFFCDEGYRLQGPPSSRCVIAGQG 242
Score = 32.8 bits (74), Expect = 0.006
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
C G + + +C G++L G + C T W E I C
Sbjct: 451 CEATGRQLLTK----PQHQFVRPDVNSSCGEGYKLSGSVYQECQGTIPWFME-IRLCKEI 505
Query: 80 C 80
Sbjct: 506 T 506
Score = 31.3 bits (70), Expect = 0.024
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC--DKTGQWMPEGI 73
E E C+ S + +C+ G++L G + ++C + G W + I
Sbjct: 638 EKETCQHVRQSLQELPAGSR-----VELVNTSCQDGYQLTGHAYQMCQDAENGIWFKK-I 691
Query: 74 PFCVR 78
P C
Sbjct: 692 PLCKV 696
Score = 30.9 bits (69), Expect = 0.037
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 12/82 (14%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC-- 62
+ + C P + + S+ E GT TY C G F L+G S C
Sbjct: 499 IRLCKEITCPPPPVIYNGAHTGSSLEDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTS 558
Query: 63 --DKTGQWMPEGIPFCVRWCTG 82
+ G W P C
Sbjct: 559 NDQERGTWSGP-APLCKLSLLA 579
Score = 29.3 bits (65), Expect = 0.12
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACER------GFELLGPSRRVC-- 62
V E C P + + ++ +S G++ TY C+ F L+G S C
Sbjct: 248 MPVCEEIFCPSPPPILNGRHIGNSLANVSYGSIVTYTCDPDPEEGVNFILIGESTLRCTV 307
Query: 63 --DKTGQWMPEGIPFCVRWCT 81
KTG W P C +
Sbjct: 308 DSQKTGTWSGP-APRCELSTS 327
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 49.7 bits (118), Expect = 7e-09
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
C PG P + V S L TY C RG L G RR C + G W P C
Sbjct: 140 CSNPGIPIGTRKVGSQYRL--EDSVTYHCSRGLTLRGSQRRTCQEGGSWSGT-EPSCQDS 196
Query: 80 CTG 82
Sbjct: 197 FMY 199
Score = 49.7 bits (118), Expect = 7e-09
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C P + + + ++ C G+ L G + R C G+W + C
Sbjct: 77 HCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQ-TAICDN 135
Score = 43.5 bits (102), Expect = 1e-06
Identities = 13/50 (26%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
C G L G Y C GF R C TG W
Sbjct: 11 SCSLEGVEIKGGSF---RLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSW 57
>1h03_P Complement decay-accelerating factor; immune system protein,
enteroviral receptor, bacterial receptor, ligand for
CD97, complement pathway; 1.7A {Homo sapiens} SCOP:
g.18.1.1 g.18.1.1 PDB: 1h2q_P 1uot_P 1upn_E 1h2p_P
1h04_P 2qzd_A
Length = 125
Score = 47.9 bits (114), Expect = 8e-09
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
C P + I + TYAC +GF ++G C + G+W P C
Sbjct: 65 CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPEC 123
Score = 46.0 bits (109), Expect = 5e-08
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
C PG + I G +++C G++L G + C +G QW +P C
Sbjct: 3 CPNPGEIRNGQIDVPGGI-LFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPEC 60
Query: 77 VR 78
Sbjct: 61 RE 62
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 49.6 bits (118), Expect = 9e-09
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
P+ E +C P ++ ++ N S + + C GF + G S C +W P
Sbjct: 190 PQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLNKWEP 249
Query: 71 EGIPFCVR 78
E +P C +
Sbjct: 250 E-LPSCFK 256
Score = 43.5 bits (102), Expect = 1e-06
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPF 75
+C+ P P + + G+ Y C +G+ L+G S VC D++ W E P
Sbjct: 63 QCKTPSDPENGLVHVHTGI-EFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTE-API 120
Query: 76 CVR 78
C
Sbjct: 121 CEW 123
Score = 41.9 bits (98), Expect = 5e-06
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 20 CRFPGAPAHSSIVFSN--ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C P + + GT Y C G+ + C + W C+
Sbjct: 3 CPAPSQLPSAKPINLTDESMFPIGTYLLYECLPGY-IKRQFSITCKQDSTWTSA-EDKCI 60
Query: 78 R 78
R
Sbjct: 61 R 61
Score = 40.0 bits (93), Expect = 2e-05
Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 11 LPEVSEYEECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWM 69
LP + CR P + + G T CE G+ L G S+ C G W
Sbjct: 251 LPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEGSSQSQCQSDGSWN 310
Query: 70 PEGIPFCVRWCTGLGW 85
P R
Sbjct: 311 PLLAKCVSRLADPEVP 326
Score = 36.9 bits (85), Expect = 3e-04
Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DKTGQW 68
C P + S E G V TY C F L+G C + G W
Sbjct: 126 CEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGEIGVW 185
Query: 69 MPEGIPFCVR 78
P C+
Sbjct: 186 SGP-PPQCIE 194
>2xrb_A Complement regulatory protein CRRY; immune system, immunology;
2.50A {Rattus norvegicus} PDB: 2xrd_A
Length = 290
Score = 48.1 bits (114), Expect = 2e-08
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
P+ E +C P + + S + + C+ GF + G S C +W P+
Sbjct: 225 PQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQ 284
Query: 72 GIPFCV 77
+P C
Sbjct: 285 -LPSCA 289
Score = 42.7 bits (100), Expect = 2e-06
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 19 ECRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
+C P ++ + T GT Y C G+ + C+ W C
Sbjct: 37 QCPAPPLFPYAKPINPTDESTFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSP-QDVC 94
Query: 77 VR 78
+R
Sbjct: 95 IR 96
Score = 41.2 bits (96), Expect = 6e-06
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPF 75
+C P P + + + + G+ TY C G+ L+G S +C D++ W E P
Sbjct: 98 QCETPLDPQNGIVHVNT-DIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAE-API 155
Query: 76 CVR 78
C
Sbjct: 156 CES 158
Score = 33.1 bits (75), Expect = 0.005
Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 16 EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DK 64
E C P + + N E G V TY C F L+G C +
Sbjct: 157 ESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQ 216
Query: 65 TGQWMPEGIPFCVR 78
G W P C+
Sbjct: 217 VGVWSGP-PPQCIE 229
Score = 28.5 bits (63), Expect = 0.21
Identities = 4/36 (11%), Positives = 7/36 (19%), Gaps = 3/36 (8%)
Query: 48 CERGFELLGPSRRVCDKTGQWM---PEGIPFCVRWC 80
+ +G C P + C
Sbjct: 3 ASSPLDPVGRLVAFCRGGVHLAVLLLFLSPSTLGQC 38
>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of
complement pathway, regulator of complement; 2.2A {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB:
1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A
2qzh_A 2qzf_A
Length = 254
Score = 48.0 bits (114), Expect = 3e-08
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
C P + I + TYAC +GF ++G C + G+W P C
Sbjct: 193 CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPEC 251
Score = 44.5 bits (105), Expect = 4e-07
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 18 EECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSR--RVCDKTGQWMPEGIP 74
++C P ++ T TV TY CE F + + +C K QW
Sbjct: 2 QDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI-EE 60
Query: 75 FCVRWC 80
FC R C
Sbjct: 61 FCNRSC 66
Score = 41.4 bits (97), Expect = 6e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF 75
C PG + I G +++C G++L G + C +G QW +P
Sbjct: 130 SCPNPGEIRNGQIDVPGGI-LFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPE 187
Query: 76 CVR 78
C
Sbjct: 188 CRE 190
Score = 39.9 bits (93), Expect = 2e-05
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 19 ECRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELLGP--SRRVCDKTGQWMPEGI 73
C P +S+ + GTV Y C G+ + C + +W +
Sbjct: 65 SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA-V 123
Query: 74 PFCVR 78
FC +
Sbjct: 124 EFCKK 128
>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_A
Length = 155
Score = 46.9 bits (111), Expect = 3e-08
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRV------CDKTGQWMPEG 72
EC P H I S +C+ G+++L + + C K G W +
Sbjct: 7 ECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNK- 65
Query: 73 IPFCVR 78
IP C
Sbjct: 66 IPTCKI 71
Score = 43.8 bits (103), Expect = 5e-07
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 20 CRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELL---GPSRRVCDKTGQWMPEG-- 72
CR PG H I FS N + + Y+C+ + + C G WM +
Sbjct: 74 CRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLG 133
Query: 73 --IPFCVRWC 80
+P C+ C
Sbjct: 134 RSLPTCLPVC 143
>3iyp_F Complement decay-accelerating factor; virus, receptor, complex,
echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo
sapiens}
Length = 381
Score = 47.7 bits (113), Expect = 4e-08
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
C P + I + TYAC +GF ++G C + G+W P C
Sbjct: 225 CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPEC 283
Query: 77 VRWC 80
Sbjct: 284 RGKS 287
Score = 42.7 bits (100), Expect = 2e-06
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 17 YEECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSR--RVCDKTGQWMPEGI 73
+++C P ++ T TV TY CE F + + +C K QW
Sbjct: 33 WQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI-E 91
Query: 74 PFCVRWC 80
FC R C
Sbjct: 92 EFCNRSC 98
Score = 39.7 bits (92), Expect = 3e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF 75
C PG + I G +++C G++L G + C +G QW +P
Sbjct: 162 SCPNPGEIRNGQIDVPGGI-LFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPE 219
Query: 76 CVR 78
C
Sbjct: 220 CRE 222
Score = 38.5 bits (89), Expect = 7e-05
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 19 ECRFPGAPAHSSIVF---SNETLSPGTVATYACERGFELLGP--SRRVCDKTGQWMPEGI 73
C P +S+ + GTV Y C G+ + C + +W +
Sbjct: 97 SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKW-STAV 155
Query: 74 PFCVR 78
FC +
Sbjct: 156 EFCKK 160
Score = 28.9 bits (64), Expect = 0.16
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 6/49 (12%)
Query: 14 VSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC 62
VS + P S + GT + F L G +
Sbjct: 333 VSRTTKHFHETTPNKGSGT------TSGTTRLLSGHTCFTLTGLLGTLV 375
>2wii_C H factor 1, complement factor H; immune system, sushi, secreted,
polymorphism, glycoprotein, complement system,
complement pathway, immune response; HET: NAG BMA;
2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A
Length = 277
Score = 47.2 bits (112), Expect = 5e-08
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
R S S++T GT A Y C G+ LG VC K + C +
Sbjct: 13 PRRNTEILTGSW--SDQTYPEGTQAIYKCRPGYRSLGNIIMVCRKGEWVALNPLRKCQK 69
Score = 47.2 bits (112), Expect = 5e-08
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 19 ECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C PG + + G A Y C G++LLG T W + IP C
Sbjct: 71 PCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND-IPICE 129
Query: 78 R 78
Sbjct: 130 V 130
Score = 46.5 bits (110), Expect = 8e-08
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 20 CRFPGAPAHSSIVFSN----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF 75
C AP + IV S G + C G+++ G C G W E P
Sbjct: 133 CLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE-KPK 191
Query: 76 CVR 78
CV
Sbjct: 192 CVE 194
Score = 41.5 bits (97), Expect = 5e-06
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
C+ P S I Y C G+E VC ++G W P +P C
Sbjct: 197 CKSPDVINGSPISQKIIY-KENERFQYKCNMGYEYSERGDAVCTESG-WRP--LPSCEEA 252
Query: 80 CTG 82
G
Sbjct: 253 RGG 255
>2c8i_E CD55, complement decay-accelerating factor; picornavirus, DAF,
virus-receptor complex, antigen, blood group antigen,
complement pathway, GPI-anchor; 14.00A {Homo sapiens}
SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
Length = 316
Score = 47.2 bits (112), Expect = 5e-08
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEG 72
C P + I + TYAC +GF ++G C + G+W
Sbjct: 252 REIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP- 310
Query: 73 IPFC 76
P C
Sbjct: 311 PPEC 314
Score = 42.6 bits (100), Expect = 2e-06
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 18 EECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLG--PSRRVCDKTGQWMPEGIP 74
++C P ++ T TV TY CE F + +C K QW
Sbjct: 1 QDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI-EE 59
Query: 75 FCVR 78
FC R
Sbjct: 60 FCNR 63
Score = 42.6 bits (100), Expect = 2e-06
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
C PG + I L G +++C G++L G + C +G QW +P C
Sbjct: 194 CPNPGEIRNGQIDVPGGILF-GATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPEC 251
Query: 77 VR 78
Sbjct: 252 RE 253
Score = 39.9 bits (93), Expect = 2e-05
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSR--RVCDKTGQW 68
+ ++C P ++ + TV TY CE F + + +C K QW
Sbjct: 59 EFCNRSQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQW 118
Query: 69 MPEGIPFCVRWC 80
FC R C
Sbjct: 119 SDI-EEFCNRSC 129
Score = 37.6 bits (87), Expect = 1e-04
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 20 CRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELLGP--SRRVCDKTGQWMPEGIP 74
C P +S+ + GTV Y C G+ + C + +W +
Sbjct: 129 CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA-VE 187
Query: 75 FCVRWC 80
FC +
Sbjct: 188 FCKKKS 193
>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR,
CCP, immune system; NMR {Rattus norvegicus}
Length = 320
Score = 46.6 bits (110), Expect = 8e-08
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
P ++ IV N S + + C+ GF + G S C +W P+ +P C +
Sbjct: 199 KCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQ-LPSCFK 257
Score = 41.9 bits (98), Expect = 4e-06
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 19 ECRFPGAPAHSSIVFSNE--TLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
+C P ++ + + T GT Y C G+ + C+ W C
Sbjct: 4 QCPAPPLFPYAKPINPTDESTFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSP-QDVC 61
Query: 77 VR 78
+R
Sbjct: 62 IR 63
Score = 39.6 bits (92), Expect = 2e-05
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
C P P + + N + G+ TY C G+ L+G S +C D++ W E P C
Sbjct: 66 CETPLDPQNGIVH-VNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAE-APIC 123
Query: 77 VR 78
Sbjct: 124 ES 125
Score = 39.2 bits (91), Expect = 3e-05
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
F G + + G T+ C G++L G S C G W +P C
Sbjct: 262 GAFLGELPNGHVFVPQNL-QLGAKVTFVCNTGYQLKGNSSSHCVLDGVESIWNSS-VPVC 319
Score = 33.8 bits (77), Expect = 0.003
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC-- 62
+ E C P + + N E G V TY C F L+G C
Sbjct: 120 APICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTS 179
Query: 63 --DKTGQWMPEGIPFCVR 78
+ G W P C+
Sbjct: 180 IDGQVGVWSGP-PPQCIE 196
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 45.1 bits (106), Expect = 3e-07
Identities = 14/66 (21%), Positives = 22/66 (33%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
+ EC P H + G V ++C+ GF ++GP+ C G
Sbjct: 543 LPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDL 602
Query: 72 GIPFCV 77
I
Sbjct: 603 PICKEQ 608
Score = 44.4 bits (104), Expect = 7e-07
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
R S S++T GT A Y C G+ LG VC K + C +
Sbjct: 7 PPRRNTEILTGSW--SDQTYPEGTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQK 64
Score = 43.2 bits (101), Expect = 2e-06
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 16 EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
+ C PG + + G A Y C G++LLG T W + IP
Sbjct: 63 QKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND-IP 121
Query: 75 FCVR 78
C
Sbjct: 122 ICEV 125
Score = 41.3 bits (96), Expect = 7e-06
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 16 EYEECRFPGAPAHSSIVFSN----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
E +C AP + IV S G + C G+++ G C G W E
Sbjct: 124 EVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE 183
Query: 72 GIPFCVRWC 80
P CV
Sbjct: 184 -KPKCVEIS 191
Score = 41.3 bits (96), Expect = 8e-06
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
+ E C H S+ G + C F ++G C G W
Sbjct: 665 VCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITC-IHGVWTQ- 722
Query: 72 GIPFCVR 78
+P CV
Sbjct: 723 -LPQCVA 728
Score = 40.1 bits (93), Expect = 2e-05
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 20 CRFPGAPAHSSIV-FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C P + I F +P + Y C+ ++L G R C + GQW P C+
Sbjct: 1091 CGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQW--SEPPKCLH 1147
Query: 79 WCT 81
C
Sbjct: 1148 PCV 1150
Score = 40.1 bits (93), Expect = 2e-05
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
P E C+ P +H + +++ G TY C GF + GP+ C
Sbjct: 905 PPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWS--- 961
Query: 72 GIPFCVR 78
P C++
Sbjct: 962 HPPSCIK 968
Score = 40.1 bits (93), Expect = 2e-05
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 2 VNMKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRV 61
+N + V +++ + C P +S + + G + C+ + +
Sbjct: 775 INGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEIT 834
Query: 62 CDKTGQWMPEGIPFCVR 78
C K G+W +
Sbjct: 835 C-KDGRWQSI-PLCVEK 849
Score = 39.3 bits (91), Expect = 4e-05
Identities = 11/69 (15%), Positives = 21/69 (30%)
Query: 18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
+ + I S T + A Y C+ G+ + G+ P C+
Sbjct: 429 TCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGKDGWSAQPTCI 488
Query: 78 RWCTGLGWE 86
+ C +
Sbjct: 489 KSCDIPVFM 497
Score = 39.0 bits (90), Expect = 6e-05
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 20 CRFPGAPAHSSIVFSNETL-----SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
+ +I G + C+RG+ L S + E P
Sbjct: 1150 VISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLE-YP 1208
Query: 75 FCVR 78
C +
Sbjct: 1209 TCAK 1212
Score = 38.6 bits (89), Expect = 7e-05
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN---ETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
P E C P H +I S E+ + GT +Y CE GF + + C
Sbjct: 844 PLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWS 903
Score = 38.2 bits (88), Expect = 8e-05
Identities = 10/62 (16%), Positives = 14/62 (22%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
+ + G AC G+ L V W P V+
Sbjct: 369 RKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVK 428
Query: 79 WC 80
C
Sbjct: 429 TC 430
Score = 37.4 bits (86), Expect = 1e-04
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
E + S + Y C G+E VC ++G +P C
Sbjct: 189 EISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWR---PLPSCE 245
Query: 78 RWC 80
Sbjct: 246 EKS 248
Score = 37.4 bits (86), Expect = 2e-04
Identities = 8/60 (13%), Positives = 13/60 (21%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
+ ++ Y C G+E S G +P C
Sbjct: 489 KSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNGWSDLPICYE 548
Score = 35.9 bits (82), Expect = 5e-04
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C + ++ + + G TY C +++ G S C +W
Sbjct: 971 CLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCI-NSRWTGRPTCRDTS 1029
Query: 79 WCT 81
Sbjct: 1030 CVN 1032
Score = 35.9 bits (82), Expect = 6e-04
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C P + ++ E V Y C F + GP++ C G+W +
Sbjct: 612 CGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWTTLPVCIVEE 670
Score = 33.2 bits (75), Expect = 0.005
Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 2/63 (3%)
Query: 18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
E+ + G TY C GF + W+P P C
Sbjct: 246 EKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTSTGWIP--APRCT 303
Query: 78 RWC 80
Sbjct: 304 LKP 306
Score = 32.0 bits (72), Expect = 0.015
Identities = 11/69 (15%), Positives = 16/69 (23%), Gaps = 3/69 (4%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
P + P + G Y C +E+ G +C P
Sbjct: 1023 PTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEP- 1081
Query: 72 GIPFCVRWC 80
P C
Sbjct: 1082 --PQCKDST 1088
Score = 28.2 bits (62), Expect = 0.34
Identities = 12/59 (20%), Positives = 19/59 (32%)
Query: 23 PGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCT 81
G H ++ ++ G +Y C+ FE S Q C+R C
Sbjct: 314 HGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDGWSPAVPCLRKCY 372
>1gkg_A Complement receptor type 1; module, SCR, structure, sushi; NMR
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1ppq_A
Length = 136
Score = 43.8 bits (103), Expect = 3e-07
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
C+ P P + + + G+ TY+C G L+G S C +G W + P C
Sbjct: 7 CKTPPDPVNGMVHVITDI-QVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PPIC 64
Query: 77 VR 78
R
Sbjct: 65 QR 66
Score = 38.4 bits (89), Expect = 4e-05
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 16 EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DK 64
+ C P A+ + +N E G+V TY C G FEL+G C D+
Sbjct: 65 QRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQ 124
Query: 65 TGQWMPEGIPFCV 77
G W P C+
Sbjct: 125 VGIWSGP-APQCI 136
>3r62_A H factor 1, complement factor H; immunity, repeating sushi
domain, regulator of C activation, C3D, immune system;
1.52A {Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A
3kxv_A 3kzj_A 2xqw_C
Length = 129
Score = 43.4 bits (102), Expect = 4e-07
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 16 EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
E+ +C P + I +P + Y C+ ++L G R C + GQW P
Sbjct: 3 EFGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQWSEP--P 59
Query: 75 FCVRWCT 81
C+ C
Sbjct: 60 KCLHPCV 66
Score = 38.1 bits (88), Expect = 5e-05
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSP----GTVATYACERGFELLGPSRRVCDKTGQ 67
P+ ++ + G + C+RG+ L S +
Sbjct: 59 PKCLHPCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWD 118
Query: 68 WMPEGIPFCVR 78
E P C +
Sbjct: 119 GKLE-YPTCAK 128
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 44.5 bits (104), Expect = 5e-07
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
++Y C P P + + G T+AC+ F + G C W P
Sbjct: 64 EYFNKYSSCPEPIVP-GGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPT 122
Query: 72 GIPFCVRWC 80
+P CV
Sbjct: 123 RLPTCVSVF 131
Score = 44.2 bits (103), Expect = 8e-07
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
C P + I + + ++ GTV Y+C F L+G +C +
Sbjct: 4 CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGT 55
>3sw0_X H factor 1, complement factor H; innate immune response, sushi
domains, cofactor in the inact of C3B, C3B, human
plasma, immune system; 1.80A {Homo sapiens}
Length = 188
Score = 44.2 bits (104), Expect = 5e-07
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 19 ECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
+C P + I +P + Y C+ ++L G R C + GQW P C+
Sbjct: 65 KCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQW--SEPPKCL 121
Query: 78 RWCT 81
C
Sbjct: 122 HPCV 125
Score = 41.5 bits (97), Expect = 4e-06
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 20 CRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
C P ++ IV + G Y C +E+ G +C P
Sbjct: 5 CVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEP 56
Score = 41.5 bits (97), Expect = 4e-06
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 20 CRFPGAPAHSSIVFSN-----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
+ +I G + C+RG+ L S + E P
Sbjct: 125 VISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLE-YP 183
Query: 75 FCVR 78
C +
Sbjct: 184 TCAK 187
>2uwn_A H factor 1, human complement factor H; alternative splicing,
sucrose octasulphate, AGE-related macular degeneration,
complement alternate pathway; HET: SCR; 2.35A {Homo
sapiens} PDB: 2v8e_A* 2ic4_A 2w80_A 2w81_A 2jgw_A 2jgx_A
Length = 187
Score = 43.8 bits (103), Expect = 5e-07
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
P V +C FP + G AC G+ L V W P
Sbjct: 62 PAVPCLRKCYFP-YLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPT 120
Query: 72 GIPFCVR 78
P C+R
Sbjct: 121 --PRCIR 125
Score = 37.6 bits (87), Expect = 1e-04
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGP--SRRVCDKTGQWM 69
+ + + I S T + A Y C+ G+ S + W
Sbjct: 122 RCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDGWS 181
Query: 70 PEGIPFCV 77
+ P C+
Sbjct: 182 AQ--PTCI 187
Score = 34.5 bits (79), Expect = 0.001
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 20 CRFP----GAPAHSSIVFSNETLSPGTVATYACERGFELLGPS---RRVCDKTGQWMPEG 72
C +P G H ++ ++ G +Y C+ FE S C + G W P
Sbjct: 6 CDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG-WSPA- 63
Query: 73 IPFCVRWC 80
C+R C
Sbjct: 64 -VPCLRKC 70
>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1
Length = 128
Score = 42.9 bits (101), Expect = 6e-07
Identities = 11/61 (18%), Positives = 15/61 (24%), Gaps = 4/61 (6%)
Query: 20 CRFPGAPAHSSIVFSN--ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C+ P + + GT Y C + S C W C
Sbjct: 6 CQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGRPFSIT-CLDNLVWSSP-KDVCK 63
Query: 78 R 78
R
Sbjct: 64 R 64
Score = 42.1 bits (99), Expect = 1e-06
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPF 75
C+ P P + + + G+ TY+C G L+G S C T W + P
Sbjct: 66 SCKTPPDPVNGMVHVITDI-QVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PPI 123
Query: 76 CVR 78
C R
Sbjct: 124 CQR 126
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 44.0 bits (103), Expect = 8e-07
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 20 CRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
C FP S + + G T CE G+ L G C +W P + C
Sbjct: 1868 CSFPLFMNGISKELEMKKVYHYGDYVTLKCEDGYTLEGSPWSQCQADDRWDPP-LAKCTS 1926
Query: 79 WC 80
Sbjct: 1927 RA 1928
Score = 42.5 bits (99), Expect = 3e-06
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
P+ +C P + + S V + C+ GF + GP R C +W PE
Sbjct: 189 PQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE 248
Query: 72 GIPFCVRWCTGL 83
+P C R C
Sbjct: 249 -LPSCSRVCQPP 259
Score = 42.5 bits (99), Expect = 3e-06
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
P +C P + + S + + C+ GF ++G C G+W P+
Sbjct: 1542 PRCISTNKCTAPEVENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPK 1601
Query: 72 GIPFCVRWCTGLG 84
+P C R C
Sbjct: 1602 -LPHCSRVCQPPP 1613
Score = 42.1 bits (98), Expect = 4e-06
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
P+ +C P + + S V + C+ GF + GP R C +W PE
Sbjct: 639 PQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE 698
Query: 72 GIPFCVRWC 80
+P C R C
Sbjct: 699 -LPSCSRVC 706
Score = 41.7 bits (97), Expect = 5e-06
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
P+ +C P + + S V + C+ GF + GP R C +W PE
Sbjct: 1089 PQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE 1148
Query: 72 GIPFCVRWC 80
+P C R C
Sbjct: 1149 -LPSCSRVC 1156
Score = 40.9 bits (95), Expect = 9e-06
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
P + + SPG Y+CE ++L G + C G W PE P C
Sbjct: 1610 QPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPE-APRCTV 1667
Score = 40.9 bits (95), Expect = 1e-05
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
P + SPG Y+CE G++L G + C G W P P C
Sbjct: 707 QPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPA-APTCEVK 765
Query: 80 C 80
Sbjct: 766 S 766
Score = 40.6 bits (94), Expect = 1e-05
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
E+S C P + + + +L PG +Y C+ G+ L+G C G W
Sbjct: 1800 ELSVPAACPHPPKIQNGHYIGGHVSLYLPGMTISYICDPGYLLVGKGFIFCTDQGIWSQL 1859
Query: 72 GIPFCVR 78
+C
Sbjct: 1860 -DHYCKE 1865
Score = 40.2 bits (93), Expect = 2e-05
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
CR P P + + + + G+ Y+C +G+ L+G S C +G
Sbjct: 63 CRNPPDPVNGMVH-VIKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDT 110
Score = 39.4 bits (91), Expect = 3e-05
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 19 ECRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
+C P + GT Y C G+ P +C K W C
Sbjct: 1 QCNAPEWLPFARPTNLTDEFEFPIGTYLNYECRPGYS-GRPFSIICLKNSVWTGA-KDRC 58
Query: 77 VR 78
R
Sbjct: 59 RR 60
Score = 39.0 bits (90), Expect = 4e-05
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
+ + C P P + + + +T G+ Y+C GF L+G C +G +
Sbjct: 1408 EDNCRRKSCGPPPEPFNGMVHINTDT-QFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTW 1466
Query: 72 GIPFCV 77
+
Sbjct: 1467 DKKAPI 1472
Score = 39.0 bits (90), Expect = 5e-05
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
P + SPG Y+CE G++L G + C G W P P C
Sbjct: 257 QPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPA-APTCEVK 315
Query: 80 C 80
Sbjct: 316 S 316
Score = 38.2 bits (88), Expect = 9e-05
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
P + SPG Y+CE G++L G + C G W PE P C
Sbjct: 1157 QPPPEILHGEHTPSHQDNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPE-APRCAV 1214
Score = 35.9 bits (82), Expect = 6e-04
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM--PEGIPFCV 77
C+ P P + V + G+ Y+C G L+G S C +G P C
Sbjct: 513 CKTPPDPVNGM-VHVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQ 571
Query: 78 RWCTG 82
R G
Sbjct: 572 RIPCG 576
Score = 35.5 bits (81), Expect = 8e-04
Identities = 13/58 (22%), Positives = 18/58 (31%)
Query: 11 LPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
E + C + V L G + C+ GF+L G S C G
Sbjct: 308 AAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGME 365
Score = 34.4 bits (78), Expect = 0.002
Identities = 12/53 (22%), Positives = 16/53 (30%)
Query: 16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
+ C V L G ++ C+ GF L G S C G
Sbjct: 1213 AVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDEGFRLKGSSVSHCVLVGMR 1265
Score = 34.4 bits (78), Expect = 0.002
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
+V + + C+ P P + + + G+ Y+C G L+G S C +G
Sbjct: 955 KDVCKRKSCKTPPDPVNGMVHVITDI-QVGSRINYSCTTGHRLIGHSSAECILSGNT 1010
Score = 34.0 bits (77), Expect = 0.003
Identities = 12/49 (24%), Positives = 16/49 (32%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
C + V L G + C+ GF+L G S C G
Sbjct: 767 CDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGME 815
Score = 32.1 bits (72), Expect = 0.013
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 11 LPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQ 67
P + F G H ++ L G ++ C+ GF L G S C
Sbjct: 1662 APRCTVKSCDDFLGQLPHGRVLLPL-NLQLGAKVSFVCDEGFRLKGRSASHCVLAGMKAL 1720
Query: 68 WMPEGIPFCVR 78
W +P C +
Sbjct: 1721 WNSS-VPVCEQ 1730
Score = 31.7 bits (71), Expect = 0.018
Identities = 9/72 (12%), Positives = 15/72 (20%), Gaps = 1/72 (1%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
+ + + A + GT Y C + P C W
Sbjct: 447 GILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYECRPEY-YGRPFSITCLDNLVWSSPK 505
Query: 73 IPFCVRWCTGLG 84
+ C
Sbjct: 506 DVCKRKSCKTPP 517
Score = 31.3 bits (70), Expect = 0.029
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC-- 62
P + + C P A+ + +N E G+V TY C G FEL+G C
Sbjct: 1017 PPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTS 1076
Query: 63 --DKTGQWMPEGIPFCVRWC 80
D+ G W +
Sbjct: 1077 NDDQVGIWSGPAPQCIIPNK 1096
Score = 30.5 bits (68), Expect = 0.049
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DKTGQW 68
C P + + +N E G+V TY C G FEL+G C D+ G W
Sbjct: 125 CGLPPTITNGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIW 184
Query: 69 MPEGIPFCVR 78
P C+
Sbjct: 185 SGP-APQCII 193
Score = 30.2 bits (67), Expect = 0.068
Identities = 9/69 (13%), Positives = 15/69 (21%), Gaps = 1/69 (1%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
+ + + A + GT Y C + P C W
Sbjct: 897 GILGHCQAPDHFLFAKLKTQTNASDFPIGTSLKYECRPEY-YGRPFSITCLDNLVWSSPK 955
Query: 73 IPFCVRWCT 81
+ C
Sbjct: 956 DVCKRKSCK 964
Score = 29.8 bits (66), Expect = 0.097
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 10/73 (13%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACE------RGFELLGPSRRVCDKTGQWMPEG 72
C P A + + + G +Y C+ F L+G S C
Sbjct: 1280 CPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTSDPHGNGVW 1339
Query: 73 ---IPFCVRWCTG 82
P C
Sbjct: 1340 SSPAPRCELSVRA 1352
Score = 29.4 bits (65), Expect = 0.13
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 1/65 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
A +I ++ GT Y C G+ C + W +
Sbjct: 1357 TPEQFPFASPTIPINDFEFPVGTSLNYECRPGY-FGKMFSISCLENLVWSSVEDNCRRKS 1415
Query: 80 CTGLG 84
C
Sbjct: 1416 CGPPP 1420
Score = 29.0 bits (64), Expect = 0.16
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACER------GFELLGPSRRVCDKTGQWM 69
C P + E G Y C+ F+L+G S C Q
Sbjct: 830 CPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGN 886
Score = 29.0 bits (64), Expect = 0.17
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DKTGQW 68
C P ++ +N + GTV TY C G FEL+G C D+ G W
Sbjct: 1478 CEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTGPDGEQLFELVGERSIYCTSKDDQVGVW 1537
Query: 69 MPEGIPFCVR 78
P C+
Sbjct: 1538 SSP-PPRCIS 1546
Score = 27.5 bits (60), Expect = 0.52
Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 10/73 (13%)
Query: 20 CRFPGAPAHSSIVFSNETLSP-GTVATYACER------GFELLGPSRRVCDKTGQWMPE- 71
C P + + P G Y C+ F+L+G S C Q
Sbjct: 380 CPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVW 439
Query: 72 --GIPFCVRWCTG 82
P C
Sbjct: 440 SSPAPRCGILGHC 452
Score = 27.5 bits (60), Expect = 0.61
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC-- 62
P + + C P A+ + +N E G+V TY C G FEL+G C
Sbjct: 567 PPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTS 626
Query: 63 --DKTGQW 68
D+ G W
Sbjct: 627 NDDQVGIW 634
Score = 26.7 bits (58), Expect = 1.1
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACER------GFELLGPSRRVCDKTGQW 68
C P A + + + G +YAC+ F L+G S C Q
Sbjct: 1733 CPNPPAILNGRHTGTPFGDIPYGKEISYACDTHPDRGMTFNLIGESSIRCTSDPQG 1788
>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system;
NMR {Homo sapiens}
Length = 133
Score = 42.2 bits (99), Expect = 1e-06
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
CR PG + + + S G+ ++C GF L+G + C+ +
Sbjct: 65 RCRHPGELRNGQVEIKTDL-SFGSQIEFSCSEGFFLIGSTTSRCEVQDRG 113
Score = 42.2 bits (99), Expect = 1e-06
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 20 CRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELLGPSR-RVCDKTGQWMPEGIPF 75
C P + ++ + + GT Y C G+ ++ C+ G+W+ F
Sbjct: 3 CGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYN--TF 60
Query: 76 CVR 78
C+
Sbjct: 61 CIY 63
>2qy0_A Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein,
hydrolase, hydroxylation, immune response; 2.60A {Homo
sapiens}
Length = 159
Score = 41.7 bits (97), Expect = 3e-06
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 19 ECRFPGAPAHSSIVF-SNETLSPGTVATYACERGFELLGPSR------RVCDKTGQWMPE 71
C P +I+ C++G++L+ ++ VC G W
Sbjct: 4 ACPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRA 63
Query: 72 GIPFCVRWCTG 82
+P C G
Sbjct: 64 -MPRCKIKDCG 73
Score = 32.4 bits (73), Expect = 0.008
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 15/76 (19%)
Query: 20 CRFPGAPAHSSIVFSN--ETLSPGTVATYACERGFELL---------GPSRRVCDKTGQW 68
C P + ++ + Y C + + C G W
Sbjct: 72 CGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIW 131
Query: 69 MPEG----IPFCVRWC 80
E IP C+ C
Sbjct: 132 KNEQKGEKIPRCLPVC 147
>2yby_A Complement factor H; immune system, complement regulation, innate
immunity, infec; 1.58A {Mus musculus}
Length = 124
Score = 39.1 bits (91), Expect = 2e-05
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL-GPSRRVCDKTGQWMP 70
PEV +C F + + + G C G+ L G C + G W P
Sbjct: 61 PEVPCVRKCVFHY-VENGDSAYWEKVYVQGQSLKVQCYNGYSLQNGQDTMTCTENG-WSP 118
Query: 71 EGIPFCVR 78
P C+R
Sbjct: 119 P--PKCIR 124
Score = 32.9 bits (75), Expect = 0.004
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 20 CRFP----GAPAHSSIVFSNETLSPGTVATYACERGFELLGPS---RRVCDKTGQWMPEG 72
C FP G + + N +S G +Y C+ GF C G W PE
Sbjct: 5 CEFPQFKYGRLYYEESLRPNFPVSIGNKYSYKCDNGFSPPSGYSWDYLRCTAQG-WEPE- 62
Query: 73 IPFCVRWC 80
CVR C
Sbjct: 63 -VPCVRKC 69
>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 86
Score = 35.7 bits (82), Expect = 2e-04
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 20 CRFPGAPAHSSIVF--SNETLSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEG--- 72
C P + + + V Y+CE F + + VCD G W
Sbjct: 8 CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWTSSKGEK 67
Query: 73 -IPFCVRWC 80
+P C C
Sbjct: 68 SLPVCEPVC 76
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 37.6 bits (86), Expect = 2e-04
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 12 PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
PE+ C P P + I + G +C GFE +G C G W
Sbjct: 615 PEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQG 674
Query: 72 GIPFCVRWC 80
C R
Sbjct: 675 D-VECQRTE 682
Score = 34.1 bits (77), Expect = 0.003
Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
C P +I G C +GF + GPSR C W P
Sbjct: 683 CIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQG-NSWTPP 733
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B)
receptor, CIS-trans isomerization, CCP module, sushi
domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB:
1ss2_A
Length = 68
Score = 32.4 bits (73), Expect = 0.002
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 40 PGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
G + C+ F L+G SR VC + GQW P C
Sbjct: 31 DGARVEFRCDPDFHLVGSSRSVCSQ-GQWSTP-KPHCQ 66
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 32.7 bits (74), Expect = 0.007
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRR------VCDKTGQW 68
+ EC P H I S +C+ G+++L + C K G W
Sbjct: 277 AAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTW 336
Query: 69 MPEGIPFC 76
IP C
Sbjct: 337 -SNKIPTC 343
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 32.4 bits (74), Expect = 0.008
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSR------RVCDKTGQW 68
S C +P AP + + + CE G+ELL VC K G W
Sbjct: 12 STAHACPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSW 71
Score = 26.6 bits (59), Expect = 0.95
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 20 CRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEGIPF 75
C P + + + V Y+CE F + + VC+ G W
Sbjct: 83 CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEK 142
Query: 76 CVRWC 80
+ C
Sbjct: 143 SLPVC 147
>2b5i_D Interleukin-2 receptor alpha chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 3nfp_I
3iu3_I 1z92_B 2erj_A*
Length = 217
Score = 25.7 bits (55), Expect = 2.1
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 13 EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL--GPSRRVCDKT 65
+ S CR P + + G + Y C +G+ L GP+ VC T
Sbjct: 97 QASLPGHCREPPPWENEAT-ERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMT 150
>3tv9_A Putative peptide maturation protein; structural genomics, center
for structural genomics of infec diseases, csgid,
alpha-beta, cytosol; 2.50A {Shigella flexneri}
Length = 457
Score = 25.3 bits (56), Expect = 2.5
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 27 AHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
A++ ++ +P V R L P R++ T + P
Sbjct: 216 AYTIGRAMSDLQTPEWVGADCARRTLSRLSP-RKL--STMK-AP 255
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural
genomics consortium, SGC, HI demethylase,
oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Length = 489
Score = 24.5 bits (52), Expect = 6.9
Identities = 3/42 (7%), Positives = 7/42 (16%)
Query: 38 LSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
S + + + G+ P
Sbjct: 83 FSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALP 124
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family,
phosphinothricin, methionine sulfone, methionine
sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A
2j8n_A 2j8r_A* 1yvo_A
Length = 172
Score = 23.7 bits (52), Expect = 9.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 51 GFELLGPSRRVCDKTGQW 68
GFE+ G +V K G+W
Sbjct: 138 GFEISGQMPQVGQKFGRW 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.477
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,373,451
Number of extensions: 64618
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 168
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)