RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6641
(87 letters)
>d2ok5a3 g.18.1.1 (A:77-137) Complement factor B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 51.1 bits (122), Expect = 4e-11
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
C P + + + ++ C G+ L G + R C G+W + C
Sbjct: 2 CPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQ-TAIC 57
>d1ly2a2 g.18.1.1 (A:67-129) Complement receptor 2, cr2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 51.1 bits (122), Expect = 4e-11
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 17 YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
Y C P P I S G T+AC+ F + G C W P +P C
Sbjct: 2 YSSCPEPIVPGGYKIRGST-PYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTC 60
Query: 77 VR 78
V
Sbjct: 61 VS 62
>d2ok5a2 g.18.1.1 (A:138-199) Complement factor B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 48.3 bits (115), Expect = 6e-10
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
C PG P + TY C RG L G RR C + G W P C
Sbjct: 3 CSNPGIPIGTRK--VGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGT-EPSCQDS 59
Query: 80 CT 81
Sbjct: 60 FM 61
>d2o39c2 g.18.1.1 (C:63-126) CD46 (membrane cofactor protein, MCP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 47.7 bits (113), Expect = 1e-09
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIP 74
E C + P + V +N T G + C G+ L+G C W + P
Sbjct: 1 ETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGK-PP 59
Query: 75 FCVR 78
C +
Sbjct: 60 ICEK 63
>d1hcca_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human
(Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 46.9 bits (111), Expect = 2e-09
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C+ P +H + +++ G TY C GF + GP+ C +W P C+
Sbjct: 5 CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC-LGEKW--SHPPSCI 59
>d1h03p2 g.18.1.1 (P:67-129) Complement decay-accelerating factor
(Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 46.9 bits (111), Expect = 2e-09
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
C P + I + TYAC +GF ++G C + G+W P C
Sbjct: 3 CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPEC 61
>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia
virus [TaxId: 10245]}
Length = 59
Score = 46.5 bits (110), Expect = 2e-09
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C P + S + C+ G++L G S C W PE +P CV
Sbjct: 3 CPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPE-LPKCV 59
>d1quba4 g.18.1.1 (A:184-243) beta2-glycoprotein I {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 46.5 bits (110), Expect = 3e-09
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 19 ECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
+C FP P + + + TL AT+ C G+ L GP C K G W +P C
Sbjct: 2 KCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNW--SAMPSC 58
>d1g40a3 g.18.1.1 (A:127-184) Complement control protein {Vaccinia
virus [TaxId: 10245]}
Length = 58
Score = 45.3 bits (107), Expect = 6e-09
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
C+ P + ++ + + G+V TY+C G+ L+G S +C G+W P C
Sbjct: 3 CQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEW--SDPPTC 56
>d1quba2 g.18.1.1 (A:63-120) beta2-glycoprotein I {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 45.3 bits (107), Expect = 8e-09
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
C F G + ++ T +++C GF L G C + G+W PE +P C
Sbjct: 3 CPFAGILENGAV--RYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPE-LPVC 56
>d1quba3 g.18.1.1 (A:121-183) beta2-glycoprotein I {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 44.3 bits (104), Expect = 2e-08
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 20 CRFPGAPAHSSIVFSN----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF 75
C P P +++ A + C + G C G W +P
Sbjct: 3 CPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNW--TKLPE 60
Query: 76 C 76
C
Sbjct: 61 C 61
>d1ly2a1 g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 43.5 bits (102), Expect = 5e-08
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPF 75
C P + I + + ++ GTV Y+C F L+G +C G W P
Sbjct: 4 CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APK 62
Query: 76 C 76
C
Sbjct: 63 C 63
>d1h03p1 g.18.1.1 (P:5-66) Complement decay-accelerating factor
(Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 43.0 bits (101), Expect = 7e-08
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
C PG + I G +++C G++L G + C +G QW +P C
Sbjct: 3 CPNPGEIRNGQIDVPGGI-LFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPEC 60
>d1g40a2 g.18.1.1 (A:65-126) Complement control protein {Vaccinia
virus [TaxId: 10245]}
Length = 62
Score = 41.9 bits (98), Expect = 2e-07
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPF 75
C P + + + G+ TY+C G+ L+G S+ C + W PE P
Sbjct: 3 CPSPRDIDNGQLDIGG--VDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPE-API 59
Query: 76 C 76
C
Sbjct: 60 C 60
>d1quba1 g.18.1.1 (A:1-62) beta2-glycoprotein I {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 41.7 bits (97), Expect = 2e-07
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL-GPSRRVCDKTGQWMPEGIPFCV 77
C P S++V PG TY+C+ G+ G + +C TG W C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPIN-TLKCT 61
>d1hfia_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 41.5 bits (97), Expect = 3e-07
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 20 CRFPGAPAHSSIVFSN---ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
C P H +I S E+ + GT +Y CE GF + + C G+W P C
Sbjct: 5 CSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTC-YMGKW--SSPPQC 61
>d2o39c1 g.18.1.1 (C:1-62) CD46 (membrane cofactor protein, MCP)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 40.9 bits (95), Expect = 4e-07
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 20 CRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEGIPFC 76
C P ++ + G Y C++G+ + + +CD+ W+P C
Sbjct: 1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDAC 60
Query: 77 VR 78
R
Sbjct: 61 YR 62
>d1ppqa_ g.18.1.1 (A:) Complement receptor 1, cr1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 40.8 bits (95), Expect = 5e-07
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
C+ P P + + + G+ TY+C G L+G S C T W + P C
Sbjct: 7 CKTPPDPVNGMVHVITDI-QVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PPIC 64
Query: 77 VR 78
R
Sbjct: 65 QR 66
>d1srza_ g.18.1.1 (A:) GABA-B receptor 1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 68
Score = 36.8 bits (85), Expect = 2e-05
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 20 CRFPGAPAHSSIVFSNETLS--PGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
+ + + + L G + C+ F L+G SR VC GQW P C
Sbjct: 9 SKSYLTLENGKVFLTGGDLPALDGARVEFRCDPDFHLVGSSRSVC-SQGQWSTP-KPHC 65
>d1ok3a2 g.18.1.1 (A:65-128) Complement decay-accelerating factor
(Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 36.3 bits (83), Expect = 3e-05
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 20 CRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEGIP 74
C P +S+ + GTV Y C G+ + C + +W +
Sbjct: 2 CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA-VE 60
Query: 75 FCVR 78
FC +
Sbjct: 61 FCKK 64
>d1gkga2 g.18.1.1 (A:1023-1092) Complement receptor 1, cr1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 35.1 bits (80), Expect = 9e-05
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DKTGQW 68
C P A+ + +N E G+V TY C G FEL+G C D+ G W
Sbjct: 3 CGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIW 62
Query: 69 MPEGIPFCV 77
P C+
Sbjct: 63 SGP-APQCI 70
>d1elva2 g.18.1.1 (A:342-409) Complement C1S protease domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 34.7 bits (79), Expect = 1e-04
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGF---ELLGPSRRVCDKTGQWMPE 71
+C P + + + T G+V Y CE + E G C G W+ E
Sbjct: 2 DCGIPESIENGKVEDPEST-LFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNE 56
>d1gpza2 g.18.1.1 (A:290-357) Complement C1R protease domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 34.0 bits (77), Expect = 2e-04
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 19 ECRFPGAPAHSSIV-FSNETLSPGTVATYACERGFELLGPS------RRVCDKTGQWMPE 71
+C P +I+ C++G++L+ + VC G W
Sbjct: 2 KCPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRA 61
Query: 72 GIPFC 76
+P C
Sbjct: 62 -MPRC 65
>d1gkna1 g.18.1.1 (A:897-960) Complement receptor 1, cr1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 33.2 bits (75), Expect = 4e-04
Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 4/61 (6%)
Query: 20 CRFPGAPAHSSIV--FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
C+ P + + + GT Y C + S W C
Sbjct: 6 CQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGRPFSITCL-DNLVWSSP-KDVCK 63
Query: 78 R 78
R
Sbjct: 64 R 64
>d1q3xa2 g.18.1.1 (A:366-440) Mannan-binding lectin serine
protease 2 (MASP-2) domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 32.8 bits (74), Expect = 7e-04
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 20 CRFPGAPAHSSIVFS--NETLSPGTVATYACERGFE--LLGPSRRVCDKTGQWMPEG--- 72
C P + + + V Y+CE F + + VC+ G W
Sbjct: 1 CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEK 60
Query: 73 -IPFCVRWC 80
+P C C
Sbjct: 61 SLPVCEPVC 69
>d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 30.6 bits (69), Expect = 0.004
Identities = 11/33 (33%), Positives = 11/33 (33%)
Query: 38 LSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
L G Y C GF R C TG W
Sbjct: 19 LQEGQALEYVCPSGFYPYPVQTRTCRSTGSWST 51
>d2z3qb1 g.18.1.1 (B:1-78) Interleukin-15 receptor subunit alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 30.5 bits (68), Expect = 0.007
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRV--CDKTGQW 68
C P + H+ I + +L + Y C GF+ + + C
Sbjct: 3 CPPPMSVEHADIWVKSYSL--YSRERYICNSGFKRKAGTSSLTECVLNKAT 51
>d1zjka2 g.18.1.1 (A:311-363) Complement C1R protease domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 53
Score = 29.6 bits (66), Expect = 0.009
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 39 SPGTVATYACERGFE------LLGPSRRVCDKTGQWMPEGIPFC 76
+ CE G+E L VC K G W +P C
Sbjct: 9 ILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRP-MPAC 51
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga
maritima [TaxId: 2336]}
Length = 229
Score = 24.3 bits (51), Expect = 2.5
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 28 HSSIVFSNETLSPGTVATYACERGFELLG 56
H S+ L G V + G +++
Sbjct: 9 HVHTNMSDGHLPLGEVVDLFGKHGVDVVS 37
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 352
Score = 23.9 bits (51), Expect = 3.3
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 6 CHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLS 39
C + V +Y EC P H ++V E +
Sbjct: 236 CTDGRRANVMDYRECNLAEVPTH-AVVVRPEKAN 268
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 23.1 bits (49), Expect = 6.9
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 41 GTVATYACERGFELLGPSRRVCDKTGQWM-PEGIPF 75
G VA A ++ EL + + G PEGI
Sbjct: 45 GNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITT 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.477
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,617
Number of extensions: 13634
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 33
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)