BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6642
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QCR|E Chain E, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
pdb|1BGY|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|Q Chain Q, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|E Chain E, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|E Chain E, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|E Chain E, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|E Chain E, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|EE Chain e, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 196
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 119/194 (61%), Positives = 151/194 (77%), Gaps = 4/194 (2%)
Query: 3 AHSDIRTPDFSKYRR----DRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFIS 58
+H+DI+ PDFS YRR D + RK F+Y++ ++V AK+VV+QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 59 SMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDP 118
SMSASADVLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHRT+KEID E +SQLRDP
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDP 120
Query: 119 QADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNM 178
Q D +RVK P W+++IG+CTHLGCVPIANAGD+GGYYCPCHGSHYDASGRIRKGPAP N+
Sbjct: 121 QHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 180
Query: 179 EVPPYQFGDEGILI 192
EVP Y+F + ++I
Sbjct: 181 EVPSYEFTSDDMVI 194
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Query: 196 AHSDIRTPDFSKYRR----DRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFIS 251
+H+DI+ PDFS YRR D + RK F+Y++ ++V AK+VV+QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 252 SMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
SMSASADVLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHR
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHR 101
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 117/194 (60%), Positives = 148/194 (76%), Gaps = 5/194 (2%)
Query: 4 HSDIRTPDFSKYRR----DRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISS 59
H+D+ PDFS YRR D RK F+Y++ + V AK+VV QFISS
Sbjct: 2 HNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISS 61
Query: 60 MSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQ 119
+SASADVLA++ IE+ L+ IPEG++V FKWRGKPLF+RHRTQ EI+ E ++S+LRDPQ
Sbjct: 62 LSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQ 121
Query: 120 ADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNME 179
D DRVK P W++++G+CTHLGCVPIAN+GD+GGYYCPCHGSHYDASGRIRKGPAP N+E
Sbjct: 122 HDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLE 181
Query: 180 VPPYQF-GDEGILI 192
VP YQF GD+ +++
Sbjct: 182 VPTYQFVGDDLVVV 195
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 4/100 (4%)
Query: 197 HSDIRTPDFSKYRR----DRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISS 252
H+D+ PDFS YRR D RK F+Y++ + V AK+VV QFISS
Sbjct: 2 HNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISS 61
Query: 253 MSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+SASADVLA++ IE+ L+ IPEG++V FKWRGKPLF+RHR
Sbjct: 62 LSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHR 101
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 196
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 119/194 (61%), Positives = 152/194 (78%), Gaps = 4/194 (2%)
Query: 3 AHSDIRTPDFSKYRR--DRNPDKGQEET--QRKAFTYMIAGGSSVVGMVCAKSVVNQFIS 58
+H+DI+ P+FS YRR D K E+ RK F+Y++ +++ AK+VV QF+S
Sbjct: 1 SHTDIKVPNFSDYRRPPDDYSTKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVS 60
Query: 59 SMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDP 118
SMSASADVLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHRT+KEID E +SQLRDP
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDP 120
Query: 119 QADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNM 178
Q D +RVK P W+++IG+CTHLGCVPIANAGD+GGYYCPCHGSHYDASGRIRKGPAP N+
Sbjct: 121 QHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 180
Query: 179 EVPPYQFGDEGILI 192
EVP Y+F + ++I
Sbjct: 181 EVPSYEFTSDDMVI 194
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 73/101 (72%), Gaps = 4/101 (3%)
Query: 196 AHSDIRTPDFSKYRR--DRNPDKGQEET--QRKAFTYMIAGGSSVVGMVCAKSVVNQFIS 251
+H+DI+ P+FS YRR D K E+ RK F+Y++ +++ AK+VV QF+S
Sbjct: 1 SHTDIKVPNFSDYRRPPDDYSTKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVS 60
Query: 252 SMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
SMSASADVLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHR
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHR 101
>pdb|1EZV|E Chain E, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|E Chain E, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|P Chain P, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|E Chain E, Yeast Cytochrome Bc1 Complex
pdb|1P84|E Chain E, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|E Chain E, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|E Chain E, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|P Chain P, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|E Chain E, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|P Chain P, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 185
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 102/189 (53%), Positives = 137/189 (72%), Gaps = 7/189 (3%)
Query: 5 SDIRTPDFSKYRRDRN-PDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSAS 63
S RTP+F ++ N DKG +++ Y + G ++ AKS V FISSM+A+
Sbjct: 2 STYRTPNFDDVLKENNDADKG------RSYAYFMVGAMGLLSSAGAKSTVETFISSMTAT 55
Query: 64 ADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSD 123
ADVLAMA +EV+L IP G++V KW+GKP+FIRHRT EI + ++S L+DPQ D+D
Sbjct: 56 ADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDAD 115
Query: 124 RVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPY 183
RVKDP WL+++GICTHLGCVPI AGD+GG++CPCHGSHYD SGRIRKGPAP N+E+P Y
Sbjct: 116 RVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAY 175
Query: 184 QFGDEGILI 192
+F + +++
Sbjct: 176 EFDGDKVIV 184
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
Query: 198 SDIRTPDFSKYRRDRN-PDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSAS 256
S RTP+F ++ N DKG +++ Y + G ++ AKS V FISSM+A+
Sbjct: 2 STYRTPNFDDVLKENNDADKG------RSYAYFMVGAMGLLSSAGAKSTVETFISSMTAT 55
Query: 257 ADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
ADVLAMA +EV+L IP G++V KW+GKP+FIRHR
Sbjct: 56 ADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHR 91
>pdb|1RIE|A Chain A, Structure Of A Water Soluble Fragment Of The Rieske Iron-
Sulfur Protein Of The Bovine Heart Mitochondrial
Cytochrome Bc1-complex
Length = 129
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 109/127 (85%)
Query: 66 VLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRV 125
VLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHRT+KEID E +SQLRDPQ D +RV
Sbjct: 1 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERV 60
Query: 126 KDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQF 185
K P W+++IG+CTHLGCVPIANAGD+GGYYCPCHGSHYDASGRIRKGPAP N+EVP Y+F
Sbjct: 61 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEF 120
Query: 186 GDEGILI 192
+ ++I
Sbjct: 121 TSDDMVI 127
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 259 VLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
VLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHR
Sbjct: 1 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHR 34
>pdb|1ZRT|E Chain E, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|R Chain R, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 191
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 112/178 (62%), Gaps = 22/178 (12%)
Query: 30 RKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNLIPEGQSVTFKW 89
R+ F Y ++ G+V + V I+ M+ASADV AMA+I VD++ + G +T KW
Sbjct: 11 RRDFLYH---ATAATGVVVTGAAVWPLINQMNASADVKAMASIFVDVSAVEVGTQLTVKW 67
Query: 90 RGKPLFIRHRTQKEIDTEQNTNISQLRDPQADS------------------DRVKDPSWL 131
RGKP+FIR R +K+I+ ++ + LRD A++ D WL
Sbjct: 68 RGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWL 127
Query: 132 VIIGICTHLGCVPIAN-AGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDE 188
V++G+CTHLGCVP+ + +GD+GG++CPCHGSHYD++GRIRKGPAP N+++P F DE
Sbjct: 128 VMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDE 185
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 223 RKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNLIPEGQSVTFKW 282
R+ F Y ++ G+V + V I+ M+ASADV AMA+I VD++ + G +T KW
Sbjct: 11 RRDFLYH---ATAATGVVVTGAAVWPLINQMNASADVKAMASIFVDVSAVEVGTQLTVKW 67
Query: 283 RGKPLFIRHR 292
RGKP+FIR R
Sbjct: 68 RGKPVFIRRR 77
>pdb|2YIU|C Chain C, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|F Chain F, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 190
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 100/147 (68%), Gaps = 14/147 (9%)
Query: 56 FISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQL 115
++ M+ SADV A+A+I+VD++ + G +T KW GKP+FIR RT+ EI + ++ QL
Sbjct: 38 LVNQMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQL 97
Query: 116 RD-----------PQADSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHGS 161
D P D +R D + WLV+IG+CTHLGCVPI + AGD+GG++CPCHGS
Sbjct: 98 IDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGS 157
Query: 162 HYDASGRIRKGPAPTNMEVPPYQFGDE 188
HYD SGRIR+GPAP N+ +P +F D+
Sbjct: 158 HYDTSGRIRRGPAPQNLHIPVAEFLDD 184
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 249 FISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
++ M+ SADV A+A+I+VD++ + G +T KW GKP+FIR R
Sbjct: 38 LVNQMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRR 81
>pdb|2QJP|C Chain C, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|F Chain F, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|I Chain I, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|L Chain L, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 179
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 15/148 (10%)
Query: 56 FISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQL 115
I+ M+ SADV A+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL
Sbjct: 26 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 85
Query: 116 RDPQA------------DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHG 160
D A D +R D + WLV+ G+CTHLGCVPI +GD+GG++CPCHG
Sbjct: 86 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHG 145
Query: 161 SHYDASGRIRKGPAPTNMEVPPYQFGDE 188
SHYD++GRIRKGPAP N+ +P +F DE
Sbjct: 146 SHYDSAGRIRKGPAPENLPIPLAKFIDE 173
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 249 FISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
I+ M+ SADV A+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 26 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 69
>pdb|2FYN|C Chain C, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|F Chain F, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|I Chain I, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|L Chain L, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|O Chain O, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|R Chain R, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|F Chain F, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|I Chain I, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|L Chain L, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|O Chain O, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|R Chain R, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 187
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 98/148 (66%), Gaps = 15/148 (10%)
Query: 56 FISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQL 115
I+ M+ SADV A+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL
Sbjct: 34 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 93
Query: 116 RDPQA------------DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHG 160
D A D +R D + WLV+ G+CTHLGC PI +GD+GG++CPCHG
Sbjct: 94 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHG 153
Query: 161 SHYDASGRIRKGPAPTNMEVPPYQFGDE 188
SHYD++GRIRKGPAP N+ +P +F DE
Sbjct: 154 SHYDSAGRIRKGPAPENLPIPLAKFIDE 181
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 249 FISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
I+ M+ SADV A+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 34 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 77
>pdb|2QJK|C Chain C, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|F Chain F, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|I Chain I, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|L Chain L, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|O Chain O, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|R Chain R, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
Length = 179
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 98/148 (66%), Gaps = 15/148 (10%)
Query: 56 FISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQL 115
I+ M+ SADV A+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL
Sbjct: 26 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 85
Query: 116 RDPQA------------DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHG 160
D A D +R D + WLV+ G+CTHLGC PI +GD+GG++CPCHG
Sbjct: 86 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHG 145
Query: 161 SHYDASGRIRKGPAPTNMEVPPYQFGDE 188
SHYD++GRIRKGPAP N+ +P +F DE
Sbjct: 146 SHYDSAGRIRKGPAPENLPIPLAKFIDE 173
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 249 FISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
I+ M+ SADV A+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 26 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 69
>pdb|2NUK|A Chain A, Soluble Domain Of The Rieske Iron-Sulfur Protein From
Rhodobacter Sphaeroides
Length = 141
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 90/135 (66%), Gaps = 15/135 (11%)
Query: 69 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQA-------- 120
+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 121 ----DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHGSHYDASGRIRKGP 173
D +R D + WLV+ G+CTHLGCVPI +GD+GG++CPCHGSHYD++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGP 120
Query: 174 APTNMEVPPYQFGDE 188
AP N+ +P +F DE
Sbjct: 121 APENLPIPLAKFIDE 135
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 262 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 31
>pdb|2NVG|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 90/135 (66%), Gaps = 15/135 (11%)
Query: 69 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQA-------- 120
+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 121 ----DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHGSHYDASGRIRKGP 173
D +R D + WLV+ G+CTHLGCVPI +GD+GG++CPCHG+HYD++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGAHYDSAGRIRKGP 120
Query: 174 APTNMEVPPYQFGDE 188
AP N+ +P +F DE
Sbjct: 121 APENLPIPLAKFIDE 135
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 262 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 31
>pdb|2NVE|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 90/135 (66%), Gaps = 15/135 (11%)
Query: 69 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQA-------- 120
+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 121 ----DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHGSHYDASGRIRKGP 173
D +R D + WLV+ G+CTHLGCVPI +GD+GG++CPCHG+HYD++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGTHYDSAGRIRKGP 120
Query: 174 APTNMEVPPYQFGDE 188
AP N+ +P +F DE
Sbjct: 121 APENLPIPLAKFIDE 135
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 262 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 31
>pdb|2NUM|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 90/135 (66%), Gaps = 15/135 (11%)
Query: 69 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQA-------- 120
+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 121 ----DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHGSHYDASGRIRKGP 173
D +R D + WLV+ G+CTHLGCVPI +GD+GG++CPCHGSH+D++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHFDSAGRIRKGP 120
Query: 174 APTNMEVPPYQFGDE 188
AP N+ +P +F DE
Sbjct: 121 APENLPIPLAKFIDE 135
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 262 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 31
>pdb|2NVF|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 15/135 (11%)
Query: 69 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQA-------- 120
+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 121 ----DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHGSHYDASGRIRKGP 173
D +R D + WLV+ G+CTHLGCVPI +GD+GG++CPCHG HYD++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGCHYDSAGRIRKGP 120
Query: 174 APTNMEVPPYQFGDE 188
AP N+ +P +F DE
Sbjct: 121 APENLPIPLAKFIDE 135
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 262 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 31
>pdb|2NWF|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 90/135 (66%), Gaps = 15/135 (11%)
Query: 69 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQA-------- 120
+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL D A
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 121 ----DSDRVKDPS--WLVIIGICTHLGCVPIAN-AGDWGGYYCPCHGSHYDASGRIRKGP 173
D +R D + WLV+ G+CTHLGCVPI +GD+GG++CPCHGSH+D++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGP 120
Query: 174 APTNMEVPPYQFGDE 188
AP N+ +P +F DE
Sbjct: 121 APENLPIPLAKFIDE 135
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 262 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 31
>pdb|1VF5|D Chain D, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|D Chain D, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
Length = 179
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 108 QNTNISQLRDPQADSDRV------KDPSWLV-----------IIGICTHLGCVPIANAGD 150
N +S+ + DRV DP+++V I +CTHLGCV NA +
Sbjct: 62 NNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAE 121
Query: 151 WGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSDIRT 202
+ CPCHGS YD +GR+ +GPAP ++ + D+ I++ +D RT
Sbjct: 122 -NKFKCPCHGSQYDETGRVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRT 172
>pdb|2E74|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|D Chain D, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 179
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 108 QNTNISQLRDPQADSDRV------KDPSWLV-----------IIGICTHLGCVPIANAGD 150
N +S+ + DRV DP+++V I +CTHLGCV NA +
Sbjct: 62 NNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAE 121
Query: 151 WGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSDIRT 202
+ CPCHGS YD +G++ +GPAP ++ + D+ I++ +D RT
Sbjct: 122 -NKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRT 172
>pdb|2ZT9|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Nostoc Sp. Pcc 7120
pdb|4H44|D Chain D, 2.70 A Cytochrome B6f Complex Structure From Nostoc Pcc
7120
Length = 179
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 133 IIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILI 192
I +CTHLGCV NA + + CPCHGS YDA+G++ +GPAP ++ + + ++ I++
Sbjct: 104 INAVCTHLGCVVPWNAAE-NKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVL 162
Query: 193 RMLAHSDIRT 202
+D RT
Sbjct: 163 TSWTETDFRT 172
>pdb|1RFS|A Chain A, Rieske Soluble Fragment From Spinach
Length = 139
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 127 DPSWLV-----------IIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAP 175
DP++LV I +CTHLGCV NA + + CPCHGS Y+ GR+ +GPAP
Sbjct: 46 DPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAE-NKFICPCHGSQYNNQGRVVRGPAP 104
Query: 176 TNMEVPPYQFGDEGILIRMLAHSDIRT 202
++ + D ++ +D RT
Sbjct: 105 LSLALAHCDVDDGKVVFVPWTETDFRT 131
>pdb|1Q90|C Chain C, Structure Of The Cytochrome B6f (Plastohydroquinone :
Plastocyanin Oxidoreductase) From Chlamydomonas
Reinhardtii
Length = 127
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 127 DPSWLVIIG-----------ICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAP 175
DP++L++ +CTHLGCV A + + CPCHGS Y+A G++ +GPAP
Sbjct: 34 DPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAE-NKFKCPCHGSQYNAEGKVVRGPAP 92
Query: 176 TNMEVPPYQFGDEGIL-IRMLAHSDIRT 202
++ + + G++ +D RT
Sbjct: 93 LSLALAHCDVAESGLVTFSTWTETDFRT 120
>pdb|3AZC|A Chain A, Crystal Structure Of The Soluble Part Of Cytochrome B6f
Complex Iron- Sulfur Subunit From Thermosynechococcus
Elongatus Bp-1
Length = 133
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 135 GICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEV 180
+CTHLGCV N + + CPCHGS YD++G++ +GPAP ++ +
Sbjct: 59 AVCTHLGCVVPWNVSE-NKFICPCHGSQYDSTGKVVRGPAPLSLAL 103
>pdb|3FOU|A Chain A, Low Ph Structure Of The Rieske Protein From Thermus
Thermophilus At 2.1 A
pdb|3FOU|B Chain B, Low Ph Structure Of The Rieske Protein From Thermus
Thermophilus At 2.1 A
Length = 156
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 108 QNTNISQLRDPQADSDRVKDPSWLVIIG---ICTHLGCVPIANAGDWGGYYCPCHGSHYD 164
+NT + DP+ + V + ++ +CTHLGC+ D CPCHG YD
Sbjct: 55 KNTLLVARFDPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYD 114
>pdb|1NYK|A Chain A, Crystal Structure Of The Rieske Protein From Thermus
Thermophilus
pdb|1NYK|B Chain B, Crystal Structure Of The Rieske Protein From Thermus
Thermophilus
Length = 165
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 108 QNTNISQLRDPQADSDRVKDPSWLVIIG---ICTHLGCVPIANAGDWGGYYCPCHGSHYD 164
+NT + DP+ + V + ++ +CTHLGC+ D CPCHG YD
Sbjct: 55 KNTLLVARFDPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYD 114
>pdb|1WQL|A Chain A, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 459
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 66/185 (35%), Gaps = 24/185 (12%)
Query: 124 RVKDPSWLVIIGICTHLGC-VPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTN----- 177
R KD S V + C H G + ++ G+ + C HG YD +G + P
Sbjct: 88 RQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVPYEKEAFCDK 147
Query: 178 ---------MEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRDRNPDKGQEETQRKAFTY 228
+ P Q + + A+ D PD Y D P + +A T
Sbjct: 148 KEGDCGFDKADWGPLQARVDTYKGLIFANWDTEAPDLKTYLSDATPYMDVMLDRTEAVTQ 207
Query: 229 MIAGGSSVVGMVCAKSVVNQFIS------SMSASADVLAMATIEVDLN---LIPEGQSVT 279
+I G V K QF S +M+ + VL+ E+DL+ L G
Sbjct: 208 VITGMQKTVIPCNWKFAAEQFCSDMYHAGTMAHLSGVLSSLPPEMDLSQVKLPSSGNQFR 267
Query: 280 FKWRG 284
KW G
Sbjct: 268 AKWGG 272
>pdb|1JM1|A Chain A, Crystal Structure Of The Soluble Domain Of The Rieske
Protein Ii (Soxf) From Sulfolobus Acidocaldarius
Length = 204
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 136 ICTHLGC-----VPIANAGDWGGY------YCPCHGSHYDA--SGRIRKGPAPTNMEV 180
+C HLGC V +++ D G Y +CPCHGS Y G + GPAP + +
Sbjct: 93 VCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPI 150
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 124 RVKDPSWLVIIGICTHLGC-VPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTN----- 177
R KD S V + C H G + ++AG+ + C HG YD +G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDK 146
Query: 178 ---------MEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRDRNPDKGQEETQRKAFTY 228
E P Q + A+ D++ PD Y D P + A T
Sbjct: 147 KEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTV 206
Query: 229 MIAGGSSVVGMVCAKSVVNQFISSMSAS------ADVLAMATIEVDLN 270
I G V K QF S M + + +LA E+DL+
Sbjct: 207 AIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLS 254
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 124 RVKDPSWLVIIGICTHLGC-VPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTN----- 177
R KD S V + C H G + ++AG+ + C HG YD +G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDK 146
Query: 178 ---------MEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRDRNPDKGQEETQRKAFTY 228
E P Q + A+ D++ PD Y D P + A T
Sbjct: 147 KEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTV 206
Query: 229 MIAGGSSVVGMVCAKSVVNQFISSMSAS------ADVLAMATIEVDLN 270
I G V K QF S M + + +LA E+DL+
Sbjct: 207 AIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLS 254
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 124 RVKDPSWLVIIGICTHLGC-VPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTN----- 177
R KD S V + C H G + ++AG+ + C HG YD +G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFCDK 146
Query: 178 ---------MEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRDRNPDKGQEETQRKAFTY 228
E P Q + A+ D++ PD Y D P + A T
Sbjct: 147 KEGDCGFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTV 206
Query: 229 MIAGGSSVVGMVCAKSVVNQFISSMSAS------ADVLAMATIEVDLN 270
I G V K QF S M + + +LA E+DL+
Sbjct: 207 AIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLS 254
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 60/170 (35%), Gaps = 21/170 (12%)
Query: 124 RVKDPSWLVIIGICTHLGCVPI-ANAGDWGGYYCPCHGSHYDASGRIRKGPAPTN----- 177
R KD S V + C H G + ++ G+ + C HG YD +G + P
Sbjct: 87 RQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDK 146
Query: 178 ---------MEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRDRNPDKGQEETQRKAFTY 228
+ P Q E + A+ D PD Y D P + +A T
Sbjct: 147 KEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVMLDRTEAGTE 206
Query: 229 MIAGGSSVVGMVCAKSVVNQFIS------SMSASADVLAMATIEVDLNLI 272
I G V K QF S +MS + VLA E+DL I
Sbjct: 207 AIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGLPPEMDLTQI 256
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 136 ICTHLGCVPIANAGDWGGYYCPCHGSHYDASGR 168
I LG P AN GD + P HG+ +D +G+
Sbjct: 233 IAGSLGIAPSANIGDKKALFEPVHGAAFDIAGK 265
>pdb|1G8J|B Chain B, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8J|D Chain D, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 133
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 136 ICTHLGCVPIANAGDWGGYYCPCHGSHYDA--SGRIRKGPAPTNMEVPPYQFGDEGILIR 193
+CTH+GC P + + CPCH + +DA +G++ G A ++ +L+R
Sbjct: 59 LCTHMGC-PTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADL---------PRVLLR 108
Query: 194 MLAHSDIRT 202
A SD T
Sbjct: 109 YDAASDALT 117
>pdb|1G8K|B Chain B, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|D Chain D, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|F Chain F, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
pdb|1G8K|H Chain H, Crystal Structure Analysis Of Arsenite Oxidase From
Alcaligenes Faecalis
Length = 133
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 136 ICTHLGCVPIANAGDWGGYYCPCHGSHYDA--SGRIRKGPAPTNMEVPPYQFGDEGILIR 193
+CTH+GC P + + CPCH + +DA +G++ G A ++ +L+R
Sbjct: 59 LCTHMGC-PTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADL---------PRVLLR 108
Query: 194 MLAHSDIRT 202
A SD T
Sbjct: 109 YDAASDALT 117
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 135 GICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRM 194
G+ LG P N GD + P HGS D +G+ + P +++
Sbjct: 236 GLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK--------GIANPTAAILSAAMMLDY 287
Query: 195 LAHSDI-----RTPDFSKYRRDRNPDKGQEETQRKAFTYMI 230
L + + D R R PD G + T +AFT +
Sbjct: 288 LGEKEAAKRVEKAVDLVLERGPRTPDLGGDATT-EAFTEAV 327
>pdb|3EN1|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|A Chain A, Apo Toluene 2,3-Dioxygenase
Length = 450
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 124 RVKDPSWLVIIGICTHLGC-VPIANAGDWGGYYCPCHGSHYDASGRIRKGP 173
R KD S V + C H G + A+AG+ + C HG YD +G + P
Sbjct: 83 RQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 135 GICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRM 194
G+ LG P N GD + P HGS D +G+ + P +++
Sbjct: 235 GLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK--------GIANPTAAILSAAMMLDY 286
Query: 195 LAHSDI-----RTPDFSKYRRDRNPDKGQEETQRKAFTYMI 230
L + + D R R PD G + T +AFT +
Sbjct: 287 LGEKEAAKRVEKAVDLVLERGPRTPDLGGDATT-EAFTEAV 326
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 135 GICTHLGCVPIANAGDWGGYYCPCHGSHYDASGR 168
G+ LG P N GD + P HGS D +G+
Sbjct: 236 GLMGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK 269
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 124 RVKDPSWLVIIGICTHLGCVPI-ANAGDWGGYYCPCHGSHYDASGRIRKGP 173
R D S + +C H G + A AG+ G+ C HG Y ++G ++ P
Sbjct: 66 RQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVP 116
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 118 PQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGP 173
P + D + D + +I G LG P +N GD G + P HGS +G+ + P
Sbjct: 296 PNLNGDYLSDAAAALIGG----LGIAPGSNIGDGIGVFEPVHGSAPKYAGQNKVNP 347
>pdb|2KPZ|A Chain A, Human Nedd4 3rd Ww Domain Complex With The Human T-Cell
Leukemia Virus 1 Gag-Pro Poliprotein Derived Peptide
Sdpqipppyvep
pdb|2KQ0|A Chain A, Human Nedd4 3rd Ww Domain Complex With Ebola Zaire Virus
Matrix Protein Vp40 Derived Peptide Ilptappeymea
Length = 49
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 68 AMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQ 101
AM E++ +P+G V G+P FI H T+
Sbjct: 2 AMGPSEIEQGFLPKGWEVRHAPNGRPFFIDHNTK 35
>pdb|1NDO|A Chain A, Napthalene 1,2-Dioxygenase
pdb|1NDO|C Chain C, Napthalene 1,2-Dioxygenase
pdb|1NDO|E Chain E, Napthalene 1,2-Dioxygenase
pdb|1EG9|A Chain A, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|A Chain A, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|A Chain A, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|A Chain A, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|A Chain A, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|A Chain A, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|A Chain A, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|A Chain A, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|A Chain A, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMK|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HMM|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMO|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 449
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 124 RVKDPSWLVIIGICTHLGCVPIA-NAGDWGGYYCPCHGSHYDASGRIRKGPAPTNM 178
R D S + +C H G ++ AG+ G+ C HG + ++G ++ P ++
Sbjct: 68 RQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDL 123
>pdb|2HMJ|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HML|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMN|A Chain A, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene
Length = 449
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 124 RVKDPSWLVIIGICTHLGCVPIA-NAGDWGGYYCPCHGSHYDASGRIRKGPAPTNM 178
R D S + +C H G ++ AG+ G+ C HG + ++G ++ P ++
Sbjct: 68 RQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDL 123
>pdb|2XDG|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Growth Hormone Releasing Hormone Receptor.
pdb|2XDG|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Growth Hormone Releasing Hormone Receptor
Length = 92
Score = 27.7 bits (60), Expect = 8.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 140 LGCVPIANAGDWGGYYCPCHGSHYDA-SGRIRKGPAPTNME--VPPY 183
L C P A +G+W CP SH+ + SG +++ T PPY
Sbjct: 31 LLCWPTAGSGEWVTLPCPDFFSHFSSESGAVKRDCTITGWSEPFPPY 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,657,191
Number of Sequences: 62578
Number of extensions: 337028
Number of successful extensions: 808
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 60
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)