Query psy6642
Match_columns 292
No_of_seqs 369 out of 2452
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:27:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_E Ubiquinol-cytochrome C 100.0 1.5E-48 5.2E-53 344.0 15.9 190 3-192 1-195 (196)
2 3cx5_E Cytochrome B-C1 complex 100.0 1.1E-45 3.8E-50 323.1 19.8 184 4-192 1-184 (185)
3 2qjy_C Ubiquinol-cytochrome C 100.0 2.9E-37 1E-41 270.2 16.9 163 27-192 8-186 (187)
4 2nwf_A Ubiquinol-cytochrome C 100.0 5.2E-33 1.8E-37 233.1 13.1 123 70-192 2-140 (141)
5 1rie_A Rieske iron-sulfur prot 100.0 6.7E-31 2.3E-35 216.9 13.4 125 68-192 3-128 (129)
6 1vf5_D Rieske iron-sulfur prot 100.0 2.3E-29 7.8E-34 218.5 4.6 145 27-201 12-171 (179)
7 4aay_B AROB; oxidoreductase, r 99.9 4.3E-25 1.5E-29 191.1 9.5 105 69-191 49-159 (175)
8 1pp9_E Ubiquinol-cytochrome C 99.9 3.6E-25 1.2E-29 194.8 7.4 97 196-292 1-101 (196)
9 1nyk_A Rieske iron-sulfur prot 99.9 1.5E-24 5.2E-29 186.0 5.0 121 70-193 21-145 (165)
10 3gce_A Ferredoxin component of 99.9 3E-22 1E-26 163.0 10.9 94 74-194 15-111 (121)
11 3cx5_E Cytochrome B-C1 complex 99.9 1.1E-22 3.6E-27 177.5 8.0 90 198-292 2-91 (185)
12 2qpz_A Naphthalene 1,2-dioxyge 99.9 5E-22 1.7E-26 156.6 10.1 93 75-194 9-102 (103)
13 3dqy_A Toluene 1,2-dioxygenase 99.9 2.5E-22 8.5E-27 159.3 7.6 93 75-194 7-100 (106)
14 1fqt_A Rieske-type ferredoxin 99.9 1.3E-21 4.6E-26 156.6 10.3 93 75-194 11-105 (112)
15 2i7f_A Ferredoxin component of 99.8 9.7E-22 3.3E-26 156.3 7.6 93 75-194 9-103 (108)
16 1g8k_B Arsenite oxidase; molyb 99.8 2.3E-21 7.8E-26 160.5 9.5 105 71-193 8-119 (133)
17 1vm9_A Toluene-4-monooxygenase 99.8 1.9E-21 6.4E-26 155.4 8.4 101 75-206 7-109 (111)
18 2de6_D Ferredoxin component of 99.8 3.7E-21 1.3E-25 155.1 9.6 93 75-194 10-104 (115)
19 1rfs_A Rieske protein; iron-su 99.8 7.4E-21 2.5E-25 158.7 9.4 97 76-199 29-128 (139)
20 1jm1_A Rieske iron-sulfur prot 99.8 2.3E-21 8E-26 171.4 3.4 91 114-209 59-176 (204)
21 3c0d_A Putative nitrite reduct 99.8 4.4E-20 1.5E-24 149.6 7.6 93 75-194 11-109 (119)
22 2jo6_A Nitrite reductase [NAD( 99.8 9.1E-20 3.1E-24 146.0 8.6 93 75-194 12-111 (113)
23 2jza_A Nitrite reductase [NAD( 99.8 2.3E-19 7.8E-24 147.7 10.0 105 75-210 9-120 (130)
24 3azc_A Cytochrome B6-F complex 99.6 2.8E-20 9.7E-25 154.2 0.0 75 126-201 48-125 (133)
25 4aiv_A Probable nitrite reduct 99.8 1.8E-18 6.2E-23 140.5 8.4 94 74-194 14-115 (119)
26 3d89_A Rieske domain-containin 99.7 8E-18 2.7E-22 142.5 4.0 93 75-194 22-133 (157)
27 2qjy_C Ubiquinol-cytochrome C 99.7 1.4E-17 4.8E-22 145.4 5.6 70 220-292 8-77 (187)
28 2zyl_A Possible oxidoreductase 99.7 9.1E-17 3.1E-21 154.2 11.7 112 75-212 31-153 (386)
29 3gke_A DDMC; rieske cluster, n 99.7 6.7E-17 2.3E-21 153.1 9.7 109 75-210 14-132 (349)
30 3gkq_A Terminal oxygenase comp 99.7 5.6E-16 1.9E-20 148.6 12.3 109 74-212 36-155 (389)
31 3gcf_A Terminal oxygenase comp 99.6 6.4E-16 2.2E-20 148.5 11.9 107 75-211 40-157 (394)
32 3vca_A Ring-hydroxylating diox 99.6 4.3E-16 1.5E-20 150.8 9.4 105 75-209 49-163 (412)
33 3n0q_A Putative aromatic-ring 99.6 6.6E-16 2.3E-20 149.4 9.9 105 75-209 47-161 (409)
34 2gbw_A Biphenyl 2,3-dioxygenas 99.6 7.8E-16 2.7E-20 150.4 9.8 106 75-210 43-162 (454)
35 2bmo_A Oxygenase-alpha NBDO; n 99.6 9.8E-16 3.3E-20 149.3 9.5 106 75-210 42-162 (447)
36 2de6_A Terminal oxygenase comp 99.6 5.6E-15 1.9E-19 141.7 12.5 105 75-209 34-149 (392)
37 1z01_A 2-OXO-1,2-dihydroquinol 99.6 3.7E-15 1.3E-19 145.4 10.8 94 75-195 49-153 (446)
38 2b1x_A Naphthalene dioxygenase 99.6 2.5E-15 8.7E-20 147.4 9.5 106 75-210 51-171 (470)
39 1uli_A Biphenyl dioxygenase la 99.6 1.6E-15 5.4E-20 148.5 7.9 106 75-210 61-179 (460)
40 3gzx_A Biphenyl dioxygenase su 99.5 1.5E-14 5.1E-19 141.8 8.8 107 75-211 63-189 (457)
41 1vf5_D Rieske iron-sulfur prot 98.5 1.5E-08 5.2E-13 87.3 1.0 69 220-291 12-93 (179)
42 4aay_B AROB; oxidoreductase, r 95.6 0.0038 1.3E-07 53.3 1.7 68 219-291 8-81 (175)
43 1q90_R Cytochrome B6-F complex 85.7 0.7 2.4E-05 31.2 3.2 16 27-42 8-23 (49)
44 1q90_R Cytochrome B6-F complex 83.4 0.39 1.3E-05 32.5 1.2 36 220-258 8-43 (49)
45 2pq4_B Periplasmic nitrate red 72.8 2.7 9.3E-05 26.2 2.7 10 28-37 3-12 (35)
46 1dj7_B Ferredoxin thioredoxin 37.4 12 0.00041 27.3 1.2 21 266-287 25-47 (75)
47 1x31_C Sarcosine oxidase gamma 34.0 38 0.0013 28.7 4.1 39 253-291 125-165 (206)
48 2gag_C Heterotetrameric sarcos 32.5 45 0.0015 28.4 4.4 39 253-291 127-167 (210)
49 3sbq_A Nitrous-oxide reductase 29.7 15 0.00053 36.8 1.0 20 220-239 17-36 (638)
50 3c75_A Amicyanin; copper prote 25.8 24 0.00081 27.7 1.3 32 254-285 36-77 (132)
51 3dlm_A Histone-lysine N-methyl 24.9 39 0.0013 29.3 2.6 85 166-286 89-173 (213)
52 1feu_A 50S ribosomal protein L 22.0 34 0.0012 29.4 1.6 36 245-280 116-152 (206)
No 1
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=100.00 E-value=1.5e-48 Score=343.97 Aligned_cols=190 Identities=63% Similarity=1.161 Sum_probs=176.7
Q ss_pred CCCCCCCCCccccccCCCCC--CCCC--CcCchhhHHHHHHhHHHHHHHHHHHHHHHhhcCCCcchhhhccccceeecCC
Q psy6642 3 AHSDIRTPDFSKYRRDRNPD--KGQE--ETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNL 78 (292)
Q Consensus 3 ~~~~~~~pd~~~yr~~~~~~--~~~~--~~~RR~fl~~atG~~~~~g~~aA~~~~~~~i~~~~p~a~~~a~~~~~v~~s~ 78 (292)
+|||+.+|||++||+.+++| ++++ +.+||+|+|+++|+++++|++++..++.+|+.+++|+++.++.+.+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~v~v~ls~ 80 (196)
T 1pp9_E 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSD 80 (196)
T ss_dssp CGGGCCCCCCTTTBCGGGCCTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHCCCCEEEEGGG
T ss_pred CCCCcCCCCchHhhcccccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccccccEEEHHH
Confidence 79999999999999999888 3332 6789999999999988888888888999999999999999988899999999
Q ss_pred CCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCeEEcCC
Q psy6642 79 IPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPC 158 (292)
Q Consensus 79 l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~~~CPc 158 (292)
|++|+.++++|+|+|++|+++++++|+...++....++||+...+|..+++|+|++++|||+||+|.++.++++.|+|||
T Consensus 81 l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~~~~CP~ 160 (196)
T 1pp9_E 81 IPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPC 160 (196)
T ss_dssp SCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTSSEEETT
T ss_pred CCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCCEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887778999999
Q ss_pred CCcEEcCCCceecCCCCCCCCCCceEe-ecCceEE
Q psy6642 159 HGSHYDASGRIRKGPAPTNMEVPPYQF-GDEGILI 192 (292)
Q Consensus 159 HGs~FD~~G~v~~gPa~~~L~~~p~~~-~~d~i~V 192 (292)
|||+||++|+++.||++.+|++||+++ +++.|+|
T Consensus 161 HGs~FD~~G~v~~gPa~~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 161 HGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp TTEEECTTCCEEESSCCSCCCCCCEEEETTTEEEE
T ss_pred CCCEECCCCCCccCCCCCCCcceeEEEEECCEEEE
Confidence 999999999999999999999999999 6776654
No 2
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=100.00 E-value=1.1e-45 Score=323.09 Aligned_cols=184 Identities=53% Similarity=1.076 Sum_probs=169.3
Q ss_pred CCCCCCCCccccccCCCCCCCCCCcCchhhHHHHHHhHHHHHHHHHHHHHHHhhcCCCcchhhhccccceeecCCCCCCC
Q psy6642 4 HSDIRTPDFSKYRRDRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNLIPEGQ 83 (292)
Q Consensus 4 ~~~~~~pd~~~yr~~~~~~~~~~~~~RR~fl~~atG~~~~~g~~aA~~~~~~~i~~~~p~a~~~a~~~~~v~~s~l~~g~ 83 (292)
.+|+.+|||++||+.+ ..+++||+|||+++|++++++++++.+.+.+|+.+++|.+++++.+.+++++++|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~-----~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~v~V~~s~l~~G~ 75 (185)
T 3cx5_E 1 KSTYRTPNFDDVLKEN-----NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGK 75 (185)
T ss_dssp CCTTSCCCCTTTBCCT-----TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGCCCCCEEEEGGGCCTTC
T ss_pred CCCccCCCchhhccCC-----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCcchhccCcEEEEHHHCCCCC
Confidence 4899999999999754 34778999999999998888888888889999999999999998888999999999999
Q ss_pred eEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCeEEcCCCCcEE
Q psy6642 84 SVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHY 163 (292)
Q Consensus 84 ~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~~~CPcHGs~F 163 (292)
.++++|+|+|++|++++.+||....++....++||+...+|..+++|+|++++|||+||.+.++.++++.|+||||||+|
T Consensus 76 ~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~~~~~~~~~CPcHGs~F 155 (185)
T 3cx5_E 76 NVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHY 155 (185)
T ss_dssp EEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEETTTTEEEETTTTEEE
T ss_pred eEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccCCCCCCEEEcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999776665566899999999999
Q ss_pred cCCCceecCCCCCCCCCCceEeecCceEE
Q psy6642 164 DASGRIRKGPAPTNMEVPPYQFGDEGILI 192 (292)
Q Consensus 164 D~~G~v~~gPa~~~L~~~p~~~~~d~i~V 192 (292)
|++|+++.||++++|++++++++++.++|
T Consensus 156 D~~G~v~~gPa~~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 156 DISGRIRKGPAPLNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp CTTCCEEESSCCSCCCCCCEEEETTEEEE
T ss_pred CCCCCEecCCCCCCcceEEEEEECCEEEE
Confidence 99999999999999999999998877765
No 3
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=100.00 E-value=2.9e-37 Score=270.16 Aligned_cols=163 Identities=45% Similarity=0.873 Sum_probs=143.2
Q ss_pred CcCchhhHHHHHHhHHHHHHHHHHHHHHHhhcCCCcchhhhccccceeecCCCCCCCeEEEEEcCeeEEEEeCChhhhhh
Q psy6642 27 ETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDT 106 (292)
Q Consensus 27 ~~~RR~fl~~atG~~~~~g~~aA~~~~~~~i~~~~p~a~~~a~~~~~v~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~ 106 (292)
+++||+||+++|++.+.++ +..++.||+.+++|.++..+.+.+++++++|++|+.++++|+|+|++|+++++++|..
T Consensus 8 ~~~RR~Fl~~~~~~~~~~~---a~~~~~p~v~~~~p~~~~~a~~~v~v~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~ 84 (187)
T 2qjy_C 8 AGTRRDFLYYATAGAGAVA---TGAAVWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIEL 84 (187)
T ss_dssp -CHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTSCCTTTSCCCCEEEECTTCCTTEEEEEEETTEEEEEEECCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCchhhcccccEEEEHHHCCCCCeEEEEECCEEEEEEECCHHHhhh
Confidence 6789999999988655443 4467899999999999988888889999999999999999999999999999999999
Q ss_pred cccccccccCCCC------------ccccccc--CCCeEEEEecccCCCcccCC-cCCCCCeEEcCCCCcEEcCCCceec
Q psy6642 107 EQNTNISQLRDPQ------------ADSDRVK--DPSWLVIIGICTHLGCVPIA-NAGDWGGYYCPCHGSHYDASGRIRK 171 (292)
Q Consensus 107 ~~~v~~~~l~dp~------------~~~~R~~--~g~~~a~~~~CtHlGc~l~~-~~~~~~~~~CPcHGs~FD~~G~v~~ 171 (292)
...+....++||+ ....|.. +|+|+|++++|||+||+|.+ +.++.+.|+||||||+||++|+++.
T Consensus 85 ~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~ 164 (187)
T 2qjy_C 85 GRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRK 164 (187)
T ss_dssp HHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEECCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEE
T ss_pred hhccchhhccCcccccccccccccccccccccCCCCeEEEEeCccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeC
Confidence 9988888999997 6666654 89999999999999999988 4455579999999999999999999
Q ss_pred CCCCCCCCCCceEeec-CceEE
Q psy6642 172 GPAPTNMEVPPYQFGD-EGILI 192 (292)
Q Consensus 172 gPa~~~L~~~p~~~~~-d~i~V 192 (292)
||++.+|++|++++++ +.|+|
T Consensus 165 gPa~~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 165 GPAPENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp SSCCSCCCBCSEEEEETTEEEE
T ss_pred CCCCCCCceEEEEEEeCCEEEE
Confidence 9999999999999975 55544
No 4
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=100.00 E-value=5.2e-33 Score=233.08 Aligned_cols=123 Identities=48% Similarity=1.001 Sum_probs=112.8
Q ss_pred ccceeecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCC------------ccccccc--CCCeEEEEe
Q psy6642 70 ATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQ------------ADSDRVK--DPSWLVIIG 135 (292)
Q Consensus 70 ~~~~v~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~------------~~~~R~~--~g~~~a~~~ 135 (292)
+.+++|+++|++|++++++|+|+|+||++||++||+....+.+..|+||+ ...+|.. +|+|+|+++
T Consensus 2 ~~~~vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~ 81 (141)
T 2nwf_A 2 ASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 81 (141)
T ss_dssp CCEEEECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEEC
T ss_pred CCEEEecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeC
Confidence 46799999999999999999999999999999999999999989999998 5567765 899999999
Q ss_pred cccCCCcccCC-cCCCCCeEEcCCCCcEEcCCCceecCCCCCCCCCCceEe-ecCceEE
Q psy6642 136 ICTHLGCVPIA-NAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQF-GDEGILI 192 (292)
Q Consensus 136 ~CtHlGc~l~~-~~~~~~~~~CPcHGs~FD~~G~v~~gPa~~~L~~~p~~~-~~d~i~V 192 (292)
+|||+||+|.+ +.++.+.|+||||||+||++|+++.||++.+|++||+++ +++.|+|
T Consensus 82 ~C~H~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 82 VCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp CCTTTCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCSCCCBCSEEESSSSEEEE
T ss_pred cCCCCCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCCCCCCceeEEEEECCEEEE
Confidence 99999999998 666668999999999999999999999999999999999 6777664
No 5
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.97 E-value=6.7e-31 Score=216.87 Aligned_cols=125 Identities=70% Similarity=1.365 Sum_probs=116.8
Q ss_pred ccccceeecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCc
Q psy6642 68 AMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIAN 147 (292)
Q Consensus 68 a~~~~~v~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~ 147 (292)
+.+.+++++++|++|+.+++.|+|+|++|+++++++|....++....++||+...+|..+|+++|++++|||+||+|.++
T Consensus 3 a~~~~~v~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 3 AMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp CCSSEEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEET
T ss_pred ccCceEeeHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeecccc
Confidence 45677889999999999999999999999999999999988888899999999999999999999999999999999998
Q ss_pred CCCCCeEEcCCCCcEEcCCCceecCCCCCCCCCCceEe-ecCceEE
Q psy6642 148 AGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQF-GDEGILI 192 (292)
Q Consensus 148 ~~~~~~~~CPcHGs~FD~~G~v~~gPa~~~L~~~p~~~-~~d~i~V 192 (292)
..+++.|.||||||+||++|+++.+|++.+|++||+++ +++.++|
T Consensus 83 ~~~~~~i~CP~Hg~~fd~~G~~~~~P~~~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 83 AGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp CTTTEEEEETTTTEEEETTCCEEESSCCSCCCCCCEEESSSSEEEE
T ss_pred cCCCCEEEcCCCCCEEcCCCCEeeCCCCCCCCceeEEEEeCCEEEE
Confidence 77778999999999999999999999999999999999 7887765
No 6
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.95 E-value=2.3e-29 Score=218.48 Aligned_cols=145 Identities=28% Similarity=0.480 Sum_probs=106.0
Q ss_pred CcCchhhHHHHHHhHHHHHHHHHHHHHHHhhcCCCcchhhhccc-cceee-----------cCCCCCCCeEEEE-EcCee
Q psy6642 27 ETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMA-TIEVD-----------LNLIPEGQSVTFK-WRGKP 93 (292)
Q Consensus 27 ~~~RR~fl~~atG~~~~~g~~aA~~~~~~~i~~~~p~a~~~a~~-~~~v~-----------~s~l~~g~~~~~~-~~g~p 93 (292)
+++||+||+.++++++.++ +..++.|++..++|.+...+.+ .+.++ ++++++|+...+. +.|++
T Consensus 12 ~~~RR~Fl~~~~~~~~~~~---~~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~~~~~g~~ 88 (179)
T 1vf5_D 12 DMGRRQFMNLLAFGTVTGV---ALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDP 88 (179)
T ss_dssp CCCCCTTSCTTHHHHHHHH---HHHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEESCSSSSC
T ss_pred CCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEEeccCCCe
Confidence 6799999998887554333 3356778888777766543322 11111 2234444443332 33333
Q ss_pred EEEEeCChhhhhhcccccccccCCCCcccccccCCCe--EEEEecccCCCcccCCcCCCCCeEEcCCCCcEEcCCCceec
Q psy6642 94 LFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSW--LVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRK 171 (292)
Q Consensus 94 v~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~--~a~~~~CtHlGc~l~~~~~~~~~~~CPcHGs~FD~~G~v~~ 171 (292)
++ ++|..+|++ +|++++|||+||+|.++.. .+.|.||||||+||.+|+++.
T Consensus 89 ~~--------------------------lv~~~~g~~~~~a~~~~CtH~G~~l~~~~~-~~~~~CP~Hgs~Fd~~G~~~~ 141 (179)
T 1vf5_D 89 TY--------------------------IVVESKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDETGRVIR 141 (179)
T ss_dssp EE--------------------------CCBCTTCCBCSCCCBCBCTTTSCBCCBCSS-SSSEECTTTCCEECSSSCCCS
T ss_pred EE--------------------------EEEECCCcEEEEEEeCccCCCCCCCcccCC-CCEEECCCCCCEECCCCcEec
Confidence 32 345567876 9999999999999999875 489999999999999999999
Q ss_pred CCCCCCCCCCceEeecCceEEEeecccCCC
Q psy6642 172 GPAPTNMEVPPYQFGDEGILIRMLAHSDIR 201 (292)
Q Consensus 172 gPa~~~L~~~p~~~~~d~i~V~I~ahtD~~ 201 (292)
||++++|++|+++++++.|+|.+|..+|++
T Consensus 142 gPa~~~L~~~~v~v~~g~v~v~~~~~~~~r 171 (179)
T 1vf5_D 142 GPAPLSLALCHATVQDDNIVLTPWTETDFR 171 (179)
T ss_dssp SSCCSCCBCCCCCCSSSSCCCCCCCCCCTT
T ss_pred CCCCCCCCeEEEEEECCEEEEEeecCCCCc
Confidence 999999999999999999998888777765
No 7
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.91 E-value=4.3e-25 Score=191.11 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=87.5
Q ss_pred ccccee-ecCCCCCCCeEEEEEcC--eeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccC
Q psy6642 69 MATIEV-DLNLIPEGQSVTFKWRG--KPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPI 145 (292)
Q Consensus 69 ~~~~~v-~~s~l~~g~~~~~~~~g--~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~ 145 (292)
..++.+ ++++|++|+.+.+.+.+ .|+++++.++ ....+|+.+|+++|++++|||+||+|.
T Consensus 49 ~p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~-----------------~~~~~r~~~G~v~A~~n~CpH~G~~L~ 111 (175)
T 4aay_B 49 YPANRLANISELTLNEPLDVAYPDEDAAGVLLKLGT-----------------RVEGGVGPDGDIVGFSTICPHKGFPLS 111 (175)
T ss_dssp CCCEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSS-----------------CCTTCBTTTTCEEEEECBCTTTCCBCE
T ss_pred CCcceEEEHHHCCCCCEEEEEECCCCCEEEEEEccc-----------------ccccccCCCCEEEEEeCCCCCCCCCCc
Confidence 344455 88999999999999964 5888876421 134577789999999999999999999
Q ss_pred CcCCCCCeEEcCCCCcEEcCC--CceecCCCCCCCCCCceEee-cCceE
Q psy6642 146 ANAGDWGGYYCPCHGSHYDAS--GRIRKGPAPTNMEVPPYQFG-DEGIL 191 (292)
Q Consensus 146 ~~~~~~~~~~CPcHGs~FD~~--G~v~~gPa~~~L~~~p~~~~-~d~i~ 191 (292)
++ .+.+.|.||||||+||++ |+++.+|+.++|+.|+++++ ++.|+
T Consensus 112 ~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~~~L~~y~v~vd~dG~V~ 159 (175)
T 4aay_B 112 YS-ADNKTFNCPGHFSVFDPEKGGQQVWGQATQNLPQYVLRVADNGDIF 159 (175)
T ss_dssp EE-TTTTEEECTTTCCEEEGGGTTEEEECSCSSCCCBEEEEECTTSEEE
T ss_pred cC-CCCCEEEcCCCCCEECCCCCceEecCCCCCCcCEEEEEEEcCCEEE
Confidence 98 455899999999999995 99999999999999999994 66654
No 8
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.91 E-value=3.6e-25 Score=194.84 Aligned_cols=97 Identities=55% Similarity=0.921 Sum_probs=90.4
Q ss_pred cccCCCCCCccccccCCCCCCCc----cccccceeeehhHHHHHHHHHHhhhHhhhhhhhccCCCHHhhhccceEEecCC
Q psy6642 196 AHSDIRTPDFSKYRRDRNPDKGQ----EETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNL 271 (292)
Q Consensus 196 ahtD~~~P~F~~yr~~~~~~~~~----~~~~rr~f~~~~~~~~~~~g~~~~~~~~~~~v~~~~p~~~~~a~~~~evdls~ 271 (292)
+|||+++|||++||.++++|++. .+.+||+|+|+++++++++|+++++.+++||+++|+|+++++|++++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~v~v~ls~ 80 (196)
T 1pp9_E 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSD 80 (196)
T ss_dssp CGGGCCCCCCTTTBCGGGCCTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHCCCCEEEEGGG
T ss_pred CCCCcCCCCchHhhcccccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccccccEEEHHH
Confidence 69999999999999999877642 24569999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEECCeeeEEEcC
Q psy6642 272 IPEGQSVTFKWRGKPLFIRHR 292 (292)
Q Consensus 272 i~~G~~~~~~WrgkPvfv~~R 292 (292)
|+|||.++|+|+||||||+||
T Consensus 81 l~~G~~~~v~~~G~pV~V~r~ 101 (196)
T 1pp9_E 81 IPEGKNMAFKWRGKPLFVRHR 101 (196)
T ss_dssp SCTTCEEEEEETTEEEEEEEC
T ss_pred CCCCCeEEEEECCEEEEEEEC
Confidence 999999999999999999986
No 9
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.90 E-value=1.5e-24 Score=186.04 Aligned_cols=121 Identities=21% Similarity=0.439 Sum_probs=90.4
Q ss_pred ccceeecCCCCCCCeEEEEEcCeeE--EEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCc
Q psy6642 70 ATIEVDLNLIPEGQSVTFKWRGKPL--FIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIAN 147 (292)
Q Consensus 70 ~~~~v~~s~l~~g~~~~~~~~g~pv--~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~ 147 (292)
+.+++++++|++|+.+++.|+|+|+ ++.+++..++.....+....+ +|+... |..++ ++|++++|||+||+|+.+
T Consensus 21 ~~~~v~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~-~~~~~~-~~~~g-v~A~~~~CpH~G~~L~~g 97 (165)
T 1nyk_A 21 EPKPIRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEEL-APEVAQ-HAAEG-VVAYSAVCTHLGCIVSQW 97 (165)
T ss_dssp SCCBCBGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGS-CHHHHT-TCBTT-EEEEECBCTTTCCBCCEE
T ss_pred CCcEecHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhc-Cccccc-cccCC-EEEEEeecCCCCeEcccc
Confidence 5678999999999999999999986 333322222111112222223 333322 44454 999999999999999876
Q ss_pred CCCCCeEEcCCCCcEEcC-CCc-eecCCCCCCCCCCceEeecCceEEE
Q psy6642 148 AGDWGGYYCPCHGSHYDA-SGR-IRKGPAPTNMEVPPYQFGDEGILIR 193 (292)
Q Consensus 148 ~~~~~~~~CPcHGs~FD~-~G~-v~~gPa~~~L~~~p~~~~~d~i~V~ 193 (292)
..+.+.|.||||||+||+ +|. ++.||++.+|+.|+++++++.++|.
T Consensus 98 ~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~~~L~~~~v~v~~g~V~v~ 145 (165)
T 1nyk_A 98 VADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVEDGVLVAA 145 (165)
T ss_dssp EGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCCEECEEEETTEEEEC
T ss_pred cCCCCEEECCCCCCEEcCCCCCeeecCCCCCCCcEEEEEEECCEEEEE
Confidence 666689999999999999 686 9999999999999999999877664
No 10
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.87 E-value=3e-22 Score=162.98 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=84.8
Q ss_pred eecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCc--CCCC
Q psy6642 74 VDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIAN--AGDW 151 (292)
Q Consensus 74 v~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~--~~~~ 151 (292)
..+++|++|+.+.+.+.|++++|.+ .+|+++|+++.|||+||+|+++ ..++
T Consensus 15 ~~~~el~~g~~~~~~~~g~~v~v~r---------------------------~~g~~~A~~n~CpH~g~~L~~G~~~~~~ 67 (121)
T 3gce_A 15 ATLDQLKPGVPTAFDVDGDEVMVVR---------------------------DGDSVYAISNLCSHAEAYLDMGVFHAES 67 (121)
T ss_dssp EEGGGSCTTCCEEEEETTEEEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETTT
T ss_pred EEHHHCCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEEeCcCCCCCCCCCCCceeecC
Confidence 3689999999999999999988754 2789999999999999999988 6666
Q ss_pred CeEEcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEe
Q psy6642 152 GGYYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 152 ~~~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I 194 (292)
+.|.||||||+||+ +|+++.+|+..+|+.|++++++|.|+|.+
T Consensus 68 ~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~v~~g~V~v~~ 111 (121)
T 3gce_A 68 LEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVVDGTEILVAP 111 (121)
T ss_dssp TEEECTTTCCEEETTTCCEEETTCCSCCCBCCEEEETTEEEECC
T ss_pred CEEEcCCCCCEEcCCCccEeCCCCcCCcceEEEEEECCEEEEEE
Confidence 89999999999997 99999999999999999999999887653
No 11
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.87 E-value=1.1e-22 Score=177.54 Aligned_cols=90 Identities=47% Similarity=0.836 Sum_probs=83.8
Q ss_pred cCCCCCCccccccCCCCCCCccccccceeeehhHHHHHHHHHHhhhHhhhhhhhccCCCHHhhhccceEEecCCCCCCce
Q psy6642 198 SDIRTPDFSKYRRDRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNLIPEGQS 277 (292)
Q Consensus 198 tD~~~P~F~~yr~~~~~~~~~~~~~rr~f~~~~~~~~~~~g~~~~~~~~~~~v~~~~p~~~~~a~~~~evdls~i~~G~~ 277 (292)
+|+++|||++||+++. .+.+||+|||+++++++++|+++++++++||+++|+|+++++|++.++||+++|+||+.
T Consensus 2 ~~~~~~~~~~~~~~~~-----~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~v~V~~s~l~~G~~ 76 (185)
T 3cx5_E 2 STYRTPNFDDVLKENN-----DADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKN 76 (185)
T ss_dssp CTTSCCCCTTTBCCTT-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGCCCCCEEEEGGGCCTTCE
T ss_pred CCccCCCchhhccCCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCcchhccCcEEEEHHHCCCCCe
Confidence 7899999999997432 34579999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCeeeEEEcC
Q psy6642 278 VTFKWRGKPLFIRHR 292 (292)
Q Consensus 278 ~~~~WrgkPvfv~~R 292 (292)
++|+|+||||||+||
T Consensus 77 ~~v~~~g~pv~v~r~ 91 (185)
T 3cx5_E 77 VVVKWQGKPVFIRHR 91 (185)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCeEEEEEEC
Confidence 999999999999986
No 12
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.87 E-value=5e-22 Score=156.60 Aligned_cols=93 Identities=20% Similarity=0.316 Sum_probs=84.0
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCeE
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGY 154 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~~ 154 (292)
.+++|++|+.+.+.+.|++++|.+ .+|+++|+++.|||+||+|+++..+++.+
T Consensus 9 ~~~~l~~g~~~~~~~~g~~i~v~r---------------------------~~g~~~A~~~~CpH~g~~L~~g~~~~~~i 61 (103)
T 2qpz_A 9 ALSDILEGDVLGVTVEGKELALYE---------------------------VEGEIYATDNLCTHGSARMSDGYLEGREI 61 (103)
T ss_dssp ETTSCCTTCEEEEEETTEEEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETTEE
T ss_pred EHHHcCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEECCcCCCCCCCCCCCeEeCCEE
Confidence 679999999999999999987753 47899999999999999999886566899
Q ss_pred EcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEe
Q psy6642 155 YCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 155 ~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I 194 (292)
.||||||+||+ +|+++.+|+..+|+.|+++++++.++|.+
T Consensus 62 ~Cp~Hg~~Fd~~~G~~~~~P~~~~L~~~~v~~~~g~v~v~~ 102 (103)
T 2qpz_A 62 ECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENLRVMIDL 102 (103)
T ss_dssp ECTTTTCEEETTTCCEEETTCCSCCCEECEEEETTEEEEEC
T ss_pred ECCCCCCEEeCCCCCEeCCCCCCCCCEEeEEEECCEEEEEc
Confidence 99999999999 99999999999999999999999888753
No 13
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.86 E-value=2.5e-22 Score=159.27 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=83.8
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCeE
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGY 154 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~~ 154 (292)
.+++|++|+.+.+.+.|++++|.+ .+|+++|+++.|||+||+|+++..+++.+
T Consensus 7 ~~~~l~~g~~~~~~~~g~~i~v~r---------------------------~~g~~~A~~~~CpH~g~~L~~g~~~~~~i 59 (106)
T 3dqy_A 7 RQGDLPPGEMQRYEGGPEPVMVCN---------------------------VDGEFFAVQDTCTHGDWALSDGYLDGDIV 59 (106)
T ss_dssp EGGGSCTTCEEEECCSSSCEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETTEE
T ss_pred EHHHCCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEEeCcCCCCCCCCcCcEEeCCEE
Confidence 678999999999999999988753 37899999999999999999876666899
Q ss_pred EcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEe
Q psy6642 155 YCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 155 ~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I 194 (292)
.||||||+||+ +|+++.+|++.+|+.|++++++|.|+|.+
T Consensus 60 ~Cp~Hg~~Fdl~~G~~~~~P~~~~L~~~~v~~~~g~v~v~~ 100 (106)
T 3dqy_A 60 ECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVHVDL 100 (106)
T ss_dssp ECTTTCCEEETTTCCEEETTCCSCCCEECEEEETTEEEECG
T ss_pred ECCCCCCEEeCCCCCEeCCCCCCCccEEEEEEECCEEEEEc
Confidence 99999999997 99999999999999999999999887753
No 14
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.86 E-value=1.3e-21 Score=156.62 Aligned_cols=93 Identities=19% Similarity=0.333 Sum_probs=83.2
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCc-CCCCCe
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIAN-AGDWGG 153 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~-~~~~~~ 153 (292)
.+++|++|+.+.+.+.|++++|.+ . +|+++|+++.|||+||+|+.+ ..+++.
T Consensus 11 ~~~~l~~g~~~~~~~~g~~i~v~r--------------------------~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~ 63 (112)
T 1fqt_A 11 DRRDVPEGEALKVESGGTSVAIFN--------------------------V-DGELFATQDRCTHGDWSLSDGGYLEGDV 63 (112)
T ss_dssp EGGGSCTTCEEEEEETTEEEEEEE--------------------------E-TTEEEEEESBCTTSSCBSSTTCCEETTE
T ss_pred eHHHCCCCCeEEEEECCEEEEEEE--------------------------E-CCEEEEEECCCCCCCcCCCCCCEEcCCE
Confidence 688999999999999999988754 2 789999999999999999887 555689
Q ss_pred EEcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEe
Q psy6642 154 YYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 154 ~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I 194 (292)
|.||||||+||+ +|+++.+|+..+|+.|+++++++.|+|.+
T Consensus 64 i~CP~Hg~~Fd~~tG~~~~~P~~~~L~~~~v~~~~g~v~v~~ 105 (112)
T 1fqt_A 64 VECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDNDVLVDF 105 (112)
T ss_dssp EECTTTCCEEETTTCCEEESSCCSCCCBCCEEEETTEEEECT
T ss_pred EECCCCCCEEeCCCCcEeCCCCCCCccEEEEEEECCEEEEEe
Confidence 999999999999 99999999999999999999999777653
No 15
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.85 E-value=9.7e-22 Score=156.33 Aligned_cols=93 Identities=23% Similarity=0.349 Sum_probs=83.0
Q ss_pred ecCCCCCCCeEEEEEcCee-EEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCe
Q psy6642 75 DLNLIPEGQSVTFKWRGKP-LFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGG 153 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~p-v~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~ 153 (292)
.+++|++|+.+.+.+.|++ ++|.+ . +|+++|+++.|||+||+|+++..+++.
T Consensus 9 ~~~~l~~g~~~~~~~~g~~~v~v~r--------------------------~-~g~~~A~~~~CpH~g~~L~~g~~~~~~ 61 (108)
T 2i7f_A 9 QVASVKDGEPVAVYQEKMPALAVYN--------------------------V-DGEVFVTDNLCTHGNAMLTDGYQDGTI 61 (108)
T ss_dssp EGGGCBTTBCEEECCTTSSCEEEEE--------------------------E-TTEEEEEESBCSSSSCBGGGSEEETTE
T ss_pred EHhHcCCCCeEEEEECCeeEEEEEE--------------------------E-CCEEEEEeCcCCCCCCCCCCCEEeCCE
Confidence 6788999999999888888 87753 3 789999999999999999987665689
Q ss_pred EEcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEe
Q psy6642 154 YYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 154 ~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I 194 (292)
|.||||||+||+ +|+++.+|+..+|+.|++++++|.|+|.+
T Consensus 62 i~Cp~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~~~g~v~v~~ 103 (108)
T 2i7f_A 62 IECPFHGGSFDIATGAAKAFPCQIPIKTYPVTIEDGWVCIDQ 103 (108)
T ss_dssp EECSSTTCEEETTTCCBCSTTCCSCCCEECEEEETTEEEEEC
T ss_pred EEcCCCCCEEeCCCcCEeCCCCCCCccEEeEEEECCEEEEeC
Confidence 999999999998 99999999999999999999999888764
No 16
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.85 E-value=2.3e-21 Score=160.48 Aligned_cols=105 Identities=18% Similarity=0.365 Sum_probs=85.0
Q ss_pred ccee-ecCCCCCCCeEEEEEc--CeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCc
Q psy6642 71 TIEV-DLNLIPEGQSVTFKWR--GKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIAN 147 (292)
Q Consensus 71 ~~~v-~~s~l~~g~~~~~~~~--g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~ 147 (292)
++.+ .+++|++|+.+.+.|. ++++++++.+..+. ..+..+|+++|++++|||+||+|++.
T Consensus 8 ~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~-----------------~~~~~~g~~~A~~n~CpH~g~~L~~~ 70 (133)
T 1g8k_B 8 ATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVP-----------------GGVGPDDDIVAYSVLCTHMGCPTSYD 70 (133)
T ss_dssp CEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCT-----------------TCBTTTTCEEEEECBCTTTCCBCEEE
T ss_pred ceeEEEHHHCCCCCeEEEEecCCCceEEEEEcccccc-----------------ccccCCCEEEEEeCcCCCCCCCCCcc
Confidence 3444 7899999999999996 88998876432110 11235899999999999999999985
Q ss_pred CCCCCeEEcCCCCcEEcC--CCceecCCCCCCCCCCceEee--cCceEEE
Q psy6642 148 AGDWGGYYCPCHGSHYDA--SGRIRKGPAPTNMEVPPYQFG--DEGILIR 193 (292)
Q Consensus 148 ~~~~~~~~CPcHGs~FD~--~G~v~~gPa~~~L~~~p~~~~--~d~i~V~ 193 (292)
.+++.|.||||||+||+ +|+++.+|++.+|+.|+++++ ++.++|.
T Consensus 71 -~~~~~i~CP~Hg~~Fd~~~~G~~~~gP~~~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 71 -SSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp -TTTTEEECTTTCCEEEGGGTTEEEESSCSSCCCEEEEEEETTTTEEEEE
T ss_pred -cCCCEEECCCCCCEECCCCCCCEEcCCCCCCCCEEEEEEECCCCEEEEE
Confidence 34589999999999999 899999999999999999998 4546554
No 17
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.85 E-value=1.9e-21 Score=155.39 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=85.7
Q ss_pred ecCCCCCCCeEEEEE-cCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCe
Q psy6642 75 DLNLIPEGQSVTFKW-RGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGG 153 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~-~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~ 153 (292)
.+++|++|+.+.+.+ .|++++|.+ ..+|+++|+++.|||+||+|.++..+++.
T Consensus 7 ~~~~l~~g~~~~~~~~~g~~v~v~r--------------------------~~~g~~~A~~~~CpH~g~~L~~g~~~~~~ 60 (111)
T 1vm9_A 7 SLDDIWVGEMETFETSDGTEVLIVN--------------------------SEEHGVKAYQAMCPHQEILLSEGSYEGGV 60 (111)
T ss_dssp EGGGSCTTCEEEEECTTCCEEEEEE--------------------------ETTTEEEEEESBCSSSSCBGGGSEEETTE
T ss_pred EHHHCCCCCeEEEEEcCCCEEEEEE--------------------------eCCCeEEEEeCcCCCCCcCCCCceEcCCE
Confidence 578999999999999 888887754 34799999999999999999987655689
Q ss_pred EEcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEeecccCCCCCCcc
Q psy6642 154 YYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSDIRTPDFS 206 (292)
Q Consensus 154 ~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~ 206 (292)
|.||||||+||+ +|+++. |+..+|+.|+++++++.|+|.+ +...|.|+
T Consensus 61 i~Cp~Hg~~Fd~~tG~~~~-p~~~~L~~~~v~~~~g~v~v~~----~~~~~~~~ 109 (111)
T 1vm9_A 61 ITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEVKGDDIYVST----KGILPNKA 109 (111)
T ss_dssp EECTTTCCEEETTTCBBSS-SSSCBCCEECEEEETTEEEECC----TTCCCCCC
T ss_pred EEcCCCCCEEeCCCccCCC-CCcCCcCEEEEEEECCEEEEec----cCcCCCcc
Confidence 999999999999 699998 9999999999999998777653 33445554
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.84 E-value=3.7e-21 Score=155.05 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=84.0
Q ss_pred ecCCCCCCCeEEEEEcCe-eEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCe
Q psy6642 75 DLNLIPEGQSVTFKWRGK-PLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGG 153 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~-pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~ 153 (292)
.+++|++|+.+.+.+.|+ +++|.+ . +|+++|+++.|||+||+|+++..+++.
T Consensus 10 ~~~el~~g~~~~~~~~g~~~v~v~r--------------------------~-~g~~~A~~n~CpH~g~~L~~g~~~~~~ 62 (115)
T 2de6_D 10 AASDMQPGTIRRVNRVGAAPLAVYR--------------------------V-GDQFYATEDTCTHGIASLSEGTLDGDV 62 (115)
T ss_dssp EGGGCCTTEEEEEEETTEEEEEEEE--------------------------E-TTEEEEEESBCTTSSCBGGGSEEETTE
T ss_pred EHHHCCCCCeEEEEECCccEEEEEE--------------------------E-CCEEEEEeCCCCCCCCCCcCCEEeCCE
Confidence 678999999999999999 888754 2 789999999999999999987665689
Q ss_pred EEcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEe
Q psy6642 154 YYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 154 ~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I 194 (292)
|.||||||+||+ +|+++.+|+..+|+.|++++++|.|+|.+
T Consensus 63 i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~~~g~V~v~~ 104 (115)
T 2de6_D 63 IECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAG 104 (115)
T ss_dssp EECTTTCCEEETTTCCEEETTCCSCCCEEEEEESSSEEEEEE
T ss_pred EECCCCCCEEcCCCcCEeCCCCcCCCCEEEEEEECCEEEEec
Confidence 999999999998 99999999999999999999999888775
No 19
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.83 E-value=7.4e-21 Score=158.69 Aligned_cols=97 Identities=31% Similarity=0.646 Sum_probs=81.1
Q ss_pred cCCCCCCCeEEEE-EcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCe--EEEEecccCCCcccCCcCCCCC
Q psy6642 76 LNLIPEGQSVTFK-WRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSW--LVIIGICTHLGCVPIANAGDWG 152 (292)
Q Consensus 76 ~s~l~~g~~~~~~-~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~--~a~~~~CtHlGc~l~~~~~~~~ 152 (292)
+++|++|+.+.+. +.+.++++++ ..+|++ +|++++|||+||+|.++.. .+
T Consensus 29 ~~dlp~g~~~~~~~~~g~~~ilv~--------------------------~~~G~i~~~A~~n~CpH~g~~L~~g~~-~~ 81 (139)
T 1rfs_A 29 LKTHAPGDRTLTQGLKGDPTYLVV--------------------------ESDKTLATFGINAVCTHLGCVVPFNAA-EN 81 (139)
T ss_dssp HHHSCTTCEEEEECGGGCEEEEEB--------------------------CTTSSBCSEEEECBCTTTCCBCCEETT-TT
T ss_pred HhhCCCCccEEEEecCCCeEEEEE--------------------------eCCCcEEEEEEeCcCCCCCCCCccCCC-CC
Confidence 5678999888776 3566655433 247888 9999999999999998764 48
Q ss_pred eEEcCCCCcEEcCCCceecCCCCCCCCCCceEeecCceEEEeecccC
Q psy6642 153 GYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSD 199 (292)
Q Consensus 153 ~~~CPcHGs~FD~~G~v~~gPa~~~L~~~p~~~~~d~i~V~I~ahtD 199 (292)
.|.||||||+||.+|+++.+|++++|+.|+++++++.|+|.++...+
T Consensus 82 ~i~CP~Hg~~Fd~tG~~~~~P~~~~L~~~~v~v~~g~V~V~~~~~~~ 128 (139)
T 1rfs_A 82 KFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETD 128 (139)
T ss_dssp EEECTTTCCEEETTCCEEESSCCSCCCEEEEEEETTEEEEEECCSCC
T ss_pred EEEcCCCCCEECCCCCCccCCCCCCCCEEEEEEECCEEEEEeCCccc
Confidence 99999999999999999999999999999999999999888654433
No 20
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.82 E-value=2.3e-21 Score=171.44 Aligned_cols=91 Identities=25% Similarity=0.474 Sum_probs=72.8
Q ss_pred ccCCCCccccccc------------CCCeEEEEecccCCCcccCCcC-----------CCCCeEEcCCCCcEEcCC--Cc
Q psy6642 114 QLRDPQADSDRVK------------DPSWLVIIGICTHLGCVPIANA-----------GDWGGYYCPCHGSHYDAS--GR 168 (292)
Q Consensus 114 ~l~dp~~~~~R~~------------~g~~~a~~~~CtHlGc~l~~~~-----------~~~~~~~CPcHGs~FD~~--G~ 168 (292)
.+.++++.++|.. +|+++|++++|||+||+|+++. .+.+.|.||||||+||++ |+
T Consensus 59 ~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~tGG~ 138 (204)
T 1jm1_A 59 EIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGV 138 (204)
T ss_dssp EEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSE
T ss_pred eeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCCCCe
Confidence 3556666666665 7999999999999999998762 345899999999999995 69
Q ss_pred eecCCCCCCCCCCceEee--cCceEEEeecccCCCCCCccccc
Q psy6642 169 IRKGPAPTNMEVPPYQFG--DEGILIRMLAHSDIRTPDFSKYR 209 (292)
Q Consensus 169 v~~gPa~~~L~~~p~~~~--~d~i~V~I~ahtD~~~P~F~~yr 209 (292)
++.+|++.+|+.++++++ +|.+++.- ..-|+|.+..
T Consensus 139 v~~gPa~~~L~~~~v~v~~~~g~v~v~g-----~~~p~~~~~~ 176 (204)
T 1jm1_A 139 VVSGPAPRPLPIVILDYDSSTGDIYAVG-----TNAPYFSAGI 176 (204)
T ss_dssp EEESSCCSCCCBEEEEECTTTCEEEEEE-----ESSCCCCSSS
T ss_pred EecCCCCCCCCeEeeEEEecCCEEEEEe-----CCCCChhhcc
Confidence 999999999999999998 67666542 1246777755
No 21
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.80 E-value=4.4e-20 Score=149.61 Aligned_cols=93 Identities=12% Similarity=-0.010 Sum_probs=80.7
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCc-ccCCcCCCC--
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGC-VPIANAGDW-- 151 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc-~l~~~~~~~-- 151 (292)
.+++|++|+.+.+.+.|.+++|.+ ..+|+++|+++.|||+|| +|+.+..++
T Consensus 11 ~~~el~~g~~~~~~~~g~~v~v~r--------------------------~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~ 64 (119)
T 3c0d_A 11 QLDDLMPFIGATVLIEGERVALFY--------------------------IPDSGVYAVQDWDPIGKAYVMSRGIVGDIN 64 (119)
T ss_dssp EGGGSCBTCCEEEEETTEEEEEEE--------------------------ETTTEEEEEESEETTTTEECGGGSEEEESS
T ss_pred EHHHCCCCCeEEEEECCeEEEEEE--------------------------ecCCeEEEEeCCCCCCCCccCCCeEEcCCC
Confidence 678999999999999999987754 347899999999999999 798765332
Q ss_pred --CeEEcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEe
Q psy6642 152 --GGYYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 152 --~~~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I 194 (292)
..|.||||||+||+ +|+++.+|+ .+|+.|++++++|.|+|.+
T Consensus 65 g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~l~~~~v~v~~g~V~v~~ 109 (119)
T 3c0d_A 65 GEMCVASPLYKQHFSLKSGQCLEDEA-HCLKTWRVTVDDNQVCYLA 109 (119)
T ss_dssp SSEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEESSSEEEEEC
T ss_pred CCeEEECCCCCCEEECCCCcCCCCCC-ceeeEEEEEEECCEEEEEe
Confidence 28999999999999 999999998 7999999999999888764
No 22
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.80 E-value=9.1e-20 Score=146.02 Aligned_cols=93 Identities=11% Similarity=-0.010 Sum_probs=80.3
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCC-CeEEEEecccCCCc-ccCCcCCC--
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDP-SWLVIIGICTHLGC-VPIANAGD-- 150 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g-~~~a~~~~CtHlGc-~l~~~~~~-- 150 (292)
.+++|++|+.+.+.+.|.+++|.+ ..+| +++|++|.|||+|| +|+.+..+
T Consensus 12 ~~~el~~g~~~~~~~~g~~i~v~r--------------------------~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~ 65 (113)
T 2jo6_A 12 KIDDILPETGVCALLGDEQVAIFR--------------------------PYHSDQVFAISNIDPFFESSVLSRGLIAEH 65 (113)
T ss_dssp ETTTSCTTEEEEEEETTEEEEEEE--------------------------CSSSSCCEEEESSCSSSCCSCSTTSEEEEE
T ss_pred eHHHCCCCCeEEEEECCEEEEEEE--------------------------ECCCCEEEEEeCcCCCCCCcccCCeEEecc
Confidence 679999999999999999987754 3478 59999999999999 79876532
Q ss_pred -CC-eEEcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEe
Q psy6642 151 -WG-GYYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 151 -~~-~~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I 194 (292)
+. .+.||||||+||+ +|+++.+|+ .+|+.||++++++.|+|.+
T Consensus 66 ~g~~~i~CP~Hg~~Fd~~tG~~~~~P~-~~l~~~~v~v~~g~V~v~~ 111 (113)
T 2jo6_A 66 QGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYEARVKDGVVQLRG 111 (113)
T ss_dssp TTEEEEEETTTTEEEETTTTEETTTTT-TCCCEEEEEEETTEEEEEC
T ss_pred CCCcEEECCCCCCEEeCCCccCCCCCc-ccccEEeEEEECCEEEEEc
Confidence 22 7999999999999 999999998 8899999999999888764
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.79 E-value=2.3e-19 Score=147.69 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=85.9
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCC-CeEEEEecccCCCcc-cCCcCCC--
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDP-SWLVIIGICTHLGCV-PIANAGD-- 150 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g-~~~a~~~~CtHlGc~-l~~~~~~-- 150 (292)
.+++|++|+.+.+.+.|++++|.+ ..+| +++|++|.|||+||. |+.+..+
T Consensus 9 ~~~el~~g~~~~~~~~g~~i~v~r--------------------------~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~ 62 (130)
T 2jza_A 9 KLDDILPGTGVCALVEQQQIAVFR--------------------------PRNDEQVYAISNIDPFAQASVLSRGIVAEH 62 (130)
T ss_dssp ETTTSCTTBCCEEEETTEEEEEEB--------------------------CSSSSCCEEEBCCCTTTSSGGGTSSEEEES
T ss_pred EHHHCCCCCeEEEEECCcEEEEEE--------------------------ECCCCEEEEEeCcCCCCCCCcCCCccCccc
Confidence 678999999999999999887753 3356 899999999999995 9877432
Q ss_pred -C-CeEEcCCCCcEEcC-CCceecCCCCCCCCCCceEeecCceEEEeecccCCCCCCcccccc
Q psy6642 151 -W-GGYYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRR 210 (292)
Q Consensus 151 -~-~~~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr~ 210 (292)
+ ..|.||||||+||+ +|+++.+|+ .+|+.|+++++++.|+|.+ +...+.+++|..
T Consensus 63 ~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~L~~~~v~v~~g~V~V~~----~~~~~~~~~~~~ 120 (130)
T 2jza_A 63 QDDLWVASPLKKQHFRLYDGFCLEDGA-YSVAAYDTQVTNGNVQISI----ADSDVAVDNSQP 120 (130)
T ss_dssp SSSEEEECSSSCCEEETTTCCBSSCCS-SCCBCCCEEESSSEEEEEC----CCCCCCCCCCCC
T ss_pred CCCeEEECCCCCCEEeCCCcCCCCCCc-CcceEEEEEEECCEEEEEe----CCCCCCcccccc
Confidence 2 38999999999999 999999998 8899999999999888764 333455666654
No 24
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.63 E-value=2.8e-20 Score=154.18 Aligned_cols=75 Identities=33% Similarity=0.707 Sum_probs=66.9
Q ss_pred cCCC--eEEEEecccCCCcccCCcCCCCCeEEcCCCCcEEcCCCceecCCCCCCCCCCceEe-ecCceEEEeecccCCC
Q psy6642 126 KDPS--WLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQF-GDEGILIRMLAHSDIR 201 (292)
Q Consensus 126 ~~g~--~~a~~~~CtHlGc~l~~~~~~~~~~~CPcHGs~FD~~G~v~~gPa~~~L~~~p~~~-~~d~i~V~I~ahtD~~ 201 (292)
.+|+ ++|+++.|||+||+|.++. +.+.|.||||||+||.+|+++.+|+..+|+.|++++ +++.|+|..+...|++
T Consensus 48 ~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~~~L~~ypv~v~~~g~V~V~~~~e~d~~ 125 (133)
T 3azc_A 48 EDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFR 125 (133)
Confidence 4677 9999999999999999886 457899999999999999999999999999999999 9999998876665544
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.8e-18 Score=140.55 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=75.7
Q ss_pred eecCCCCCCCeEEEEE-cCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCC---
Q psy6642 74 VDLNLIPEGQSVTFKW-RGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAG--- 149 (292)
Q Consensus 74 v~~s~l~~g~~~~~~~-~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~--- 149 (292)
..+++|++|+.+.+.. .|+++.|. |..+|+++|++|.|||+|++|..+..
T Consensus 14 c~~~dL~~g~~~~~~~~~G~~v~l~--------------------------r~~dG~v~A~~n~CpH~ga~L~~~~~~~~ 67 (119)
T 4aiv_A 14 CAYDHLIPGRGVGVLLDDGSQVALF--------------------------RLDDGSVHAVGNVDPFSGAAVMSRGIVGD 67 (119)
T ss_dssp EEGGGSCTTCCEEEECTTSCEEEEE--------------------------ECTTSCEEEEESBCTTTCCBCGGGSEEEE
T ss_pred eEHHHcCCCCceEEEEcCCcEEEEE--------------------------EcCCCeEEEEECCCCCCCCccccCceecc
Confidence 3678999998887776 46777664 34579999999999999999876542
Q ss_pred --CCCeEEcCCCCcEEcC-CCceecCCCCCCCCCCceEeec-CceEEEe
Q psy6642 150 --DWGGYYCPCHGSHYDA-SGRIRKGPAPTNMEVPPYQFGD-EGILIRM 194 (292)
Q Consensus 150 --~~~~~~CPcHGs~FD~-~G~v~~gPa~~~L~~~p~~~~~-d~i~V~I 194 (292)
+...+.||+|||+||+ +|+|+.+|+ .+|+.||+++++ +.|+|..
T Consensus 68 ~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~-~~l~~ypv~ve~dG~V~V~~ 115 (119)
T 4aiv_A 68 RGGRAMVQSPILKQAFALDDGSCLDDPR-VSVPVYPARVTPEGRIQVAR 115 (119)
T ss_dssp ETTEEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEECTTSEEEEEE
T ss_pred ccCCCEEECCCCCCEEeCCCCcCcCCCC-CccceEEEEEEeCCEEEEec
Confidence 1235899999999998 999999887 589999999984 5677653
No 26
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.69 E-value=8e-18 Score=142.50 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=76.0
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCC---
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDW--- 151 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~--- 151 (292)
.+++|++|+.+.+.+.|.+++|.+ .+|+++|++|.|||+||+|+++..++
T Consensus 22 ~~~el~~g~~~~~~~~g~~i~v~r---------------------------~~G~v~A~~n~CpH~g~~L~~G~~~~~~g 74 (157)
T 3d89_A 22 REEDIRKSERMTAVVHDREVVIFY---------------------------HKGEYHAMDIRCYHSGGPLHLGEIEDFNG 74 (157)
T ss_dssp EHHHHHHHSEEEEEETTEEEEEEE---------------------------ETTEEEEEESBCTTTCCBGGGSEEEEETT
T ss_pred EHHHCCCCCeEEEEECCEEEEEEE---------------------------ECCEEEEEeCCCCCCCCCCcCCEecCcCC
Confidence 567888888888888888887653 37899999999999999999875432
Q ss_pred -CeEEcCCCCcEEcC-CCceec---CC----CC-------CCCCCCceEeecCceEEEe
Q psy6642 152 -GGYYCPCHGSHYDA-SGRIRK---GP----AP-------TNMEVPPYQFGDEGILIRM 194 (292)
Q Consensus 152 -~~~~CPcHGs~FD~-~G~v~~---gP----a~-------~~L~~~p~~~~~d~i~V~I 194 (292)
+.|.||||||+||+ +|+++. +| +. ..|+.|++++++|.|+|.+
T Consensus 75 ~~~i~CP~Hgw~Fdl~tG~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~ 133 (157)
T 3d89_A 75 QSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTL 133 (157)
T ss_dssp EEEEECTTTCCEEETTTCEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEEC
T ss_pred CCEEECCCCCCEEecCCcCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEe
Confidence 58999999999999 999985 24 21 4789999999999888765
No 27
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.69 E-value=1.4e-17 Score=145.35 Aligned_cols=70 Identities=39% Similarity=0.625 Sum_probs=62.8
Q ss_pred ccccceeeehhHHHHHHHHHHhhhHhhhhhhhccCCCHHhhhccceEEecCCCCCCceEEEEECCeeeEEEcC
Q psy6642 220 ETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292 (292)
Q Consensus 220 ~~~rr~f~~~~~~~~~~~g~~~~~~~~~~~v~~~~p~~~~~a~~~~evdls~i~~G~~~~~~WrgkPvfv~~R 292 (292)
+.+||+|||++++++++++ ++++++||+++|+|+++++|+++++||+++|++||.++|+|+||||||+||
T Consensus 8 ~~~RR~Fl~~~~~~~~~~~---a~~~~~p~v~~~~p~~~~~a~~~v~v~ls~l~~G~~~~v~~~g~pv~i~rr 77 (187)
T 2qjy_C 8 AGTRRDFLYYATAGAGAVA---TGAAVWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 77 (187)
T ss_dssp -CHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTSCCTTTSCCCCEEEECTTCCTTEEEEEEETTEEEEEEEC
T ss_pred CCcHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCchhhcccccEEEEHHHCCCCCeEEEEECCEEEEEEEC
Confidence 4579999999887766555 457899999999999999999999999999999999999999999999986
No 28
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=99.69 E-value=9.1e-17 Score=154.17 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=90.0
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCeE
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGY 154 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~~ 154 (292)
..++|++|+.+.+.+.|.+++|. |+.+|+++|+.+.|||+||+|+.+.++++.|
T Consensus 31 ~~~el~~g~~~~~~~~g~~vvl~--------------------------R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i 84 (386)
T 2zyl_A 31 VAKDYLEGKPHGVEAFGTKLVVF--------------------------ADSHGDLKVLDGYCRHMGGDLSEGTVKGDEV 84 (386)
T ss_dssp EGGGGCSSSCEEEEETTEEEEEE--------------------------ECTTSCEEEEESBCTTTCCBGGGSEEETTEE
T ss_pred EHHHCCCCCeEEEEECCeEEEEE--------------------------ECCCCCEEEEcCcCCCCCCCCCCCcccCCEE
Confidence 56888889999999999988764 3458999999999999999999887767899
Q ss_pred EcCCCCcEEcCCCceecCCCC------CCCCCCceEeecCceEEEeecccC-----CCCCCccccccCC
Q psy6642 155 YCPCHGSHYDASGRIRKGPAP------TNMEVPPYQFGDEGILIRMLAHSD-----IRTPDFSKYRRDR 212 (292)
Q Consensus 155 ~CPcHGs~FD~~G~v~~gPa~------~~L~~~p~~~~~d~i~V~I~ahtD-----~~~P~F~~yr~~~ 212 (292)
.||||||+||.+|+|+.+|+. ..|+.||+++.+|.|+|.+-.... ...|+++.|..+.
T Consensus 85 ~CpyHgw~f~~~G~~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~ 153 (386)
T 2zyl_A 85 ACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDE 153 (386)
T ss_dssp ECTTTCCEEETTSBEEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTT
T ss_pred EeCCCCCEECCCCCccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCC
Confidence 999999999999999999873 468899999999988877632211 2356666665443
No 29
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=99.68 E-value=6.7e-17 Score=153.10 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=88.0
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCCCCeE
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGY 154 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~~~~~ 154 (292)
..++| +|+.+.+.+.|.+++|.+ ..+|+++|+.|.|||+||+|+.+.++++.|
T Consensus 14 ~~~el-~g~~~~~~~~g~~vvv~R--------------------------~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i 66 (349)
T 3gke_A 14 LPEEL-SEKPLGRTILDTPLALYR--------------------------QPDGVVAALLDICPHRFAPLSDGILVNGHL 66 (349)
T ss_dssp CGGGC-CSSCEEEEETTEEEEEEE--------------------------CTTSCEEEEESSCTTTCCCGGGCEEETTEE
T ss_pred EHHHC-CCCeEEEEECCEEEEEEE--------------------------cCCCcEEEEeCcCCCCCcCCccCCccceEE
Confidence 46788 899999999999987753 458999999999999999999987777899
Q ss_pred EcCCCCcEEcCCCceecCCC-------CCCCCCCceEeecCceEEEeeccc--CC-CCCCcccccc
Q psy6642 155 YCPCHGSHYDASGRIRKGPA-------PTNMEVPPYQFGDEGILIRMLAHS--DI-RTPDFSKYRR 210 (292)
Q Consensus 155 ~CPcHGs~FD~~G~v~~gPa-------~~~L~~~p~~~~~d~i~V~I~aht--D~-~~P~F~~yr~ 210 (292)
.||||||+||.+|+|+.+|. ...|+.||+++.+|.|+|.+.... +. ..|+|+.+..
T Consensus 67 ~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~ 132 (349)
T 3gke_A 67 QCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVD 132 (349)
T ss_dssp ECTTTCCEECTTCCEEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGC
T ss_pred EECCCCCEEcCCCCccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCC
Confidence 99999999999999999983 457899999999987776653322 11 2577765443
No 30
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=99.65 E-value=5.6e-16 Score=148.56 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=88.7
Q ss_pred eecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcC--CCC
Q psy6642 74 VDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANA--GDW 151 (292)
Q Consensus 74 v~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~--~~~ 151 (292)
...++|++|+.+.+.+.|.+++|. | .+|+++|+.|.|||+||+|+.+. +++
T Consensus 36 ~~~~ELp~G~~~~v~i~G~~VvV~--------------------------R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~ 88 (389)
T 3gkq_A 36 RLSAEVAEASPVPVQLLGEKVLLN--------------------------R-VDGVVHAIADRCLHRGVTLSDKVECYSK 88 (389)
T ss_dssp EEGGGSCBTCCEEEEETTEEEEEE--------------------------E-ETTEEEEEESSCTTTCCCGGGGCCCSBT
T ss_pred EEHHHCCCCCeEEEEECCEEEEEE--------------------------E-eCCeEEEeCCcCCCCCCCccCCcccCcC
Confidence 367899999999999999998764 3 47999999999999999999885 356
Q ss_pred CeEEcCCCCcEEcC-CCceecCCC--------CCCCCCCceEeecCceEEEeecccCCCCCCccccccCC
Q psy6642 152 GGYYCPCHGSHYDA-SGRIRKGPA--------PTNMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRDR 212 (292)
Q Consensus 152 ~~~~CPcHGs~FD~-~G~v~~gPa--------~~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr~~~ 212 (292)
+.|.||||||+||+ +|+|+..|+ ..+|..|++++.+|.|+|.+. |...|.+.++..+.
T Consensus 89 ~~I~CPyHGW~Fdl~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lg---d~~~ppL~e~l~~~ 155 (389)
T 3gkq_A 89 ATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVG---DQEPHDLAEDVPPG 155 (389)
T ss_dssp TEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEES---SSCCCCGGGGSCTT
T ss_pred CEEECCCCCCEEECCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecC---CCCCCCchhhcchh
Confidence 89999999999999 999998664 357899999999998877652 33346677665543
No 31
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=99.64 E-value=6.4e-16 Score=148.45 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=87.3
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcC--CCCC
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANA--GDWG 152 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~--~~~~ 152 (292)
..++|++|+.+.+.+.|.+++|. | .+|+++|+.|.|||+||+|+.+. ++++
T Consensus 40 ~~~ELp~G~~~~v~i~G~~VvV~--------------------------R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~ 92 (394)
T 3gcf_A 40 FDHELAEGEFVAVTMLGEKVLLT--------------------------R-AKGEVKAIADGCAHRGVPFSKEPLCFKAG 92 (394)
T ss_dssp EGGGCCBTCEEEEEETTEEEEEE--------------------------E-ETTEEEEEESSCTTTCCCGGGSCBCSSTT
T ss_pred EHHHCCCCCeEEEEECCEEEEEE--------------------------E-eCCeEEEeeCcCCCCCCCCcCCcccCcCC
Confidence 67899999999999999998764 3 47999999999999999999875 3568
Q ss_pred eEEcCCCCcEEcC-CCceecCCC--------CCCCCCCceEeecCceEEEeecccCCCCCCccccccC
Q psy6642 153 GYYCPCHGSHYDA-SGRIRKGPA--------PTNMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRD 211 (292)
Q Consensus 153 ~~~CPcHGs~FD~-~G~v~~gPa--------~~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr~~ 211 (292)
.|.||||||+||+ +|+|+.+|+ ...|+.|++++.+|.|+|.+. |...|.+.++..+
T Consensus 93 ~I~CPyHGW~Fdl~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lg---d~~~ppL~e~L~~ 157 (394)
T 3gcf_A 93 TVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIG---DEEPHALSEDLPP 157 (394)
T ss_dssp EEECTTTCEEEETTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEES---SSCCCCGGGGSCT
T ss_pred EEECCCCCcEEECCCCceeccCCCcccccccccCceEEEEEEECCcEEEecC---CCCCCCchhhcch
Confidence 9999999999999 999998764 456889999999998877652 2233666665543
No 32
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=99.63 E-value=4.3e-16 Score=150.84 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=85.8
Q ss_pred ecCCCC-CCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccC-CcCCCCC
Q psy6642 75 DLNLIP-EGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPI-ANAGDWG 152 (292)
Q Consensus 75 ~~s~l~-~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~-~~~~~~~ 152 (292)
..++|+ +|+.+.+.+.|.+++|.+ +.+|+++|+.|+|||+|++|+ .+.++.+
T Consensus 49 ~~~elp~~G~~~~~~i~g~~vvv~R--------------------------~~dG~v~A~~n~CpHrga~L~~~g~~~~~ 102 (412)
T 3vca_A 49 PVCQLAKAGSYTTLRVGAYEVVIVR--------------------------SRDGEVRAFHNSCRHRGSLICKARQGQVA 102 (412)
T ss_dssp EGGGGCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESSCTTTCCCSCCSSEEECS
T ss_pred EHHHCCCCCCeEEEEECCEEEEEEE--------------------------cCCCCEEEecccCCCCCCEeecccccCCC
Confidence 568888 588889999999987753 458999999999999999998 5656668
Q ss_pred eEEcCCCCcEEcCCCceecCCCC--------CCCCCCceEeecCceEEEeecccCCCCCCccccc
Q psy6642 153 GYYCPCHGSHYDASGRIRKGPAP--------TNMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYR 209 (292)
Q Consensus 153 ~~~CPcHGs~FD~~G~v~~gPa~--------~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr 209 (292)
.|.||||||+||++|+|+.+|+. .+|+.+++++.+|.|+|.+ +...|+|++|.
T Consensus 103 ~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~----~~~~p~l~~~l 163 (412)
T 3vca_A 103 KLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICL----SDTPPDFQTFA 163 (412)
T ss_dssp SEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEEC----SSSCCCCHHHH
T ss_pred EEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEe----cCCCCCHHHHh
Confidence 99999999999999999999863 4688899999888777664 23346777665
No 33
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=99.62 E-value=6.6e-16 Score=149.44 Aligned_cols=105 Identities=20% Similarity=0.252 Sum_probs=85.6
Q ss_pred ecCCCC-CCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCC-cCCCCC
Q psy6642 75 DLNLIP-EGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIA-NAGDWG 152 (292)
Q Consensus 75 ~~s~l~-~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~-~~~~~~ 152 (292)
..++|+ +|+.+++.+.|.+++|.+ +.+|+++|+.|+|||+|++|+. +.++.+
T Consensus 47 ~~~elp~~G~~~~~~i~g~~vvv~R--------------------------~~dG~v~A~~n~C~Hrga~L~~~g~~~~~ 100 (409)
T 3n0q_A 47 PACELDKPGSYVTHQVGNYNVIIVR--------------------------GADNVIRAFHNACRHRGSVICKAKKGNNP 100 (409)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEEE--------------------------CTTSCEEEEESCCTTTCCCSCCSSEEECS
T ss_pred EHHHCCCCCCeEEEEECCEEEEEEE--------------------------cCCCCEEeecCcCCcCcCCccCcCccCCC
Confidence 578897 588899999999988753 4689999999999999999986 556668
Q ss_pred eEEcCCCCcEEcCCCceecCCCC--------CCCCCCceEeecCceEEEeecccCCCCCCccccc
Q psy6642 153 GYYCPCHGSHYDASGRIRKGPAP--------TNMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYR 209 (292)
Q Consensus 153 ~~~CPcHGs~FD~~G~v~~gPa~--------~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr 209 (292)
.|.||||||+||.+|+|+.+|+. .+|+.+++++.+|.|+|.+ +...|+|++|.
T Consensus 101 ~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~----~~~~~~l~~~l 161 (409)
T 3n0q_A 101 KLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICL----ADEAPDFERFA 161 (409)
T ss_dssp SEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEEC----SSSCCCCHHHH
T ss_pred EEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEe----CCCCCChHHhh
Confidence 99999999999999999998852 4788888988888777654 33346676664
No 34
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=99.62 E-value=7.8e-16 Score=150.39 Aligned_cols=106 Identities=17% Similarity=0.267 Sum_probs=84.2
Q ss_pred ecCCCC-CCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCC-CCC
Q psy6642 75 DLNLIP-EGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAG-DWG 152 (292)
Q Consensus 75 ~~s~l~-~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~-~~~ 152 (292)
..++|+ +|..+++.+.+.+|+|. |+.+|+++|+.|.|||+||+|+.+.. +.+
T Consensus 43 ~~~el~~~g~~~~~~~~~~~vvv~--------------------------R~~~G~v~a~~n~CpHrga~L~~g~~g~~~ 96 (454)
T 2gbw_A 43 HESLVPKPGDFITTYMAEDKVILS--------------------------HQSDGTFRAFINSCSHRGNQICHADSGNAK 96 (454)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEE--------------------------ECTTSCEEEEESSCTTTCCCSCCCSEEECS
T ss_pred EHHHCCCCCCeEEEEECCeEEEEE--------------------------EcCCCCEEEEeccCCCCCCCCcccccCCcC
Confidence 568888 58888888888888764 34689999999999999999998653 457
Q ss_pred eEEcCCCCcEEcCCCceecCCCCC------------CCCCCceEeecCceEEEeecccCCCCCCcccccc
Q psy6642 153 GYYCPCHGSHYDASGRIRKGPAPT------------NMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRR 210 (292)
Q Consensus 153 ~~~CPcHGs~FD~~G~v~~gPa~~------------~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr~ 210 (292)
.|.||||||+||.+|+|+.+|+.. .|..+++++.+|.|+|.+ +...|+|++|..
T Consensus 97 ~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~----~~~~p~~~~~l~ 162 (454)
T 2gbw_A 97 AFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCH----DPEAPSLEDYLG 162 (454)
T ss_dssp EEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEEC----CTTCCCHHHHHG
T ss_pred EEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEe----CCCCCCHHHHhh
Confidence 899999999999999999998743 366778888888776653 333577887754
No 35
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=99.61 E-value=9.8e-16 Score=149.34 Aligned_cols=106 Identities=23% Similarity=0.355 Sum_probs=85.3
Q ss_pred ecCCCC-CCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCC-CCC
Q psy6642 75 DLNLIP-EGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAG-DWG 152 (292)
Q Consensus 75 ~~s~l~-~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~-~~~ 152 (292)
..++|+ +|..+++.+.+.+++|. |+.+|+++|+.|.|||+|++|+.+.. +.+
T Consensus 42 ~~~el~~~g~~~~~~~~~~~vvv~--------------------------R~~~G~v~a~~n~CpHrga~L~~g~~g~~~ 95 (447)
T 2bmo_A 42 HDSLIPSPGDYVKAKMGVDEVIVS--------------------------RQNDGSVRAFLNVCRHRGKTLVHAEAGNAK 95 (447)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEE--------------------------ECTTSCEEEEESBCTTTCCBCCCSSEEECS
T ss_pred EHHHCCCCCCeEEEEECCeeEEEE--------------------------ECCCCCEEEEeccCcCCCCCccccccCCcC
Confidence 568888 58888888888888764 34689999999999999999988753 447
Q ss_pred eEEcCCCCcEEcCCCceecCCCC------------CCCCCCc-eEeecCceEEEeecccCCCCCCcccccc
Q psy6642 153 GYYCPCHGSHYDASGRIRKGPAP------------TNMEVPP-YQFGDEGILIRMLAHSDIRTPDFSKYRR 210 (292)
Q Consensus 153 ~~~CPcHGs~FD~~G~v~~gPa~------------~~L~~~p-~~~~~d~i~V~I~ahtD~~~P~F~~yr~ 210 (292)
.|.||||||+||.+|+|+..|+. ..|..++ +++.+|.|+|.+ +...|.|++|..
T Consensus 96 ~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~----~~~~~~l~~~l~ 162 (447)
T 2bmo_A 96 GFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCF----DAEAPPLIDYLG 162 (447)
T ss_dssp EEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEES----CTTCCCHHHHHT
T ss_pred eEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEc----CCCCCCHHHHhc
Confidence 89999999999999999998863 3688887 988888776653 334577877754
No 36
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=99.59 E-value=5.6e-15 Score=141.73 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=84.2
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCC--CCC
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAG--DWG 152 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~--~~~ 152 (292)
..++|++|+.+.+.+.|.+++|. | .+|+++|+.|.|||+||+|+.+.. +++
T Consensus 34 ~~~el~~g~~~~~~~~g~~vvl~--------------------------R-~~G~v~a~~n~CpHrga~L~~g~~~~~~~ 86 (392)
T 2de6_A 34 FSKEINEGEPKTLKLLGENLLVN--------------------------R-IDGKLYCLKDRCLHRGVQLSVKVECKTKS 86 (392)
T ss_dssp EGGGSCBTCCEEEEETTEEEEEE--------------------------E-ETTEEEEEESSCTTTCCCGGGGCCCCSTT
T ss_pred EHHHCCCCCeEEEEECCEEEEEE--------------------------E-eCCEEEEEeCcCCCCCCCCcCCcccCCCC
Confidence 56889889999999999998764 4 379999999999999999998753 458
Q ss_pred eEEcCCCCcEEcC-CCceecCCC--------CCCCCCCceEeecCceEEEeecccCCCCCCccccc
Q psy6642 153 GYYCPCHGSHYDA-SGRIRKGPA--------PTNMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYR 209 (292)
Q Consensus 153 ~~~CPcHGs~FD~-~G~v~~gPa--------~~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr 209 (292)
.|.||||||+||. +|+|+.+|+ ...|..|++++.+|.|+|.+.. ...|.+.++.
T Consensus 87 ~i~CpyHgw~f~~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~---~~~~~l~~~l 149 (392)
T 2de6_A 87 TITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGD---GDPPPLARDT 149 (392)
T ss_dssp EEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESS---SSCCCGGGGS
T ss_pred EEEeCCCCCEEcCCCCccccccCCccccccccCCCceEeEEEECCEEEEEeCC---CCCCChhHhc
Confidence 9999999999998 999998754 2478899999999988776522 1235555544
No 37
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=99.58 E-value=3.7e-15 Score=145.38 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=79.8
Q ss_pred ecCCCCCCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcC--CCCC
Q psy6642 75 DLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANA--GDWG 152 (292)
Q Consensus 75 ~~s~l~~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~--~~~~ 152 (292)
..++|++|+.+.+.+.|.+++|. | .+|+++|+.|.|||+||+|+.+. ++++
T Consensus 49 ~~~el~~g~~~~~~~~g~~vvl~--------------------------r-~~G~v~a~~n~CpHrga~L~~g~~~~~~~ 101 (446)
T 1z01_A 49 FTHELEEDQVQGIQICGVPIVLR--------------------------R-VNGKVFALKDQCLHRGVRLSEKPTCFTKS 101 (446)
T ss_dssp EGGGSCBTCEEEEEETTEEEEEE--------------------------E-ETTEEEEEESSCTTTCCCGGGSCCCSSTT
T ss_pred EHHHCCCCCeEEEEECCEEEEEE--------------------------E-eCCEEEEEeCcCCCCcCCCCCCccCCCCC
Confidence 56888889999999999988764 3 47999999999999999999885 4568
Q ss_pred eEEcCCCCcEEcC-CCceecCCC--------CCCCCCCceEeecCceEEEee
Q psy6642 153 GYYCPCHGSHYDA-SGRIRKGPA--------PTNMEVPPYQFGDEGILIRML 195 (292)
Q Consensus 153 ~~~CPcHGs~FD~-~G~v~~gPa--------~~~L~~~p~~~~~d~i~V~I~ 195 (292)
.|.||||||+||+ +|+|+.+|+ ...|..|++++.+|.|+|.+.
T Consensus 102 ~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~ 153 (446)
T 1z01_A 102 TISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVR 153 (446)
T ss_dssp EEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEEC
T ss_pred EEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEEECCEEEEEeC
Confidence 9999999999998 999998764 246888999998988877653
No 38
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=99.58 E-value=2.5e-15 Score=147.40 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=80.5
Q ss_pred ecCCCCC-CCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCCC-CC
Q psy6642 75 DLNLIPE-GQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAGD-WG 152 (292)
Q Consensus 75 ~~s~l~~-g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~~-~~ 152 (292)
..++|++ |..+++.+.|.+++|. |+.+|+++|+.|+|||+||+|+.+... .+
T Consensus 51 ~~~el~~~g~~~~~~~~g~~vvv~--------------------------R~~~G~v~a~~n~C~Hrga~L~~g~~~~~~ 104 (470)
T 2b1x_A 51 HESEIPERGDYVVRYISEDQFIVC--------------------------RDEGGEIRGHLNACRHRGMQVCRAEMGNTS 104 (470)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEE--------------------------ECTTSCEEEEESSCTTTCCCSCCSSEEECS
T ss_pred eHHHCCCCCCeEEEEECCeEEEEE--------------------------EcCCCCEEEEecccCCCCCEeeccCcCCCC
Confidence 5688885 6677888888888765 345899999999999999999887543 36
Q ss_pred eEEcCCCCcEEcCCCceecCCCCCC----------CCCCce-Eee--cCceEEEeecccCCCCCCcccccc
Q psy6642 153 GYYCPCHGSHYDASGRIRKGPAPTN----------MEVPPY-QFG--DEGILIRMLAHSDIRTPDFSKYRR 210 (292)
Q Consensus 153 ~~~CPcHGs~FD~~G~v~~gPa~~~----------L~~~p~-~~~--~d~i~V~I~ahtD~~~P~F~~yr~ 210 (292)
.|.||||||+||.+|+|+.+|+... +..+++ +++ +|.|+|.+ |...|.|++|..
T Consensus 105 ~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~----~~~~~~~~~~l~ 171 (470)
T 2b1x_A 105 HFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSL----DPHADSLEDYLG 171 (470)
T ss_dssp EEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEES----CTTCCCHHHHHG
T ss_pred EEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEe----CCCCCCHHHHhc
Confidence 8999999999999999999997421 345566 555 67666553 333567777754
No 39
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.58 E-value=1.6e-15 Score=148.53 Aligned_cols=106 Identities=23% Similarity=0.327 Sum_probs=82.1
Q ss_pred ecCCCCC-CCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcCC-CCC
Q psy6642 75 DLNLIPE-GQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANAG-DWG 152 (292)
Q Consensus 75 ~~s~l~~-g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~~-~~~ 152 (292)
..++|++ |..+++.+.+.+++|. |+.+|+++|+.|.|||+||+|+.+.. +.+
T Consensus 61 ~~~el~~~g~~~~~~i~~~~vvv~--------------------------R~~~G~v~a~~n~CpHrga~L~~g~~g~~~ 114 (460)
T 1uli_A 61 HETQIPKAGDFMTNYMGEDPVMVV--------------------------RQKNGEIRVFLNQCRHRGMRICRADGGNAK 114 (460)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEE--------------------------ECTTSCEEEEESCCTTTCCCSCCSSEEECS
T ss_pred EHHHCCCCCCeEEEEECCeEEEEE--------------------------EcCCCCEEEEeeeCCCCCCCCccccCCCCC
Confidence 5678885 6667788888887764 34689999999999999999988753 347
Q ss_pred eEEcCCCCcEEcCCCceecCCCC-----------CCCCCCceEeecCceEEEeecccCCCCCCcccccc
Q psy6642 153 GYYCPCHGSHYDASGRIRKGPAP-----------TNMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRR 210 (292)
Q Consensus 153 ~~~CPcHGs~FD~~G~v~~gPa~-----------~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr~ 210 (292)
.|.||||||+||.+|+|+.+|+. ..|..+++++.+|.|+|.+ +...|.|++|..
T Consensus 115 ~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~----~~~~p~l~~~l~ 179 (460)
T 1uli_A 115 SFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANW----DADAPDLDTYLG 179 (460)
T ss_dssp CEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEEC----CTTSCCHHHHHT
T ss_pred EEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEe----CCCCCCHHHHhc
Confidence 89999999999999999999863 2366778888888776653 334577777744
No 40
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=99.52 E-value=1.5e-14 Score=141.77 Aligned_cols=107 Identities=24% Similarity=0.360 Sum_probs=80.9
Q ss_pred ecCCCC-CCCeEEEEEcCeeEEEEeCChhhhhhcccccccccCCCCcccccccCCCeEEEEecccCCCcccCCcC-CCCC
Q psy6642 75 DLNLIP-EGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTHLGCVPIANA-GDWG 152 (292)
Q Consensus 75 ~~s~l~-~g~~~~~~~~g~pv~i~~~t~~~i~~~~~v~~~~l~dp~~~~~R~~~g~~~a~~~~CtHlGc~l~~~~-~~~~ 152 (292)
..++|+ +|..+++.+.+.+|+|. |+.+|+++|+.|.|+|+|++|+.+. ++.+
T Consensus 63 ~~~elp~~G~~~~~~i~~~~vvv~--------------------------R~~dG~v~A~~n~C~Hrga~L~~g~~g~~~ 116 (457)
T 3gzx_A 63 HETHIPKIGDYLTTYMGEDPVIMV--------------------------RQKDQSIKVFLNQCRHRGMRIVRSDGGNAK 116 (457)
T ss_dssp EGGGSCSTTEEEEEEETTEEEEEE--------------------------ECTTSCEEEEESCCTTTCCCSCCSSEEECS
T ss_pred EHHHcCCCCCeEEEEECCEEEEEE--------------------------ECCCCeEEEEeCcCCCCCcCccCCCCCcCC
Confidence 567887 57788888888888764 3468999999999999999999875 4558
Q ss_pred eEEcCCCCcEEcCCCceecCCCCC------------------CCCCCceEeecCceEEEeecccCCCCCCccccccC
Q psy6642 153 GYYCPCHGSHYDASGRIRKGPAPT------------------NMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRD 211 (292)
Q Consensus 153 ~~~CPcHGs~FD~~G~v~~gPa~~------------------~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr~~ 211 (292)
.|.||||||+||.+|+|+..|+.. .|..++++..++-|+|. . |...|+|++|..+
T Consensus 117 ~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~--~--~~~ap~l~e~lg~ 189 (457)
T 3gzx_A 117 AFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFAN--W--DPEAPDLKTYLSD 189 (457)
T ss_dssp EEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEE--S--CTTSCCHHHHTTT
T ss_pred EEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEe--c--CCCCCChHHHHhh
Confidence 999999999999999999988631 23344555556655443 3 3345778888653
No 41
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=98.52 E-value=1.5e-08 Score=87.29 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=55.8
Q ss_pred ccccceeeehhHHHHHHHHHHhhhHhhhhhhhccCCCHHhhhc-cceEEe-----------cCCCCCCceEEEE-ECCee
Q psy6642 220 ETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAM-ATIEVD-----------LNLIPEGQSVTFK-WRGKP 286 (292)
Q Consensus 220 ~~~rr~f~~~~~~~~~~~g~~~~~~~~~~~v~~~~p~~~~~a~-~~~evd-----------ls~i~~G~~~~~~-WrgkP 286 (292)
+.+||+||++++++++++++ .++++||+++|+|++...+. +.+++| ++.|++|+...+. +.|+|
T Consensus 12 ~~~RR~Fl~~~~~~~~~~~~---~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~~~~~g~~ 88 (179)
T 1vf5_D 12 DMGRRQFMNLLAFGTVTGVA---LGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDP 88 (179)
T ss_dssp CCCCCTTSCTTHHHHHHHHH---HHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEESCSSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEEeccCCCe
Confidence 35799999998877665554 46789999999999987755 467777 6789999999997 99999
Q ss_pred eEEEc
Q psy6642 287 LFIRH 291 (292)
Q Consensus 287 vfv~~ 291 (292)
+++.+
T Consensus 89 ~~lv~ 93 (179)
T 1vf5_D 89 TYIVV 93 (179)
T ss_dssp EECCB
T ss_pred EEEEE
Confidence 98755
No 42
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=95.60 E-value=0.0038 Score=53.32 Aligned_cols=68 Identities=9% Similarity=0.130 Sum_probs=24.7
Q ss_pred cccccceeeehhHHHHHHHHHHhhhHhhhhhhhccCCC---HHhhhccceEE-ecCCCCCCceEEEEEC--CeeeEEEc
Q psy6642 219 EETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSAS---ADVLAMATIEV-DLNLIPEGQSVTFKWR--GKPLFIRH 291 (292)
Q Consensus 219 ~~~~rr~f~~~~~~~~~~~g~~~~~~~~~~~v~~~~p~---~~~~a~~~~ev-dls~i~~G~~~~~~Wr--gkPvfv~~ 291 (292)
...+||.||- +++++++++ +.+.+|+-..+.++ ..++....+.| +++.|++|+.++|+|. ++||+|.|
T Consensus 8 ~~~~rr~fl~---~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R 81 (175)
T 4aay_B 8 VDIGRRQFLR---GGALAAAGA--TAAVFGVGAPQARAATAAAGVEYPANRLANISELTLNEPLDVAYPDEDAAGVLLK 81 (175)
T ss_dssp -----------------------------------------CCSCCCCCEEEEEGGGCBBTBCEEEESSSTTSEEEEEE
T ss_pred ccccHHHHhh---hhHHhhhhe--eEeccccccccccccccCcccCCCcceEEEHHHCCCCCEEEEEECCCCCEEEEEE
Confidence 3568999996 322222221 12234443333332 11112223344 8999999999999996 57999986
No 43
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=85.66 E-value=0.7 Score=31.18 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=12.9
Q ss_pred CcCchhhHHHHHHhHH
Q psy6642 27 ETQRKAFTYMIAGGSS 42 (292)
Q Consensus 27 ~~~RR~fl~~atG~~~ 42 (292)
+++||+|+..++..++
T Consensus 8 dm~RRqfln~l~~G~~ 23 (49)
T 1q90_R 8 DMNKRNIMNLILAGGA 23 (49)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 7899999998886443
No 44
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=83.39 E-value=0.39 Score=32.45 Aligned_cols=36 Identities=6% Similarity=0.173 Sum_probs=24.1
Q ss_pred ccccceeeehhHHHHHHHHHHhhhHhhhhhhhccCCCHH
Q psy6642 220 ETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASAD 258 (292)
Q Consensus 220 ~~~rr~f~~~~~~~~~~~g~~~~~~~~~~~v~~~~p~~~ 258 (292)
+.+||.|+.+++.++++.- +...++|++..+-|...
T Consensus 8 dm~RRqfln~l~~G~~a~~---a~~~~~P~v~ffvpP~~ 43 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLP---ITTLALGYGAFFVPPSS 43 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHSCC--
T ss_pred ChHHHHHHHHHHHHHHHHH---HHHHHHhhheeecCCcc
Confidence 4679999988876443332 34678999998766543
No 45
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=72.82 E-value=2.7 Score=26.18 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=8.1
Q ss_pred cCchhhHHHH
Q psy6642 28 TQRKAFTYMI 37 (292)
Q Consensus 28 ~~RR~fl~~a 37 (292)
.+||+||+..
T Consensus 3 lsRR~FLK~~ 12 (35)
T 2pq4_B 3 LSRRSFMKAN 12 (35)
T ss_dssp CCSHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5899999843
No 46
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=37.38 E-value=12 Score=27.29 Aligned_cols=21 Identities=33% Similarity=0.887 Sum_probs=15.4
Q ss_pred EEecCCCCCCceEEE--EECCeee
Q psy6642 266 EVDLNLIPEGQSVTF--KWRGKPL 287 (292)
Q Consensus 266 evdls~i~~G~~~~~--~WrgkPv 287 (292)
++||.++ +|+.+.+ .|+||||
T Consensus 25 ~fDl~Gm-EGeV~~~v~~wkGr~I 47 (75)
T 1dj7_B 25 AFDLQGM-EGEVAAVLTEWQGRPI 47 (75)
T ss_dssp CEECTTC-EEEEEEECSEETTEEC
T ss_pred CcccccC-EEEEEEEEeeccCcEe
Confidence 4788765 5776665 5999997
No 47
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=33.99 E-value=38 Score=28.73 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=29.2
Q ss_pred cCCCHHhhhccceEEecCC--CCCCceEEEEECCeeeEEEc
Q psy6642 253 MSASADVLAMATIEVDLNL--IPEGQSVTFKWRGKPLFIRH 291 (292)
Q Consensus 253 ~~p~~~~~a~~~~evdls~--i~~G~~~~~~WrgkPvfv~~ 291 (292)
..|.+....+.-+.+||+. +++|+.....+.|.|++|.|
T Consensus 125 qGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~i~R 165 (206)
T 1x31_C 125 EGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLWR 165 (206)
T ss_dssp ESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEETTEEEEEEE
T ss_pred ECHhHHHHHHhhCcccCCcccCCCCcEEEEEEcCeEEEEEE
Confidence 4476654433334578886 99999999999999999976
No 48
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=32.52 E-value=45 Score=28.39 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=29.2
Q ss_pred cCCCHHhhhccceEEecCC--CCCCceEEEEECCeeeEEEc
Q psy6642 253 MSASADVLAMATIEVDLNL--IPEGQSVTFKWRGKPLFIRH 291 (292)
Q Consensus 253 ~~p~~~~~a~~~~evdls~--i~~G~~~~~~WrgkPvfv~~ 291 (292)
..|.+...-+.-+.+||+. +++|+.....+.|.|++|.|
T Consensus 127 qGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g~~v~v~R 167 (210)
T 2gag_C 127 TGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVANIPVLLWR 167 (210)
T ss_dssp ESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEEE
T ss_pred ECHhHHHHHHhhCcccCCcccCCCCcEEEEEECCEEEEEEE
Confidence 4476654433334578885 99999999999999999875
No 49
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=29.72 E-value=15 Score=36.85 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=0.0
Q ss_pred ccccceeeehhHHHHHHHHH
Q psy6642 220 ETQRKAFTYMIAGGSSVVGM 239 (292)
Q Consensus 220 ~~~rr~f~~~~~~~~~~~g~ 239 (292)
..+||+|+-..+++.+++|+
T Consensus 17 ~~~rr~~~~~~a~~~~~~~~ 36 (638)
T 3sbq_A 17 GLSRRGFLGASAVTGAAVAA 36 (638)
T ss_dssp --------------------
T ss_pred Ccchhhhhchhhhhhhhhhh
Confidence 56799999554444333333
No 50
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=25.82 E-value=24 Score=27.71 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=20.6
Q ss_pred CCC-HHhhhccceEEecCC---------CCCCceEEEEECCe
Q psy6642 254 SAS-ADVLAMATIEVDLNL---------IPEGQSVTFKWRGK 285 (292)
Q Consensus 254 ~p~-~~~~a~~~~evdls~---------i~~G~~~~~~Wrgk 285 (292)
+|. +...+...++|++.. |++|+.+++.+.++
T Consensus 36 ~p~~~~~~~~~~~~V~~~~~~F~P~~i~V~~GdtV~~~N~d~ 77 (132)
T 3c75_A 36 KPVAAADVPADAVVVGIEKMKYLTPEVTIKAGETVYWVNGEV 77 (132)
T ss_dssp SCEEGGGSCTTSEEEEEETTEESSSEEEECTTCEEEEEECSS
T ss_pred CccccccCCCccEEEEEeeeEEeCCEEEECCCCEEEEEECCC
Confidence 343 333344567776653 68899998887764
No 51
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=24.86 E-value=39 Score=29.32 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=49.3
Q ss_pred CCceecCCCCCCCCCCceEeecCceEEEeecccCCCCCCccccccCCCCCCCccccccceeeehhHHHHHHHHHHhhhHh
Q psy6642 166 SGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSDIRTPDFSKYRRDRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSV 245 (292)
Q Consensus 166 ~G~v~~gPa~~~L~~~p~~~~~d~i~V~I~ahtD~~~P~F~~yr~~~~~~~~~~~~~rr~f~~~~~~~~~~~g~~~~~~~ 245 (292)
.|.+...|...|-..|=+-+++|--.- -.|.++..=+-+. ++.+.|. .+.++|+|+
T Consensus 89 ~GiVaE~p~~~N~~RyLVFFDDG~~~Y--v~~~~V~~Vc~~s--~~vW~di--~~~~~r~FI------------------ 144 (213)
T 3dlm_A 89 AGIVAETPNVKNKLRFLIFFDDGYASY--VTQSELYPICRPL--KKTWEDI--EDISCRDFI------------------ 144 (213)
T ss_dssp EEEEEECCCTTTTSCEEEEETTSCEEE--ECGGGEEEBSSCC--SSGGGGC--SCHHHHHHH------------------
T ss_pred eeEEEECCccCCCceEEEEEeCCCcce--ecCceEEEEEEcc--cchhhhc--CcchhHHHH------------------
Confidence 789988898888777878887764321 1334433111100 1112221 123478777
Q ss_pred hhhhhhccCCCHHhhhccceEEecCCCCCCceEEEEECCee
Q psy6642 246 VNQFISSMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKP 286 (292)
Q Consensus 246 ~~~~v~~~~p~~~~~a~~~~evdls~i~~G~~~~~~WrgkP 286 (292)
.+.+..=| |--+=.+++||.+.++|+|+=
T Consensus 145 -----------k~YL~~yP-~rpmv~~~~GQ~i~~E~~g~w 173 (213)
T 3dlm_A 145 -----------EEYVTAYP-NRPMVLLKSGQLIKTEWEGTW 173 (213)
T ss_dssp -----------HHHHHHTT-CCCCCCCCTTCEEEEEETTEE
T ss_pred -----------HHHHHhCC-CCceEEcCCCCEEEEEecCcE
Confidence 22322212 445667999999999999993
No 52
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...
Probab=22.02 E-value=34 Score=29.39 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=24.6
Q ss_pred hhhhhhhccCCCHHhhhc-cceEEecCCCCCCceEEE
Q psy6642 245 VVNQFISSMSASADVLAM-ATIEVDLNLIPEGQSVTF 280 (292)
Q Consensus 245 ~~~~~v~~~~p~~~~~a~-~~~evdls~i~~G~~~~~ 280 (292)
.+......+.=....... ..+|||+|+|..|+++.+
T Consensus 116 ~l~~~~~~v~V~~~p~~IPe~I~VDvs~L~iGdsi~v 152 (206)
T 1feu_A 116 VLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHA 152 (206)
T ss_dssp EEEECCSEEEEEECGGGCCSCEEEECTTCCTTEEEEG
T ss_pred EEEEEEeEEEEEEcHHHCCccEEEEcccCCCCCEEEE
Confidence 444455555444443333 689999999999999875
Done!