RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6642
(292 letters)
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1
f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E*
1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E*
1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E*
2bcc_E* ...
Length = 196
Score = 245 bits (627), Expect = 2e-82
Identities = 119/194 (61%), Positives = 151/194 (77%), Gaps = 4/194 (2%)
Query: 3 AHSDIRTPDFSKYRRDRNPD----KGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFIS 58
+H+DI+ PDFS YRR D + RK F+Y++ ++V AK+VV+QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 59 SMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDP 118
SMSASADVLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHRT+KEID E +SQLRDP
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDP 120
Query: 119 QADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNM 178
Q D +RVK P W+++IG+CTHLGCVPIANAGD+GGYYCPCHGSHYDASGRIRKGPAP N+
Sbjct: 121 QHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNL 180
Query: 179 EVPPYQFGDEGILI 192
EVP Y+F + ++I
Sbjct: 181 EVPSYEFTSDDMVI 194
Score = 122 bits (308), Expect = 2e-34
Identities = 53/101 (52%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Query: 196 AHSDIRTPDFSKYRRDRNPD----KGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFIS 251
+H+DI+ PDFS YRR D + RK F+Y++ ++V AK+VV+QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 252 SMSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
SMSASADVLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHR
Sbjct: 61 SMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHR 101
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E*
1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Length = 185
Score = 232 bits (592), Expect = 4e-77
Identities = 99/188 (52%), Positives = 136/188 (72%), Gaps = 5/188 (2%)
Query: 5 SDIRTPDFSKYRRDRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASA 64
S RTP+F ++ N + + +++ Y + G ++ AKS V FISSM+A+A
Sbjct: 2 STYRTPNFDDVLKENN-----DADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATA 56
Query: 65 DVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDR 124
DVLAMA +EV+L IP G++V KW+GKP+FIRHRT EI + ++S L+DPQ D+DR
Sbjct: 57 DVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADR 116
Query: 125 VKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQ 184
VKDP WL+++GICTHLGCVPI AGD+GG++CPCHGSHYD SGRIRKGPAP N+E+P Y+
Sbjct: 117 VKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYE 176
Query: 185 FGDEGILI 192
F + +++
Sbjct: 177 FDGDKVIV 184
Score = 103 bits (257), Expect = 4e-27
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 198 SDIRTPDFSKYRRDRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASA 257
S RTP+F ++ N + + +++ Y + G ++ AKS V FISSM+A+A
Sbjct: 2 STYRTPNFDDVLKENN-----DADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATA 56
Query: 258 DVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
DVLAMA +EV+L IP G++V KW+GKP+FIRHR
Sbjct: 57 DVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHR 91
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8
TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM
helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter
sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E*
2yiu_C*
Length = 187
Score = 201 bits (513), Expect = 3e-65
Identities = 70/186 (37%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 22 DKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNLIPE 81
+ R+ F Y G+ V + V I+ M+ SADV A+A+I VD++ +
Sbjct: 3 NAEDHAGTRRDFLYYATAGAGAVA---TGAAVWPLINQMNPSADVQALASIFVDVSSVEP 59
Query: 82 GQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSD--------------RVKD 127
G +T K+ GKP+FIR RT+ +I+ ++ + QL D A + +
Sbjct: 60 GVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEA 119
Query: 128 PSWLVIIGICTHLGCVPIANAGDW-GGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFG 186
WLV+ G+CTHLGC PI GG++CPCHGSHYD++GRIRKGPAP N+ +P +F
Sbjct: 120 GEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPENLPIPLAKFI 179
Query: 187 DEGILI 192
DE +
Sbjct: 180 DETTIQ 185
Score = 82.5 bits (203), Expect = 3e-19
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 215 DKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDLNLIPE 274
+ R+ F Y G+ V + V I+ M+ SADV A+A+I VD++ +
Sbjct: 3 NAEDHAGTRRDFLYYATAGAGAVA---TGAAVWPLINQMNPSADVQALASIFVDVSSVEP 59
Query: 275 GQSVTFKWRGKPLFIRHR 292
G +T K+ GKP+FIR R
Sbjct: 60 GVQLTVKFLGKPIFIRRR 77
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex,
histidine ligands, rieske iron-sulfur cluster, electron
transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Length = 129
Score = 193 bits (491), Expect = 1e-62
Identities = 89/127 (70%), Positives = 109/127 (85%)
Query: 66 VLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRV 125
VLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHRT+KEID E +SQLRDPQ D +RV
Sbjct: 1 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERV 60
Query: 126 KDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQF 185
K P W+++IG+CTHLGCVPIANAGD+GGYYCPCHGSHYDASGRIRKGPAP N+EVP Y+F
Sbjct: 61 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEF 120
Query: 186 GDEGILI 192
+ ++I
Sbjct: 121 TSDDMVI 127
Score = 64.6 bits (157), Expect = 3e-13
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 259 VLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
VLAM+ IE+ L+ IPEG+++ FKWRGKPLF+RHR
Sbjct: 1 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHR 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S]
ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter
sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Length = 141
Score = 189 bits (482), Expect = 3e-61
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 15/139 (10%)
Query: 69 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRV--- 125
+A+I VD++ + G +T K+ GKP+FIR RT+ +I+ ++ + QL D A + +
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 126 -----------KDPSWLVIIGICTHLGCVPIANAGDW-GGYYCPCHGSHYDASGRIRKGP 173
+ WLV+ G+CTHLGCVPI GG++CPCHGSH+D++GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGP 120
Query: 174 APTNMEVPPYQFGDEGILI 192
AP N+ +P +F DE +
Sbjct: 121 APENLPIPLAKFIDETTIQ 139
Score = 62.2 bits (151), Expect = 2e-12
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 262 MATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+A+I VD++ + G +T K+ GKP+FIR R
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRR 31
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske,
thermosynechococcus elongatu photosynthesis, electron
transport; 2.00A {Thermosynechococcus elongatus}
Length = 133
Score = 163 bits (415), Expect = 3e-51
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 81 EGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADS-DRVKDPSWLVIIGICTH 139
EG++V G + + K + +++ DP + + +CTH
Sbjct: 4 EGRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTH 63
Query: 140 LGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILI 192
LGCV N + + CPCHGS YD++G++ +GPAP ++ + ++ L+
Sbjct: 64 LGCVVPWNVSE-NKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLV 115
Score = 40.9 bits (96), Expect = 7e-05
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 274 EGQSVTFKWRGKPLFIRHR 292
EG++V G + +
Sbjct: 4 EGRAVAKDALGNDIKVSEY 22
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein
complex, electron transfer complex; HET: HEM TDS PL9 OPC
CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1
f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Length = 179
Score = 152 bits (386), Expect = 4e-46
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 20/183 (10%)
Query: 22 DKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASADVLAMATIEVDL--NLI 79
+ +R+ + G + V + +V FI S + T D N +
Sbjct: 8 MDVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPP---SGGAVGGGTTAKDKLGNNV 64
Query: 80 PEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICTH 139
+ + G + ++ + ++ R I +CTH
Sbjct: 65 KVSKFLESHNAGDRVLVQGLKGDPTY---------IVVESKEAIR-----DYGINAVCTH 110
Query: 140 LGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSD 199
LGCV NA + + CPCHGS YD +GR+ +GPAP ++ + D+ I++ +D
Sbjct: 111 LGCVVPWNAAE-NKFKCPCHGSQYDETGRVIRGPAPLSLALCHATVQDDNIVLTPWTETD 169
Query: 200 IRT 202
RT
Sbjct: 170 FRT 172
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster,
electron transport; 1.31A {Thermus thermophilus} SCOP:
b.33.1.1 PDB: 3fou_A
Length = 165
Score = 136 bits (343), Expect = 5e-40
Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 9/129 (6%)
Query: 70 ATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPS 129
+ L + G + P + +NT + DP+ + V +
Sbjct: 21 EPKPIRLEELKPGDPFVLAYPMDP----KTKVVKSGEAKNTLLVARFDPEELAPEVAQHA 76
Query: 130 ---WLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDA--SGRIRKGPAPTNMEVPPYQ 184
+ +CTHLGC+ D CPCHG YD ++ GP P + P +
Sbjct: 77 AEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVR 136
Query: 185 FGDEGILIR 193
D ++
Sbjct: 137 VEDGVLVAA 145
Score = 35.0 bits (80), Expect = 0.012
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 263 ATIEVDLNLIPEGQSVTFKWRGKP 286
+ L + G + P
Sbjct: 21 EPKPIRLEELKPGDPFVLAYPMDP 44
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A
{Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Length = 139
Score = 113 bits (285), Expect = 1e-31
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 95 FIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLV-----------IIGICTHLGCV 143
+ ++ + D DP++LV I +CTHLGCV
Sbjct: 14 IAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCV 73
Query: 144 PIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSDIRTP 203
NA + + CPCHGS Y+ GR+ +GPAP ++ + D ++ +D RT
Sbjct: 74 VPFNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTG 132
Query: 204 D 204
+
Sbjct: 133 E 133
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory
chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius}
SCOP: b.33.1.1
Length = 204
Score = 77.5 bits (190), Expect = 3e-17
Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 31/130 (23%)
Query: 89 WRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVK------------DPSWLVIIGI 136
+P F+ I+++ +P + + +
Sbjct: 39 LTDEPCFLVDLQ-----ALTGQQITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDV 93
Query: 137 CTHLGCVPIANAGDW-----------GGYYCPCHGSHYDA--SGRIRKGPAPTNMEVPPY 183
C HLGC A +CPCHGS Y G + GPAP + +
Sbjct: 94 CVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVIL 153
Query: 184 QF-GDEGILI 192
+ G +
Sbjct: 154 DYDSSTGDIY 163
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.33.1.1 PDB: 1g8j_B*
Length = 133
Score = 60.3 bits (146), Expect = 1e-11
Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 22/122 (18%)
Query: 75 DLNLIPEGQSVTFKWR--GKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLV 132
+ + V+F + P D +
Sbjct: 13 VAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGG-----------------VGPDDDIVA 55
Query: 133 IIGICTHLGCVPIANAGDWGGYYCPCHGSHYDA--SGRIRKGPAPTNMEVPPYQFGDEGI 190
+CTH+GC ++ + CPCH + +DA +G++ G A ++ ++
Sbjct: 56 YSVLCTHMGCPTSYDSSS-KTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASD 114
Query: 191 LI 192
+
Sbjct: 115 AL 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.027
Identities = 44/299 (14%), Positives = 79/299 (26%), Gaps = 118/299 (39%)
Query: 53 VNQFISSMSASADVLAMATIEVDLNLIPEGQ----SVTFKWRGKPLFIRHRTQKEIDTEQ 108
+ +++ + S + D + +I + LI Q VT K G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF---------------- 258
Query: 109 NTNISQLRDP-QADSDRVKDPSWLVIIGICTHLGCVPIANAGDWGGYY------------ 155
+LR + + + ++ + IA W ++
Sbjct: 259 --TPGELRSYLKGATGHSQG----LVTAVA-------IAETDSWESFFVSVRKAITVLFF 305
Query: 156 --CPCHGSHYDASGRIRKGPAPTNMEVPPYQFGD-----EGILIRMLAHSDIRTPDFSKY 208
C+ + P N +PP D EG+ ML+ S++ Y
Sbjct: 306 IGVRCYEA------------YP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 209 RRDRNPDKGQEETQ--------RKAFTYMIAGG-SSVVGM------VCAKS--------- 244
N Q K ++G S+ G+ A S
Sbjct: 353 VNKTN-SHLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 245 ------VVNQF--ISS------MSASADVLAMATIEVDLNLIPEGQSVTFKWRGKPLFI 289
N+F ++S + A I DL + K + I
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVP-----ASDLINKDL------VKNNVSFNAKDIQI 457
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske
ferredoxin, 2Fe-2S, electron transfer, oxidoreductase;
2.00A {Nocardioides aromaticivorans}
Length = 121
Score = 32.7 bits (75), Expect = 0.045
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 135 GICTHLGCVPIAN---AGDWGGYYCPCHGSHYD-ASGRIRKGPAPTNMEVPPYQFGDEGI 190
+C+H + + CP H +D +G P + I
Sbjct: 49 NLCSHAE-AYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVVDGTEI 107
Query: 191 LIR 193
L+
Sbjct: 108 LVA 110
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster,
beta sandwich, oxido; 1.60A {Burkholderia xenovorans}
SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Length = 112
Score = 31.5 bits (72), Expect = 0.099
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 135 GICTHLGCVPIANAGDWGGYY--CPCHGSHYD-ASGRIRKGPAPTNMEV 180
CTH +++ G G C H + +G+++ P +++
Sbjct: 44 DRCTHGD-WSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKI 91
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske,
iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons
catabolism, electron transport; 1.20A {Pseudomonas
putida}
Length = 106
Score = 31.4 bits (72), Expect = 0.10
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 135 GICTHLGCVPIANAGDWGGYY--CPCHGSHYD-ASGRIRKGPAPTNMEVPPYQFGDEGIL 191
CTH +++ G G C H + +G+++ PA ++V P + + +
Sbjct: 40 DTCTHGD-WALSD-GYLDGDIVECTLHFGKFCVRTGKVKALPACKPIKVFPIKVEGDEVH 97
Query: 192 IRM 194
+ +
Sbjct: 98 VDL 100
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics,
CESG, protein structure initiative, PSI, ferredoxin,
FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina}
SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Length = 111
Score = 29.9 bits (68), Expect = 0.29
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 124 RVKDPSWLVIIGICTHLGCVPIANAGDWGGY--YCPCHGSHYD-ASGRIRKGPAPTNMEV 180
++ +C H + ++ G + G C H ++ +G G P + +
Sbjct: 31 NSEEHGVKAYQAMCPHQE-ILLSE-GSYEGGVITCRAHLWTFNDGTG---HGINPDDAAL 85
Query: 181 PPY 183
Y
Sbjct: 86 AEY 88
>2de6_D Ferredoxin component of carbazole; electron transfer complex,
rieske non-heme iron oxygenase system, terminal
oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D
1vck_A 2de7_D*
Length = 115
Score = 29.6 bits (67), Expect = 0.45
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 135 GICTHLGCVPIANAGDWGGYY--CPCHGSHYD-ASGRIRKGPAPTNMEV 180
CTH ++ G G CP HG ++ +G P + V
Sbjct: 44 DTCTHGI-ASLSE-GTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGV 90
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin,
[2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus
musculus}
Length = 157
Score = 30.3 bits (68), Expect = 0.46
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 136 ICTHLGCVPIA-----NAGDWGGYYCPCHGSHYD-ASGRIRKGPAPTNMEVPPYQFGDEG 189
C H G P+ + CP H A+G ++ +G
Sbjct: 56 RCYHSG-GPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKG 114
Query: 190 ILIR 193
+ R
Sbjct: 115 VKQR 118
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin,
oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Length = 108
Score = 29.2 bits (66), Expect = 0.62
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 135 GICTHLGCVPIANAGDWGGY-YCPCHGSHYD-ASGRIRKGPA 174
+CTH + + G CP HG +D A+G + P
Sbjct: 43 NLCTHGN-AMLTDGYQDGTIIECPFHGGSFDIATGAAKAFPC 83
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske
ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism,
electron transport, iron; 1.85A {Pseudomonas putida}
Length = 103
Score = 28.7 bits (65), Expect = 0.80
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 135 GICTHLGCVPIANAGDWGGY-YCPCHGSHYD-ASGRIRKGPAPTNMEVPPYQFGDEGILI 192
+CTH +++ G CP H +D +G+ P N++ P + + ++I
Sbjct: 42 NLCTHGS-ARMSDGYLEGREIECPLHQGRFDVCTGKALCAPVTQNIKTYPVKIENLRVMI 100
Query: 193 RM 194
+
Sbjct: 101 DL 102
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 29.9 bits (68), Expect = 1.0
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 22/84 (26%)
Query: 140 LGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPA-PTNM-------------EVPPYQF 185
LG P AN GD + P HG+ +D +G K PT ++
Sbjct: 237 LGIAPSANIGDKKALFEPVHGAAFDIAG---KNIGNPTAFLLSVSMMYERMYELSNDDRY 293
Query: 186 GDEGILIR-----MLAHSDIRTPD 204
+ + TPD
Sbjct: 294 IKASRALENAIYLVYKERKALTPD 317
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain,
rieske iron-sulfur protein, 3-layer sandwich, structural
genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Length = 113
Score = 27.8 bits (62), Expect = 1.6
Identities = 5/54 (9%), Positives = 11/54 (20%), Gaps = 6/54 (11%)
Query: 127 DPSWLVIIGICTHLGCVPIANA--GDWGGY---YCPCHGSHYD-ASGRIRKGPA 174
I I ++ + G P + + G +
Sbjct: 39 SDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQ 92
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase
protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A
{Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Length = 119
Score = 28.1 bits (63), Expect = 1.6
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 124 RVKDPSWLVIIGICTHLGCVPIANA--GDWGGY---YCPCHGSHYD-ASGRIRKGPA 174
+ D + ++ GD G P + H+ SG+ + A
Sbjct: 34 YIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEA 90
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske
iron-sulfur protein, 3-layer beta- sandwich; NMR
{Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Length = 130
Score = 27.1 bits (60), Expect = 3.7
Identities = 7/54 (12%), Positives = 12/54 (22%), Gaps = 6/54 (11%)
Query: 127 DPSWLVIIGICTHLGCVPIANA--GDWGGYY---CPCHGSHYD-ASGRIRKGPA 174
D I I ++ + P H+ G + A
Sbjct: 36 DEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDGFCLEDGA 89
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 27.7 bits (61), Expect = 4.7
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 136 ICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRML 195
I V H + DA + +P QF + + +
Sbjct: 331 IAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLL--------PHIPADQFPAQALACELY 382
Query: 196 AHSDIRTPDFSKYRRDRNPDKGQE 219
+ IR + + R+P G++
Sbjct: 383 KVAGIRAVEIGSFLLGRDPKTGKQ 406
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 27.6 bits (62), Expect = 5.1
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 140 LGCVPIANAGDWGGYYCPCHGS 161
LG VP AN GD P HGS
Sbjct: 273 LGLVPSANVGDNFVMSEPVHGS 294
>2e5o_A Activating signal cointegrator 1; TRIP4_C domain, ASC- 1, thyroid
receptor-interacting protein 4, TRIP-4, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 154
Score = 26.8 bits (59), Expect = 6.6
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 81 EGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWL--VIIGICT 138
EG+S RG L+I T K+ ++ + + D + ++G
Sbjct: 28 EGRSWYTPHRG-RLWI-AATAKKPSPQEVSELQATYRLLRGKDVEFPNDYPSGCLLGCVD 85
Query: 139 HLGCVPIANAGDWGGYYCPCHGSHY 163
+ C+ + S +
Sbjct: 86 LIDCLSQKQFKEQFPDISQESDSPF 110
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1
Length = 119
Score = 26.4 bits (58), Expect = 6.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 67 LAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTN 111
+ M T E ++ SVT RG+P++I+ KE+ T+ + N
Sbjct: 72 IEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPN 116
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 27.1 bits (61), Expect = 7.2
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 193 RMLAHSDIRTPDFSKYRRDRNPDKGQEETQRK-AFTYMI---AGGSSVVGMVCAKS 244
+ + + TP F R + + K + + GSS V ++ K+
Sbjct: 113 LVWQQTGVPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSS-VAVLKVKT 167
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD;
nucleoside-phosphorylases; 2.05A {Sulfolobus
solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A
1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Length = 345
Score = 27.1 bits (61), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 54 NQFISSMSASADVLAMATIEVDLNLIPE 81
N+ +S S SADVL + + PE
Sbjct: 109 NRAVSGKSGSADVLEALGYNIIVP--PE 134
Score = 27.1 bits (61), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 247 NQFISSMSASADVLAMATIEVDLNLIPE 274
N+ +S S SADVL + + PE
Sbjct: 109 NRAVSGKSGSADVLEALGYNIIVP--PE 134
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics,
RRM domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Length = 104
Score = 25.9 bits (57), Expect = 8.5
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 83 QSVTFKWRGKPLFIRHRTQKEIDTEQNTNIS 113
V G+ F + T K I N+ S
Sbjct: 72 ADVPVYIAGQQAFFNYSTSKRITRPGNSGPS 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding
protein; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 105
Score = 25.6 bits (56), Expect = 9.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 90 RGKPLFIRHRTQKEIDTEQNTN 111
RG+P++I+ KE+ T+ + N
Sbjct: 80 RGQPIYIQFSNHKELKTDSSPN 101
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics,
NPPSFA, national project O structural and functional
analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1
c.27.1.1 PDB: 1v8g_A
Length = 329
Score = 26.7 bits (60), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 54 NQFISSMSASADVLAMATIEVDLNLIPE 81
N+ SS + SAD+L VDL PE
Sbjct: 109 NRAASSRAGSADLLEAL--GVDLEAPPE 134
Score = 26.7 bits (60), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 247 NQFISSMSASADVLAMATIEVDLNLIPE 274
N+ SS + SAD+L VDL PE
Sbjct: 109 NRAASSRAGSADLLEAL--GVDLEAPPE 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.408
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,526,032
Number of extensions: 265823
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 721
Number of HSP's successfully gapped: 54
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)