RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6642
(292 letters)
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome
bc1-complex, water-soluble domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 127
Score = 165 bits (419), Expect = 2e-52
Identities = 87/125 (69%), Positives = 107/125 (85%)
Query: 68 AMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKD 127
AM+ IE+ L+ IPEG+++ FKWRGKPLF+RHRT+KEID E +SQLRDPQ D +RVK
Sbjct: 1 AMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKK 60
Query: 128 PSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGD 187
P W+++IG+CTHLGCVPIANAGD+GGYYCPCHGSHYDASGRIRKGPAP N+EVP Y+F
Sbjct: 61 PEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTS 120
Query: 188 EGILI 192
+ ++I
Sbjct: 121 DDMVI 125
Score = 55.8 bits (134), Expect = 1e-10
Identities = 21/32 (65%), Positives = 28/32 (87%)
Query: 261 AMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
AM+ IE+ L+ IPEG+++ FKWRGKPLF+RHR
Sbjct: 1 AMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHR 32
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial
cytochrome bc1-complex, water-soluble domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 129
Score = 157 bits (399), Expect = 2e-49
Identities = 80/128 (62%), Positives = 104/128 (81%)
Query: 65 DVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDR 124
DVLAMA +EV+L IP G++V KW+GKP+FIRHRT EI + ++S L+DPQ D+DR
Sbjct: 1 DVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADR 60
Query: 125 VKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQ 184
VKDP WL+++GICTHLGCVPI AGD+GG++CPCHGSHYD SGRIRKGPAP N+E+P Y+
Sbjct: 61 VKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYE 120
Query: 185 FGDEGILI 192
F + +++
Sbjct: 121 FDGDKVIV 128
Score = 60.1 bits (145), Expect = 4e-12
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 258 DVLAMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
DVLAMA +EV+L IP G++V KW+GKP+FIRHR
Sbjct: 1 DVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHR 35
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase), transmembrane region {Cow (Bos taurus)
[TaxId: 9913]}
Length = 69
Score = 91.4 bits (227), Expect = 2e-24
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 3 AHSDIRTPDFSKYRRD--RNPDKGQEET--QRKAFTYMIAGGSSVVGMVCAKSVVNQFIS 58
+H+DI+ PDFS YRR + K +E+ RK F+Y++ ++V AK+VV+QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 59 SMSASADVL 67
SMSASADVL
Sbjct: 61 SMSASADVL 69
Score = 91.4 bits (227), Expect = 2e-24
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 196 AHSDIRTPDFSKYRRD--RNPDKGQEET--QRKAFTYMIAGGSSVVGMVCAKSVVNQFIS 251
+H+DI+ PDFS YRR + K +E+ RK F+Y++ ++V AK+VV+QF+S
Sbjct: 1 SHTDIKVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVS 60
Query: 252 SMSASADVL 260
SMSASADVL
Sbjct: 61 SMSASADVL 69
>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus
[TaxId: 274]}
Length = 156
Score = 86.3 bits (213), Expect = 2e-21
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 7/130 (5%)
Query: 68 AMATIEVDLNLIPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKD 127
+ L + G + P ++ + +T + + +
Sbjct: 19 GGEPKPIRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVAR---FDPEELAPEVAQH 75
Query: 128 PS--WLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDAS--GRIRKGPAPTNMEVPPY 183
+ + +CTHLGC+ D CPCHG YD ++ GP P + P
Sbjct: 76 AAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPV 135
Query: 184 QFGDEGILIR 193
+ D ++
Sbjct: 136 RVEDGVLVAA 145
Score = 40.4 bits (94), Expect = 6e-05
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 261 AMATIEVDLNLIPEGQSVTFKWRGKPLFIRHR 292
+ L + G + P +
Sbjct: 19 GGEPKPIRLEELKPGDPFVLAYPMDPKTKVVK 50
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase), transmembrane region {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 76.0 bits (187), Expect = 1e-18
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 5 SDIRTPDFSKYRRDRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASA 64
S RTP+F ++ N + +++ Y + G ++ AKS V FISSM+A+A
Sbjct: 2 STYRTPNFDDVLKENNDA-----DKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATA 56
Score = 76.0 bits (187), Expect = 1e-18
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 198 SDIRTPDFSKYRRDRNPDKGQEETQRKAFTYMIAGGSSVVGMVCAKSVVNQFISSMSASA 257
S RTP+F ++ N + +++ Y + G ++ AKS V FISSM+A+A
Sbjct: 2 STYRTPNFDDVLKENNDA-----DKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATA 56
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf
complex {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 127
Score = 71.2 bits (174), Expect = 3e-16
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 136 ICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRML 195
+CTHLGCV NA + + CPCHGS Y+ GR+ +GPAP ++ + D ++
Sbjct: 54 VCTHLGCVVPFNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPW 112
Query: 196 AHSDIRTPD 204
+D RT +
Sbjct: 113 TETDFRTGE 121
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 202
Score = 71.3 bits (174), Expect = 2e-15
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 33/141 (23%)
Query: 74 VDLNLIPEGQSVTFKWRGKPLFIRHRTQK-------EIDTEQNTNISQLRDPQADSDRVK 126
+ I + Q K G ++ ++ I+++ +P
Sbjct: 11 YKVANIQQVQ-QQIKSSGCAVYFFAYPLTDEPCFLVDLQALTGQQITEIPNPYYGKYAGP 69
Query: 127 DPSWLVIIG------------ICTHLGCVPIAN-----------AGDWGGYYCPCHGSHY 163
I G +C HLGC A +CPCHGS Y
Sbjct: 70 LGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIY 129
Query: 164 DAS--GRIRKGPAPTNMEVPP 182
G + GPAP + +
Sbjct: 130 ALKDGGVVVSGPAPRPLPIVI 150
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f
complex, soluble domain {Mastigocladus laminosus [TaxId:
83541]}
Length = 134
Score = 66.7 bits (162), Expect = 2e-14
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 18/110 (16%)
Query: 112 ISQLRDPQADSDRV------KDPSWLVIIG-----------ICTHLGCVPIANAGDWGGY 154
+S+ + DRV DP+++V+ +CTHLGCV NA + +
Sbjct: 21 VSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAE-NKF 79
Query: 155 YCPCHGSHYDASGRIRKGPAPTNMEVPPYQFGDEGILIRMLAHSDIRTPD 204
CPCHGS YD +G++ +GPAP ++ + D+ I++ +D RT +
Sbjct: 80 KCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGE 129
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes
faecalis [TaxId: 511]}
Length = 133
Score = 50.8 bits (121), Expect = 8e-09
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 126 KDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDA--SGRIRKGPAPTNMEVPPY 183
D + +CTH+GC P + + CPCH + +DA +G++ G A ++
Sbjct: 49 PDDDIVAYSVLCTHMGC-PTSYDSSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLL 107
Query: 184 QFGDEGILIR 193
++ +
Sbjct: 108 RYDAASDALT 117
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C,
TmoC {Pseudomonas mendocina [TaxId: 300]}
Length = 109
Score = 35.0 bits (80), Expect = 0.002
Identities = 8/71 (11%), Positives = 20/71 (28%)
Query: 124 RVKDPSWLVIIGICTHLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPY 183
++ +C H + + + G C H ++ P + P
Sbjct: 31 NSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAEYPV 90
Query: 184 QFGDEGILIRM 194
+ + I +
Sbjct: 91 EVKGDDIYVST 101
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with
biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}
Length = 109
Score = 31.6 bits (71), Expect = 0.035
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 29/118 (24%)
Query: 79 IPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICT 138
+PEG+++ + G + I + D CT
Sbjct: 12 VPEGEALKVESGGTSVAIFNV---------------------------DGELFATQDRCT 44
Query: 139 HLGCVPIANA-GDWGGYYCPCHGSHYD-ASGRIRKGPAPTNMEVPPYQFGDEGILIRM 194
H + C H + +G+++ P +++ P + D +L+
Sbjct: 45 HGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDNDVLVDF 102
>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline
8-monooxygenase, oxygenase component OxoO {Pseudomonas
putida [TaxId: 303]}
Length = 148
Score = 30.1 bits (67), Expect = 0.17
Identities = 13/110 (11%), Positives = 21/110 (19%), Gaps = 29/110 (26%)
Query: 79 IPEGQSVTFKWRGKPLFIRHRTQKEIDTEQNTNISQLRDPQADSDRVKDPSWLVIIGICT 138
+ E Q + G P+ +R + + C
Sbjct: 38 LEEDQVQGIQICGVPIVLRR---------------------------VNGKVFALKDQCL 70
Query: 139 HLGC--VPIANAGDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPPYQFG 186
H G C HG +D + G
Sbjct: 71 HRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTG 120
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 25.2 bits (55), Expect = 1.6
Identities = 7/35 (20%), Positives = 9/35 (25%), Gaps = 6/35 (17%)
Query: 135 GICTHLGCVPIANAGDWGGYYCPCH-GSHYDASGR 168
+C C G Y C C G +
Sbjct: 10 LLCRGGVCHNT-----EGSYRCECPPGHQLSPNIS 39
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 27.8 bits (61), Expect = 1.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 141 GCVPIANAGDWGGYYCPCHGSHYDASGR 168
G P AN GD + HG+ +G+
Sbjct: 321 GIAPGANIGDECALFEATHGTAPKYAGQ 348
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 24.9 bits (54), Expect = 2.3
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 135 GICTHLGCVPIANAGDW-GGYYCPCH 159
G C +L C+P + C C
Sbjct: 12 GGCQYL-CLPAPQINPHSPKFTCACP 36
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha
subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId:
92694]}
Length = 162
Score = 26.0 bits (56), Expect = 4.6
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 130 WLVIIGICTHLGCVPIANA-GDWGGYYCPCHGSHYDASGRIRKGPAPTNMEVPP 182
+ C H G G+ + CP HG Y +G + PA +
Sbjct: 81 IRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQ 134
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain
3 {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 348
Score = 26.2 bits (56), Expect = 4.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 71 TIEVDLNLIPEGQSVTFKWRGKPLFIR 97
TI V +G+S F+ G P+F +
Sbjct: 2 TIRVVNEKDKDGESFYFEVNGIPMFAK 28
Score = 26.2 bits (56), Expect = 4.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 264 TIEVDLNLIPEGQSVTFKWRGKPLFIR 290
TI V +G+S F+ G P+F +
Sbjct: 2 TIRVVNEKDKDGESFYFEVNGIPMFAK 28
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
{Bacillus coagulans [TaxId: 1398]}
Length = 356
Score = 25.5 bits (55), Expect = 9.8
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 139 HLGCVPIANAGDWGGYYCPCHGSHYDASGRIRKGP 173
+ D G Y P HGS D +G+ + P
Sbjct: 259 LGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANP 293
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.408
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,097,866
Number of extensions: 50348
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 26
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)