RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6643
(324 letters)
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 245 bits (628), Expect = 1e-80
Identities = 92/213 (43%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Query: 1 MIVVGLARREENIQKMAKELEQ--YPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVM 58
+ VVG AR NI+++A E + YPG L + DL NE++IL F I+ GV +
Sbjct: 57 LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH-SGVDIC 115
Query: 59 INNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISG 118
INNAGL L SG T W++++ VNVLAL+ICTREA QSM ++D+G+IININS+SG
Sbjct: 116 INNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSG 175
Query: 119 HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH 178
HRVLP+ Y+A+K+ VT +++ LR+EL ++ I+ T ISPG+ T+ +
Sbjct: 176 HRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDP 235
Query: 179 D------PKTPTLQSEDIADQVVYLLKTPAHVQ 205
+ + L+ ED+A+ V+Y+L TPAH+Q
Sbjct: 236 EKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQ 268
Score = 145 bits (369), Expect = 6e-42
Identities = 50/127 (39%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 200 TPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKK 259
T QSM N+D+G+IININS+SGHRVLP+ Y+A+K+ VT +++ LR+EL +
Sbjct: 150 TREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQ 209
Query: 260 SRIKVTSISPGMTATEIFKAANWPVHD------PKTPTLQSEDIADQVVYLLKTPAHVQI 313
+ I+ T ISPG+ T+ + + + L+ ED+A+ V+Y+L TPAH+QI
Sbjct: 210 THIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQI 269
Query: 314 TELTIVP 320
++ + P
Sbjct: 270 GDIQMRP 276
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 180 bits (458), Expect = 2e-55
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 14/208 (6%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
++ ARR+ I+ +A E+ G A+ +D+ + + Q +T+ G + V++NNA
Sbjct: 31 ILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTW-GRIDVLVNNA 89
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G++ +PL + + ++W + +VN+ + M A +G IINI SI V+
Sbjct: 90 GVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ--RSGQIINIGSIGALSVV 147
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATE----IFKAANWPVH 178
P A+Y A+K V ISD LR+E + I+VT ++PG+ +E I
Sbjct: 148 P--TAAVYCATKFAVRAISDGLRQE----STNIRVTCVNPGVVESELAGTITHEETMAAM 201
Query: 179 DP-KTPTLQSEDIADQVVYLLKTPAHVQ 205
D + LQ DIA V +++ P V
Sbjct: 202 DTYRAIALQPADIARAVRQVIEAPQSVD 229
Score = 108 bits (272), Expect = 5e-28
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 200 TPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKK 259
A + M A +G IINI SI V+P A+Y A+K V ISD LR+E
Sbjct: 120 IGAVLPIMEAQR--SGQIINIGSIGALSVVP--TAAVYCATKFAVRAISDGLRQE----S 171
Query: 260 SRIKVTSISPGMTATE----IFKAANWPVHDP-KTPTLQSEDIADQVVYLLKTPAHVQIT 314
+ I+VT ++PG+ +E I D + LQ DIA V +++ P V T
Sbjct: 172 TNIRVTCVNPGVVESELAGTITHEETMAAMDTYRAIALQPADIARAVRQVIEAPQSVDTT 231
Query: 315 ELTIVP 320
E+TI P
Sbjct: 232 EITIRP 237
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 178 bits (455), Expect = 4e-55
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V ARR E ++ + EL K+H ++D+ + + + E GG+ +++NNA
Sbjct: 34 VAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL-GGLDILVNNA 92
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G++ P+ +T W + + N+L L TR A + + G ++ ++SI+G +
Sbjct: 93 GIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK---GTVVQMSSIAGRVNV 149
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIF--------KAAN 174
A+Y A+K GV S+ LR+E+ + ++V I PG T TE+ K
Sbjct: 150 R--NAAVYQATKFGVNAFSETLRQEVT--ERGVRVVVIEPGTTDTELRGHITHTATKEMY 205
Query: 175 WPVHDPKTPTLQSEDIADQVVYLLKTPAHVQ 205
LQ++DIA+ V Y + P H
Sbjct: 206 EQRISQIRK-LQAQDIAEAVRYAVTAPHHAT 235
Score = 111 bits (279), Expect = 4e-29
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ ++SI+G + A+Y A+K GV S+ LR+E+ + ++V I PG T T
Sbjct: 135 GTVVQMSSIAGRVNVR--NAAVYQATKFGVNAFSETLRQEVT--ERGVRVVVIEPGTTDT 190
Query: 275 EIF--------KAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIVP 320
E+ K LQ++DIA+ V Y + P H + E+ I P
Sbjct: 191 ELRGHITHTATKEMYEQRISQIRK-LQAQDIAEAVRYAVTAPHHATVHEIFIRP 243
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 178 bits (453), Expect = 7e-55
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 13/204 (6%)
Query: 3 VVGLARREENIQKMAKELEQ-YPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ AR + ++K+A EL Q ++ +D+ + + + + + E F G V V++ N
Sbjct: 29 LALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF-GDVDVVVAN 87
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AGL L E++ + EVN+L + + S+ ++ + +S
Sbjct: 88 AGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG--GLALVTTSDVSAR-- 143
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
I Y ++K + + E ++ + PG T + P +
Sbjct: 144 -LIPYGGGYVSTKWAARALVRTFQIE----NPDVRFFELRPGAVDTYFGGSK--PGKPKE 196
Query: 182 TPTLQSEDIADQVVYLLKTPAHVQ 205
L+ ++IA+ V LLK P V+
Sbjct: 197 KGYLKPDEIAEAVRCLLKLPKDVR 220
Score = 110 bits (277), Expect = 7e-29
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
++ + +S I Y ++K + + E ++ + PG T
Sbjct: 132 LALVTTSDVSAR---LIPYGGGYVSTKWAARALVRTFQIE----NPDVRFFELRPGAVDT 184
Query: 275 EIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIVP 320
+ P + L+ ++IA+ V LLK P V++ EL +
Sbjct: 185 YFGGSK--PGKPKEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRS 228
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 176 bits (449), Expect = 1e-53
Identities = 60/215 (27%), Positives = 112/215 (52%), Gaps = 22/215 (10%)
Query: 3 VVGLARREENIQKMAKELEQ--YPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
++ ARR E ++++ K ++Q K+H ++D+ ++I + + + F + +++N
Sbjct: 63 LILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEF-KDIDILVN 121
Query: 61 NAGLV-GNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGH 119
NAG G+ + TE +++++ NV AL T+ A ++G I+N+ SI+G
Sbjct: 122 NAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK--NSGDIVNLGSIAGR 179
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATE----IF----- 170
P ++Y ASK V +D+LR+EL+N +I+V I+PG+ TE +
Sbjct: 180 DAYP--TGSIYCASKFAVGAFTDSLRKELINT--KIRVILIAPGLVETEFSLVRYRGNEE 235
Query: 171 KAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQ 205
+A N V+ TP L ++D+AD +VY +
Sbjct: 236 QAKN--VYKDTTP-LMADDVADLIVYATSRKQNTV 267
Score = 109 bits (275), Expect = 3e-28
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 18/130 (13%)
Query: 200 TPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKK 259
T A + A N +G I+N+ SI+G P ++Y ASK V +D+LR+EL+N
Sbjct: 155 TQAVLPIFQAKN--SGDIVNLGSIAGRDAYP--TGSIYCASKFAVGAFTDSLRKELINT- 209
Query: 260 SRIKVTSISPGMTATE----IF-----KAANWPVHDPKTPTLQSEDIADQVVYLLKTPAH 310
+I+V I+PG+ TE + +A N V+ TP L ++D+AD +VY +
Sbjct: 210 -KIRVILIAPGLVETEFSLVRYRGNEEQAKN--VYKDTTP-LMADDVADLIVYATSRKQN 265
Query: 311 VQITELTIVP 320
I + I P
Sbjct: 266 TVIADTLIFP 275
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 172 bits (439), Expect = 9e-53
Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 16/205 (7%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V L R E++ +A+ + + D+ E +K V +++ A
Sbjct: 31 VYALGRNPEHLAALAEIE-----GVEPIESDIVKEVLEEGGVDKLKNL--DHVDTLVHAA 83
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
+ + + +G +W ++NV+ +R+ ++ A S G +I INS +G+
Sbjct: 84 AVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS---GCVIYINSGAGNGPH 140
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
P G+ +YAASKH + ++DA R+E + I+V+++SPG T T + +
Sbjct: 141 P--GNTIYAASKHALRGLADAFRKEEA--NNGIRVSTVSPGPTNTPMLQGLMDSQGTNFR 196
Query: 183 PT--LQSEDIADQVVYLLKTPAHVQ 205
P ++ ++IA+ + +++ Q
Sbjct: 197 PEIYIEPKEIANAIRFVIDAGETTQ 221
Score = 118 bits (299), Expect = 4e-32
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
+G +I INS +G+ P G+ +YAASKH + ++DA R+E + I+V+++SPG T
Sbjct: 125 SGCVIYINSGAGNGPHP--GNTIYAASKHALRGLADAFRKEEA--NNGIRVSTVSPGPTN 180
Query: 274 TEIFKAANWPVHDPKTPT--LQSEDIADQVVYLLKTPAHVQITELTIVP 320
T + + P ++ ++IA+ + +++ QIT + + P
Sbjct: 181 TPMLQGLMDSQGTNFRPEIYIEPKEIANAIRFVIDAGETTQITNVDVRP 229
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 172 bits (439), Expect = 1e-52
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 24/214 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ RR+E +Q++ EL L+ ++D+RN I + + + + +++NNA
Sbjct: 27 VIATGRRQERLQELKDELG---DNLYIAQLDVRNRAAIEEMLASLPAEW-CNIDILVNNA 82
Query: 63 GLV-GNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
GL G P E W + + N L TR M ++G+IINI S +G
Sbjct: 83 GLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER--NHGHIINIGSTAGSWP 140
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIF----------K 171
G +Y A+K V S LR +L ++VT I PG+ F K
Sbjct: 141 YA--GGNVYGATKAFVRQFSLNLRTDLHGT--AVRVTDIEPGLVGGTEFSNVRFKGDDGK 196
Query: 172 AANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQ 205
A + L ED+++ V ++ PAHV
Sbjct: 197 AEK--TYQNTVA-LTPEDVSEAVWWVSTLPAHVN 227
Score = 109 bits (275), Expect = 2e-28
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 194 VVYLLKTPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRR 253
+VY+ T A + M N +G+IINI S +G G +Y A+K V S LR
Sbjct: 110 LVYM--TRAVLPGMVERN--HGHIINIGSTAGSWPYA--GGNVYGATKAFVRQFSLNLRT 163
Query: 254 ELVNKKSRIKVTSISPGMTATEIF----------KAANWPVHDPKTPTLQSEDIADQVVY 303
+L ++VT I PG+ F KA + L ED+++ V +
Sbjct: 164 DLHGT--AVRVTDIEPGLVGGTEFSNVRFKGDDGKAEK--TYQNTVA-LTPEDVSEAVWW 218
Query: 304 LLKTPAHVQITELTIVP 320
+ PAHV I L ++P
Sbjct: 219 VSTLPAHVNINTLEMMP 235
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 171 bits (436), Expect = 2e-52
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 16/203 (7%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V +AR E+ +Q +A EL D+R E + ++E F G + ++NNA
Sbjct: 32 VGLMARDEKRLQALAAEL----EGALPLPGDVREEGDWARAVAAMEEAF-GELSALVNNA 86
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ P+ E+WR + + N+ + R A ++ G I+N+ S++G
Sbjct: 87 GVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR--GGGTIVNVGSLAGKNPF 144
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
G A Y ASK G+ ++ A +L ++ ++V ++ PG T
Sbjct: 145 K--GGAAYNASKFGLLGLAGAAMLDLR--EANVRVVNVLPGSVDTGFAGN----TPGQAW 196
Query: 183 PTLQSEDIADQVVYLLKTPAHVQ 205
L+ ED+A V++ L+ P H
Sbjct: 197 K-LKPEDVAQAVLFALEMPGHAM 218
Score = 115 bits (290), Expect = 8e-31
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N+ S++G G A Y ASK G+ ++ A +L ++ ++V ++ PG T
Sbjct: 130 GTIVNVGSLAGKNPFK--GGAAYNASKFGLLGLAGAAMLDLR--EANVRVVNVLPGSVDT 185
Query: 275 EIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIVP 320
L+ ED+A V++ L+ P H ++E+ + P
Sbjct: 186 GFAGN----TPGQAWK-LKPEDVAQAVLFALEMPGHAMVSEIELRP 226
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 166 bits (423), Expect = 5e-50
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+V RREE +Q +A EL ++ +D+R+ + + E F + +INNA
Sbjct: 48 LVLTGRREERLQALAGELSA-KTRVLPLTLDVRDRAAMSAAVDNLPEEF-ATLRGLINNA 105
Query: 63 GLV-GNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
GL G P S + + W + + N+ L TR + A+ I+N+ S++G
Sbjct: 106 GLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG-AGASIVNLGSVAGKWP 164
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATE----IFK---AAN 174
P G +Y +K V S LR +L ++VT++ PG+ +E F A
Sbjct: 165 YP--GSHVYGGTKAFVEQFSLNLRCDLQGT--GVRVTNLEPGLCESEFSLVRFGGDQARY 220
Query: 175 WPVHDPKTPTLQSEDIADQVVYLLKTPAHVQ 205
+ P +Q EDIA+ + +++ PAH+
Sbjct: 221 DKTYAGAHP-IQPEDIAETIFWIMNQPAHLN 250
Score = 107 bits (269), Expect = 2e-27
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 200 TPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKK 259
T + + A+ I+N+ S++G P G +Y +K V S LR +L
Sbjct: 137 TRLLLPRLIAHG-AGASIVNLGSVAGKWPYP--GSHVYGGTKAFVEQFSLNLRCDLQGT- 192
Query: 260 SRIKVTSISPGMTATE----IFK---AANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQ 312
++VT++ PG+ +E F A + P +Q EDIA+ + +++ PAH+
Sbjct: 193 -GVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHP-IQPEDIAETIFWIMNQPAHLN 250
Query: 313 ITELTIVP 320
I L I+P
Sbjct: 251 INSLEIMP 258
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 161 bits (410), Expect = 2e-48
Identities = 49/206 (23%), Positives = 99/206 (48%), Gaps = 13/206 (6%)
Query: 3 VVGLARREENIQKMAKELEQ---YPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMI 59
VV +AR ++N++K+ E+ + + + +D+ + + + I + + G V +++
Sbjct: 34 VVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY-GAVDILV 92
Query: 60 NNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGH 119
N A + + L S + +R I E+NV+A + + M NGYI N+ S +
Sbjct: 93 NAAAMFMDGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVASRAAK 149
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD 179
+Y ++K + ++++L REL I+VT++ PG T++ K A P D
Sbjct: 150 YGFA--DGGIYGSTKFALLGLAESLYREL--APLGIRVTTLCPGWVNTDMAKKAGTPFKD 205
Query: 180 PKTPTLQSEDIADQVVYLLKTPAHVQ 205
+ +Q +D+ + + LL +V
Sbjct: 206 EE--MIQPDDLLNTIRCLLNLSENVC 229
Score = 114 bits (288), Expect = 2e-30
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
GYI N+ S + +Y ++K + ++++L REL I+VT++ PG T
Sbjct: 138 GYIFNVASRAAKYGFA--DGGIYGSTKFALLGLAESLYREL--APLGIRVTTLCPGWVNT 193
Query: 275 EIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIVP 320
++ K A P D + +Q +D+ + + LL +V I ++
Sbjct: 194 DMAKKAGTPFKDEEM--IQPDDLLNTIRCLLNLSENVCIKDIVFEM 237
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 160 bits (408), Expect = 3e-48
Identities = 38/202 (18%), Positives = 84/202 (41%), Gaps = 14/202 (6%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V + RR + +Q+ L + DL + +++ F E G ++++ A
Sbjct: 30 VSMMGRRYQRLQQQELLL---GNAVIGIVADLAHHEDVDVAFAAAVEWG-GLPELVLHCA 85
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G P+ E+ R + E N+++ + ++ + + G + N+ S +
Sbjct: 86 GTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG---GVLANVLSSAAQVGK 142
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
++Y ASK G+ ++LR EL K S +++ ++ P +E + + H +
Sbjct: 143 A--NESLYCASKWGMRGFLESLRAEL--KDSPLRLVNLYPSGIRSEFWDNTD---HVDPS 195
Query: 183 PTLQSEDIADQVVYLLKTPAHV 204
+ ED A ++ L+ +
Sbjct: 196 GFMTPEDAAAYMLDALEARSSC 217
Score = 109 bits (274), Expect = 2e-28
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G + N+ S + ++Y ASK G+ ++LR EL K S +++ ++ P +
Sbjct: 128 GVLANVLSSAAQVGKA--NESLYCASKWGMRGFLESLRAEL--KDSPLRLVNLYPSGIRS 183
Query: 275 EIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIVP 320
E + + H + + ED A ++ L+ + +T+L I
Sbjct: 184 EFWDNTD---HVDPSGFMTPEDAAAYMLDALEARSSCHVTDLFIGR 226
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 160 bits (407), Expect = 3e-48
Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 16/203 (7%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
R E + + L + R DL + +E+ F E ++++A
Sbjct: 28 TYLTGRSESKLSTVTNCLS---NNVGYRARDLASHQEVEQLF----EQLDSIPSTVVHSA 80
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G L + E+ + + E N+ + RE + ++ I S + +
Sbjct: 81 GSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQ---PVNVVMIMSTAAQQPK 137
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
+ Y A K V + +++R EL K +K+ ++ PG ATE ++ + + +
Sbjct: 138 A--QESTYCAVKWAVKGLIESVRLEL--KGKPMKIIAVYPGGMATEFWETSGKSL--DTS 191
Query: 183 PTLQSEDIADQVVYLLKTPAHVQ 205
+ +ED A + L +
Sbjct: 192 SFMSAEDAALMIHGALANIGNGY 214
Score = 109 bits (276), Expect = 6e-29
Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 22/137 (16%)
Query: 200 TPAHVQSMFANNID----------------NGYIININSISGHRVLPIDGHAMYAASKHG 243
P +Q++ NN+ ++ I S + + + Y A K
Sbjct: 92 DPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKA--QESTYCAVKWA 149
Query: 244 VTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTLQSEDIADQVVY 303
V + +++R EL K +K+ ++ PG ATE ++ + + + + +ED A +
Sbjct: 150 VKGLIESVRLEL--KGKPMKIIAVYPGGMATEFWETSGKSL--DTSSFMSAEDAALMIHG 205
Query: 304 LLKTPAHVQITELTIVP 320
L + ++++T+
Sbjct: 206 ALANIGNGYVSDITVNR 222
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 160 bits (406), Expect = 1e-47
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
++ LARR E ++ + +VD+ ++ ++ + G ++NNA
Sbjct: 43 LLLLARRVERLKALNLP------NTLCAQVDVTDKYTFDTAITRAEKIY-GPADAIVNNA 95
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G++ + + E +W+ +++VNVL L + M A + G IINI+SI+G +
Sbjct: 96 GMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR--NCGTIINISSIAGKKTF 153
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIF--------KAAN 174
P HA Y +K V IS+ +R E+ S ++V +I+P TE+ K
Sbjct: 154 P--DHAAYCGTKFAVHAISENVREEVA--ASNVRVMTIAPSAVKTELLSHTTSQQIKDGY 209
Query: 175 WPVHDPKTPTLQSEDIADQVVYLLKTPAHVQ 205
L ++D+A V++ + P +V
Sbjct: 210 DAWRVDMGGVLAADDVARAVLFAYQQPQNVC 240
Score = 110 bits (277), Expect = 1e-28
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI+SI+G + P HA Y +K V IS+ +R E+ S ++V +I+P T
Sbjct: 139 GTIINISSIAGKKTFP--DHAAYCGTKFAVHAISENVREEVA--ASNVRVMTIAPSAVKT 194
Query: 275 EIF--------KAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIVP 320
E+ K L ++D+A V++ + P +V I E+ + P
Sbjct: 195 ELLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIREIALAP 248
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 154 bits (391), Expect = 1e-45
Identities = 38/203 (18%), Positives = 81/203 (39%), Gaps = 10/203 (4%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
++V +R +++K++ E D+ + ++ I E + G + ++NN
Sbjct: 35 VLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVERY-GHIDCLVNN 93
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ L+ E + N+ T+ M +G+I I S++ +
Sbjct: 94 AGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAATKA 151
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
++Y SK G + + +R +K +++T + PG T ++ + + +
Sbjct: 152 FR--HSSIYCMSKFGQRGLVETMRLYA--RKCNVRITDVQPGAVYTPMWGKVD---DEMQ 204
Query: 182 TPTLQSEDIADQVVYLLKTPAHV 204
+ EDIA VV P+
Sbjct: 205 ALMMMPEDIAAPVVQAYLQPSRT 227
Score = 102 bits (256), Expect = 8e-26
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G+I I S++ + ++Y SK G + + +R +K +++T + PG T
Sbjct: 138 GHIFFITSVAATKAFR--HSSIYCMSKFGQRGLVETMRLYA--RKCNVRITDVQPGAVYT 193
Query: 275 EIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIVP 320
++ + + + + EDIA VV P+ + E+ + P
Sbjct: 194 PMWGKVD---DEMQALMMMPEDIAAPVVQAYLQPSRTVVEEIILRP 236
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 141 bits (358), Expect = 2e-40
Identities = 48/201 (23%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+V + +++ A + + K+H VD N ++I + + +K G V +++NN
Sbjct: 57 KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI-GDVSILVNN 115
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+V + L + + + +EVNVLA T+ +M N ++G+I+ + S +GH
Sbjct: 116 AGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN--NHGHIVTVASAAGHVS 173
Query: 122 LPIDGHAMYAASKHGVTVISDALRREL-VNKKSRIKVTSISPGMTATEIFKAANWPVHDP 180
+P Y +SK L EL + + +K T + P T K +
Sbjct: 174 VP--FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS----TS 227
Query: 181 KTPTLQSEDIADQVVYLLKTP 201
PTL+ E++ +++++ + T
Sbjct: 228 LGPTLEPEEVVNRLMHGILTE 248
Score = 78.4 bits (194), Expect = 6e-17
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 194 VVYLLKTPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRR 253
+ K A + +M NN +G+I+ + S +GH +P Y +SK L
Sbjct: 143 HFWTTK--AFLPAMTKNN--HGHIVTVASAAGHVSVP--FLLAYCSSKFAAVGFHKTLTD 196
Query: 254 EL-VNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTP 308
EL + + +K T + P T K + PTL+ E++ +++++ + T
Sbjct: 197 ELAALQITGVKTTCLCPNFVNTGFIKNPS----TSLGPTLEPEEVVNRLMHGILTE 248
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 138 bits (349), Expect = 6e-39
Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 9/200 (4%)
Query: 3 VVGLARREENIQKMAKELEQYPG-KLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
VV AR +E +QK+ + H + + + GG+ ++I N
Sbjct: 55 VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM-GGLDMLILN 113
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
+ L + R EVN L+ + T AA M S NG I+ ++S++G
Sbjct: 114 HITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTV-AALPMLKQS--NGSIVVVSSLAGKVA 170
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
P A Y+ASK + ++R+E + + +T G+ TE A
Sbjct: 171 YP--MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKA--VSGIVH 226
Query: 182 TPTLQSEDIADQVVYLLKTP 201
E+ A +++
Sbjct: 227 MQAAPKEECALEIIKGGALR 246
Score = 86.2 bits (214), Expect = 1e-19
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
NG I+ ++S++G P A Y+ASK + ++R+E + + +T G+
Sbjct: 156 NGSIVVVSSLAGKVAYP--MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLID 213
Query: 274 TEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTP 308
TE A E+ A +++
Sbjct: 214 TETAMKA--VSGIVHMQAAPKEECALEIIKGGALR 246
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 135 bits (343), Expect = 3e-38
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 14/208 (6%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V RR + +Q+ A E+ D+ + + F E F G V V+ NNA
Sbjct: 55 VALAGRRLDALQETAAEI---GDDALCVPTDVTDPDSVRALFTATVEKF-GRVDVLFNNA 110
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G P+ +W+ + + N+ +CT+EA + M A G IIN SIS
Sbjct: 111 GTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP 170
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD-- 179
P A Y A+KH +T ++ + + + I I G T + + V
Sbjct: 171 RP--YSAPYTATKHAITGLTKSTSLDG--RVHDIACGQIDIGNADTPMAQKMKAGVPQAD 226
Query: 180 ---PKTPTLQSEDIADQVVYLLKTPAHV 204
P + +A VVY+ P
Sbjct: 227 LSIKVEPVMDVAHVASAVVYMASLPLDA 254
Score = 90.4 bits (225), Expect = 3e-21
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 9/122 (7%)
Query: 204 VQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIK 263
+ M A G IIN SIS P A Y A+KH +T ++ + + + I
Sbjct: 146 FRVMKAQEPRGGRIINNGSISATSPRP--YSAPYTATKHAITGLTKSTSLDG--RVHDIA 201
Query: 264 VTSISPGMTATEIFKAANWPVHD-----PKTPTLQSEDIADQVVYLLKTPAHVQITELTI 318
I G T + + V P + +A VVY+ P + +TI
Sbjct: 202 CGQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDVAHVASAVVYMASLPLDANVQFMTI 261
Query: 319 VP 320
+
Sbjct: 262 MA 263
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 132 bits (335), Expect = 4e-37
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 10/203 (4%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV AR E ++ + +E+ G+ + DL + I + G V++NNA
Sbjct: 56 VVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH-GRCDVLVNNA 114
Query: 63 GLV-GNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G+ PL + + +W + VN+ A + R A +M A G+IINI+S++G
Sbjct: 115 GVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA--KRGHIINISSLAGKNP 172
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
+ A Y ASK G+ + + EL ++ +++V+ ++PG TE
Sbjct: 173 VA--DGAAYTASKWGLNGLMTSAAEEL--RQHQVRVSLVAPGSVRTEF--GVGLSAKKSA 226
Query: 182 TPTLQSEDIADQVVYLLKTPAHV 204
++ +DIAD V L
Sbjct: 227 LGAIEPDDIADVVALLATQADQS 249
Score = 83.0 bits (206), Expect = 1e-18
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G+IINI+S++G + A Y ASK G+ + + EL ++ +++V+ ++PG T
Sbjct: 159 GHIINISSLAGKNPVA--DGAAYTASKWGLNGLMTSAAEEL--RQHQVRVSLVAPGSVRT 214
Query: 275 EIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIVP 320
E ++ +DIAD V L I+E+ + P
Sbjct: 215 EF--GVGLSAKKSALGAIEPDDIADVVALLATQADQSFISEVLVRP 258
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 132 bits (333), Expect = 5e-37
Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 15/218 (6%)
Query: 1 MIVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
V R E + + E+E G++ AR +D RNE E+ + V I
Sbjct: 32 FTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADA--HAPLEVTIF 89
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
N G N P+ +R ++E+ A + RE+A+ M A+ G I + + R
Sbjct: 90 NVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH--GQGKIFFTGATASLR 147
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP 180
G A +A++K G+ ++ ++ REL+ K + I T + +
Sbjct: 148 GGS--GFAAFASAKFGLRAVAQSMARELMPKNIHV-AHLIIDSGVDTAWVRERREQMFGK 204
Query: 181 KTPT-----LQSEDIADQVVYLLKTPAHVQSMFANNID 213
+ +A L + P S + ++
Sbjct: 205 DALANPDLLMPPAAVAGAYWQLYQQPK---SAWTFEME 239
Score = 71.9 bits (177), Expect = 9e-15
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I + + R G A +A++K G+ ++ ++ REL+ K + I T
Sbjct: 135 GKIFFTGATASLRGGS--GFAAFASAKFGLRAVAQSMARELMPKNIHV-AHLIIDSGVDT 191
Query: 275 EIFKAANWPVHDPKTPT-----LQSEDIADQVVYLLKTPAHVQITELTIVP 320
+ + + +A L + P E+ I P
Sbjct: 192 AWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLYQQPKSAWTFEMEIRP 242
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 129 bits (326), Expect = 2e-36
Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 30/205 (14%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNE---KEILDTFQWIKETFKGGVHVMI 59
++ RR + ++A+E+ A DL +E K +L+ G + +++
Sbjct: 25 LLLSGRRAGALAELAREVGA-----RALPADLADELEAKALLEEA--------GPLDLLV 71
Query: 60 NNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGH 119
+ G G A + + + ++L + + + +
Sbjct: 72 HAVGKAGRASVREAGRDLVEEMLAAHLLT----AAFVLKHARFQ--KGARAVFFGAYPRY 125
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD 179
+P G A YAA+K + +A R+EL + + + + AT ++
Sbjct: 126 VQVP--GFAAYAAAKGALEAYLEAARKEL--LREGVHLVLVRLPAVATGLWAPLG----G 177
Query: 180 PKTPTLQSEDIADQVVYLLKTPAHV 204
P L E+ A +V+ L
Sbjct: 178 PPKGALSPEEAARKVLEGLFREPVP 202
Score = 94.5 bits (236), Expect = 2e-23
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
+ + + +P G A YAA+K + +A R+EL + + + + AT
Sbjct: 114 ARAVFFGAYPRYVQVP--GFAAYAAAKGALEAYLEAARKEL--LREGVHLVLVRLPAVAT 169
Query: 275 EIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITEL 316
++ P L E+ A +V+ L + E+
Sbjct: 170 GLWAPLG----GPPKGALSPEEAARKVLEGLFREPVPALLEV 207
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 128 bits (323), Expect = 2e-35
Identities = 40/221 (18%), Positives = 89/221 (40%), Gaps = 25/221 (11%)
Query: 3 VVGLARREENIQKMAKEL--EQYPGKLHARKVDLRNEKEILDTFQWIKETFK---GGVHV 57
++ AR E ++++ +EL +Q K+ DL E + ++E + +
Sbjct: 36 MLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLL 95
Query: 58 MINNAGLVGN---APLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININ 114
+INNA +G+ L + + N + +N+ ++ T + + + ++NI+
Sbjct: 96 LINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNIS 155
Query: 115 SISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAAN 174
S+ + P G +Y A K ++ L E + ++V S +PG ++ + A
Sbjct: 156 SLCALQ--PYKGWGLYCAGKAARDMLYQVLAAE----EPSVRVLSYAPGPLDNDMQQLAR 209
Query: 175 WPVHDPKTPT-----------LQSEDIADQVVYLLKTPAHV 204
DP+ + + A +++ LL+
Sbjct: 210 ETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQ 250
Score = 71.2 bits (175), Expect = 2e-14
Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 204 VQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIK 263
+ + + + ++NI+S+ + P G +Y A K ++ L E + ++
Sbjct: 138 LNAFQDSPGLSKTVVNISSLCALQ--PYKGWGLYCAGKAARDMLYQVLAAE----EPSVR 191
Query: 264 VTSISPGMTATEIFKAANWPVHDPKTPT-----------LQSEDIADQVVYLLKTPAHV 311
V S +PG ++ + A DP+ + + A +++ LL+
Sbjct: 192 VLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQ 250
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 126 bits (320), Expect = 1e-34
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 12/207 (5%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
VV RR + + A E+ + + A D+ + ++ F ++ F + +++NN
Sbjct: 60 VVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF-ARLDLLVNN 118
Query: 62 AGLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
AG PL E+W I N+ +CT+ A + M A + G IIN SIS
Sbjct: 119 AGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT 178
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD- 179
P A Y A+KH +T ++ + + + I I G AT++ + V
Sbjct: 179 PRP--NSAPYTATKHAITGLTKSTALDG--RMHDIACGQIDIGNAATDMTARMSTGVLQA 234
Query: 180 ----PKTPTLQSEDIADQVVYLLKTPA 202
PT+ E IA+ VVY+ P
Sbjct: 235 NGEVAAEPTIPIEHIAEAVVYMASLPL 261
Score = 79.6 bits (197), Expect = 3e-17
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 204 VQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIK 263
+ M A G IIN SIS P A Y A+KH +T ++ + + + I
Sbjct: 155 FRMMKAQTPRGGRIINNGSISAQTPRP--NSAPYTATKHAITGLTKSTALDG--RMHDIA 210
Query: 264 VTSISPGMTATEIFKAANWPVHD-----PKTPTLQSEDIADQVVYLLKTPAHVQITELTI 318
I G AT++ + V PT+ E IA+ VVY+ P + +T+
Sbjct: 211 CGQIDIGNAATDMTARMSTGVLQANGEVAAEPTIPIEHIAEAVVYMASLPLSANVLTMTV 270
Query: 319 VP 320
+
Sbjct: 271 MA 272
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 117 bits (296), Expect = 2e-31
Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 27/230 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPG-KLHARKVDL-RNEKEILDTFQWIKETFKGGVHVMIN 60
+ R EN +A+ P + D+ E + I + V ++IN
Sbjct: 32 NFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL-KTVDILIN 90
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMF-ANSIDNGYIININSISGH 119
AG++ + + +N L T G I NI S++G
Sbjct: 91 GAGIL--------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF 142
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD 179
+ +Y+ASK V +++L + + + SI+PG+T T + N +
Sbjct: 143 NAIH--QVPVYSASKAAVVSFTNSLAKLA--PITGVTAYSINPGITRTPLVHTFNSWLDV 198
Query: 180 --------PKTPTLQSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININ 221
PT SE V ++ + +D G + I
Sbjct: 199 EPRVAELLLSHPTQTSEQCGQNFVKAIEANKNGAIW---KLDLGTLEAIE 245
Score = 73.5 bits (181), Expect = 3e-15
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I NI S++G + +Y+ASK V +++L + + + SI+PG+T T
Sbjct: 131 GIIANICSVTGFNAIH--QVPVYSASKAAVVSFTNSLAKLA--PITGVTAYSINPGITRT 186
Query: 275 EIFKAANWPVHD--------PKTPTLQSEDIADQVVYLLKTPAHVQI 313
+ N + PT SE V ++ + I
Sbjct: 187 PLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANKNGAI 233
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 116 bits (294), Expect = 5e-31
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V AR + +Q +A E+ GK + D+ ++ + GG+ + + NA
Sbjct: 59 VAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL-GGIDIAVCNA 117
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+V + E+++ I + NV + + + AA++M G II S+SGH +
Sbjct: 118 GIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQG-LGGTIITTASMSGHIIN 176
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEI 169
+ Y SK V ++ A+ EL + I+V S+SPG TE+
Sbjct: 177 IPQQVSHYCTSKAAVVHLTKAMAVELAPHQ--IRVNSVSPGYIRTEL 221
Score = 52.5 bits (127), Expect = 4e-08
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G II S+SGH + + Y SK V ++ A+ EL + I+V S+SPG T
Sbjct: 162 GTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQ--IRVNSVSPGYIRT 219
Query: 275 EI 276
E+
Sbjct: 220 EL 221
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 116 bits (292), Expect = 5e-31
Identities = 33/212 (15%), Positives = 77/212 (36%), Gaps = 29/212 (13%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+V G+AR E ++K+ E+Y + D+ + + + G + ++ N
Sbjct: 30 VVYGVARSEAPLKKLK---EKYGDRFFYVVGDITEDSVLKQLVNAAVKGH-GKIDSLVAN 85
Query: 62 AGLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
AG++ + + W+ +Y++N ++ A + + G ++ ++S + +
Sbjct: 86 AGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSSDACNM 142
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD- 179
Y +SK + + L E + ++K +++PG+ T++ V
Sbjct: 143 YFS--SWGAYGSSKAALNHFAMTLANE----ERQVKAIAVAPGIVDTDMQVNIRENVGPS 196
Query: 180 --------------PKTPTLQSEDIADQVVYL 197
L S A L
Sbjct: 197 SMSAEQLKMFRGLKENNQLLDSSVPATVYAKL 228
Score = 65.7 bits (161), Expect = 1e-12
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 21/120 (17%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
NG ++ ++S + + Y +SK + + L E + ++K +++PG+
Sbjct: 129 NGNVVFVSSDACNMYFS--SWGAYGSSKAALNHFAMTLANE----ERQVKAIAVAPGIVD 182
Query: 274 TEIFKAANWPVHD---------------PKTPTLQSEDIADQVVYLLKTPAHVQITELTI 318
T++ V L S A L + +
Sbjct: 183 TDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYL 242
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 117 bits (295), Expect = 7e-31
Identities = 34/179 (18%), Positives = 70/179 (39%), Gaps = 11/179 (6%)
Query: 1 MIVVGLARREENIQKMAKELEQY--PGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVM 58
V R+++I K LE ++ ++D+ + + ++ F G V ++
Sbjct: 33 CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF-GPVSIL 91
Query: 59 INNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDN----GYIININ 114
NNAG+ P+ + W + VN+ + M G+++N
Sbjct: 92 CNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTA 151
Query: 115 SISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAA 173
S++ +Y +K V +S++L L K I V+ + PG+ + I+ +
Sbjct: 152 SMAAFLAAG--SPGIYNTTKFAVRGLSESLHYSL--LKYEIGVSVLCPGLVKSYIYASD 206
Score = 71.3 bits (175), Expect = 3e-14
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 194 VVYLLKT--PAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDAL 251
VV + T P V+ + A G+++N S++ +Y +K V +S++L
Sbjct: 122 VVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAG--SPGIYNTTKFAVRGLSESL 179
Query: 252 RRELVNKKSRIKVTSISPGMTATEIFKAA 280
L K I V+ + PG+ + I+ +
Sbjct: 180 HYSL--LKYEIGVSVLCPGLVKSYIYASD 206
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 115 bits (291), Expect = 1e-30
Identities = 38/213 (17%), Positives = 81/213 (38%), Gaps = 26/213 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+V AR E ++ +AK++ + + D+ ++ ++ + + G V V+INNA
Sbjct: 38 LVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY-GRVDVVINNA 96
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
V P + E R+ E+ V + ++ + G ++N+NS+
Sbjct: 97 FRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK---GAVVNVNSMVVRHS 153
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
+ Y +K + +S L EL K I+V S+ PG K+
Sbjct: 154 QA--KYGAYKMAKSALLAMSQTLATELGEKG--IRVNSVLPGYIWGGTLKSYFEHQAGKY 209
Query: 182 TPTL-----------------QSEDIADQVVYL 197
++ +++A ++++
Sbjct: 210 GTSVEDIYNAAAAGSDLKRLPTEDEVASAILFM 242
Score = 57.9 bits (141), Expect = 6e-10
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++N+NS+ + Y +K + +S L EL K I+V S+ PG
Sbjct: 140 GAVVNVNSMVVRHSQA--KYGAYKMAKSALLAMSQTLATELGEKG--IRVNSVLPGYIWG 195
Query: 275 EIFKAANWPVHDPKTPTL-----------------QSEDIADQVVYL 304
K+ ++ +++A ++++
Sbjct: 196 GTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFM 242
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 114 bits (289), Expect = 2e-30
Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 15/204 (7%)
Query: 2 IVVGLARREENIQKMAKELEQYPG-KLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
+ + A R + ++ KELE+ G K A K + + + + + F G + I
Sbjct: 49 VAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADF-GQIDAFIA 107
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
NAG ++ + G E W ++ +V++ C + G ++ S+SGH
Sbjct: 108 NAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG--TGSLVITASMSGHI 165
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD- 179
Y +K G ++ +L E +V SISPG T +
Sbjct: 166 ANFPQEQTSYNVAKAGCIHMARSLANEWR---DFARVNSISPGYIDTGLSDFVPKETQQL 222
Query: 180 --PKTPTL----QSEDIADQVVYL 197
P + ++++ VY
Sbjct: 223 WHSMIP-MGRDGLAKELKGAYVYF 245
Score = 57.9 bits (141), Expect = 7e-10
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ S+SGH Y +K G ++ +L E +V SISPG T
Sbjct: 153 GSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWR---DFARVNSISPGYIDT 209
Query: 275 EIFKAANWPVHD---PKTPTL----QSEDIADQVVYL 304
+ P + ++++ VY
Sbjct: 210 GLSDFVPKETQQLWHSMIP-MGRDGLAKELKGAYVYF 245
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 115 bits (290), Expect = 2e-30
Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 16/204 (7%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V +K + Y A K ++ + K + +T ++ F G + V + NA
Sbjct: 61 VAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDF-GTIDVFVANA 119
Query: 63 G--LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
G + + W I V++ + C+ + N G +I +SISG
Sbjct: 120 GVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG--KGSLIITSSISGKI 177
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD- 179
V A Y +K T ++ +L E +V +ISPG T+I A+ +
Sbjct: 178 VNIPQLQAPYNTAKAACTHLAKSLAIEWA---PFARVNTISPGYIDTDITDFASKDMKAK 234
Query: 180 --PKTPTL----QSEDIADQVVYL 197
TP L ++++ +YL
Sbjct: 235 WWQLTP-LGREGLTQELVGGYLYL 257
Score = 58.7 bits (143), Expect = 4e-10
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G +I +SISG V A Y +K T ++ +L E +V +ISPG T
Sbjct: 165 GSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWA---PFARVNTISPGYIDT 221
Query: 275 EIFKAANWPVHD---PKTPTL----QSEDIADQVVYL 304
+I A+ + TP L ++++ +YL
Sbjct: 222 DITDFASKDMKAKWWQLTP-LGREGLTQELVGGYLYL 257
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 113 bits (286), Expect = 5e-30
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 22/208 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ E K ++L + + +D+ N + + + + + E G V +++ A
Sbjct: 40 VIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE-GRVDILVACA 98
Query: 63 GL-VGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G+ + +W ++N+ + + + M G I+ I S+SG V
Sbjct: 99 GICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQK--QGVIVAIGSMSGLIV 156
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP- 180
A Y ASK GV +L E I+ +++P T + + + P
Sbjct: 157 NRPQQQAAYNASKAGVHQYIRSLAAEWAPHG--IRANAVAPTYIETTLTRFG---MEKPE 211
Query: 181 -------KTPTL----QSEDIADQVVYL 197
TP + Q +++A V +L
Sbjct: 212 LYDAWIAGTP-MGRVGQPDEVASVVQFL 238
Score = 57.5 bits (140), Expect = 8e-10
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+ I S+SG V A Y ASK GV +L E I+ +++P T
Sbjct: 143 GVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHG--IRANAVAPTYIET 200
Query: 275 EIFKAANWPVHDP--------KTPTL----QSEDIADQVVYL 304
+ + + P TP + Q +++A V +L
Sbjct: 201 TLTRFG---MEKPELYDAWIAGTP-MGRVGQPDEVASVVQFL 238
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 113 bits (285), Expect = 5e-30
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 20/203 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGK---LHARKVDLRNEKEILDTFQWIKETFKGGVHVMI 59
V+ L R EE ++++A + + G+ + + Q I + + ++
Sbjct: 39 VILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNY-PRLDGVL 97
Query: 60 NNAGLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISG 118
+NAGL+G P++ + W+++ +VNV A + T+ + + D G ++ +S G
Sbjct: 98 HNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS--DAGSLVFTSSSVG 155
Query: 119 HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH 178
+ YAASK + L E + R++V I+PG T T + +A +P
Sbjct: 156 RQGRA--NWGAYAASKFATEGMMQVLADEY---QQRLRVNCINPGGTRTAMRASA-FPTE 209
Query: 179 DPK---TPTLQSEDIADQVVYLL 198
DP+ TP DI ++L+
Sbjct: 210 DPQKLKTP----ADIMPLYLWLM 228
Score = 66.4 bits (163), Expect = 7e-13
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
D G ++ +S G + YAASK + L E + R++V I+PG T
Sbjct: 143 DAGSLVFTSSSVGRQGRA--NWGAYAASKFATEGMMQVLADEY---QQRLRVNCINPGGT 197
Query: 273 ATEIFKAANWPVHDPK---TPTLQSEDIADQVVYLL 305
T + +A +P DP+ TP DI ++L+
Sbjct: 198 RTAMRASA-FPTEDPQKLKTP----ADIMPLYLWLM 228
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 113 bits (285), Expect = 8e-30
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 17/205 (8%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
IV+ AR ++ + A+E+E+ K+ K ++ +I + FQ I ETF G + V +NN
Sbjct: 31 IVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF-GRLDVFVNN 89
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
A P+ E W +N AL C +EAA+ M N G+I++I+S+ R
Sbjct: 90 AASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN--GGGHIVSISSLGSIRY 147
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
L + SK + ++ L EL K+ I V ++S G T+ K D
Sbjct: 148 LE--NYTTVGVSKAALEALTRYLAVELSPKQ--IIVNAVSGGAIDTDALKHF-PNREDLL 202
Query: 182 TPTL---------QSEDIADQVVYL 197
+ +D+ D V +L
Sbjct: 203 EDARQNTPAGRMVEIKDMVDTVEFL 227
Score = 58.3 bits (142), Expect = 4e-10
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G+I++I+S+ R L + SK + ++ L EL K+ I V ++S G T
Sbjct: 134 GHIVSISSLGSIRYLE--NYTTVGVSKAALEALTRYLAVELSPKQ--IIVNAVSGGAIDT 189
Query: 275 EIFKAANWPVHDPKTPTL---------QSEDIADQVVYL 304
+ K D + +D+ D V +L
Sbjct: 190 DALKHF-PNREDLLEDARQNTPAGRMVEIKDMVDTVEFL 227
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 115 bits (289), Expect = 8e-30
Identities = 38/199 (19%), Positives = 78/199 (39%), Gaps = 9/199 (4%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
+ I A+E+E GK VD+R+E++I + + F GG+ +++NNA +
Sbjct: 83 PKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKKF-GGIDILVNNASAIS 141
Query: 67 NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDG 126
T++ + VN + ++ + + +I+NI+ +
Sbjct: 142 LTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKS--KVAHILNISPPLNLNPVWFKQ 199
Query: 127 HAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT-ATEIFKAANWPVHDPKTPTL 185
H Y +K+G+++ + E K I V ++ P T P ++
Sbjct: 200 HCAYTIAKYGMSMYVLGMAEEF---KGEIAVNALWPKTAIHTAAMDMLGGP--GIESQCR 254
Query: 186 QSEDIADQVVYLLKTPAHV 204
+ + IAD + + P
Sbjct: 255 KVDIIADAAYSIFQKPKSF 273
Score = 62.1 bits (151), Expect = 4e-11
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
+I+NI+ + H Y +K+G+++ + E K I V ++ P
Sbjct: 179 KVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEF---KGEIAVNALWPKTA 235
Query: 273 -ATEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHV 311
T P ++ + + IAD + + P
Sbjct: 236 IHTAAMDMLGGP--GIESQCRKVDIIADAAYSIFQKPKSF 273
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 113 bits (285), Expect = 9e-30
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 23/208 (11%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+V R + + L EQ+ +H +DL + + E F GG+ V++NN
Sbjct: 47 LVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF-GGLDVLVNN 105
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ P+ + + + VN+ A + ++M A + G II + S +
Sbjct: 106 AGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAG-EGGAIITVASAAALAP 164
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP- 180
LP H Y SK G+ + + L REL I+ S+ P + TE+ + D
Sbjct: 165 LP--DHYAYCTSKAGLVMATKVLARELG--PHGIRANSVCPTVVLTEMGQRV---WGDEA 217
Query: 181 -------KTPTL----QSEDIADQVVYL 197
+ P L +++D VV+L
Sbjct: 218 KSAPMIARIP-LGRFAVPHEVSDAVVWL 244
Score = 58.7 bits (143), Expect = 3e-10
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 20/102 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G II + S + LP H Y SK G+ + + L REL I+ S+ P + T
Sbjct: 151 GAIITVASAAALAPLP--DHYAYCTSKAGLVMATKVLARELG--PHGIRANSVCPTVVLT 206
Query: 275 EIFKAANWPVHDP--------KTPTL----QSEDIADQVVYL 304
E+ + D + P L +++D VV+L
Sbjct: 207 EMGQRV---WGDEAKSAPMIARIP-LGRFAVPHEVSDAVVWL 244
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 112 bits (283), Expect = 1e-29
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 18/203 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGK---LHARKVDLRNEKEILDTFQWIKETFKGGVHVMI 59
VV L R E ++ +++ +++ + A ++ ++ + ++ F G + ++
Sbjct: 41 VVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF-GRLDGLL 99
Query: 60 NNAGLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISG 118
+NA ++G PL E + + VNV A + TR + + ++ I +S G
Sbjct: 100 HNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRS--EDASIAFTSSSVG 157
Query: 119 HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH 178
+ Y SK + L EL + ++ SI+PG T T + A +P
Sbjct: 158 RKGRA--NWGAYGVSKFATEGLMQTLADELEG-VTAVRANSINPGATRTGMRAQA-YPDE 213
Query: 179 DP---KTPTLQSEDIADQVVYLL 198
+P P EDI +YL+
Sbjct: 214 NPLNNPAP----EDIMPVYLYLM 232
Score = 65.2 bits (160), Expect = 2e-12
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
++ I +S G + Y SK + L EL + ++ SI+PG T
Sbjct: 145 EDASIAFTSSSVGRKGRA--NWGAYGVSKFATEGLMQTLADELEG-VTAVRANSINPGAT 201
Query: 273 ATEIFKAANWPVHDP---KTPTLQSEDIADQVVYLL 305
T + A +P +P P EDI +YL+
Sbjct: 202 RTGMRAQA-YPDENPLNNPAP----EDIMPVYLYLM 232
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 112 bits (282), Expect = 2e-29
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 20/207 (9%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+VV +E+ + +E+++ G+ A K D+ E ++++ Q + F G + VMINN
Sbjct: 34 VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF-GKLDVMINN 92
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AGL W + + N+ + +REA + N G +IN++S+
Sbjct: 93 AGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEND-IKGTVINMSSVHE--K 149
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
+P YAASK G+ ++++ L E K I+V +I PG T I DP+
Sbjct: 150 IPWPLFVHYAASKGGMKLMTETLALEYAPKG--IRVNNIGPGAINTPINAEK---FADPE 204
Query: 182 TPTL-----------QSEDIADQVVYL 197
+ E+IA +L
Sbjct: 205 QRADVESMIPMGYIGEPEEIAAVAAWL 231
Score = 59.1 bits (144), Expect = 3e-10
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G +IN++S+ +P YAASK G+ ++++ L E K I+V +I PG T
Sbjct: 138 GTVINMSSVHE--KIPWPLFVHYAASKGGMKLMTETLALEYAPKG--IRVNNIGPGAINT 193
Query: 275 EIFKAANWPVHDPKTPTL-----------QSEDIADQVVYL 304
I DP+ + E+IA +L
Sbjct: 194 PINAEK---FADPEQRADVESMIPMGYIGEPEEIAAVAAWL 231
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 112 bits (282), Expect = 2e-29
Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 11/198 (5%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
+ I A + G+ A K D+R E ++ +TF GG+ +++NNA +
Sbjct: 44 PKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATVDTF-GGIDILVNNASAIW 102
Query: 67 NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDG 126
+++ + +VN +C + + N +I+ +
Sbjct: 103 LRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQA--PNPHILTLAPPPSLNPAWWGA 160
Query: 127 HAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT-ATEIFKA-ANWPVHDPKTPT 184
H Y +K G+++++ L E + + ++ P AT+ + P
Sbjct: 161 HTGYTLAKMGMSLVTLGLAAEF--GPQGVAINALWPRTVIATDAINMLPGVDAAACRRP- 217
Query: 185 LQSEDIADQVVYLLKTPA 202
E +AD +L A
Sbjct: 218 ---EIMADAAHAVLTREA 232
Score = 62.6 bits (153), Expect = 2e-11
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
N +I+ + H Y +K G+++++ L E + + ++ P
Sbjct: 140 PNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEF--GPQGVAINALWPRTV 197
Query: 273 -ATEIFKA-ANWPVHDPKTPTLQSEDIADQVVYLLKTPA 309
AT+ + P E +AD +L A
Sbjct: 198 IATDAINMLPGVDAAACRRP----EIMADAAHAVLTREA 232
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 112 bits (282), Expect = 3e-29
Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 8/194 (4%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+VV + +++ EL++ + A + D+ E++ F F GG+ +++N
Sbjct: 48 VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF-GGLDFVMSN 106
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
+G+ E + ++ +N ++ + G II +SI+
Sbjct: 107 SGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHC----RRGGRIILTSSIAAVMT 162
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
I HA+YA SK V A + K + V I+PG T++F +W
Sbjct: 163 -GIPNHALYAGSKAAVEGFCRAFAVDCGAKG--VTVNCIAPGGVKTDMFDENSWHYAPGG 219
Query: 182 TPTLQSEDIADQVV 195
+ E I + +
Sbjct: 220 YKGMPQEKIDEGLA 233
Score = 64.5 bits (158), Expect = 4e-12
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
G II +SI+ I HA+YA SK V A + K + V I+PG
Sbjct: 147 RGGRIILTSSIAAVMT-GIPNHALYAGSKAAVEGFCRAFAVDCGAKG--VTVNCIAPGGV 203
Query: 273 ATEIFKAANWPVHDPKTPTLQSEDIADQVV 302
T++F +W + E I + +
Sbjct: 204 KTDMFDENSWHYAPGGYKGMPQEKIDEGLA 233
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 110 bits (278), Expect = 5e-29
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 12/202 (5%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ R + +K AK + P ++ + D +E F ++ F G V ++NNA
Sbjct: 33 VMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF-GPVSTLVNNA 90
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ N + T +WR + VN+ + TR Q M IIN++SI G
Sbjct: 91 GIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG-LGASIINMSSIEGFVGD 149
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
P Y ASK V ++S + + K ++V ++ PG T +
Sbjct: 150 P--SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQ 207
Query: 183 PTL-------QSEDIADQVVYL 197
T + DIA VYL
Sbjct: 208 RTKTPMGHIGEPNDIAYICVYL 229
Score = 59.4 bits (145), Expect = 2e-10
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
IIN++SI G P Y ASK V ++S + + K ++V ++ PG T
Sbjct: 135 ASIINMSSIEGFVGDP--SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKT 192
Query: 275 EIFKAANWPVHDPKTPTL-------QSEDIADQVVYL 304
+ T + DIA VYL
Sbjct: 193 PLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYL 229
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 110 bits (278), Expect = 8e-29
Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 26/214 (12%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+VV A ++ +K+ E++ A K D+R EI+ F F G + + ++N
Sbjct: 45 VVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF-GHLDIAVSN 103
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
+G+V L E++ ++ +N REA + + + G I+ +S +
Sbjct: 104 SGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHL----TEGGRIVLTSSNTSKDF 159
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
+ H++Y+ SK V ++ +KK I V +++PG T T++F +
Sbjct: 160 -SVPKHSLYSGSKGAVDSFVRIFSKDCGDKK--ITVNAVAPGGTVTDMFHEVSHHYIPNG 216
Query: 182 TPTL------------------QSEDIADQVVYL 197
T +D+A+ V +L
Sbjct: 217 TSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFL 250
Score = 63.4 bits (155), Expect = 1e-11
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 21/110 (19%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
+ G I+ +S + + H++Y+ SK V ++ +KK I V +++PG T
Sbjct: 144 EGGRIVLTSSNTSKDF-SVPKHSLYSGSKGAVDSFVRIFSKDCGDKK--ITVNAVAPGGT 200
Query: 273 ATEIFKAANWPVHDPKTPTL------------------QSEDIADQVVYL 304
T++F + T +D+A+ V +L
Sbjct: 201 VTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFL 250
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 109 bits (276), Expect = 1e-28
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 20/206 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V E Q++A EL + + D+ +E + ++ G ++V++NNA
Sbjct: 33 VAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL-GTLNVLVNNA 88
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G++ + +G E + + ++N ++ I ++ +M G IIN+ S+S +
Sbjct: 89 GILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG---GSIINMASVSSWLPI 145
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKA--------AN 174
+A Y+ASK V+ ++ A + I+V SI P T + +A
Sbjct: 146 E--QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEM 203
Query: 175 WPVHDPKTP---TLQSEDIADQVVYL 197
E IA V++L
Sbjct: 204 VLHDPKLNRAGRAYMPERIAQLVLFL 229
Score = 59.8 bits (146), Expect = 1e-10
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IIN+ S+S + +A Y+ASK V+ ++ A + I+V SI P T
Sbjct: 131 GSIINMASVSSWLPIE--QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYT 188
Query: 275 EIFKA--------ANWPVHDPKTP---TLQSEDIADQVVYL 304
+ +A E IA V++L
Sbjct: 189 PMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFL 229
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 110 bits (278), Expect = 1e-28
Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 8/206 (3%)
Query: 1 MIVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
+V + +++ L H D+R+ E++ GGV V+ +
Sbjct: 56 ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL-GGVDVVFS 114
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
NAG+V PL + WR + ++++ + G+I S +G
Sbjct: 115 NAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQG-TGGHIAFTASFAG-- 171
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAA--NWPVH 178
++P G Y +K+GV +++ L RE+ K + I V+ + P + T++ +
Sbjct: 172 LVPNAGLGTYGVAKYGVVGLAETLAREV--KPNGIGVSVLCPMVVETKLVSNSERIRGAD 229
Query: 179 DPKTPTLQSEDIADQVVYLLKTPAHV 204
+ T + + V
Sbjct: 230 YGMSATPEGAFGPLPTQDESVSADDV 255
Score = 60.1 bits (146), Expect = 2e-10
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
G+I S +G ++P G Y +K+GV +++ L RE+ K + I V+ + P +
Sbjct: 159 TGGHIAFTASFAG--LVPNAGLGTYGVAKYGVVGLAETLAREV--KPNGIGVSVLCPMVV 214
Query: 273 ATEIFKAA--NWPVHDPKTPTLQSEDIADQVVYLLKTPAHV 311
T++ + + T + + V
Sbjct: 215 ETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDV 255
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 109 bits (276), Expect = 2e-28
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 16/198 (8%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
A+ + K+ ELE K+ + DL NE+E+ F + ++ F G V + IN G V
Sbjct: 45 AKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF-GKVDIAINTVGKVL 103
Query: 67 NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDG 126
P+ ++ + +N ++AA+ M NG+II I +
Sbjct: 104 KKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHM----NPNGHIITIATSLLAAYTG--F 157
Query: 127 HAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTL- 185
++ YA +K V + A +EL+ ++ I V +I+PG T F +
Sbjct: 158 YSTYAGNKAPVEHYTRAASKELMKQQ--ISVNAIAPGPMDTSFFYGQETKESTAFHKSQA 215
Query: 186 ------QSEDIADQVVYL 197
+ EDIA + +L
Sbjct: 216 MGNQLTKIEDIAPIIKFL 233
Score = 61.8 bits (151), Expect = 3e-11
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
NG+II I + ++ YA +K V + A +EL+ ++ I V +I+PG
Sbjct: 139 PNGHIITIATSLLAAYTG--FYSTYAGNKAPVEHYTRAASKELMKQQ--ISVNAIAPGPM 194
Query: 273 ATEIFKAANWPVHDPKTPTL-------QSEDIADQVVYL 304
T F + + EDIA + +L
Sbjct: 195 DTSFFYGQETKESTAFHKSQAMGNQLTKIEDIAPIIKFL 233
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 110 bits (276), Expect = 2e-28
Identities = 39/215 (18%), Positives = 88/215 (40%), Gaps = 27/215 (12%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
++V A E+ +++ +++ K ++ ++I+ F+ + F G + ++ +N
Sbjct: 56 VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF-GKLDIVCSN 114
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
+G+V + E++ ++ +N REA + + G +I + SI+G +
Sbjct: 115 SGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHL----EIGGRLILMGSITG-QA 169
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
+ HA+Y+ SK + + + ++ +KK I V ++PG T+++ A
Sbjct: 170 KAVPKHAVYSGSKGAIETFARCMAIDMADKK--ITVNVVAPGGIKTDMYHAVCREYIPNG 227
Query: 182 TPTL-------------------QSEDIADQVVYL 197
DIA V +L
Sbjct: 228 ENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFL 262
Score = 63.0 bits (154), Expect = 1e-11
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 22/111 (19%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
G +I + SI+G + + HA+Y+ SK + + + ++ +KK I V ++PG
Sbjct: 155 IGGRLILMGSITG-QAKAVPKHAVYSGSKGAIETFARCMAIDMADKK--ITVNVVAPGGI 211
Query: 273 ATEIFKAANWPVHDPKTPTL-------------------QSEDIADQVVYL 304
T+++ A DIA V +L
Sbjct: 212 KTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFL 262
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 109 bits (275), Expect = 3e-28
Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 25/208 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V RR++ + E+ G + D N E+ ++ +K G + V+ NA
Sbjct: 56 VFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEA-GRIDVLFVNA 111
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G PL E++ + ++ NV + ++A + ++ S +G
Sbjct: 112 GGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLL----ARGSSVVLTGSTAGSTGT 167
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
P ++YAASK + + +L K I++ ++SPG T T +
Sbjct: 168 P--AFSVYAASKAALRSFARNWILDL--KDRGIRINTLSPGPTETTGLVELAGKDPVQQQ 223
Query: 183 PTLQS-------------EDIADQVVYL 197
L + E++A ++L
Sbjct: 224 GLLNALAAQVPMGRVGRAEEVAAAALFL 251
Score = 63.0 bits (154), Expect = 1e-11
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
++ S +G P ++YAASK + + +L K I++ ++SPG T
Sbjct: 151 RGSSVVLTGSTAGSTGTP--AFSVYAASKAALRSFARNWILDL--KDRGIRINTLSPGPT 206
Query: 273 ATEIFKAANWPVHDPKTPTLQS-------------EDIADQVVYL 304
T + L + E++A ++L
Sbjct: 207 ETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALFL 251
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 109 bits (274), Expect = 4e-28
Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 14/202 (6%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
+ I AKE+E+ G+ D+R+ + E F GG+ + +NNA +
Sbjct: 47 PKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKTVEQF-GGIDICVNNASAIN 105
Query: 67 NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDG 126
+ +++ + + V ++ M DN +I+ ++
Sbjct: 106 LGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGR--DNPHILTLSPPIRLEP-KWLR 162
Query: 127 HAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT----ATEIFKAANWPVHDPKT 182
Y +K+G+T+ + + EL + + I ++ P T A + + + +
Sbjct: 163 PTPYMMAKYGMTLCALGIAEEL--RDAGIASNTLWPRTTVATAAVQNLLGGDEAMARSRK 220
Query: 183 PTLQSEDIADQVVYLLKTPAHV 204
P E AD +L P+
Sbjct: 221 P----EVYADAAYVVLNKPSSY 238
Score = 58.4 bits (142), Expect = 5e-10
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
DN +I+ ++ Y +K+G+T+ + + EL + + I ++ P T
Sbjct: 143 DNPHILTLSPPIRLEP-KWLRPTPYMMAKYGMTLCALGIAEEL--RDAGIASNTLWPRTT 199
Query: 273 ----ATEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHV 311
A + + + + P E AD +L P+
Sbjct: 200 VATAAVQNLLGGDEAMARSRKP----EVYADAAYVVLNKPSSY 238
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 108 bits (273), Expect = 5e-28
Identities = 32/215 (14%), Positives = 75/215 (34%), Gaps = 27/215 (12%)
Query: 3 VVGLARREENIQKMAKELEQYP--GKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
V AR E ++ L Q +L A D+ + ++ + + T G +++N
Sbjct: 35 VAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL-GCASILVN 93
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
NAG + E W ++ ++ R + + + I+ +NS+ +
Sbjct: 94 NAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESR--ADAAIVCVNSLLASQ 151
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP 180
P +A++ GV + ++ E K ++V I G+ + ++ +
Sbjct: 152 --PEPHMVATSAARAGVKNLVRSMAFEFAPK--GVRVNGILIGLVESGQWRRRFEAREER 207
Query: 181 KTPTL------------------QSEDIADQVVYL 197
+ + + A +++L
Sbjct: 208 ELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFL 242
Score = 57.6 bits (140), Expect = 8e-10
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 22/108 (20%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
I+ +NS+ + P +A++ GV + ++ E K ++V I G+ +
Sbjct: 139 AAIVCVNSLLASQ--PEPHMVATSAARAGVKNLVRSMAFEFAPK--GVRVNGILIGLVES 194
Query: 275 EIFKAANWPVHDPKTPTL------------------QSEDIADQVVYL 304
++ + + + + A +++L
Sbjct: 195 GQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFL 242
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 107 bits (270), Expect = 1e-27
Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 18/204 (8%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+V+ A + +++A ++E GK + D+ + + F +E F GGV V++NN
Sbjct: 54 VVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF-GGVDVLVNN 112
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG++ + + + VN+ REAAQ + G IIN+++ +
Sbjct: 113 AGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRL----RVGGRIINMSTSQVGLL 168
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
P + +YAA+K GV ++ L +EL + R I V +++PG TAT++F
Sbjct: 169 HP--SYGIYAAAKAGVEAMTHVLSKEL---RGRDITVNAVAPGPTATDLFLEGKSDEVRD 223
Query: 181 KTPTL-------QSEDIADQVVYL 197
+ L +DIA V +L
Sbjct: 224 RFAKLAPLERLGTPQDIAGAVAFL 247
Score = 58.7 bits (143), Expect = 4e-10
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGM 271
G IIN+++ + P + +YAA+K GV ++ L +EL + R I V +++PG
Sbjct: 153 VGGRIINMSTSQVGLLHP--SYGIYAAAKAGVEAMTHVLSKEL---RGRDITVNAVAPGP 207
Query: 272 TATEIFKAANWPVHDPKTPTL-------QSEDIADQVVYL 304
TAT++F + L +DIA V +L
Sbjct: 208 TATDLFLEGKSDEVRDRFAKLAPLERLGTPQDIAGAVAFL 247
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 107 bits (270), Expect = 1e-27
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 15/198 (7%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV +E + MA EL +D+ + F GG+HV++NNA
Sbjct: 34 VVFGDILDEEGKAMAAEL---ADAARYVHLDVTQPAQWKAAVDTAVTAF-GGLHVLVNNA 89
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G++ + +W+ I +VN+ + + R + M G IINI+SI G
Sbjct: 90 GILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA--GRGSIINISSIEGLAGT 147
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
Y A+K V ++ + EL S I+V SI PG+ T + P +T
Sbjct: 148 V--ACHGYTATKFAVRGLTKSTALELG--PSGIRVNSIHPGLVKTPMTDWV--PEDIFQT 201
Query: 183 P---TLQSEDIADQVVYL 197
+ ++++ VVYL
Sbjct: 202 ALGRAAEPVEVSNLVVYL 219
Score = 57.9 bits (141), Expect = 7e-10
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI+SI G Y A+K V ++ + EL S I+V SI PG+ T
Sbjct: 133 GSIINISSIEGLAGTV--ACHGYTATKFAVRGLTKSTALELG--PSGIRVNSIHPGLVKT 188
Query: 275 EIFKAANWPVHDPKTP---TLQSEDIADQVVYL 304
+ P +T + ++++ VVYL
Sbjct: 189 PMTDWV--PEDIFQTALGRAAEPVEVSNLVVYL 219
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 106 bits (268), Expect = 2e-27
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV + R ++ +AKE + VDL + I G V +++NNA
Sbjct: 34 VVAVTRTNSDLVSLAKEC----PGIEPVCVDLGDWDATEKALGGI-----GPVDLLVNNA 84
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
LV P E + + VN+ ++ ++ A+ M + G I+N++S+ H
Sbjct: 85 ALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAHVTF 143
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP-- 180
P Y+++K +T+++ A+ EL +I+V S++P + T++ K DP
Sbjct: 144 P--NLITYSSTKGAMTMLTKAMAMELG--PHKIRVNSVNPTVVLTDMGKKV---SADPEF 196
Query: 181 ------KTPTL---QSEDIADQVVYL 197
+ P + ED+ + +++L
Sbjct: 197 ARKLKERHPLRKFAEVEDVVNSILFL 222
Score = 57.5 bits (140), Expect = 6e-10
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N++S+ H P Y+++K +T+++ A+ EL +I+V S++P + T
Sbjct: 129 GSIVNVSSMVAHVTFP--NLITYSSTKGAMTMLTKAMAMELG--PHKIRVNSVNPTVVLT 184
Query: 275 EIFKAANWPVHDP--------KTPTL---QSEDIADQVVYL 304
++ K DP + P + ED+ + +++L
Sbjct: 185 DMGKKV---SADPEFARKLKERHPLRKFAEVEDVVNSILFL 222
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 107 bits (269), Expect = 2e-27
Identities = 41/207 (19%), Positives = 87/207 (42%), Gaps = 18/207 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V +R E+ + + + + + DL + E Q + F G +++++NNA
Sbjct: 48 VYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNA 107
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+V + + + I N A ++ A + A+ NG +I ++SI+G
Sbjct: 108 GVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAG--FS 163
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
+ ++Y+ASK + ++ +L E K I+V S++PG+ T + + A K
Sbjct: 164 ALPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSVAPGVILTPLVETAIKKNPHQKE 221
Query: 183 PTLQS------------EDIADQVVYL 197
++++ + +L
Sbjct: 222 EIDNFIVKTPMGRAGKPQEVSALIAFL 248
Score = 49.4 bits (119), Expect = 4e-07
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
NG +I ++SI+G + ++Y+ASK + ++ +L E K I+V S++PG+
Sbjct: 150 NGNVIFLSSIAG--FSALPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSVAPGVIL 205
Query: 274 TEIFKAANWPVHDPKTPTLQS------------EDIADQVVYL 304
T + + A K ++++ + +L
Sbjct: 206 TPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFL 248
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 107 bits (269), Expect = 2e-27
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 10/179 (5%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V+G ARR E + + YP + A +D+ + + I + + G V V++NN
Sbjct: 31 TVIGTARRTEALDDLV---AAYPDRAEAISLDVTDGERIDVVAADVLARY-GRVDVLVNN 86
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG + R+++E++V TR M +G ++NI+S G
Sbjct: 87 AGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG--SGSVVNISSFGGQLS 144
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP 180
G + Y+A+K + +S+ L E+ IKV + PG T +F +
Sbjct: 145 FA--GFSAYSATKAALEQLSEGLADEV--APFGIKVLIVEPGAFRTNLFGKGAAYFSEE 199
Score = 60.4 bits (147), Expect = 1e-10
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++NI+S G G + Y+A+K + +S+ L E+ IKV + PG T
Sbjct: 131 GSVVNISSFGGQLSFA--GFSAYSATKAALEQLSEGLADEV--APFGIKVLIVEPGAFRT 186
Query: 275 EIFKAANWPVHDP 287
+F +
Sbjct: 187 NLFGKGAAYFSEE 199
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 106 bits (267), Expect = 2e-27
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV +E A+EL + +D+ E++ + +E F G V ++NNA
Sbjct: 32 VVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF-GSVDGLVNNA 87
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ L + E++R + E+N+ + I + +M G I+NI+S +G L
Sbjct: 88 GISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA--GGGSIVNISSAAGLMGL 145
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD--- 179
+ Y ASK GV +S EL RI+V S+ PGMT T + +
Sbjct: 146 A--LTSSYGASKWGVRGLSKLAAVELG--TDRIRVNSVHPGMTYTPMTAETGIRQGEGNY 201
Query: 180 PKTPT----LQSEDIADQVVYL 197
P TP + +IA VV L
Sbjct: 202 PNTPMGRVGNEPGEIAGAVVKL 223
Score = 57.1 bits (139), Expect = 1e-09
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+NI+S +G L + Y ASK GV +S EL RI+V S+ PGMT T
Sbjct: 131 GSIVNISSAAGLMGLA--LTSSYGASKWGVRGLSKLAAVELG--TDRIRVNSVHPGMTYT 186
Query: 275 EIFKAANWPVHD---PKTPT----LQSEDIADQVVYL 304
+ + P TP + +IA VV L
Sbjct: 187 PMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKL 223
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 106 bits (268), Expect = 3e-27
Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 20/209 (9%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V + R + ++ +++ +++ K A + D+ N + T Q I G + +I N
Sbjct: 41 VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL-GPISGLIAN 99
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ P T E + +Y+VNV + R A+ G I+ +S+S +
Sbjct: 100 AGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQII 158
Query: 122 LPID-----GHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANW 175
Y +SK + + L E S I+V ++SPG T+ +
Sbjct: 159 NQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWA---SAGIRVNALSPGYVNTDQTAHMDK 215
Query: 176 PVHD---PKTPTL----QSEDIADQVVYL 197
+ D P L Q E++ Q + L
Sbjct: 216 KIRDHQASNIP-LNRFAQPEEMTGQAILL 243
Score = 52.6 bits (127), Expect = 4e-08
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 215 GYIININSISGHRVLPID-----GHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSIS 268
G I+ +S+S + Y +SK + + L E S I+V ++S
Sbjct: 145 GSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWA---SAGIRVNALS 201
Query: 269 PGMTATEIFKAANWPVHD---PKTPTL----QSEDIADQVVYL 304
PG T+ + + D P L Q E++ Q + L
Sbjct: 202 PGYVNTDQTAHMDKKIRDHQASNIP-LNRFAQPEEMTGQAILL 243
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 106 bits (267), Expect = 3e-27
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 26/214 (12%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+V +AR+ + + + A+ L E++ ++ VD+ + + + ++ +F GG +++NN
Sbjct: 34 IVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF-GGADILVNN 92
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG N + EKW+ +E+ V+A R M A G II+ SI V
Sbjct: 93 AGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR--GGGAIIHNASICA--V 148
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
P+ +Y +K + + S L E+ K I+V I+PG+ T + +
Sbjct: 149 QPLWYEPIYNVTKAALMMFSKTLATEV--IKDNIRVNCINPGLILTPDWIKTAKELTKDN 206
Query: 182 TPTL------------------QSEDIADQVVYL 197
E++A+ V+L
Sbjct: 207 GGDWKGYLQSVADEHAPIKRFASPEELANFFVFL 240
Score = 51.4 bits (124), Expect = 9e-08
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 22/108 (20%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G II+ SI V P+ +Y +K + + S L E+ K I+V I+PG+ T
Sbjct: 137 GAIIHNASICA--VQPLWYEPIYNVTKAALMMFSKTLATEV--IKDNIRVNCINPGLILT 192
Query: 275 EIFKAANWPVHDPKTPTL------------------QSEDIADQVVYL 304
+ + E++A+ V+L
Sbjct: 193 PDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFL 240
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 106 bits (266), Expect = 3e-27
Identities = 42/210 (20%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNE---KEILDTFQWIKETFKGGVHVMI 59
VV ++R + ++ + +E + VDL + + L + G V +++
Sbjct: 34 VVAVSRTQADLDSLVREC----PGIEPVCVDLGDWEATERALGSV--------GPVDLLV 81
Query: 60 NNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGH 119
NNA + P E + +EVN+ A+ ++ A+ + A + G I+N++S
Sbjct: 82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQ 140
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD 179
R + H++Y ++K + +++ + EL +I+V +++P + T + +A D
Sbjct: 141 RAVT--NHSVYCSTKGALDMLTKVMALELG--PHKIRVNAVNPTVVMTSMGQAT---WSD 193
Query: 180 P--------KTPTL----QSEDIADQVVYL 197
P + P L + E + + +++L
Sbjct: 194 PHKAKTMLNRIP-LGKFAEVEHVVNAILFL 222
Score = 58.3 bits (142), Expect = 4e-10
Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N++S R + H++Y ++K + +++ + EL +I+V +++P + T
Sbjct: 129 GAIVNVSSQCSQRAVT--NHSVYCSTKGALDMLTKVMALELG--PHKIRVNAVNPTVVMT 184
Query: 275 EIFKAANWPVHDP--------KTPTL----QSEDIADQVVYL 304
+ +A DP + P L + E + + +++L
Sbjct: 185 SMGQAT---WSDPHKAKTMLNRIP-LGKFAEVEHVVNAILFL 222
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 106 bits (268), Expect = 3e-27
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 25/211 (11%)
Query: 3 VVGLARREENIQKMAKELEQY---PGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMI 59
V+ + R + + +ELE G + D+ NE E + G +H ++
Sbjct: 38 VMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH-GRLHGVV 96
Query: 60 NNAGLVGN-APLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISG 118
+ AG N P+T ++E WR ++NV + AA+ M G + I+SI+
Sbjct: 97 HCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGG--GGSFVGISSIAA 154
Query: 119 HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH 178
Y +K V + EL S ++V SI PG+ T++ A
Sbjct: 155 SNTHR--WFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSIRPGLIRTDLVAAI---TE 207
Query: 179 DPKTPTL-----------QSEDIADQVVYLL 198
+ + + ED+A+ ++LL
Sbjct: 208 SAELSSDYAMCTPLPRQGEVEDVANMAMFLL 238
Score = 57.2 bits (139), Expect = 1e-09
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G + I+SI+ Y +K V + EL S ++V SI PG+ T
Sbjct: 144 GSFVGISSIAASNTHR--WFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSIRPGLIRT 199
Query: 275 EIFKAANWPVHDPKTPTL-----------QSEDIADQVVYLL 305
++ A + + + ED+A+ ++LL
Sbjct: 200 DLVAAI---TESAELSSDYAMCTPLPRQGEVEDVANMAMFLL 238
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 106 bits (266), Expect = 3e-27
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 18/206 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV + E+ + ++ +EL ++ K D+ +K++ + + ET+ + V+ NNA
Sbjct: 34 VVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY-SRIDVLCNNA 92
Query: 63 GLVGN-APLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G++ P+ E W + VN+ + +R M G I+N SI+G R
Sbjct: 93 GIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG--KGVIVNTASIAGIRG 150
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
A Y +KHG+ ++ ++ ++ I+ ++ PG T I ++ P
Sbjct: 151 GF--AGAPYTVAKHGLIGLTRSIAAHYGDQG--IRAVAVLPGTVKTNIGLGSSKPSELGM 206
Query: 182 TPTL----------QSEDIADQVVYL 197
+ EDIA+ +V+L
Sbjct: 207 RTLTKLMSLSSRLAEPEDIANVIVFL 232
Score = 56.7 bits (138), Expect = 1e-09
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N SI+G R A Y +KHG+ ++ ++ ++ I+ ++ PG T
Sbjct: 137 GVIVNTASIAGIRGGF--AGAPYTVAKHGLIGLTRSIAAHYGDQG--IRAVAVLPGTVKT 192
Query: 275 EIFKAANWPVHDPKTPTL----------QSEDIADQVVYL 304
I ++ P + EDIA+ +V+L
Sbjct: 193 NIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFL 232
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 106 bits (266), Expect = 4e-27
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 14/205 (6%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV R +E +++ E+EQ+PG++ ++D+RN +I + I E F G + ++INNA
Sbjct: 33 VVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF-GRIDILINNA 91
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
P W ++ + + C++ + I G IIN+ +
Sbjct: 92 AGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGI-KGNIINMVATYAWDAG 150
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
P G AA+K GV ++ L E K I+V +I+PG W +
Sbjct: 151 P--GVIHSAAAKAGVLAMTKTLAVEWGRKYG-IRVNAIAPGPIERTGGADKLWISEEMAK 207
Query: 183 PTLQS---------EDIADQVVYLL 198
T+QS E+IA YL
Sbjct: 208 RTIQSVPLGRLGTPEEIAGLAYYLC 232
Score = 50.2 bits (121), Expect = 2e-07
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IIN+ + P G AA+K GV ++ L E K I+V +I+PG
Sbjct: 136 GNIINMVATYAWDAGP--GVIHSAAAKAGVLAMTKTLAVEWGRKYG-IRVNAIAPGPIER 192
Query: 275 EIFKAANWPVHDPKTPTLQS---------EDIADQVVYLL 305
W + T+QS E+IA YL
Sbjct: 193 TGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYYLC 232
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 106 bits (267), Expect = 4e-27
Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 21/211 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V L R ++++A E+ G+ A + D+ +E ++ + + + F G + +++ NA
Sbjct: 55 VGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF-GHLDIVVANA 113
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G+ G AP+ + +W VN+ + + G I+ ++SI+G R
Sbjct: 114 GINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG--GGAIVVVSSINGTRT 171
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
G Y A+K I L EL K I+V ++ PG T I +
Sbjct: 172 FTTPGATAYTATKAAQVAIVQQLALELG--KHHIRVNAVCPGAIETNISDNTKLRHEEET 229
Query: 182 TPTL---------------QSEDIADQVVYL 197
+ +SED+A+ + +L
Sbjct: 230 AIPVEWPKGQVPITDGQPGRSEDVAELIRFL 260
Score = 59.1 bits (144), Expect = 3e-10
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+ ++SI+G R G Y A+K I L EL K I+V ++ PG T
Sbjct: 158 GAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELG--KHHIRVNAVCPGAIET 215
Query: 275 EIFKAANWPVHDPKTPTL---------------QSEDIADQVVYL 304
I + + +SED+A+ + +L
Sbjct: 216 NISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFL 260
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 106 bits (266), Expect = 4e-27
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 13/206 (6%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ V A E + + + G+ A D+ N +I F + F G + ++NN
Sbjct: 53 VGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF-GRLDGLVNN 111
Query: 62 AGLVGN-APLTSGETEKWRNIYEVNVLALNICTREAAQSM-FANSIDNGYIININSISGH 119
AG+V + E+ + VNV +C EA + M S G I+N++S++
Sbjct: 112 AGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAI 171
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD 179
+ YAASK + + L RE+ + I+V ++ PG+ T++ + P
Sbjct: 172 LGSA-TQYVDYAASKAAIDTFTIGLAREVAAEG--IRVNAVRPGIIETDLHASGGLPDRA 228
Query: 180 PKTPTL-------QSEDIADQVVYLL 198
+ E++AD ++YLL
Sbjct: 229 REMAPSVPMQRAGMPEEVADAILYLL 254
Score = 56.4 bits (137), Expect = 2e-09
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 207 MFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTS 266
+ G I+N++S++ + YAASK + + L RE+ + I+V +
Sbjct: 152 SRLYSGQGGAIVNVSSMAAILGSA-TQYVDYAASKAAIDTFTIGLAREVAAEG--IRVNA 208
Query: 267 ISPGMTATEIFKAANWPVHDPKTPTL-------QSEDIADQVVYLL 305
+ PG+ T++ + P + E++AD ++YLL
Sbjct: 209 VRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADAILYLL 254
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 105 bits (264), Expect = 6e-27
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV + + E++Q G+ A + D+ +E+E+ + G V +++NNA
Sbjct: 38 VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNA 96
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G G P +R YE+NV + ++ A M N G I+ I S++
Sbjct: 97 GGGGPKPFDMPM-ADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAA--EN 151
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
YA+SK + + + +L + I+V I+PG T+ K+ P + +
Sbjct: 152 KNINMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIAPGAILTDALKSVITP--EIEQ 207
Query: 183 PTLQS---------EDIADQVVYL 197
LQ +DIA+ ++L
Sbjct: 208 KMLQHTPIRRLGQPQDIANAALFL 231
Score = 52.9 bits (128), Expect = 3e-08
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+ I S++ YA+SK + + + +L + I+V I+PG T
Sbjct: 139 GVILTITSMAA--ENKNINMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIAPGAILT 194
Query: 275 EIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
+ K+ P + + LQ +DIA+ ++L
Sbjct: 195 DALKSVITP--EIEQKMLQHTPIRRLGQPQDIANAALFL 231
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 105 bits (264), Expect = 7e-27
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+V+ E E+E+ A K DL N E+ + F G +H +++
Sbjct: 35 VVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF-GEIHGLVHV 93
Query: 62 AGLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
AG + + + W + +VN+ +L + + A M G I+ +S +G R
Sbjct: 94 AGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKM----AKGGAIVTFSSQAG-R 148
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH-- 178
G YA SK V + L +E+ +I+V ++ PGM +T P
Sbjct: 149 DGGGPGALAYATSKGAVMTFTRGLAKEVG---PKIRVNAVCPGMISTTFHDTFTKPEVRE 205
Query: 179 --DPKTPTL----QSEDIADQVVYL 197
T L SED+A V +L
Sbjct: 206 RVAGATS-LKREGSSEDVAGLVAFL 229
Score = 57.9 bits (141), Expect = 5e-10
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 28/128 (21%)
Query: 200 TPAHVQSMFANNI---------------DNGYIININSISGHRVLPIDGHAMYAASKHGV 244
A + N+ G I+ +S +G R G YA SK V
Sbjct: 107 DEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG-RDGGGPGALAYATSKGAV 165
Query: 245 TVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH----DPKTPTL----QSED 296
+ L +E+ +I+V ++ PGM +T P T L SED
Sbjct: 166 MTFTRGLAKEVG---PKIRVNAVCPGMISTTFHDTFTKPEVRERVAGATS-LKREGSSED 221
Query: 297 IADQVVYL 304
+A V +L
Sbjct: 222 VAGLVAFL 229
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 105 bits (264), Expect = 8e-27
Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 23/209 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V +R ++ + + K+ A DL + E + + F G +++++NNA
Sbjct: 36 VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNA 95
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+V E + I +N A + A + A+ G ++ I+S+SG L
Sbjct: 96 GIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSG--AL 151
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
+ A+Y A+K + ++ L E I+V + PG+ AT + + + DP+
Sbjct: 152 AVPYEAVYGATKGAMDQLTRCLAFEWAKDN--IRVNGVGPGVIATSLVEMT---IQDPEQ 206
Query: 183 PTLQS--------------EDIADQVVYL 197
+ +++A V +L
Sbjct: 207 KENLNKLIDRCALRRMGEPKELAAMVAFL 235
Score = 46.7 bits (112), Expect = 3e-06
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 21/105 (20%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
G ++ I+S+SG L + A+Y A+K + ++ L E I+V + PG+ A
Sbjct: 138 RGNVVFISSVSG--ALAVPYEAVYGATKGAMDQLTRCLAFEWAKDN--IRVNGVGPGVIA 193
Query: 274 TEIFKAANWPVHDPKTPTLQS--------------EDIADQVVYL 304
T + + + DP+ + +++A V +L
Sbjct: 194 TSLVEMT---IQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFL 235
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 105 bits (264), Expect = 1e-26
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 19/208 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV AR + ++ E+ G+ A D+ +E + F GG+ NNA
Sbjct: 35 VVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF-GGLDTAFNNA 93
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G +G ++S E WR + N+ + + + ++ A G + +S GH
Sbjct: 94 GALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG--GGSLTFTSSFVGHTA 151
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
G A YAASK G+ + AL EL I+V ++ PG T T AN P P+
Sbjct: 152 -GFAGVAPYAASKAGLIGLVQALAVELG--ARGIRVNALLPGGTDTPAN-FANLPGAAPE 207
Query: 182 TPTL-----------QSEDIADQVVYLL 198
T + E+IA+ +YL
Sbjct: 208 TRGFVEGLHALKRIARPEEIAEAALYLA 235
Score = 56.0 bits (136), Expect = 3e-09
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G + +S GH G A YAASK G+ + AL EL I+V ++ PG T T
Sbjct: 138 GSLTFTSSFVGHTA-GFAGVAPYAASKAGLIGLVQALAVELG--ARGIRVNALLPGGTDT 194
Query: 275 EIFKAANWPVHDPKTPTL-----------QSEDIADQVVYLL 305
AN P P+T + E+IA+ +YL
Sbjct: 195 PAN-FANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLA 235
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 104 bits (261), Expect = 2e-26
Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 21/208 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV + R + +++A E+ A D+ E ++ + F G V +++NNA
Sbjct: 36 VVIVDRDKAGAERVAGEI---GDAALAVAADISKEADVDAAVEAALSKF-GKVDILVNNA 91
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANS--IDNGYIININSISGH 119
G+ E E++ I VNV + + T + N I+N+ S
Sbjct: 92 GIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAG 151
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD 179
R P A Y A+K V ++ AL EL ++I+V +++P T + +
Sbjct: 152 RPRP--NLAWYNATKGWVVSVTKALAIELA--PAKIRVVALNPVAGETPLLTTFMGEDSE 207
Query: 180 PKTPTLQS----------EDIADQVVYL 197
+ +D+A+ +L
Sbjct: 208 EIRKKFRDSIPMGRLLKPDDLAEAAAFL 235
Score = 57.5 bits (140), Expect = 9e-10
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
I+N+ S R P A Y A+K V ++ AL EL ++I+V +++P
Sbjct: 139 ECVILNVASTGAGRPRP--NLAWYNATKGWVVSVTKALAIELA--PAKIRVVALNPVAGE 194
Query: 274 TEIFKAANWPVHDPKTPTLQS----------EDIADQVVYL 304
T + + + +D+A+ +L
Sbjct: 195 TPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFL 235
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 102 bits (258), Expect = 5e-26
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 6/167 (3%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ R + + L + H D+ +E I F + V ++INNA
Sbjct: 36 VILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG-IHVDILINNA 94
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ P+ E E W+ + + N+ + + +R AA+ M A + G IINI S++
Sbjct: 95 GIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARN-SGGKIINIGSLTSQAAR 153
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEI 169
P A Y A+K G+ +++ ++ E I+ +I PG T++
Sbjct: 154 P--TVAPYTAAKGGIKMLTCSMAAEWAQFN--IQTNAIGPGYILTDM 196
Score = 44.0 bits (105), Expect = 3e-05
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI S++ P A Y A+K G+ +++ ++ E I+ +I PG T
Sbjct: 139 GKIINIGSLTSQAARP--TVAPYTAAKGGIKMLTCSMAAEWAQFN--IQTNAIGPGYILT 194
Query: 275 EI 276
++
Sbjct: 195 DM 196
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 102 bits (258), Expect = 5e-26
Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 26/208 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ R E NI ++ +E ++HA + D+ + EI +T G + ++ NA
Sbjct: 35 VLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTL-GAIDLLHINA 90
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ P + + VN + + + G I+ +S++
Sbjct: 91 GVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLI----REGGSIVFTSSVADEGGH 146
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP-- 180
P G ++Y+ASK + + L EL I+V S+SPG T A +
Sbjct: 147 P--GMSVYSASKAALVSFASVLAAEL--LPRGIRVNSVSPGFIDTPTKGVAGITEAERAE 202
Query: 181 -------KTPTL----QSEDIADQVVYL 197
TP + ++++A V++L
Sbjct: 203 FKTLGDNITP-MKRNGTADEVARAVLFL 229
Score = 62.6 bits (153), Expect = 1e-11
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
+ G I+ +S++ P G ++Y+ASK + + L EL I+V S+SPG
Sbjct: 130 EGGSIVFTSSVADEGGHP--GMSVYSASKAALVSFASVLAAEL--LPRGIRVNSVSPGFI 185
Query: 273 ATEIFKAANWPVHDP---------KTPTL----QSEDIADQVVYL 304
T A + TP + ++++A V++L
Sbjct: 186 DTPTKGVAGITEAERAEFKTLGDNITP-MKRNGTADEVARAVLFL 229
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 103 bits (258), Expect = 6e-26
Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 25/208 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV + E + + +EL D+ E ++ F G + ++NNA
Sbjct: 36 VVICDKDESGGRALEQEL----PGAVFILCDVTQEDDVKTLVSETIRRF-GRLDCVVNNA 90
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G + +R + E+N+L T+ A + + G +INI+S+ G
Sbjct: 91 GHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ---GNVINISSLVGAIG 147
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
Y A+K VT ++ AL + ++V ISPG T +++ + DP+
Sbjct: 148 QA--QAVPYVATKGAVTAMTKALALDES--PYGVRVNCISPGNIWTPLWEELAALMPDPR 203
Query: 182 TPTL------------QSEDIADQVVYL 197
Q ++ V+L
Sbjct: 204 ASIREGMLAQPLGRMGQPAEVGAAAVFL 231
Score = 56.8 bits (138), Expect = 2e-09
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G +INI+S+ G Y A+K VT ++ AL + ++V ISPG T
Sbjct: 134 GNVINISSLVGAIGQA--QAVPYVATKGAVTAMTKALALDES--PYGVRVNCISPGNIWT 189
Query: 275 EIFKAANWPVHDPKTPTL------------QSEDIADQVVYL 304
+++ + DP+ Q ++ V+L
Sbjct: 190 PLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFL 231
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 102 bits (257), Expect = 7e-26
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 19/204 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV + E + +A + Q GK + ++ +E+ + + F G + V++NNA
Sbjct: 39 VVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF-GKITVLVNNA 97
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G G P + +++N+ +L ++ AA M G I+NI+S++G
Sbjct: 98 GGGGPKPFDMPM-SDFEWAFKLNLFSLFRLSQLAAPHMQKA--GGGAILNISSMAGENTN 154
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
A Y +SK V ++ + ++ I+V +I+PG T+ P + +
Sbjct: 155 V--RMASYGSSKAAVNHLTRNIAFDVGPMG--IRVNAIAPGAIKTDALATVLTP--EIER 208
Query: 183 PTLQS---------EDIADQVVYL 197
L+ +DIA+ ++L
Sbjct: 209 AMLKHTPLGRLGEAQDIANAALFL 232
Score = 51.0 bits (123), Expect = 1e-07
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+NI+S++G A Y +SK V ++ + ++ I+V +I+PG T
Sbjct: 140 GAILNISSMAGENTNV--RMASYGSSKAAVNHLTRNIAFDVGPMG--IRVNAIAPGAIKT 195
Query: 275 EIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
+ P + + L+ +DIA+ ++L
Sbjct: 196 DALATVLTP--EIERAMLKHTPLGRLGEAQDIANAALFL 232
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 103 bits (258), Expect = 8e-26
Identities = 41/252 (16%), Positives = 88/252 (34%), Gaps = 51/252 (20%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V L + E ++++ G D+R+ ++ + F G + +I NA
Sbjct: 32 VAVLDKSAERLRELEVAH---GGNAVGVVGDVRSLQDQKRAAERCLAAF-GKIDTLIPNA 87
Query: 63 GLVG-NAPLTSGETEK----WRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSIS 117
G+ + L +K + +I+ VNV + ++ ++ G ++ S +
Sbjct: 88 GIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR---GSVVFTISNA 144
Query: 118 GHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPV 177
G G +Y A+KH V + + EL ++V ++PG T++ ++ +
Sbjct: 145 GFYPNG--GGPLYTATKHAVVGLVRQMAFEL---APHVRVNGVAPGGMNTDLRGPSSLGL 199
Query: 178 HDPKTPTL----------------QSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININ 221
+ ++ E+ V+ A D+
Sbjct: 200 SEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFF-----------ATRGDSLP----- 243
Query: 222 SISGHRVLPIDG 233
+G +L DG
Sbjct: 244 -ATGA-LLNYDG 253
Score = 60.3 bits (147), Expect = 1e-10
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 21/106 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ S +G G +Y A+KH V + + EL ++V ++PG T
Sbjct: 135 GSVVFTISNAGFYPNG--GGPLYTATKHAVVGLVRQMAFEL---APHVRVNGVAPGGMNT 189
Query: 275 EIFKAANWPVHDPKTPTL----------------QSEDIADQVVYL 304
++ ++ + + ++ E+ V+
Sbjct: 190 DLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFF 235
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 102 bits (256), Expect = 8e-26
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 22/206 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
++ + R + + A+EL D+ + + + + V +++N+A
Sbjct: 38 LILIDREAAALDRAAQELGA--AVAARIVADVTDAEAMTAAAAEAEAV--APVSILVNSA 93
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + WR + VNV + +R ++M A G I+N+ S+SG V
Sbjct: 94 GIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG--AGAIVNLGSMSGTIVN 151
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK- 181
+ Y ASK V ++ AL E + ++V +++PG ATE+ P+
Sbjct: 152 RPQFASSYMASKGAVHQLTRALAAEWAGRG--VRVNALAPGYVATEMTLKM---RERPEL 206
Query: 182 -------TPTL---QSEDIADQVVYL 197
TP + +IA ++L
Sbjct: 207 FETWLDMTPMGRCGEPSEIAAAALFL 232
Score = 52.5 bits (127), Expect = 4e-08
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N+ S+SG V + Y ASK V ++ AL E + ++V +++PG AT
Sbjct: 137 GAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRG--VRVNALAPGYVAT 194
Query: 275 EIFKAANWPVHDPK--------TPTL---QSEDIADQVVYL 304
E+ P+ TP + +IA ++L
Sbjct: 195 EMTLKM---RERPELFETWLDMTPMGRCGEPSEIAAAALFL 232
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 101 bits (255), Expect = 9e-26
Identities = 26/201 (12%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+ + RE P H+ + E+EI + I V + A
Sbjct: 49 TISIDFREN------------PNADHSFTIKDSGEEEIKSVIEKINSKS-IKVDTFVCAA 95
Query: 63 G-LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G G + + + + ++N+ + A+ + G + + +
Sbjct: 96 GGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLL----NQGGLFVLTGASAALNR 151
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
G Y A+K I L E + I P T + +
Sbjct: 152 TS--GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRK--YMSDANF 207
Query: 182 TPTLQSEDIADQVVYLLKTPA 202
++A+++
Sbjct: 208 DDWTPLSEVAEKLFEWSTNSD 228
Score = 60.0 bits (146), Expect = 1e-10
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 4/96 (4%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
G + + + G Y A+K I L E + I P
Sbjct: 137 GGLFVLTGASAALNRTS--GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLD 194
Query: 274 TEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPA 309
T + + ++A+++
Sbjct: 195 TPTNRK--YMSDANFDDWTPLSEVAEKLFEWSTNSD 228
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 102 bits (257), Expect = 1e-25
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 20/208 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV +++ QK+ + P + D+ ++++ + G + +M N
Sbjct: 43 VVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAKH-GKLDIMFGNV 100
Query: 63 GLVGNAPLTSGET--EKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
G++ P + E E ++ + ++NV + + AA+ M G I+ SIS
Sbjct: 101 GVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA--KKGSIVFTASISSFT 158
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIF---------- 170
H Y A+KH V ++ +L EL + I+V +SP + A+ +
Sbjct: 159 AGEGVSHV-YTATKHAVLGLTTSLCTELG--EYGIRVNCVSPYIVASPLLTDVFGVDSSR 215
Query: 171 -KAANWPVHDPKTPTLQSEDIADQVVYL 197
+ + K L++ED+AD V YL
Sbjct: 216 VEELAHQAANLKGTLLRAEDVADAVAYL 243
Score = 59.1 bits (144), Expect = 3e-10
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 14/101 (13%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+ SIS H Y A+KH V ++ +L EL + I+V +SP + A+
Sbjct: 146 GSIVFTASISSFTAGEGVSHV-YTATKHAVLGLTTSLCTELG--EYGIRVNCVSPYIVAS 202
Query: 275 EIF-----------KAANWPVHDPKTPTLQSEDIADQVVYL 304
+ + + K L++ED+AD V YL
Sbjct: 203 PLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYL 243
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 102 bits (256), Expect = 1e-25
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 18/205 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV +R++EN+ + L+ + + ++ GGV ++++NA
Sbjct: 41 VVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH-GGVDILVSNA 99
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
+ + E W I VNV A + T+ M G ++ ++S+
Sbjct: 100 AVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG--GGSVLIVSSVGA--Y 155
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
P Y SK + ++ L EL + I+V ++PG+ T F W K
Sbjct: 156 HPFPNLGPYNVSKTALLGLTKNLAVELAPRN--IRVNCLAPGLIKTN-FSQVLWMDKARK 212
Query: 182 TPTLQS---------EDIADQVVYL 197
+S ED A V +L
Sbjct: 213 EYMKESLRIRRLGNPEDCAGIVSFL 237
Score = 52.9 bits (128), Expect = 3e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ ++S+ P Y SK + ++ L EL + I+V ++PG+ T
Sbjct: 144 GSVLIVSSVGA--YHPFPNLGPYNVSKTALLGLTKNLAVELAPRN--IRVNCLAPGLIKT 199
Query: 275 EIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
F W K +S ED A V +L
Sbjct: 200 N-FSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFL 237
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 102 bits (256), Expect = 1e-25
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 23/213 (10%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V L ++EE + K +E K +D+ ++ E GG V++NN
Sbjct: 30 AVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL-GGFDVLVNN 88
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ PL E + IY VNV ++ + A++ G IIN SI+ +
Sbjct: 89 AGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELG-VKGKIINAASIAAIQG 147
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATE--------IFKAA 173
P + Y+ +K V ++ A +EL K V + +PG+ T + K
Sbjct: 148 FP--ILSAYSTTKFAVRGLTQAAAQELAPKG--HTVNAYAPGIVGTGMWEQIDAELSKIN 203
Query: 174 NWPVHDPKTPTLQS---------EDIADQVVYL 197
P+ + S ED+A V +L
Sbjct: 204 GKPIGENFKEYSSSIALGRPSVPEDVAGLVSFL 236
Score = 48.7 bits (117), Expect = 6e-07
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 21/107 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IIN SI+ + P + Y+ +K V ++ A +EL K V + +PG+ T
Sbjct: 134 GKIINAASIAAIQGFP--ILSAYSTTKFAVRGLTQAAAQELAPKG--HTVNAYAPGIVGT 189
Query: 275 E--------IFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
+ K P+ + S ED+A V +L
Sbjct: 190 GMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFL 236
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 102 bits (257), Expect = 1e-25
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ + E Q + E+EQ G+ A + D R+ + I + E GG+ +++N+
Sbjct: 58 VALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL-GGLDILVNS 116
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ +APL + + VN A + R A++ + D G II I S V
Sbjct: 117 AGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHL----GDGGRIITIGSNLAELV 172
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
P G ++Y+ASK + ++ L R+L + I V + PG T T++ A+ + +
Sbjct: 173 -PWPGISLYSASKAALAGLTKGLARDLGPRG--ITVNIVHPGSTDTDMN-PADGDHAEAQ 228
Query: 182 TPTL------QSEDIADQVVYL 197
+ + +DIA V +L
Sbjct: 229 RERIATGSYGEPQDIAGLVAWL 250
Score = 56.8 bits (138), Expect = 1e-09
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
D G II I S V P G ++Y+ASK + ++ L R+L + I V + PG T
Sbjct: 157 DGGRIITIGSNLAELV-PWPGISLYSASKAALAGLTKGLARDLGPRG--ITVNIVHPGST 213
Query: 273 ATEIFKAANWPVHDPKTPTL------QSEDIADQVVYL 304
T++ A+ + + + + +DIA V +L
Sbjct: 214 DTDMN-PADGDHAEAQRERIATGSYGEPQDIAGLVAWL 250
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 102 bits (257), Expect = 1e-25
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 24/208 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV E+ ++A E+ K +VD+ + K+ + + G V V++NNA
Sbjct: 54 VVVADVNEDAAVRVANEI---GSKAFGVRVDVSSAKDAESMVEKTTAKW-GRVDVLVNNA 109
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G + + E W I VNV + +C++ M N G IIN S + +
Sbjct: 110 GFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG--GGSIINTTSYTATSAI 167
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP-- 180
Y ASK ++ ++ A+ + K I+V +++PG + F DP
Sbjct: 168 A--DRTAYVASKGAISSLTRAMAMDHA--KEGIRVNAVAPGTIDSPYFTKIFAEAKDPAK 223
Query: 181 -------KTPTL----QSEDIADQVVYL 197
+ + +E+IA+ +++L
Sbjct: 224 LRSDFNARAV-MDRMGTAEEIAEAMLFL 250
Score = 55.2 bits (134), Expect = 5e-09
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IIN S + + Y ASK ++ ++ A+ + K I+V +++PG +
Sbjct: 153 GSIINTTSYTATSAIA--DRTAYVASKGAISSLTRAMAMDHA--KEGIRVNAVAPGTIDS 208
Query: 275 EIFKAANWPVHDP---------KTPTL----QSEDIADQVVYL 304
F DP + + +E+IA+ +++L
Sbjct: 209 PYFTKIFAEAKDPAKLRSDFNARAV-MDRMGTAEEIAEAMLFL 250
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 103 bits (258), Expect = 1e-25
Identities = 38/206 (18%), Positives = 81/206 (39%), Gaps = 16/206 (7%)
Query: 3 VVGLARREENIQKMAKELE-QYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V +R+ + ++ A+++ Q K+HA + D+R+ + +T + + G +++INN
Sbjct: 53 CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA-GHPNIVINN 111
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
A +P W+ I ++ + T E + + ++I +I
Sbjct: 112 AAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQ-KGAAFLSITTIYAETG 170
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
A++K GV +S +L E K ++ I PG T+ + P +
Sbjct: 171 SG--FVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVIQPGPIKTKGAFSRLDPTGTFE 226
Query: 182 TPTLQS---------EDIADQVVYLL 198
+ E++A+ +L
Sbjct: 227 KEMIGRIPCGRLGTVEELANLAAFLC 252
Score = 48.4 bits (116), Expect = 1e-06
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
++I +I A++K GV +S +L E K ++ I PG T
Sbjct: 157 AAFLSITTIYAETGSG--FVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVIQPGPIKT 212
Query: 275 EIFKAANWPVHDPKTPTLQS---------EDIADQVVYLL 305
+ + P + + E++A+ +L
Sbjct: 213 KGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLC 252
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 101 bits (255), Expect = 1e-25
Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 30/218 (13%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+ L E ++K + + + + D+ +E+ ++ T + F G + + NNA
Sbjct: 34 IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF-GKIDFLFNNA 92
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G G AP+ ++ + + +NV + ++ M + G I+N S++G +
Sbjct: 93 GYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ--NYGRIVNTASMAGVKG 150
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
P A Y SK + +++ +L I+V +ISPG +
Sbjct: 151 PP--NMAAYGTSKGAIIALTETAALDLAPYN--IRVNAISPGYMGPGFMWERQVELQAKV 206
Query: 182 TPTL----------------------QSEDIADQVVYL 197
+I V +L
Sbjct: 207 GSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFL 244
Score = 51.4 bits (124), Expect = 1e-07
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 26/112 (23%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N S++G + P A Y SK + +++ +L I+V +ISPG
Sbjct: 137 GRIVNTASMAGVKGPP--NMAAYGTSKGAIIALTETAALDLAPYN--IRVNAISPGYMGP 192
Query: 275 EIFKAANWPVHDPKTPTL----------------------QSEDIADQVVYL 304
+ +I V +L
Sbjct: 193 GFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFL 244
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 101 bits (255), Expect = 1e-25
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 26/212 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V E ++ A E+ +A ++D+ + I E GG+ +++NNA
Sbjct: 35 VAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDSIDAAIAATVEHA-GGLDILVNNA 90
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
L AP+ E + ++ +NV + AA+ M A G IIN+ S +G R
Sbjct: 91 ALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQG-RGGKIINMASQAGRR-- 147
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
A+Y A+K V ++ + +L+ K RI V +I+PG+ E + + +
Sbjct: 148 GEALVAIYCATKAAVISLTQSAGLDLI--KHRINVNAIAPGVVDGEHWDGVDALFARYEN 205
Query: 183 PTL-----------------QSEDIADQVVYL 197
+ED+ ++L
Sbjct: 206 RPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFL 237
Score = 53.7 bits (130), Expect = 1e-08
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IIN+ S +G R A+Y A+K V ++ + +L+ K RI V +I+PG+
Sbjct: 135 GKIINMASQAGRR--GEALVAIYCATKAAVISLTQSAGLDLI--KHRINVNAIAPGVVDG 190
Query: 275 EIFKAANWPVHDPKTPTL-----------------QSEDIADQVVYL 304
E + + + +ED+ ++L
Sbjct: 191 EHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFL 237
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 101 bits (254), Expect = 3e-25
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 21/208 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V AR E A L Y G A DL +E Q + E + +++NNA
Sbjct: 56 VFICARDAEACADTATRLSAY-GDCQAIPADLSSEAGARRLAQALGELS-ARLDILVNNA 113
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGY--IININSISGHR 120
G A L S W + ++NV ++ C ++ + ++ +INI S++G
Sbjct: 114 GTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS 173
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP 180
+ +A Y SK + +S L +ELV + I V I+PG + + + +DP
Sbjct: 174 AMGEQAYA-YGPSKAALHQLSRMLAKELVGE--HINVNVIAPGRFPSRMTRHI---ANDP 227
Query: 181 K--------TPTL---QSEDIADQVVYL 197
+ P + E++A + L
Sbjct: 228 QALEADSASIPMGRWGRPEEMAALAISL 255
Score = 49.9 bits (120), Expect = 3e-07
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
+ +INI S++G + +A Y SK + +S L +ELV + I V I+PG
Sbjct: 159 NPARVINIGSVAGISAMGEQAYA-YGPSKAALHQLSRMLAKELVGE--HINVNVIAPGRF 215
Query: 273 ATEIFKAANWPVHDPK--------TPTL---QSEDIADQVVYL 304
+ + + +DP+ P + E++A + L
Sbjct: 216 PSRMTRHI---ANDPQALEADSASIPMGRWGRPEEMAALAISL 255
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 101 bits (253), Expect = 3e-25
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 23/212 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V + + +A E+ Q G A KVD+ + ++ + ++T GG V++NNA
Sbjct: 29 VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL-GGFDVIVNNA 87
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + P+ S E +Y +NV + + A ++ G IIN S +GH
Sbjct: 88 GVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEG-HGGKIINACSQAGHVGN 146
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATE--------IFKAAN 174
P A+Y++SK V ++ R+L I V PG+ T + +AA
Sbjct: 147 P--ELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGYCPGIVKTPMWAEIDRQVSEAAG 202
Query: 175 WPVHDPKTPTLQS---------EDIADQVVYL 197
P+ + ED+A V YL
Sbjct: 203 KPLGYGTAEFAKRITLGRLSEPEDVAACVSYL 234
Score = 49.1 bits (118), Expect = 6e-07
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 21/107 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IIN S +GH P A+Y++SK V ++ R+L I V PG+ T
Sbjct: 132 GKIINACSQAGHVGNP--ELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGYCPGIVKT 187
Query: 275 E--------IFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
+ +AA P+ + ED+A V YL
Sbjct: 188 PMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYL 234
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 100 bits (252), Expect = 4e-25
Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 26/212 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V Q + LE A +VD+ + Q + GG ++ NA
Sbjct: 39 VAIADLDVMAAQAVVAGLE---NGGFAVEVDVTKRASVDAAMQKAIDAL-GGFDLLCANA 94
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ P E+W ++VN + + + A + A++ G I+N S++
Sbjct: 95 GVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASN-TKGVIVNTASLAAKVGA 153
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
P A Y+ASK V + AL RE+ K I+V + PG T + + + +
Sbjct: 154 P--LLAHYSASKFAVFGWTQALAREMAPKN--IRVNCVCPGFVKTAMQEREIIWEAELRG 209
Query: 183 PTL-----------------QSEDIADQVVYL 197
T + ED+AD VV+L
Sbjct: 210 MTPEAVRAEYVSLTPLGRIEEPEDVADVVVFL 241
Score = 51.0 bits (123), Expect = 1e-07
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N S++ P A Y+ASK V + AL RE+ K I+V + PG T
Sbjct: 139 GVIVNTASLAAKVGAP--LLAHYSASKFAVFGWTQALAREMAPKN--IRVNCVCPGFVKT 194
Query: 275 EIFKAANWPVHDPKTPTL-----------------QSEDIADQVVYL 304
+ + + + T + ED+AD VV+L
Sbjct: 195 AMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFL 241
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 101 bits (254), Expect = 5e-25
Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 14/195 (7%)
Query: 3 VVGLARREENIQKM---AKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMI 59
V R + ++ A+ L PG L ++D+R+ K + + + E G V V++
Sbjct: 32 VYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE---GRVDVLV 88
Query: 60 NNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGH 119
NAGL PL + + ++ +VNV+ + M +G ++ S+ G
Sbjct: 89 CNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGL 146
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD 179
LP + +Y ASK + + ++L L + ++ I G T
Sbjct: 147 MGLP--FNDVYCASKFALEGLCESLAVLL--LPFGVHLSLIECGPVHTAF--MEKVLGSP 200
Query: 180 PKTPTLQSEDIADQV 194
+ +
Sbjct: 201 EEVLDRTDIHTFHRF 215
Score = 62.8 bits (153), Expect = 2e-11
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ S+ G LP + +Y ASK + + ++L L + ++ I G T
Sbjct: 135 GRVLVTGSVGGLMGLP--FNDVYCASKFALEGLCESLAVLL--LPFGVHLSLIECGPVHT 190
Query: 275 EIFKAANWPVHDPKTPTLQSEDIADQV 301
+ +
Sbjct: 191 AF--MEKVLGSPEEVLDRTDIHTFHRF 215
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 100 bits (252), Expect = 5e-25
Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 23/208 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ + A ++ A +VD+ +E++I+ F GGV ++ NA
Sbjct: 56 VLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAAF-GGVDKLVANA 111
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+V A L E + + +N+ +CT+ AA M G I+N++S++G +
Sbjct: 112 GVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER--GGGAIVNLSSLAGQVAV 169
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
G Y SK G+ +S EL S I+ ++ P T + + A
Sbjct: 170 G--GTGAYGMSKAGIIQLSRITAAELR--SSGIRSNTLLPAFVDTPMQQTAMAMFDGALG 225
Query: 183 PTLQS-------------EDIADQVVYL 197
E++A VV+L
Sbjct: 226 AGGARSMIARLQGRMAAPEEMAGIVVFL 253
Score = 54.1 bits (131), Expect = 1e-08
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N++S++G + G Y SK G+ +S EL S I+ ++ P T
Sbjct: 155 GAIVNLSSLAGQVAVG--GTGAYGMSKAGIIQLSRITAAELR--SSGIRSNTLLPAFVDT 210
Query: 275 EIFKAANWPVHDPKTPTLQS-------------EDIADQVVYL 304
+ + A E++A VV+L
Sbjct: 211 PMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFL 253
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 99.5 bits (249), Expect = 8e-25
Identities = 42/213 (19%), Positives = 82/213 (38%), Gaps = 27/213 (12%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFK-----GGVH 56
+ + R+E ++ E++ G + +L + + + + +
Sbjct: 34 VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFD 93
Query: 57 VMINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSI 116
++INNAG+ A + + + + VN A ++A + DN IINI+S
Sbjct: 94 ILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRL----RDNSRIINISSA 149
Query: 117 SGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWP 176
+ LP Y+ +K + ++ L ++L + I V +I PG T++
Sbjct: 150 ATRISLP--DFIAYSMTKGAINTMTFTLAKQLGARG--ITVNAILPGFVKTDMNAEL--- 202
Query: 177 VHDPKTPTL-----------QSEDIADQVVYLL 198
+ DP + EDIAD +L
Sbjct: 203 LSDPMMKQYATTISAFNRLGEVEDIADTAAFLA 235
Score = 59.9 bits (146), Expect = 1e-10
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
DN IINI+S + LP Y+ +K + ++ L ++L + I V +I PG
Sbjct: 139 DNSRIINISSAATRISLP--DFIAYSMTKGAINTMTFTLAKQLGARG--ITVNAILPGFV 194
Query: 273 ATEIFKAANWPVHDPKTPTL-----------QSEDIADQVVYLL 305
T++ + DP + EDIAD +L
Sbjct: 195 KTDMNAEL---LSDPMMKQYATTISAFNRLGEVEDIADTAAFLA 235
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 99.1 bits (248), Expect = 2e-24
Identities = 38/203 (18%), Positives = 84/203 (41%), Gaps = 15/203 (7%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+ AR E + + + ++ ++ D E Q + F G + ++INN
Sbjct: 41 IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNL 100
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G + + P E + N+ + ++ A + A+ G II ++SI+G
Sbjct: 101 GAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVVSA 158
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKA-ANWPVHDP- 180
++Y+A+K + ++ L E + I+ +++P + AT + +A +
Sbjct: 159 S--VGSIYSATKGALNQLARNLACEWASDG--IRANAVAPAVIATPLAEAVYDDEFKKVV 214
Query: 181 --KTPTL----QSEDIADQVVYL 197
+ P L + E+++ V +L
Sbjct: 215 ISRKP-LGRFGEPEEVSSLVAFL 236
Score = 47.1 bits (113), Expect = 2e-06
Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
G II ++SI+G ++Y+A+K + ++ L E + I+ +++P + A
Sbjct: 143 CGNIIFMSSIAGVVSAS--VGSIYSATKGALNQLARNLACEWASDG--IRANAVAPAVIA 198
Query: 274 TEIFKA-ANWPVHDP---KTPTL----QSEDIADQVVYL 304
T + +A + + P L + E+++ V +L
Sbjct: 199 TPLAEAVYDDEFKKVVISRKP-LGRFGEPEEVSSLVAFL 236
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 98.8 bits (247), Expect = 2e-24
Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 36/216 (16%)
Query: 3 VVGLARREENIQKMAKELEQ--YPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
V + E + L + P K + D+ +++++ DTF+ + + F G + +++N
Sbjct: 34 VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF-GRLDILVN 92
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFAN-SIDNGYIININSISGH 119
NAG+ + W ++N++++ T M + G IIN++S++G
Sbjct: 93 NAGV--------NNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG- 143
Query: 120 RVLPIDGHAMYAASKHGVTVI----SDALRRELVNKKSRIKVTSISPGMTATEIFKAANW 175
++P+ +Y ASKHG ++ S AL L+N +++ +I PG T I ++
Sbjct: 144 -LMPVAQQPVYCASKHG--IVGFTRSAALAANLMNSG--VRLNAICPGFVNTAILESIEK 198
Query: 176 PVHDPKTPTL--------------QSEDIADQVVYL 197
+ + IA+ ++ L
Sbjct: 199 EENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITL 234
Score = 57.6 bits (140), Expect = 8e-10
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 24/108 (22%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVI----SDALRRELVNKKSRIKVTSISPG 270
G IIN++S++G ++P+ +Y ASKHG ++ S AL L+N +++ +I PG
Sbjct: 133 GIIINMSSLAG--LMPVAQQPVYCASKHG--IVGFTRSAALAANLMNSG--VRLNAICPG 186
Query: 271 MTATEIFKAANWPVHDPKTPTL--------------QSEDIADQVVYL 304
T I ++ + + IA+ ++ L
Sbjct: 187 FVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITL 234
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 98.4 bits (246), Expect = 3e-24
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 34/218 (15%)
Query: 3 VVGLARREENIQKMAKELEQYPGK--LHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
V+ RREEN+ + KE+ L DL E+ D E + V ++IN
Sbjct: 37 VLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVI----EKY-PKVDILIN 91
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
N G+ E W ++EVN+++ TR + M G +I I S +
Sbjct: 92 NLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER--KEGRVIFIASEAA-- 147
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATE--------IFKA 172
++P A Y+A+K +S +L + + V +I PG T TE ++
Sbjct: 148 IMPSQEMAHYSATKTMQLSLSRSLAELT--TGTNVTVNTIMPGSTLTEGVETMLNSLYPN 205
Query: 173 ANWPVHDPKTPTLQS-------------EDIADQVVYL 197
+ + + ++ E+IA V +L
Sbjct: 206 EQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFL 243
Score = 53.0 bits (128), Expect = 2e-08
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 25/111 (22%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G +I I S + ++P A Y+A+K +S +L + + V +I PG T T
Sbjct: 137 GRVIFIASEAA--IMPSQEMAHYSATKTMQLSLSRSLAELT--TGTNVTVNTIMPGSTLT 192
Query: 275 E--------IFKAANWPVHDPKTPTLQS-------------EDIADQVVYL 304
E ++ + + + ++ E+IA V +L
Sbjct: 193 EGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFL 243
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 99.4 bits (248), Expect = 4e-24
Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 11/195 (5%)
Query: 2 IVVGLARR-----EENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVH 56
V R N++ +A L ++D++++ + I G +
Sbjct: 31 RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGED-GRID 89
Query: 57 VMINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSI 116
V+I+NAG + P + E++ +Y++NVL+ R A M +G +I I+S
Sbjct: 90 VLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK--HGLLIWISSS 147
Query: 117 SGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWP 176
S A Y A+K + I+ REL + I+ + I PG + A+
Sbjct: 148 SS-AGGTPPYLAPYFAAKAAMDAIAVQYAREL--SRWGIETSIIVPGAFTSGTNHFAHSG 204
Query: 177 VHDPKTPTLQSEDIA 191
V D + E
Sbjct: 205 VPDDHARQAEYEAGP 219
Score = 59.0 bits (143), Expect = 4e-10
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G +I I+S S A Y A+K + I+ REL + I+ + I PG +
Sbjct: 139 GLLIWISSSSS-AGGTPPYLAPYFAAKAAMDAIAVQYAREL--SRWGIETSIIVPGAFTS 195
Query: 275 EIFKAANWPVHDPKTPTLQSEDIA 298
A+ V D + E
Sbjct: 196 GTNHFAHSGVPDDHARQAEYEAGP 219
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 98.0 bits (245), Expect = 4e-24
Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 22/207 (10%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
VV E + + +L + G++ A D+ + + + E G + V++NN
Sbjct: 50 VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA-GRLDVLVNN 108
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AGL G P+ E+W + V + ++ TR A + G I+N S+ G R
Sbjct: 109 AGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVD-HGGVIVNNASVLGWRA 167
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
+ YAA+K GV ++ E V +++ ++SP + + + +
Sbjct: 168 QH--SQSHYAAAKAGVMALTRCSAIEAVEFG--VRINAVSPSIARHKFLEK----TSSSE 219
Query: 182 TPTL-----------QSEDIADQVVYL 197
+ ++A + +L
Sbjct: 220 LLDRLASDEAFGRAAEPWEVAATIAFL 246
Score = 49.4 bits (119), Expect = 4e-07
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N S+ G R + YAA+K GV ++ E V +++ ++SP +
Sbjct: 154 GVIVNNASVLGWRAQH--SQSHYAAAKAGVMALTRCSAIEAVEFG--VRINAVSPSIARH 209
Query: 275 EIFKAANWPVHDPKTPTL-----------QSEDIADQVVYL 304
+ + + + ++A + +L
Sbjct: 210 KFLEK----TSSSELLDRLASDEAFGRAAEPWEVAATIAFL 246
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 97.6 bits (244), Expect = 5e-24
Identities = 33/190 (17%), Positives = 74/190 (38%), Gaps = 25/190 (13%)
Query: 25 GKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYEV 84
K + D+ N ++ + I + + G + V++NNAG+ + S +WR I +V
Sbjct: 46 AKYDHIECDVTNPDQVKASIDHIFKEY-GSISVLVNNAGIESYGKIESMSMGEWRRIIDV 104
Query: 85 NVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDAL 144
N+ ++ A M + + I+NI+S+ + + Y SKH V ++ ++
Sbjct: 105 NLFGYYYASKFAIPYMIRS--RDPSIVNISSVQASIITK--NASAYVTSKHAVIGLTKSI 160
Query: 145 RRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTL-----------------QS 187
+ ++ ++ P T + + A + +
Sbjct: 161 ALDYA---PLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKP 217
Query: 188 EDIADQVVYL 197
+++A V +L
Sbjct: 218 QEVASAVAFL 227
Score = 56.0 bits (136), Expect = 3e-09
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 22/107 (20%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
I+NI+S+ + + Y SKH V ++ ++ + ++ ++ P T
Sbjct: 126 PSIVNISSVQASIITK--NASAYVTSKHAVIGLTKSIALDYA---PLLRCNAVCPATIDT 180
Query: 275 EIFKAANWPVHDPKTPTL-----------------QSEDIADQVVYL 304
+ + A + + +++A V +L
Sbjct: 181 PLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFL 227
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 97.3 bits (243), Expect = 8e-24
Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 29/220 (13%)
Query: 2 IVVGLARREENIQKMAKELEQ-YPGKLHARKVDLRNEKEILDT----FQWIKETFKGGVH 56
+VV E Q++ EL G K DL +LD F G
Sbjct: 38 VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF-GRCD 96
Query: 57 VMINNAGLVGNAPLTSGET-----------EKWRNIYEVNVLALNICTREAAQSMFANSI 105
V++NNA PL G+ + ++ N +A R A+
Sbjct: 97 VLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGA 156
Query: 106 ---DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISP 162
N ++N+ LP G +Y +KH + ++ A EL + I+V +++P
Sbjct: 157 WRSRNLSVVNLCDAMTDLPLP--GFCVYTMAKHALGGLTRAAALELAPRH--IRVNAVAP 212
Query: 163 GMTATEIFKAANWPVHDPKTPTL-----QSEDIADQVVYL 197
G++ + L + IAD + +L
Sbjct: 213 GLSLLPPAMPQETQEEYRRKVPLGQSEASAAQIADAIAFL 252
Score = 59.6 bits (145), Expect = 2e-10
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
N ++N+ LP G +Y +KH + ++ A EL + I+V +++PG++
Sbjct: 161 NLSVVNLCDAMTDLPLP--GFCVYTMAKHALGGLTRAAALELAPRH--IRVNAVAPGLSL 216
Query: 274 TEIFKAANWPVHDPKTPTL-----QSEDIADQVVYL 304
+ L + IAD + +L
Sbjct: 217 LPPAMPQETQEEYRRKVPLGQSEASAAQIADAIAFL 252
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 97.2 bits (243), Expect = 9e-24
Identities = 38/213 (17%), Positives = 82/213 (38%), Gaps = 24/213 (11%)
Query: 3 VVGLARREENIQKMAKELEQ--YPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
+ + E ++ + + ++ D+ +E ++ E F G + N
Sbjct: 40 LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF-GRIDGFFN 98
Query: 61 NAGLVGN-APLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGH 119
NAG+ G P S ++ + +N+ + + + + M +G ++N S+ G
Sbjct: 99 NAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ--GSGMVVNTASVGGI 156
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHD 179
R + + YAA+KHGV ++ E I++ +I+PG T + + + +
Sbjct: 157 RGIG--NQSGYAAAKHGVVGLTRNSAVEYGRYG--IRINAIAPGAIWTPMVENSMKQLDP 212
Query: 180 PKTPTL--------------QSEDIADQVVYLL 198
++ +IA V +LL
Sbjct: 213 ENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLL 245
Score = 53.3 bits (129), Expect = 2e-08
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++N S+ G R + + YAA+KHGV ++ E I++ +I+PG T
Sbjct: 145 GMVVNTASVGGIRGIG--NQSGYAAAKHGVVGLTRNSAVEYGRYG--IRINAIAPGAIWT 200
Query: 275 EIFKAANWPVHDPKTPTL--------------QSEDIADQVVYLL 305
+ + + + ++ +IA V +LL
Sbjct: 201 PMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLL 245
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 96.4 bits (241), Expect = 9e-24
Identities = 26/210 (12%), Positives = 66/210 (31%), Gaps = 28/210 (13%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+V A + ++ E E A + R L + +++N
Sbjct: 28 VVCHDASFADAAERQRFESENPGTIALAEQKPERLVDATLQHG--------EAIDTIVSN 79
Query: 62 AGL---VGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISG 118
+ + PL R ++E + + + A + A +I I S G
Sbjct: 80 DYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA--GGASVIFITSSVG 137
Query: 119 HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH 178
+ L + +Y ++ + ++ + L I + +I P + + +
Sbjct: 138 KKPLA--YNPLYGPARAATVALVESAAKTLSRDG--ILLYAIGPNFFNNPTYFPTSDWEN 193
Query: 179 DPKTPTL-----------QSEDIADQVVYL 197
+P+ + +++ + +L
Sbjct: 194 NPELRERVDRDVPLGRLGRPDEMGALITFL 223
Score = 61.4 bits (150), Expect = 3e-11
Identities = 12/101 (11%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
+I I S G + L + +Y ++ + ++ + L I + +I P
Sbjct: 127 ASVIFITSSVGKKPLA--YNPLYGPARAATVALVESAAKTLSRDG--ILLYAIGPNFFNN 182
Query: 275 EIFKAANWPVHDPKTPTL-----------QSEDIADQVVYL 304
+ + ++P+ + +++ + +L
Sbjct: 183 PTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMGALITFL 223
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 96.4 bits (241), Expect = 1e-23
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 26/207 (12%)
Query: 4 VGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAG 63
V L +++A+ + +VDL +E+E + + G V V++NNA
Sbjct: 33 VALCDLRPEGKEVAEAIGG-----AFFQVDLEDERERVRFVEEAAYAL-GRVDVLVNNAA 86
Query: 64 LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLP 123
+ + +WR + EVN+ A + AA+ M G I+N+ S+ G
Sbjct: 87 IAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG--GGAIVNVASVQGLFAEQ 144
Query: 124 IDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP--- 180
+A Y ASK G+ ++ +L +L RI+V +++PG ATE A DP
Sbjct: 145 --ENAAYNASKGGLVNLTRSLALDLA--PLRIRVNAVAPGAIATEAVLEAIALSPDPERT 200
Query: 181 ------KTPTL----QSEDIADQVVYL 197
L + E++A+ V++L
Sbjct: 201 RRDWEDLHA-LRRLGKPEEVAEAVLFL 226
Score = 57.1 bits (139), Expect = 1e-09
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N+ S+ G +A Y ASK G+ ++ +L +L RI+V +++PG AT
Sbjct: 129 GAIVNVASVQGLFAEQ--ENAAYNASKGGLVNLTRSLALDLA--PLRIRVNAVAPGAIAT 184
Query: 275 EIFKAANWPVHDP---------KTPTL----QSEDIADQVVYL 304
E A DP L + E++A+ V++L
Sbjct: 185 EAVLEAIALSPDPERTRRDWEDLHA-LRRLGKPEEVAEAVLFL 226
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 96.8 bits (242), Expect = 1e-23
Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 35/212 (16%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV ++ E++ ++ K+D+ NE+E+ + + + + G + +++NNA
Sbjct: 41 VVSVSLDEKSDVNVSDHF----------KIDVTNEEEVKEAVEKTTKKY-GRIDILVNNA 89
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ +PL TE WR I +VNV + + M A +G IINI S+ +
Sbjct: 90 GIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI--GHGSIINIASVQSYAAT 147
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
A Y SKH + ++ ++ + +I+ ++ PG T + A
Sbjct: 148 K--NAAAYVTSKHALLGLTRSVAIDYA---PKIRCNAVCPGTIMTPMVIKAAKMEVGEDE 202
Query: 183 PTL-----------------QSEDIADQVVYL 197
+ + E++A+ V +L
Sbjct: 203 NAVERKIEEWGRQHPMGRIGRPEEVAEVVAFL 234
Score = 52.2 bits (126), Expect = 6e-08
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 22/107 (20%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI S+ + A Y SKH + ++ ++ + +I+ ++ PG T
Sbjct: 133 GSIINIASVQSYAATK--NAAAYVTSKHALLGLTRSVAIDYA---PKIRCNAVCPGTIMT 187
Query: 275 EIFKAANWPVHDPKTPTL-----------------QSEDIADQVVYL 304
+ A + + E++A+ V +L
Sbjct: 188 PMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFL 234
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 96.5 bits (241), Expect = 1e-23
Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 34/243 (13%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ + + NI + + G DL + F GG+ V+INN
Sbjct: 34 VGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF-GGIDVLINN 92
Query: 62 AG-LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDN---GYIININSIS 117
AG LVG PL + + + + N+ ++ + T+ A + A + + +I+ SI+
Sbjct: 93 AGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIA 152
Query: 118 GHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPV 177
G G +Y A+K + + ++ +SPG T V
Sbjct: 153 G-HTGGGPGAGLYGAAKAFLHNVHKNWVDFHTKDG--VRFNIVSPGTVDTAFHADKTQDV 209
Query: 178 HD---PKTPTL----QSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININSISGHRVLP 230
D P + +E++A ++ A+++ +GY I+G VL
Sbjct: 210 RDRISNGIP-MGRFGTAEEMAPAFLFF-----------ASHLASGY------ITGQ-VLD 250
Query: 231 IDG 233
I+G
Sbjct: 251 ING 253
Score = 51.8 bits (125), Expect = 7e-08
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
+I+ SI+G G +Y A+K + + ++ +SPG T
Sbjct: 143 SAVISTGSIAG-HTGGGPGAGLYGAAKAFLHNVHKNWVDFHTKDG--VRFNIVSPGTVDT 199
Query: 275 EIFKAANWPVHD---PKTPTL----QSEDIADQVVYL 304
V D P + +E++A ++
Sbjct: 200 AFHADKTQDVRDRISNGIP-MGRFGTAEEMAPAFLFF 235
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 96.4 bits (241), Expect = 2e-23
Identities = 38/207 (18%), Positives = 77/207 (37%), Gaps = 25/207 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV E ++ A + VDL NE + + +TF G + ++ NNA
Sbjct: 38 VVLADLPETDLAGAAASV---GRGAVHHVVDLTNEVSVRALIDFTIDTF-GRLDIVDNNA 93
Query: 63 GLVGNAPLTSGET--EKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
A + + + W + + VN + + A + + G I+NI+S + H
Sbjct: 94 AHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG--GGAIVNISSATAHA 151
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP 180
YA +K + ++ + + + ++ +I+PG+ T + + P
Sbjct: 152 AYD--MSTAYACTKAAIETLTRYVATQYG--RHGVRCNAIAPGLVRTPRLEVG---LPQP 204
Query: 181 KTPTL----------QSEDIADQVVYL 197
+ +IA+ V +L
Sbjct: 205 IVDIFATHHLAGRIGEPHEIAELVCFL 231
Score = 53.7 bits (130), Expect = 2e-08
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+NI+S + H YA +K + ++ + + + ++ +I+PG+ T
Sbjct: 139 GAIVNISSATAHAAYD--MSTAYACTKAAIETLTRYVATQYG--RHGVRCNAIAPGLVRT 194
Query: 275 EIFKAANWPVHDPKTPTL----------QSEDIADQVVYL 304
+ + P + +IA+ V +L
Sbjct: 195 PRLEVG---LPQPIVDIFATHHLAGRIGEPHEIAELVCFL 231
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 96.5 bits (241), Expect = 2e-23
Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 17/206 (8%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V +R + A++L + +D+R ++ + F G + ++IN
Sbjct: 54 TVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF-GRIDILINC 112
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
A P + ++ + +++ +R + F + G I+NI + G+R
Sbjct: 113 AAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH--GGVIVNITATLGNRG 170
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
++K V ++ L E I+V S++PG +
Sbjct: 171 QA--LQVHAGSAKAAVDAMTRHLAVEW--GPQNIRVNSLAPGPISGTEGLRRLGGPQASL 226
Query: 182 TPTLQS---------EDIADQVVYLL 198
+ + + +IA V+YL
Sbjct: 227 STKVTASPLQRLGNKTEIAHSVLYLA 252
Score = 47.2 bits (113), Expect = 2e-06
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+NI + G+R ++K V ++ L E I+V S++PG +
Sbjct: 157 GVIVNITATLGNRGQA--LQVHAGSAKAAVDAMTRHLAVEW--GPQNIRVNSLAPGPISG 212
Query: 275 EIFKAANWPVHDPKTPTLQS---------EDIADQVVYLL 305
+ + + +IA V+YL
Sbjct: 213 TEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLA 252
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 95.6 bits (239), Expect = 2e-23
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 25/210 (11%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V L E +++ A+ Y K+ + D+ +E ++ E F G + V++NN
Sbjct: 29 VAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQF-GAIDVLVNN 87
Query: 62 AGLVGN---APLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISG 118
AG+ GN L + E++ + VNV + + R M G I+NI S++
Sbjct: 88 AGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ--GAGVIVNIASVAS 145
Query: 119 HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH 178
P G + Y SK V ++ ++ + S I+ ++ PGM T + + +
Sbjct: 146 LVAFP--GRSAYTTSKGAVLQLTKSVAVDYA--GSGIRCNAVCPGMIETPMTQWR---LD 198
Query: 179 DPKTPTL-----------QSEDIADQVVYL 197
P+ + +AD V++L
Sbjct: 199 QPELRDQVLARIPQKEIGTAAQVADAVMFL 228
Score = 54.0 bits (131), Expect = 1e-08
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+NI S++ P G + Y SK V ++ ++ + S I+ ++ PGM T
Sbjct: 135 GVIVNIASVASLVAFP--GRSAYTTSKGAVLQLTKSVAVDYA--GSGIRCNAVCPGMIET 190
Query: 275 EIFKAANWPVHDPKTPTL-----------QSEDIADQVVYL 304
+ + + P+ + +AD V++L
Sbjct: 191 PMTQWR---LDQPELRDQVLARIPQKEIGTAAQVADAVMFL 228
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 95.3 bits (238), Expect = 5e-23
Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 22/183 (12%)
Query: 29 ARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYEVNVLA 88
DLR + G + +++NNAG++ +T W VNV A
Sbjct: 70 HLPGDLREAAYADGLPGAVAAGL-GRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEA 128
Query: 89 LNICTREAAQSMFANSIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRREL 148
R A M A G I+N+ S G R P GHA+Y +K + ++ + +
Sbjct: 129 PFRICRAAIPLMAAAG--GGAIVNVASCWGLRPGP--GHALYCLTKAALASLTQCMGMDH 184
Query: 149 VNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTL--------------QSEDIADQV 194
I++ ++ P T + + + + EDIAD V
Sbjct: 185 A--PQGIRINAVCPNEVNTPMLRTG-FAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVV 241
Query: 195 VYL 197
++L
Sbjct: 242 LFL 244
Score = 56.4 bits (137), Expect = 2e-09
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 19/104 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N+ S G R P GHA+Y +K + ++ + + I++ ++ P T
Sbjct: 146 GAIVNVASCWGLRPGP--GHALYCLTKAALASLTQCMGMDHA--PQGIRINAVCPNEVNT 201
Query: 275 EIFKAANWPVHDPKTPTL--------------QSEDIADQVVYL 304
+ + + + EDIAD V++L
Sbjct: 202 PMLRTG-FAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFL 244
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 95.3 bits (238), Expect = 5e-23
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
VV +R E + A++L E+Y + A + D+ N +E+ + +KE F G + ++N
Sbjct: 48 VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF-GKLDTVVNA 106
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ P +++R + EVN+ REA + + N IINI S++
Sbjct: 107 AGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVE-E 163
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATE 168
+ + + YAASK GV ++ AL +E I+V I+PG T+
Sbjct: 164 VTMPNISAYAASKGGVASLTKALAKEWGRYG--IRVNVIAPGWYRTK 208
Score = 41.3 bits (98), Expect = 2e-04
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
IINI S++ + + + YAASK GV ++ AL +E I+V I+PG T
Sbjct: 151 PSIINIGSLTVE-EVTMPNISAYAASKGGVASLTKALAKEWGRYG--IRVNVIAPGWYRT 207
Query: 275 E 275
+
Sbjct: 208 K 208
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 95.3 bits (238), Expect = 6e-23
Identities = 42/218 (19%), Positives = 85/218 (38%), Gaps = 31/218 (14%)
Query: 3 VVGLARREENIQKMAKELEQ---YPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMI 59
V R E +++ + + + ++++ D+ E + F G + V++
Sbjct: 33 VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF-GKIDVLV 91
Query: 60 NNAGLVGNAPL----TSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININS 115
NNAG T + + ++N+ A+ T++ + A+ G I+N++S
Sbjct: 92 NNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSS 148
Query: 116 I-SGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAAN 174
I +G + P YA +K + + + +L I+V S+SPGM T A
Sbjct: 149 IVAGPQAQP--DFLYYAIAKAALDQYTRSTAIDLAKFG--IRVNSVSPGMVETGFTNAMG 204
Query: 175 WPVHDPKTPTL---------------QSEDIADQVVYL 197
P + + E IA+ +++L
Sbjct: 205 MPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFL 242
Score = 53.0 bits (128), Expect = 3e-08
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 215 GYIININSI-SGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
G I+N++SI +G + P YA +K + + + +L I+V S+SPGM
Sbjct: 141 GEIVNVSSIVAGPQAQP--DFLYYAIAKAALDQYTRSTAIDLAKFG--IRVNSVSPGMVE 196
Query: 274 TEIFKAANWPVHDPKTPTL---------------QSEDIADQVVYL 304
T A P + + E IA+ +++L
Sbjct: 197 TGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFL 242
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 94.5 bits (236), Expect = 6e-23
Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 28/209 (13%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV E + +AK++ G + VD+ + + F GG+ ++NNA
Sbjct: 36 VVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF-GGIDYLVNNA 94
Query: 63 GLVGN---APLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGH 119
+ G L + + E ++ VN+ CTR + M G I+N +S +
Sbjct: 95 AIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG--GGAIVNQSSTAAW 152
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKA------- 172
Y +K G+ ++ L REL I++ +I+PG TE +
Sbjct: 153 L-----YSNYYGLAKVGINGLTQQLSRELG--GRNIRINAIAPGPIDTEANRTTTPKEMV 205
Query: 173 ----ANWPVHDPKTPTLQSEDIADQVVYL 197
P+ TP +D+ ++L
Sbjct: 206 DDIVKGLPLSRMGTP----DDLVGMCLFL 230
Score = 51.4 bits (124), Expect = 7e-08
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 22/101 (21%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+N +S + Y +K G+ ++ L REL I++ +I+PG T
Sbjct: 141 GAIVNQSSTAAWL-----YSNYYGLAKVGINGLTQQLSRELG--GRNIRINAIAPGPIDT 193
Query: 275 EIFKA-----------ANWPVHDPKTPTLQSEDIADQVVYL 304
E + P+ TP +D+ ++L
Sbjct: 194 EANRTTTPKEMVDDIVKGLPLSRMGTP----DDLVGMCLFL 230
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 94.1 bits (235), Expect = 7e-23
Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 17/198 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V + E+ + + + L D+ + + ++ E + V++NNA
Sbjct: 29 VCFIDIDEKR----SADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKL-QRIDVLVNNA 83
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
L+S E++ I V + A +R + N G IINI S +
Sbjct: 84 CRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK---GRIINIASTRAFQSE 140
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
P YA++K G+ ++ AL L + V I+PG +
Sbjct: 141 P--DSEAYASAKGGIVALTHALAMSL---GPDVLVNCIAPGWINVTEQQEFTQEDCA-AI 194
Query: 183 PTL---QSEDIADQVVYL 197
P +DI++ V++L
Sbjct: 195 PAGKVGTPKDISNMVLFL 212
Score = 47.9 bits (115), Expect = 1e-06
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI S + P YA++K G+ ++ AL L + V I+PG
Sbjct: 126 GRIINIASTRAFQSEP--DSEAYASAKGGIVALTHALAMSL---GPDVLVNCIAPGWINV 180
Query: 275 EIFKAANWPVHDPKTPTL---QSEDIADQVVYL 304
+ P +DI++ V++L
Sbjct: 181 TEQQEFTQEDCA-AIPAGKVGTPKDISNMVLFL 212
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 94.6 bits (236), Expect = 9e-23
Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 51/265 (19%)
Query: 3 VVGLARREENIQKMAKELEQ---YPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMI 59
V R E +++ +++ +++ D+ + + F G + +++
Sbjct: 33 VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF-GKLDILV 91
Query: 60 NNAGLVGN----APLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININS 115
NNAG T+ E + +N+ ++ T++A + + G I+NI+S
Sbjct: 92 NNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISS 148
Query: 116 I-SGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAAN 174
I SG P Y+ +K + + +L + I+V SISPG+ AT A
Sbjct: 149 IASGLHATP--DFPYYSIAKAAIDQYTRNTAIDL--IQHGIRVNSISPGLVATGFGSAMG 204
Query: 175 WPVHDPKTPTL---------------QSEDIADQVVYLLKTPAHVQSMFANNIDNGYIIN 219
P K Q +DIA+ + +L A+ + YII
Sbjct: 205 MPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFL-----------ADRKTSSYII- 252
Query: 220 INSISGHRVLPIDG--HAMYAASKH 242
GH L +DG +
Sbjct: 253 -----GH-QLVVDGGSSLIMGLHCQ 271
Score = 55.7 bits (135), Expect = 4e-09
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 215 GYIININSI-SGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
G I+NI+SI SG P Y+ +K + + +L + I+V SISPG+ A
Sbjct: 141 GEIVNISSIASGLHATP--DFPYYSIAKAAIDQYTRNTAIDL--IQHGIRVNSISPGLVA 196
Query: 274 TEIFKAANWPVHDPKTPTL---------------QSEDIADQVVYL 304
T A P K Q +DIA+ + +L
Sbjct: 197 TGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFL 242
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 95.0 bits (237), Expect = 1e-22
Identities = 41/209 (19%), Positives = 77/209 (36%), Gaps = 21/209 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+V +E + + + H D+ +E I I+ G + +++NNA
Sbjct: 61 IVFNDINQELVDRGMAAYKAAGINAHGYVCDVTDEDGIQAMVAQIESEV-GIIDILVNNA 119
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G++ P+ ++R + ++++ A I ++ SM +G IINI S+
Sbjct: 120 GIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKKG--HGKIINICSMMSELGR 177
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
+ YAA+K G+ +++ + E I+ I PG AT D
Sbjct: 178 E--TVSAYAAAKGGLKMLTKNIASEYGEAN--IQCNGIGPGYIATPQTAPLRELQKDGSR 233
Query: 183 PTLQS--------------EDIADQVVYL 197
ED+ V+L
Sbjct: 234 HPFDQFIIAKTPAARWGEAEDLMGPAVFL 262
Score = 41.4 bits (98), Expect = 2e-04
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 18/104 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI S+ + YAA+K G+ +++ + E I+ I PG AT
Sbjct: 163 GKIINICSMMSELGRE--TVSAYAAAKGGLKMLTKNIASEYGEAN--IQCNGIGPGYIAT 218
Query: 275 EIFKAANWPVHDPKTPTLQS--------------EDIADQVVYL 304
D ED+ V+L
Sbjct: 219 PQTAPLRELQKDGSRHPFDQFIIAKTPAARWGEAEDLMGPAVFL 262
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 93.7 bits (234), Expect = 1e-22
Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 28/190 (14%)
Query: 25 GKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYEV 84
L K DL +++I + IK + NAG++ + + E + + ++
Sbjct: 44 ENLKFIKADLTKQQDITNVLDIIKN---VSFDGIFLNAGILIKGSIFDIDIESIKKVLDL 100
Query: 85 NVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDAL 144
NV + + ++ I+ S P Y SK + ++ +L
Sbjct: 101 NVWSSIYFIKGLENNL----KVGASIVFNGSDQCFIAKP--NSFAYTLSKGAIAQMTKSL 154
Query: 145 RRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTL-----------------QS 187
+L + I+V ++ PG T++++ + + Q
Sbjct: 155 ALDLAKYQ--IRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQP 212
Query: 188 EDIADQVVYL 197
++IA+ V++L
Sbjct: 213 QEIAELVIFL 222
Score = 56.0 bits (136), Expect = 2e-09
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 21/107 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
I+ S P Y SK + ++ +L +L + I+V ++ PG T
Sbjct: 120 ASIVFNGSDQCFIAKP--NSFAYTLSKGAIAQMTKSLALDLAKYQ--IRVNTVCPGTVDT 175
Query: 275 EIFKAANWPVHDPKTPTL-----------------QSEDIADQVVYL 304
++++ + + Q ++IA+ V++L
Sbjct: 176 DLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFL 222
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 94.2 bits (235), Expect = 1e-22
Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 24/213 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V G AR +N+ L + D+ + E+ E F G + +++N+A
Sbjct: 51 VYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF-GPIGILVNSA 109
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G G + W ++ + N+ + TRE ++ G I+NI S G + +
Sbjct: 110 GRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGV 169
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDPK 181
A Y ASKHGV + ++ EL I V ++ PG T + +
Sbjct: 170 M--YAAPYTASKHGVVGFTKSVGFELA---KTGITVNAVCPGYVETPMAERVREGYARHW 224
Query: 182 TPTL-----------------QSEDIADQVVYL 197
T E++A V YL
Sbjct: 225 GVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYL 257
Score = 46.9 bits (112), Expect = 3e-06
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 23/108 (21%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+NI S G + + A Y ASKHGV + ++ EL I V ++ PG
Sbjct: 155 GRIVNIASTGGKQGVM--YAAPYTASKHGVVGFTKSVGFELA---KTGITVNAVCPGYVE 209
Query: 274 TEIFKAANWPVHDPKTPTL-----------------QSEDIADQVVYL 304
T + + T E++A V YL
Sbjct: 210 TPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYL 257
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 93.8 bits (234), Expect = 1e-22
Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 49/240 (20%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ R E EL Q A D E I+ +K + +++NA
Sbjct: 54 VIISYRTEH---ASVTELRQ--AGAVALYGDFSCETGIMAFIDLLKTQT-SSLRAVVHNA 107
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
E + + ++ V++LA + + A+ + I++I+ +
Sbjct: 108 SEWLAETPGE-EADNFTRMFSVHMLAPYLINLHCEPLLTAS--EVADIVHISDDVTRKGS 164
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG-----MTATEIFKAANWPV 177
H Y A+K G+ ++ + +KV I+P ++A
Sbjct: 165 S--KHIAYCATKAGLESLTLSFAARFA---PLVKVNGIAPALLMFQPKDDAAYRAN---A 216
Query: 178 HDPKTPTL----QSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININSISGHRVLPIDG 233
K+ L +E I + YLL D+ Y ++G L ++G
Sbjct: 217 LA-KSA-LGIEPGAEVIYQSLRYLL--------------DSTY------VTGT-TLTVNG 253
Score = 56.0 bits (136), Expect = 3e-09
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG---- 270
I++I+ + H Y A+K G+ ++ + +KV I+P
Sbjct: 150 ADIVHISDDVTRKGSS--KHIAYCATKAGLESLTLSFAARFA---PLVKVNGIAPALLMF 204
Query: 271 -MTATEIFKAANWPVHDPKTPTL----QSEDIADQVVYLL 305
++A K+ L +E I + YLL
Sbjct: 205 QPKDDAAYRAN---ALA-KSA-LGIEPGAEVIYQSLRYLL 239
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 93.9 bits (234), Expect = 2e-22
Identities = 49/215 (22%), Positives = 79/215 (36%), Gaps = 26/215 (12%)
Query: 2 IVVGLARREENIQKMAKELEQYPG-KLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
IV+ + I+ + E+ + D+ EI D + + F GG +++N
Sbjct: 52 IVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF-GGADILVN 110
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
NAG+ + E+W I VN+ + R A M G IINI S G
Sbjct: 111 NAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK--GWGRIINIASAHGLV 168
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT--------EIFKA 172
P + Y A+KHG+ ++ + E+ + V SI PG T + +
Sbjct: 169 ASP--FKSAYVAAKHGIMGLTKTVALEVAESG--VTVNSICPGYVLTPLVEKQIPDQART 224
Query: 173 ANWPVHD-------PKTPT---LQSEDIADQVVYL 197
PT + E +A +YL
Sbjct: 225 RGITEEQVINEVMLKGQPTKKFITVEQVASLALYL 259
Score = 44.2 bits (105), Expect = 2e-05
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 22/108 (20%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI S G P + Y A+KHG+ ++ + E+ + V SI PG T
Sbjct: 156 GRIINIASAHGLVASP--FKSAYVAAKHGIMGLTKTVALEVAESG--VTVNSICPGYVLT 211
Query: 275 --------EIFKAANWPVHD-------PKTPT---LQSEDIADQVVYL 304
+ + PT + E +A +YL
Sbjct: 212 PLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYL 259
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 93.4 bits (233), Expect = 2e-22
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+V + E+ ++ K DL + +I F + F GGV +++NNA
Sbjct: 31 IVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREF-GGVDILVNNA 87
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ AP+ E W I +N+ A+ TR A M A + G IINI S+ G
Sbjct: 88 GIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR--NWGRIINIASVHGLVGS 145
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFK------AANWP 176
G A Y A+KHGV ++ + E + +I PG T + + AAN
Sbjct: 146 T--GKAAYVAAKHGVVGLTKVVGLETATSN--VTCNAICPGWVLTPLVQKQIDDRAANGG 201
Query: 177 VHD--------PKTPT---LQSEDIADQVVYL 197
K P+ + E + + V++L
Sbjct: 202 DPLQAQHDLLAEKQPSLAFVTPEHLGELVLFL 233
Score = 44.5 bits (106), Expect = 2e-05
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI S+ G G A Y A+KHGV ++ + E + +I PG T
Sbjct: 131 GRIINIASVHGLVGST--GKAAYVAAKHGVVGLTKVVGLETATSN--VTCNAICPGWVLT 186
Query: 275 EIFK------AANWPVHD--------PKTPT---LQSEDIADQVVYL 304
+ + AAN K P+ + E + + V++L
Sbjct: 187 PLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFL 233
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 93.8 bits (234), Expect = 2e-22
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 23/206 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ R + +++A E+ G A DL + + + + + T V V++NNA
Sbjct: 58 VLAWGRTDGV-KEVADEIADGGGSAEAVVADLADLEGAANVAEELAAT--RRVDVLVNNA 114
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G++ AP +WR + VN+ A + +R +M A+ +G I+ I S+ +
Sbjct: 115 GIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG--SGRIVTIASMLSFQGG 172
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP-- 180
A YAASKH V ++ AL E + V +++PG T A D
Sbjct: 173 R--NVAAYAASKHAVVGLTRALASEWA--GRGVGVNALAPGYVVTANTAAL---RADDER 225
Query: 181 ------KTPT---LQSEDIADQVVYL 197
+ P ED+ V+L
Sbjct: 226 AAEITARIPAGRWATPEDMVGPAVFL 251
Score = 44.5 bits (106), Expect = 2e-05
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+ I S+ + A YAASKH V ++ AL E + V +++PG T
Sbjct: 158 GRIVTIASMLSFQGGR--NVAAYAASKHAVVGLTRALASEWA--GRGVGVNALAPGYVVT 213
Query: 275 EIFKAANWPVHDP--------KTPT---LQSEDIADQVVYL 304
A D + P ED+ V+L
Sbjct: 214 ANTAAL---RADDERAAEITARIPAGRWATPEDMVGPAVFL 251
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 93.0 bits (232), Expect = 3e-22
Identities = 42/250 (16%), Positives = 85/250 (34%), Gaps = 46/250 (18%)
Query: 3 VVGLARREENIQKMAKELEQYP--GKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
++ +R E ++ A + ++ D+R +I F+ ++ GG +++
Sbjct: 34 LLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD--LGGADILVY 91
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
+ G E W Y + + R AA+ M G ++ I S++ R
Sbjct: 92 STGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK--GWGRMVYIGSVTLLR 149
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDP 180
P A+ + V + L EL + V ++ P + T+ ++
Sbjct: 150 --PWQDLALSNIMRLPVIGVVRTLALELA--PHGVTVNAVLPSLILTDRVRSLAEERARR 205
Query: 181 KTPTL-----------------QSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININSI 223
T+ + E++A V +L A + I
Sbjct: 206 SGITVEEALKSMASRIPMGRVGKPEELASVVAFLASEKA------------SF------I 247
Query: 224 SGHRVLPIDG 233
+G V+P+DG
Sbjct: 248 TGA-VIPVDG 256
Score = 48.3 bits (116), Expect = 1e-06
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ I S++ R P A+ + V + L EL + V ++ P + T
Sbjct: 137 GRMVYIGSVTLLR--PWQDLALSNIMRLPVIGVVRTLALELA--PHGVTVNAVLPSLILT 192
Query: 275 E 275
+
Sbjct: 193 D 193
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 93.0 bits (232), Expect = 3e-22
Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 22/207 (10%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
+++ + + +E ++ A VD R+ + G + +++ NAG+
Sbjct: 55 PASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRKVVDDGVAAL-GRLDIIVANAGVAA 113
Query: 67 NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDG 126
E +R++ ++NV A + G II I+S +G ++ P
Sbjct: 114 PQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGG-RGGSIILISSAAGMKMQP--F 170
Query: 127 HAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG-----MTATEIFKAANWPVHDPK 181
Y ASKH VT ++ A EL K I+V S+ PG M + ++ A +
Sbjct: 171 MIHYTASKHAVTGLARAFAAELG--KHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNP 228
Query: 182 T-----------PTLQSEDIADQVVYL 197
+ EDIAD V +L
Sbjct: 229 QLSHVLTPFLPDWVAEPEDIADTVCWL 255
Score = 54.5 bits (132), Expect = 9e-09
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 20/106 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG---- 270
G II I+S +G ++ P Y ASKH VT ++ A EL K I+V S+ PG
Sbjct: 154 GSIILISSAAGMKMQP--FMIHYTASKHAVTGLARAFAAELG--KHSIRVNSVHPGPVNT 209
Query: 271 -MTATEIFKAANWPVHDPKT-----------PTLQSEDIADQVVYL 304
M + ++ A + + EDIAD V +L
Sbjct: 210 PMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWL 255
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 92.6 bits (231), Expect = 3e-22
Identities = 40/211 (18%), Positives = 81/211 (38%), Gaps = 35/211 (16%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ E +Q++ K + R +D+ +K+I + V+ N A
Sbjct: 33 VIATDINESKLQELEKY-----PGIQTRVLDVTKKKQIDQFA----NEV-ERLDVLFNVA 82
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G V + + E + W +NV ++ + + M A +G IIN++S++ V
Sbjct: 83 GFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASS-VK 139
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK- 181
+ +Y+ +K V ++ ++ + + + I+ + PG T + +P+
Sbjct: 140 GVVNRCVYSTTKAAVIGLTKSVAADFI--QQGIRCNCVCPGTVDTPSLQERIQARGNPEE 197
Query: 182 ---------------TPTLQSEDIADQVVYL 197
T E+IA VYL
Sbjct: 198 ARNDFLKRQKTGRFATA----EEIAMLCVYL 224
Score = 51.7 bits (125), Expect = 6e-08
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IIN++S++ V + +Y+ +K V ++ ++ + + + I+ + PG T
Sbjct: 126 GNIINMSSVASS-VKGVVNRCVYSTTKAAVIGLTKSVAADFI--QQGIRCNCVCPGTVDT 182
Query: 275 EIFKAANWPVHDPK----------------TPTLQSEDIADQVVYL 304
+ +P+ T E+IA VYL
Sbjct: 183 PSLQERIQARGNPEEARNDFLKRQKTGRFATA----EEIAMLCVYL 224
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 93.1 bits (232), Expect = 5e-22
Identities = 43/216 (19%), Positives = 87/216 (40%), Gaps = 29/216 (13%)
Query: 3 VVGLARREENIQKMAKELEQYPGK---LHARKVDLRNEKEILDTFQWIKETFKGGVHVMI 59
V R E+ +++ +++ + ++A D+ D F G + +++
Sbjct: 53 VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF-GKIDILV 111
Query: 60 NNAG--LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSI- 116
NNAG L T E ++ +++N A+ T++ + + G I+N++SI
Sbjct: 112 NNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK---GEIVNVSSIV 168
Query: 117 SGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWP 176
+G + G+ YA +K + + +L+ ++V S+SPG AT A P
Sbjct: 169 AGPQAHS--GYPYYACAKAALDQYTRCTAIDLIQHG--VRVNSVSPGAVATGFMGAMGLP 224
Query: 177 VHDPKTPTL---------------QSEDIADQVVYL 197
+ E+IA+ +V+L
Sbjct: 225 ETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFL 260
Score = 52.6 bits (127), Expect = 4e-08
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 20/106 (18%)
Query: 215 GYIININSI-SGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
G I+N++SI +G + G+ YA +K + + +L+ ++V S+SPG A
Sbjct: 159 GEIVNVSSIVAGPQAHS--GYPYYACAKAALDQYTRCTAIDLIQHG--VRVNSVSPGAVA 214
Query: 274 TEIFKAANWPVHDPKTPTL---------------QSEDIADQVVYL 304
T A P + E+IA+ +V+L
Sbjct: 215 TGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFL 260
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 93.1 bits (232), Expect = 5e-22
Identities = 40/211 (18%), Positives = 83/211 (39%), Gaps = 23/211 (10%)
Query: 3 VVGLARREENIQKMAKELEQYP-----GKLHARKVDLRNEKEILDTFQWIKETFKGGVHV 57
VV +R+ E ++ A EL+ ++ + ++RNE+E+ + + +TF G ++
Sbjct: 45 VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTF-GKINF 103
Query: 58 MINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSIS 117
++NN G +P ++ W + E N+ + S G I+NI +
Sbjct: 104 LVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE--HGGSIVNI-IVP 160
Query: 118 GHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPV 177
P A++ GV ++ +L E S I++ ++PG+ ++
Sbjct: 161 TKAGFP--LAVHSGAARAGVYNLTKSLALEWA--CSGIRINCVAPGVIYSQTAVENYGSW 216
Query: 178 HDPKTPTLQS----------EDIADQVVYLL 198
E+++ V +LL
Sbjct: 217 GQSFFEGSFQKIPAKRIGVPEEVSSVVCFLL 247
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+NI + P A++ GV ++ +L E S I++ ++PG+ +
Sbjct: 152 GSIVNI-IVPTKAGFP--LAVHSGAARAGVYNLTKSLALEWA--CSGIRINCVAPGVIYS 206
Query: 275 EIFKAANWPVHDPKTPTLQS----------EDIADQVVYLL 305
+ E+++ V +LL
Sbjct: 207 QTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLL 247
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 91.9 bits (229), Expect = 7e-22
Identities = 42/218 (19%), Positives = 76/218 (34%), Gaps = 25/218 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V R + ++ +A+E + G+ D E E+ F+ + +G + V++NNA
Sbjct: 32 VYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNA 91
Query: 63 GLVGNAPLTSGET-------EKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININS 115
L + W +I V + C+ A+ M G I+ I+S
Sbjct: 92 YAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPA--GQGLIVVISS 149
Query: 116 ISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANW 175
+ + + Y K ++ EL ++ + S+ PG+ TE+ K
Sbjct: 150 PGSLQYM---FNVPYGVGKAACDKLAADCAHEL--RRHGVSCVSLWPGIVQTELLKEHMA 204
Query: 176 PVHDPKTPTLQS-----------EDIADQVVYLLKTPA 202
+ P L+ E VV L P
Sbjct: 205 KEEVLQDPVLKQFKSAFSSAETTELSGKCVVALATDPN 242
Score = 46.1 bits (110), Expect = 5e-06
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+ I+S + + + Y K ++ EL ++ + S+ PG+ T
Sbjct: 142 GLIVVISSPGSLQYM---FNVPYGVGKAACDKLAADCAHEL--RRHGVSCVSLWPGIVQT 196
Query: 275 EIFKAANWPVHDPKTPTLQS-----------EDIADQVVYLLKTPAHVQIT 314
E+ K + P L+ E VV L P + ++
Sbjct: 197 ELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLS 247
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 91.5 bits (228), Expect = 8e-22
Identities = 49/215 (22%), Positives = 75/215 (34%), Gaps = 26/215 (12%)
Query: 2 IVVGLARREENIQKMAKELEQYPG-KLHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
IV+ I+K+ L G K+ DL + + G + +++N
Sbjct: 31 IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM-GRIDILVN 89
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
NAG+ A + TEKW I +N+ A+ T A M G IINI S G
Sbjct: 90 NAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ--GFGRIINIASAHGLV 147
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT--------EIFKA 172
+ Y A+KHGV + E + I +I PG T + +
Sbjct: 148 ASA--NKSAYVAAKHGVVGFTKVTALETAGQG--ITANAICPGWVRTPLVEKQISALAEK 203
Query: 173 ANWPVHD-------PKTPT---LQSEDIADQVVYL 197
K P+ + E + V+L
Sbjct: 204 NGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFL 238
Score = 44.5 bits (106), Expect = 2e-05
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 22/108 (20%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IINI S G + Y A+KHGV + E + I +I PG T
Sbjct: 135 GRIINIASAHGLVASA--NKSAYVAAKHGVVGFTKVTALETAGQG--ITANAICPGWVRT 190
Query: 275 --------EIFKAANWPVHD-------PKTPT---LQSEDIADQVVYL 304
+ + K P+ + E + V+L
Sbjct: 191 PLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFL 238
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 91.9 bits (229), Expect = 1e-21
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 24/213 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V AR EE ++ KEL + + R D+R+ EI + E + G V V++NNA
Sbjct: 49 VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-GPVDVLVNNA 107
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G G E W ++ E N+ + T++ ++ G I+NI S G + +
Sbjct: 108 GRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV 167
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDPK 181
A Y+ASKHGV + AL EL I V ++ PG T + + D
Sbjct: 168 V--HAAPYSASKHGVVGFTKALGLELA---RTGITVNAVCPGFVETPMAASVREHYSDIW 222
Query: 182 TPTL-----------------QSEDIADQVVYL 197
+ Q ++A+ V YL
Sbjct: 223 EVSTEEAFDRITARVPIGRYVQPSEVAEMVAYL 255
Score = 47.2 bits (113), Expect = 2e-06
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 23/108 (21%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+NI S G + + A Y+ASKHGV + AL EL I V ++ PG
Sbjct: 153 GRIVNIASTGGKQGVV--HAAPYSASKHGVVGFTKALGLELA---RTGITVNAVCPGFVE 207
Query: 274 TEIFKAANWPVHDPKTPTL-----------------QSEDIADQVVYL 304
T + + D + Q ++A+ V YL
Sbjct: 208 TPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYL 255
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 90.5 bits (225), Expect = 2e-21
Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 9/146 (6%)
Query: 53 GGVHVMINNAG-LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYII 111
V ++ AG G + + +++ ++ I + A + + + G +
Sbjct: 75 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHL----KEGGLLT 130
Query: 112 NINSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFK 171
+ + P G Y +K V + +L + S ++ P T + +
Sbjct: 131 LAGAKAALDGTP--GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR 188
Query: 172 AANWPVHDPKTPTLQSEDIADQVVYL 197
+ P D + T E + +
Sbjct: 189 KS-MPEADFSSWT-PLEFLVETFHDW 212
Score = 63.5 bits (155), Expect = 5e-12
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 19/120 (15%)
Query: 200 TPAHVQSMFANNID---------------NGYIININSISGHRVLPIDGHAMYAASKHGV 244
+ M+ +I G + + + P G Y +K V
Sbjct: 97 LFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP--GMIGYGMAKGAV 154
Query: 245 TVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 304
+ +L + S ++ P T + + + P D + T E + +
Sbjct: 155 HQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKS-MPEADFSSWT-PLEFLVETFHDW 212
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 91.1 bits (227), Expect = 2e-21
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
E++ + A+ +E K R +D+R++ + + E F G + V++ NAG++
Sbjct: 59 PASPEDLDETARLVEDQGRKALTRVLDVRDDAALRELVADGMEQF-GRLDVVVANAGVLS 117
Query: 67 NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDG 126
+ E+W + VN+ R +M + G I+ ++S +G + P G
Sbjct: 118 WGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAG-NGGSIVVVSSSAGLKATP--G 174
Query: 127 HAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEI---------------FK 171
+ Y+ASKHG+T +++ L EL + I+V SI P T + F
Sbjct: 175 NGHYSASKHGLTALTNTLAIELG--EYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFV 232
Query: 172 AANWPVHDPKTPTLQSEDIADQVVYL 197
+ P+ + ++++AD V +L
Sbjct: 233 HSFPPMPVQPNGFMTADEVADVVAWL 258
Score = 54.5 bits (132), Expect = 1e-08
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+ ++S +G + P G+ Y+ASKHG+T +++ L EL + I+V SI P T
Sbjct: 158 GSIVVVSSSAGLKATP--GNGHYSASKHGLTALTNTLAIELG--EYGIRVNSIHPYSVET 213
Query: 275 EI---------------FKAANWPVHDPKTPTLQSEDIADQVVYL 304
+ F + P+ + ++++AD V +L
Sbjct: 214 PMIEPEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWL 258
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 90.0 bits (224), Expect = 3e-21
Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+GL + ++ A EL + R D+ NE + + K+ F G VH ++N A
Sbjct: 34 VLGLDLKPPAGEEPAAEL---GAAVRFRNADVTNEADATAALAFAKQEF-GHVHGLVNCA 89
Query: 63 GLVGNAPLTSGE----TEKWRNIYEVNVLALNICTREAAQSMFANSID----NGYIININ 114
G + + + VN++ R AA+ M D G I+N
Sbjct: 90 GTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTA 149
Query: 115 SISGHRVLPID---GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFK 171
SI+ D G A YAASK GV ++ REL + I+V +I+PG+ T +
Sbjct: 150 SIAAF-----DGQIGQAAYAASKGGVAALTLPAARELA--RFGIRVVTIAPGIFDTPMMA 202
Query: 172 AANWPVHDPKTPTL-------QSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININSIS 224
V D ++ ++E+ A V ++ +N ++
Sbjct: 203 GMPQDVQDALAASVPFPPRLGRAEEYAALVKHI--------------CENTM------LN 242
Query: 225 GHRVLPIDGHAMYAASK 241
G V+ +DG A+ A +
Sbjct: 243 G-EVIRLDG-ALRMAPR 257
Score = 38.4 bits (90), Expect = 0.002
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 211 NIDNGYIININSISGHRVLPID---GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSI 267
+ + G I+N SI+ D G A YAASK GV ++ REL + I+V +I
Sbjct: 139 DGERGVIVNTASIAAF-----DGQIGQAAYAASKGGVAALTLPAARELA--RFGIRVVTI 191
Query: 268 SPGMTATEIFKAANWPVHDPKTPTL-------QSEDIADQVVYLLKTP 308
+PG+ T + V D ++ ++E+ A V ++ +
Sbjct: 192 APGIFDTPMMAGMPQDVQDALAASVPFPPRLGRAEEYAALVKHICENT 239
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 88.3 bits (220), Expect = 9e-21
Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 17/203 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+ + + ++ K D+ ++ + + TF G +++NNA
Sbjct: 34 IAIADLVPA--PEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF-GRCDILVNNA 90
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ P E+W+ +E+NV + + + M N G IIN+ S + L
Sbjct: 91 GIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTY--WL 146
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
I+ + Y ++K + AL +L I V +I+P + T +A+
Sbjct: 147 KIEAYTHYISTKAANIGFTRALASDLGKDG--ITVNAIAPSLVRTATTEASALSAMFDVL 204
Query: 183 PTL--------QSEDIADQVVYL 197
P + D+ +L
Sbjct: 205 PNMLQAIPRLQVPLDLTGAAAFL 227
Score = 49.0 bits (118), Expect = 6e-07
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G IIN+ S + L I+ + Y ++K + AL +L I V +I+P + T
Sbjct: 134 GRIINLTSTTY--WLKIEAYTHYISTKAANIGFTRALASDLGKDG--ITVNAIAPSLVRT 189
Query: 275 EIFKAANWPVHDPKTPTL--------QSEDIADQVVYL 304
+A+ P + D+ +L
Sbjct: 190 ATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAFL 227
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 88.7 bits (221), Expect = 1e-20
Identities = 45/201 (22%), Positives = 84/201 (41%), Gaps = 19/201 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+V + R E + + LE + A D+ + K + F E F G +H + + A
Sbjct: 33 LVAVDREERLLAEAVAALE---AEAIAVVADVSDPKAVEAVFAEALEEF-GRLHGVAHFA 88
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ +A + E W + VN+ + R+A + + + G ++ S++G L
Sbjct: 89 GVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL----EEGGSLVLTGSVAG---L 141
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
G A YAA K GV ++ L EL K ++V + PG+ T + + +
Sbjct: 142 GAFGLAHYAAGKLGVVGLARTLALELARKG--VRVNVLLPGLIQTPMTAGLPPWAWEQEV 199
Query: 183 PTL------QSEDIADQVVYL 197
+ E++A ++L
Sbjct: 200 GASPLGRAGRPEEVAQAALFL 220
Score = 46.4 bits (111), Expect = 4e-06
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ S++G L G A YAA K GV ++ L EL K ++V + PG+ T
Sbjct: 130 GSLVLTGSVAG---LGAFGLAHYAAGKLGVVGLARTLALELARKG--VRVNVLLPGLIQT 184
Query: 275 EIFKAANWPVHDPKTPTL------QSEDIADQVVYL 304
+ + + + E++A ++L
Sbjct: 185 PMTAGLPPWAWEQEVGASPLGRAGRPEEVAQAALFL 220
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 88.8 bits (221), Expect = 1e-20
Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 17/207 (8%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
I + E + + EL ++ + DL + T + F G + ++NN
Sbjct: 56 IAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF-GRIDCLVNN 114
Query: 62 AG--LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMF-ANSIDNGYIININSISG 118
AG + + E + I VN+ T+ ++M +++ + IINI S+S
Sbjct: 115 AGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSA 174
Query: 119 HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPV 177
V+ Y SK G+ S L L I V + PG+ +++ A +
Sbjct: 175 --VMTSPERLDYCMSKAGLAAFSQGLALRLA---ETGIAVFEVRPGIIRSDMTAAVSGKY 229
Query: 178 HDPKTPTL-------QSEDIADQVVYL 197
L + EDI + V L
Sbjct: 230 DGLIESGLVPMRRWGEPEDIGNIVAGL 256
Score = 48.0 bits (115), Expect = 1e-06
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 207 MFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVT 265
+ ++ + IINI S+S V+ Y SK G+ S L L I V
Sbjct: 156 LASDARASRSIINITSVSA--VMTSPERLDYCMSKAGLAAFSQGLALRLA---ETGIAVF 210
Query: 266 SISPGMTATEIFKAANWPVHDPKTPTL-------QSEDIADQVVYL 304
+ PG+ +++ A + L + EDI + V L
Sbjct: 211 EVRPGIIRSDMTAAVSGKYDGLIESGLVPMRRWGEPEDIGNIVAGL 256
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 87.2 bits (217), Expect = 3e-20
Identities = 31/213 (14%), Positives = 72/213 (33%), Gaps = 25/213 (11%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ + + Q +D+ + ++ Q + + ++N
Sbjct: 23 TALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAET-ERLDALVNA 81
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG++ E W+ + VNV ++ G I+ + S + H
Sbjct: 82 AGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR--GGAIVTVASDAAHT- 138
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
P G + Y ASK + ++ ++ EL ++ +SPG T T++ +
Sbjct: 139 -PRIGMSAYGASKAALKSLALSVGLELA---GSGVRCNVVSPGSTDTDMQRTLWVSDDAE 194
Query: 181 KTPTL----------------QSEDIADQVVYL 197
+ + ++IA+ +++L
Sbjct: 195 EQRIRGFGEQFKLGIPLGKIARPQEIANTILFL 227
Score = 52.9 bits (128), Expect = 2e-08
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+ + S + H P G + Y ASK + ++ ++ EL ++ +SPG T
Sbjct: 126 GAIVTVASDAAHT--PRIGMSAYGASKAALKSLALSVGLELA---GSGVRCNVVSPGSTD 180
Query: 274 TEIFKAANWPVHDPKTPTL----------------QSEDIADQVVYL 304
T++ + + + ++IA+ +++L
Sbjct: 181 TDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFL 227
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 86.8 bits (216), Expect = 3e-20
Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 28/206 (13%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V +R E + + DL + + + E GG+HV+++ A
Sbjct: 29 VAIASRNPEEAAQSLGAV--------PLPTDLEKD-DPKGLVKRALEAL-GGLHVLVHAA 78
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
+ P E+WR + +++ + + AA M G ++ I S++
Sbjct: 79 AVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG--WGRVLFIGSVTTFTAG 136
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK- 181
Y +K + ++ AL +E I+V + PG TE +P+
Sbjct: 137 GPVPIPAYTTAKTALLGLTRALAKEWARLG--IRVNLLCPGYVETEFTLPL---RQNPEL 191
Query: 182 -------TPTL---QSEDIADQVVYL 197
P + E+IA L
Sbjct: 192 YEPITARIPMGRWARPEEIARVAAVL 217
Score = 50.5 bits (122), Expect = 2e-07
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ I S++ Y +K + ++ AL +E I+V + PG T
Sbjct: 122 GRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLG--IRVNLLCPGYVET 179
Query: 275 EIFKAANWPVHDPK--------TPTL---QSEDIADQVVYL 304
E +P+ P + E+IA L
Sbjct: 180 EFTLPL---RQNPELYEPITARIPMGRWARPEEIARVAAVL 217
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 87.3 bits (217), Expect = 4e-20
Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V L + AK+L D+ +EK++ K F G V V +N A
Sbjct: 39 AVLLDLPNSGGEAQAKKL---GNNCVFAPADVTSEKDVQTALALAKGKF-GRVDVAVNCA 94
Query: 63 GLVGNAPLTSG------ETEKWRNIYEVNVLALNICTREAAQSMFANSIDN----GYIIN 112
G+ + + E ++ + +VN++ R A M N D G IIN
Sbjct: 95 GIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIIN 154
Query: 113 INSISGHRVLPID---GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEI 169
S++ + G A Y+ASK G+ ++ + R+L I+V +I+PG+ T +
Sbjct: 155 TASVAA-----FEGQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRVMTIAPGLFGTPL 207
Query: 170 FKAANWPVHDPKTPTLQSEDIADQVVYL--LKTPAHVQSMFANNIDNGYIININSISGHR 227
+ V + +A QV + L PA + I+N + ++G
Sbjct: 208 LTSLPEKVCNF---------LASQVPFPSRLGDPAEYAHLVQAIIENPF------LNG-E 251
Query: 228 VLPIDG 233
V+ +DG
Sbjct: 252 VIRLDG 257
Score = 38.0 bits (89), Expect = 0.002
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 215 GYIININSISGHRVLPID---GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGM 271
G IIN S++ + G A Y+ASK G+ ++ + R+L I+V +I+PG+
Sbjct: 150 GVIINTASVAA-----FEGQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRVMTIAPGL 202
Query: 272 TATEIFKA 279
T + +
Sbjct: 203 FGTPLLTS 210
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 87.3 bits (217), Expect = 5e-20
Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 39/221 (17%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
++++ E+E+ K + +VD+R+ + F G + V++ NAG+
Sbjct: 53 LATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSRELANAVAEF-GKLDVVVANAGICP 111
Query: 67 NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISG-------- 118
+ + + ++V+ + + A + II S++G
Sbjct: 112 LGAHLP--VQAFADAFDVDFVGVINTVHAALPYL----TSGASIITTGSVAGLIAAAQPP 165
Query: 119 -HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEI-------- 169
G A Y+ +K V + L +L I+ I P T++
Sbjct: 166 GAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLA--PQSIRANVIHPTNVNTDMLNSAPMYR 223
Query: 170 -------------FKAANWPVHDPKTPTLQSEDIADQVVYL 197
A + TP +++ DI++ V +L
Sbjct: 224 QFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAVCFL 264
Score = 53.4 bits (129), Expect = 2e-08
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 32/123 (26%)
Query: 212 IDNGYIININSISG---------HRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRI 262
II S++G G A Y+ +K V + L +L I
Sbjct: 144 TSGASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLA--PQSI 201
Query: 263 KVTSISPGMTATEI---------------------FKAANWPVHDPKTPTLQSEDIADQV 301
+ I P T++ A + TP +++ DI++ V
Sbjct: 202 RANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAV 261
Query: 302 VYL 304
+L
Sbjct: 262 CFL 264
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 87.0 bits (216), Expect = 5e-20
Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 47/248 (18%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV E + +A EL + ++ +E +L + + + ++ +
Sbjct: 57 VVIADLAAEKGKALADEL---GNRAEFVSTNVTSEDSVLAAIEAANQLG-RLRYAVVAHG 112
Query: 63 GLVGNAPLTSGE------TEKWRNIYEVNVLALNICTREAAQSMFANSIDN----GYIIN 112
G G A + ++ + R A S+ A G ++
Sbjct: 113 G-FGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVL 171
Query: 113 INSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKA 172
SI+G+ G YAA+K GV ++ A R+L + I+V +I+PG T I ++
Sbjct: 172 TASIAGYEGQI--GQTAYAAAKAGVIGLTIAAARDLS--SAGIRVNTIAPGTMKTPIMES 227
Query: 173 ANWPVHDPKTPTL-------QSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININSISG 225
+ ++ AD +L + NGY I+G
Sbjct: 228 VGEEALAKFAANIPFPKRLGTPDEFADAAAFL--------------LTNGY------ING 267
Query: 226 HRVLPIDG 233
V+ +DG
Sbjct: 268 E-VMRLDG 274
Score = 43.8 bits (104), Expect = 3e-05
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 204 VQSMFAN----NIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKK 259
S+ A N + G ++ SI+G+ G YAA+K GV ++ A R+L
Sbjct: 152 AASIAAAEPRENGERGALVLTASIAGYEGQI--GQTAYAAAKAGVIGLTIAAARDLS--S 207
Query: 260 SRIKVTSISPGMTATEIFKAANWPVHDPKTPTL-------QSEDIADQVVYLL 305
+ I+V +I+PG T I ++ + ++ AD +LL
Sbjct: 208 AGIRVNTIAPGTMKTPIMESVGEEALAKFAANIPFPKRLGTPDEFADAAAFLL 260
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 86.1 bits (214), Expect = 1e-19
Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 28/213 (13%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
A E++ + A ++ + ++ +VD+R+ + E G + +++ NAG+
Sbjct: 58 ASTPEDLAETADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQL-GRLDIIVANAGIGN 116
Query: 67 -NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPID 125
L E W + ++N+ + + M A G II +S+ G + P
Sbjct: 117 GGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGG-RGGSIILTSSVGGLKAYP-- 173
Query: 126 GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT------------------ 167
Y A+KHGV + A EL + I+V S+ P T
Sbjct: 174 HTGHYVAAKHGVVGLMRAFGVELG--QHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLEN 231
Query: 168 ---EIFKAANWPVHDPKTPTLQSEDIADQVVYL 197
+ H P ++ DI++ V++
Sbjct: 232 PGPDDMAPICQMFHTLPIPWVEPIDISNAVLFF 264
Score = 53.0 bits (128), Expect = 3e-08
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 25/111 (22%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G II +S+ G + P Y A+KHGV + A EL + I+V S+ P T
Sbjct: 158 GSIILTSSVGGLKAYP--HTGHYVAAKHGVVGLMRAFGVELG--QHMIRVNSVHPTHVKT 213
Query: 275 ---------------------EIFKAANWPVHDPKTPTLQSEDIADQVVYL 304
+ H P ++ DI++ V++
Sbjct: 214 PMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPIPWVEPIDISNAVLFF 264
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 86.1 bits (214), Expect = 1e-19
Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 28/213 (13%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
+++ + +++E ++ A +VD+R+ + G + +++ NA L
Sbjct: 71 MSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAAVDDGVTQL-GRLDIVLANAALAS 129
Query: 67 -NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPID 125
L + + WR++ +VN+ I R A + A G I+ +SI G R
Sbjct: 130 EGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGK-RGGSIVFTSSIGGLRGAE-- 186
Query: 126 GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEI---------------- 169
Y ASKHG+ + + EL I+V + P AT +
Sbjct: 187 NIGNYIASKHGLHGLMRTMALELG--PRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLEN 244
Query: 170 -----FKAANWPVHDPKTPTLQSEDIADQVVYL 197
F+ A+ +H P ++ DI++ +++L
Sbjct: 245 PTVEDFQVASRQMHVLPIPYVEPADISNAILFL 277
Score = 52.6 bits (127), Expect = 4e-08
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 25/111 (22%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G I+ +SI G R Y ASKHG+ + + EL I+V + P AT
Sbjct: 171 GSIVFTSSIGGLRGAE--NIGNYIASKHGLHGLMRTMALELG--PRNIRVNIVCPSSVAT 226
Query: 275 EI---------------------FKAANWPVHDPKTPTLQSEDIADQVVYL 304
+ F+ A+ +H P ++ DI++ +++L
Sbjct: 227 PMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPYVEPADISNAILFL 277
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 84.2 bits (209), Expect = 1e-19
Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 34/189 (17%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ R ++ VD+ N I ++ + G V +++
Sbjct: 29 VITAGRHSGDVT-----------------VDITNIDSIKKMYEQV-----GKVDAIVSAT 66
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G +PLT EK + S+ D G I
Sbjct: 67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSL----NDKGSFTLTTGIMMED-- 120
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
PI A A + VT + + E+ I++ ++SP + K +
Sbjct: 121 PIVQGASAAMANGAVTAFAKSAAIEM---PRGIRINTVSPNVLEESWDKLEPFF---EGF 174
Query: 183 PTLQSEDIA 191
+ + +A
Sbjct: 175 LPVPAAKVA 183
Score = 53.8 bits (130), Expect = 8e-09
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 23/114 (20%)
Query: 200 TPAHVQSMFANNI---------------DNGYIININSISGHRVLPIDGHAMYAASKHGV 244
TP ++ + D G I PI A A + V
Sbjct: 78 TPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED--PIVQGASAAMANGAV 135
Query: 245 TVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTLQSEDIA 298
T + + E+ I++ ++SP + K + + + +A
Sbjct: 136 TAFAKSAAIEM---PRGIRINTVSPNVLEESWDKLEPFF---EGFLPVPAAKVA 183
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 85.8 bits (213), Expect = 2e-19
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 33/222 (14%)
Query: 2 IVVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDT----FQWIKETFKGGVH 56
+V+ E +A EL ++ + DL N + + F G
Sbjct: 50 VVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAF-GRCD 108
Query: 57 VMINNAGLVGNAPLTSGETE----------KWRNIYEVNVLALNICTREAAQSMFANSID 106
V++NNA PL G+ E + + N +A + T AQ + +
Sbjct: 109 VLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPN 168
Query: 107 ----NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISP 162
N I+N+ + ++Y KH + ++ + EL I+V ++P
Sbjct: 169 CTSSNLSIVNLCDAMVDQPCM--AFSLYNMGKHALVGLTQSAALELAPYG--IRVNGVAP 224
Query: 163 GMTATEIFKAANWPVHDP---KTPTL----QSEDIADQVVYL 197
G++ + A D K P +E IAD V++L
Sbjct: 225 GVSLLPV--AMGEEEKDKWRRKVPLGRREASAEQIADAVIFL 264
Score = 51.9 bits (125), Expect = 7e-08
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 214 NGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTA 273
N I+N+ + ++Y KH + ++ + EL I+V ++PG++
Sbjct: 173 NLSIVNLCDAMVDQPCM--AFSLYNMGKHALVGLTQSAALELAPYG--IRVNGVAPGVSL 228
Query: 274 TEIFKAANWPVHDP---KTPTL----QSEDIADQVVYL 304
+ A D K P +E IAD V++L
Sbjct: 229 LPV--AMGEEEKDKWRRKVPLGRREASAEQIADAVIFL 264
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 84.9 bits (211), Expect = 2e-19
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 18/203 (8%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ E + A + K A D+ + + F I+ GG+ +++NNA
Sbjct: 33 VIVSDINAEGAKAAAASI---GKKARAIAADISDPGSVKALFAEIQALT-GGIDILVNNA 88
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
+V + + WR I +VN+ I TR M A G +I+I S +
Sbjct: 89 SIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAG-KAGRVISIASNTFFAGT 147
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDPK 181
P A Y A+K GV + AL EL I +++PG+ ++ KA+
Sbjct: 148 P--NMAAYVAAKGGVIGFTRALATELG---KYNITANAVTPGLIESDGVKASPHNEAFGF 202
Query: 182 TPTL-------QSEDIADQVVYL 197
L Q E IAD V +L
Sbjct: 203 VEMLQAMKGKGQPEHIADVVSFL 225
Score = 45.2 bits (108), Expect = 1e-05
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G +I+I S + P A Y A+K GV + AL EL I +++PG+
Sbjct: 133 GRVISIASNTFFAGTP--NMAAYVAAKGGVIGFTRALATELG---KYNITANAVTPGLIE 187
Query: 274 TEIFKAANWPVHDPKTPTL-------QSEDIADQVVYL 304
++ KA+ L Q E IAD V +L
Sbjct: 188 SDGVKASPHNEAFGFVEMLQAMKGKGQPEHIADVVSFL 225
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 85.5 bits (212), Expect = 3e-19
Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 44/236 (18%)
Query: 2 IVVGLARREENIQKMAKELE-QYPGKLHARKVDLRNEKEILDTFQW-------------- 46
+ + R ++ L + P + DL N +
Sbjct: 36 VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAEL 95
Query: 47 IKETFK--GGVHVMINNAGLVGNAPL--------------TSGETEKWRNIYEVNVLALN 90
+ + G V++NNA PL +++ N +A
Sbjct: 96 VAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY 155
Query: 91 ICTREAAQSMFANSI----DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRR 146
+ A + N IIN+ ++ L G+ +Y +K + ++ +
Sbjct: 156 FLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLL--GYTIYTMAKGALEGLTRSAAL 213
Query: 147 ELVNKKSRIKVTSISPGMTA-TEIFKAANWPVHDPKTPTL----QSEDIADQVVYL 197
EL + I+V + PG++ + A W H K P + +++D V++L
Sbjct: 214 ELAPLQ--IRVNGVGPGLSVLVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFL 267
Score = 57.0 bits (138), Expect = 2e-09
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
N IIN+ ++ L G+ +Y +K + ++ + EL + I+V + PG++
Sbjct: 175 TNYSIINMVDAMTNQPLL--GYTIYTMAKGALEGLTRSAALELAPLQ--IRVNGVGPGLS 230
Query: 273 A-TEIFKAANWPVHDPKTPTL----QSEDIADQVVYL 304
+ A W H K P + +++D V++L
Sbjct: 231 VLVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFL 267
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 84.5 bits (210), Expect = 3e-19
Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 19/199 (9%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV +R + +H D+ + + E F G + ++NNA
Sbjct: 55 VVATSRSIK---------PSADPDIHTVAGDISKPETADRIVREGIERF-GRIDSLVNNA 104
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ P E + + VNV T+ AA M +G+I++I + + +
Sbjct: 105 GVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG--SGHIVSITTSLVDQPM 162
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKT 182
A+ + +K G+ ++ +L E ++V ++SPG+ T + A
Sbjct: 163 VGMPSALASLTKGGLNAVTRSLAMEFSRSG--VRVNAVSPGVIKTPMHPAETHSTLAGLH 220
Query: 183 PTL----QSEDIADQVVYL 197
P + + D+ D V+YL
Sbjct: 221 P-VGRMGEIRDVVDAVLYL 238
Score = 49.1 bits (118), Expect = 6e-07
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G+I++I + + + A+ + +K G+ ++ +L E ++V ++SPG+ T
Sbjct: 148 GHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSG--VRVNAVSPGVIKT 205
Query: 275 EIFKAANWPVHDPKTPTL----QSEDIADQVVYL 304
+ A P + + D+ D V+YL
Sbjct: 206 PMHPAETHSTLAGLHP-VGRMGEIRDVVDAVLYL 238
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 84.5 bits (210), Expect = 3e-19
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 19/205 (9%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V R +I +L + GK+ + D+ + + E F GG+ V+ N
Sbjct: 37 VAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF-GGIDVVCAN 95
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ +APL + E+ I+ VNV + ++ A+ +G ++ +SI+G
Sbjct: 96 AGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIAS--GSGRVVLTSSITG--- 150
Query: 122 LPIDGH---AMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVH 178
PI G+ + Y A+K EL K I V +I PG TE
Sbjct: 151 -PITGYPGWSHYGATKAAQLGFMRTAAIELAPHK--ITVNAIMPGNIMTEGLLENGEEYI 207
Query: 179 DPKTPTL------QSEDIADQVVYL 197
++ EDI +L
Sbjct: 208 ASMARSIPAGALGTPEDIGHLAAFL 232
Score = 42.9 bits (102), Expect = 6e-05
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 215 GYIININSISGHRVLPIDGH---AMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGM 271
G ++ +SI+G PI G+ + Y A+K EL K I V +I PG
Sbjct: 140 GRVVLTSSITG----PITGYPGWSHYGATKAAQLGFMRTAAIELAPHK--ITVNAIMPGN 193
Query: 272 TATEIFKAANWPVHDPKTPTL------QSEDIADQVVYL 304
TE ++ EDI +L
Sbjct: 194 IMTEGLLENGEEYIASMARSIPAGALGTPEDIGHLAAFL 232
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 84.5 bits (210), Expect = 3e-19
Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 30/211 (14%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V + ++ E ++ +E+E + + + + G V V+++N
Sbjct: 28 VACHDESFKQKDELEAFAE------TYPQLKPMSEQEPAELIEAVTSAY-GQVDVLVSND 80
Query: 63 GLVG-NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
P+ E +R E + A M +G+II I S +
Sbjct: 81 IFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATP--F 136
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
P + Y +++ G +++AL +EL I V +I P +E
Sbjct: 137 GPWKELSTYTSARAGACTLANALSKELG---EYNIPVFAIGPNYLHSEDSPYFYPTEPWK 193
Query: 181 KTPTLQS--------------EDIADQVVYL 197
P + +++ + V +L
Sbjct: 194 TNPEHVAHVKKVTALQRLGTQKELGELVAFL 224
Score = 50.6 bits (122), Expect = 2e-07
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 20/105 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G+II I S + P + Y +++ G +++AL +EL I V +I P
Sbjct: 125 GHIIFITSATP--FGPWKELSTYTSARAGACTLANALSKELG---EYNIPVFAIGPNYLH 179
Query: 274 TEIFKAANWPVHDPKTPTLQS--------------EDIADQVVYL 304
+E P + +++ + V +L
Sbjct: 180 SEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFL 224
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 85.4 bits (212), Expect = 4e-19
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 27/209 (12%)
Query: 10 EENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAP 69
E +++ + +E+ ++ AR+ D+R+ + F G + ++++N G+
Sbjct: 92 PEELKETVRLVEEQGRRIIARQADVRDLASLQAVVDEALAEF-GHIDILVSNVGISNQGE 150
Query: 70 LTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDGHAM 129
+ S ++W +I + N++ R SM G +I ++S G R P G +
Sbjct: 151 VVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERG-QGGSVIFVSSTVGLRGAP--GQSH 207
Query: 130 YAASKHGVTVISDALRRELVNKKSRIKVTSISPG-----MTATEIFKAANWPVHDPKT-- 182
YAASKHGV + +L E+ I+V S++PG M E P + T
Sbjct: 208 YAASKHGVQGLMLSLANEVGRH--NIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTRE 265
Query: 183 --------------PTLQSEDIADQVVYL 197
P ++ ED+++ V +L
Sbjct: 266 DAAELFSQLTLLPIPWVEPEDVSNAVAWL 294
Score = 51.1 bits (123), Expect = 2e-07
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 25/111 (22%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG---- 270
G +I ++S G R P G + YAASKHGV + +L E+ I+V S++PG
Sbjct: 188 GSVIFVSSTVGLRGAP--GQSHYAASKHGVQGLMLSLANEVGRH--NIRVNSVNPGAVNT 243
Query: 271 -MTATEIFKAANWPVHDPKT----------------PTLQSEDIADQVVYL 304
M E P + T P ++ ED+++ V +L
Sbjct: 244 EMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEPEDVSNAVAWL 294
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 82.9 bits (206), Expect = 1e-18
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 23/206 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VVG A + + +K +++ K +++ + + I + F IK + +++NNA
Sbjct: 32 VVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN-LAIDILVNNA 90
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + + ++W+++ N+ ++ ++E + M G II+I S+ G
Sbjct: 91 GITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR--WGRIISIGSVVGSAGN 148
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG-----MTA--TEIFKAA- 173
P G Y A+K GV S +L E+ SR I V ++PG MT T+ K+
Sbjct: 149 P--GQTNYCAAKAGVIGFSKSLAYEVA---SRNITVNVVAPGFIATDMTDKLTDEQKSFI 203
Query: 174 --NWPVHDPKTPTLQSEDIADQVVYL 197
P P +DIA V +L
Sbjct: 204 ATKIPSGQIGEP----KDIAAAVAFL 225
Score = 44.0 bits (105), Expect = 2e-05
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG--- 270
G II+I S+ G P G Y A+K GV S +L E+ SR I V ++PG
Sbjct: 134 GRIISIGSVVGSAGNP--GQTNYCAAKAGVIGFSKSLAYEVA---SRNITVNVVAPGFIA 188
Query: 271 --MTA--TEIFKAA---NWPVHDPKTPTLQSEDIADQVVYL 304
MT T+ K+ P P +DIA V +L
Sbjct: 189 TDMTDKLTDEQKSFIATKIPSGQIGEP----KDIAAAVAFL 225
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 83.3 bits (207), Expect = 1e-18
Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 28/210 (13%)
Query: 9 REENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNA 68
+++ + +E+ + + KVD+++ + ++T GG+ + I NAG+ A
Sbjct: 55 TADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTL-GGIDIAITNAGISTIA 113
Query: 69 PLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDGHA 128
L E+ +W + N+ A M + G I+ ++S+ GH A
Sbjct: 114 LLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR--NYGRIVTVSSMLGHSANF--AQA 169
Query: 129 MYAASKHGVTVISDALRRELVNKKSRIKVTSISPG-----MTATEI-------------- 169
Y +SK GV ++ +LV I V +++PG MT +
Sbjct: 170 SYVSSKWGVIGLTKCAAHDLVGY--GITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTL 227
Query: 170 --FKAANWPVHDPKTPTLQSEDIADQVVYL 197
++ +H P L+ E++ V++L
Sbjct: 228 KDVESVFASLHLQYAPFLKPEEVTRAVLFL 257
Score = 51.4 bits (124), Expect = 1e-07
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG---- 270
G I+ ++S+ GH A Y +SK GV ++ +LV I V +++PG
Sbjct: 151 GRIVTVSSMLGHSANF--AQASYVSSKWGVIGLTKCAAHDLVGY--GITVNAVAPGNIET 206
Query: 271 -MTATEI----------------FKAANWPVHDPKTPTLQSEDIADQVVYL 304
MT + ++ +H P L+ E++ V++L
Sbjct: 207 PMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFL 257
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 84.0 bits (208), Expect = 1e-18
Identities = 38/237 (16%), Positives = 76/237 (32%), Gaps = 46/237 (19%)
Query: 2 IVVGLARREENIQKMAKELE-QYPGKLHARKVDLRNEKEILDT----------------- 43
+ + R ++ L + P + DL N +
Sbjct: 73 VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAEL 132
Query: 44 FQWIKETFKGGVHVMINNAGLVGNAPL--------------TSGETEKWRNIYEVNVLAL 89
+ G V++NNA PL +++ N +A
Sbjct: 133 VAACYTHW-GRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAP 191
Query: 90 NICTREAAQSMFANSI----DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALR 145
+ A + N IIN+ ++ L G+ +Y +K + ++ +
Sbjct: 192 YFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLL--GYTIYTMAKGALEGLTRSAA 249
Query: 146 RELVNKKSRIKVTSISPGMTA-TEIFKAANWPVHDPKTPTL----QSEDIADQVVYL 197
EL + I+V + PG++ + A W H K P + +++D V++L
Sbjct: 250 LELAPLQ--IRVNGVGPGLSVLVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFL 304
Score = 55.9 bits (135), Expect = 4e-09
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 272
N IIN+ ++ L G+ +Y +K + ++ + EL + I+V + PG++
Sbjct: 212 TNYSIINMVDAMTNQPLL--GYTIYTMAKGALEGLTRSAALELAPLQ--IRVNGVGPGLS 267
Query: 273 A-TEIFKAANWPVHDPKTPTL----QSEDIADQVVYL 304
+ A W H K P + +++D V++L
Sbjct: 268 VLVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFL 304
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 82.6 bits (205), Expect = 2e-18
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 22/206 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+ L EE+ Q++ +E+ K DL +E +E GG+ ++ A
Sbjct: 78 INYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL-GGLDILALVA 136
Query: 63 G-LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
G + +E+++ + VNV AL T+EA + II +SI ++
Sbjct: 137 GKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG----ASIITTSSIQAYQ- 191
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPK 181
P YAA+K + S L +++ K I+V ++PG T + + K
Sbjct: 192 -PSPHLLDYAATKAAILNYSRGLAKQVAEKG--IRVNIVAPGPIWTALQISGGQT--QDK 246
Query: 182 TPTL----------QSEDIADQVVYL 197
P Q ++A VYL
Sbjct: 247 IPQFGQQTPMKRAGQPAELAPVYVYL 272
Score = 46.0 bits (110), Expect = 6e-06
Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 31/130 (23%)
Query: 200 TPAHVQSMFANNI---------------DNGYIININSISGHRVLPIDGHAMYAASKHGV 244
T Q FA N+ II +SI ++ P YAA+K +
Sbjct: 149 TSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ--PSPHLLDYAATKAAI 206
Query: 245 TVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTL----------QS 294
S L +++ K I+V ++PG T + + K P Q
Sbjct: 207 LNYSRGLAKQVAEKG--IRVNIVAPGPIWTALQISGGQT--QDKIPQFGQQTPMKRAGQP 262
Query: 295 EDIADQVVYL 304
++A VYL
Sbjct: 263 AELAPVYVYL 272
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 81.2 bits (201), Expect = 3e-18
Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 9/151 (5%)
Query: 53 GGVHVMINNAG-LVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYII 111
V + AG G + + + + + +V + I + A + G +
Sbjct: 71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHL----KPGGLLQ 126
Query: 112 NINSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFK 171
+ + P Y +K V ++ +L + V +I P T + +
Sbjct: 127 LTGAAAAMGPTP--SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNR 184
Query: 172 AANWPVHDPKTPTLQSEDIADQVVYLLKTPA 202
P D + T I++ ++ +
Sbjct: 185 KW-MPNADHSSWT-PLSFISEHLLKWTTETS 213
Score = 57.3 bits (139), Expect = 8e-10
Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 19/130 (14%)
Query: 200 TPAHVQSMFANNI---------------DNGYIININSISGHRVLPIDGHAMYAASKHGV 244
+ M ++ G + + + P Y +K V
Sbjct: 93 FVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP--SMIGYGMAKAAV 150
Query: 245 TVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 304
++ +L + V +I P T + + P D + T I++ ++
Sbjct: 151 HHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKW-MPNADHSSWT-PLSFISEHLLKW 208
Query: 305 LKTPAHVQIT 314
+ +
Sbjct: 209 TTETSSRPSS 218
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 81.9 bits (203), Expect = 4e-18
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 15/203 (7%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V AR + + EL E G + ++D+ + D + + + F G + V+ N
Sbjct: 68 VAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF-GALDVVCAN 126
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ A L + E+ + +VNV + + A+ G +I +SI+G V
Sbjct: 127 AGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG--RGRVILTSSITGP-V 183
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
G + Y ASK EL R + V +I PG TE
Sbjct: 184 TGYPGWSHYGASKAAQLGFMRTAAIELA---PRGVTVNAILPGNILTEGLVDMGEEYISG 240
Query: 181 KTPTL------QSEDIADQVVYL 197
++ DI +L
Sbjct: 241 MARSIPMGMLGSPVDIGHLAAFL 263
Score = 41.4 bits (98), Expect = 2e-04
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G +I +SI+G V G + Y ASK EL R + V +I PG
Sbjct: 171 GRVILTSSITGP-VTGYPGWSHYGASKAAQLGFMRTAAIELA---PRGVTVNAILPGNIL 226
Query: 274 TEIFKAANWPVHDPKTPTL------QSEDIADQVVYL 304
TE ++ DI +L
Sbjct: 227 TEGLVDMGEEYISGMARSIPMGMLGSPVDIGHLAAFL 263
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 81.0 bits (201), Expect = 4e-18
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 21/211 (9%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
++V AR + ++++K++E Y G+ D+ E ++ + + + G + V++NN
Sbjct: 28 VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GTIDVVVNN 86
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ + L + +W + ++N+ + +CT+ A + M G IINI S+ G
Sbjct: 87 AGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR--KGRIINIASVVGLIG 144
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
G A YAA+K GV S RE SR I V + PG A+++ D
Sbjct: 145 NI--GQANYAAAKAGVIGFSKTAAREGA---SRNINVNVVCPGFIASDMTAKLG---EDM 196
Query: 181 KTPTLQS---------EDIADQVVYLLKTPA 202
+ L + E++A V +L +PA
Sbjct: 197 EKKILGTIPLGRTGQPENVAGLVEFLALSPA 227
Score = 41.7 bits (99), Expect = 1e-04
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G IINI S+ G G A YAA+K GV S RE SR I V + PG A
Sbjct: 131 GRIINIASVVGLIGNI--GQANYAAAKAGVIGFSKTAAREGA---SRNINVNVVCPGFIA 185
Query: 274 TEIFKAANWPVHDPKTPTLQS---------EDIADQVVYLLKTPAHVQIT 314
+++ D + L + E++A V +L +PA IT
Sbjct: 186 SDMTAKLG---EDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYIT 232
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 81.5 bits (202), Expect = 5e-18
Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 42/242 (17%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ V A ++ + G+ A K D+ E E+ F + E + G + V++NN
Sbjct: 55 VAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW-GRLDVLVNN 113
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ + L + + W+++ ++N+ + +C+R AA+ M +G IINI S+ G
Sbjct: 114 AGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR--SGRIINIASVVGEMG 171
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
P G A Y+A+K GV ++ + +EL SR I V +++PG AT++
Sbjct: 172 NP--GQANYSAAKAGVIGLTKTVAKELA---SRGITVNAVAPGFIATDMTSEL------A 220
Query: 181 KTPTLQS---------EDIADQVVYLLKTPAHVQSMFANNIDNGYIININSISGHRVLPI 231
L+ ++A V +L A + Y I+G V+ I
Sbjct: 221 AEKLLEVIPLGRYGEAAEVAGVVRFL-----------AADPAAAY------ITGQ-VINI 262
Query: 232 DG 233
DG
Sbjct: 263 DG 264
Score = 41.0 bits (97), Expect = 2e-04
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 21/110 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G IINI S+ G P G A Y+A+K GV ++ + +EL SR I V +++PG A
Sbjct: 158 GRIINIASVVGEMGNP--GQANYSAAKAGVIGLTKTVAKELA---SRGITVNAVAPGFIA 212
Query: 274 TEIFKAANWPVHDPKTPTLQS---------EDIADQVVYLLKTPAHVQIT 314
T++ L+ ++A V +L PA IT
Sbjct: 213 TDMTSEL------AAEKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYIT 256
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 80.6 bits (200), Expect = 7e-18
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 21/206 (10%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+VV A E+ ++ E+++ A + D+ N +++ + + + F G V +++NN
Sbjct: 31 VVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF-GQVDILVNN 89
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ + L + E+W + N+ + +CT+ ++ M +G I+NI S+ G
Sbjct: 90 AGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR--HGRIVNIASVVGVTG 147
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
P G A Y A+K GV ++ +EL SR I V +I+PG AT++ + +
Sbjct: 148 NP--GQANYVAAKAGVIGLTKTSAKELA---SRNITVNAIAPGFIATDMTDVLD---ENI 199
Query: 181 KTPTLQS---------EDIADQVVYL 197
K L+ +DIA+ V +
Sbjct: 200 KAEMLKLIPAAQFGEAQDIANAVTFF 225
Score = 41.7 bits (99), Expect = 1e-04
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+NI S+ G P G A Y A+K GV ++ +EL SR I V +I+PG A
Sbjct: 134 GRIVNIASVVGVTGNP--GQANYVAAKAGVIGLTKTSAKELA---SRNITVNAIAPGFIA 188
Query: 274 TEIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
T++ + + K L+ +DIA+ V +
Sbjct: 189 TDMTDVLD---ENIKAEMLKLIPAAQFGEAQDIANAVTFF 225
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 80.7 bits (200), Expect = 8e-18
Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 26/209 (12%)
Query: 7 ARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVG 66
E + K +E ++ AR+ D+R+ + + Q + G + +++ NAG+
Sbjct: 56 LATPEELAATVKLVEDIGSRIVARQADVRDRESLSAALQAGLDEL-GRLDIVVANAGI-- 112
Query: 67 NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPID- 125
AP+++G+ + W ++ +VN+ + + A ++ G I+ I+S +G +
Sbjct: 113 -APMSAGD-DGWHDVIDVNLTGVYHTIKVAIPTLVKQG-TGGSIVLISSSAGLAGVGSAD 169
Query: 126 -GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG-----MTATEIFKAANWPVHD 179
G Y A+KHGV + L I+V SI P M E + +
Sbjct: 170 PGSVGYVAAKHGVVGLMRVYANLLA--GQMIRVNSIHPSGVETPMINNEFTREWLAKMAA 227
Query: 180 PKTPT-----------LQSEDIADQVVYL 197
L ED+A+ V +L
Sbjct: 228 ATDTPGAMGNAMPVEVLAPEDVANAVAWL 256
Score = 51.0 bits (123), Expect = 1e-07
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 20/108 (18%)
Query: 215 GYIININSISGHRVLPID--GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG-- 270
G I+ I+S +G + G Y A+KHGV + L I+V SI P
Sbjct: 151 GSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLA--GQMIRVNSIHPSGV 208
Query: 271 ---MTATEIFKAANWPVHDPKTPT-----------LQSEDIADQVVYL 304
M E + + L ED+A+ V +L
Sbjct: 209 ETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAPEDVANAVAWL 256
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 80.2 bits (199), Expect = 1e-17
Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 21/206 (10%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ V A +E + + +E++ A + ++ + E+ + + F G + V++NN
Sbjct: 31 VAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-GSLDVLVNN 89
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ + L + ++W ++ + N+ + C ++A M +G IIN++S+ G
Sbjct: 90 AGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR--SGAIINLSSVVGAVG 147
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
P G A Y A+K GV ++ + REL SR I V +++PG +++ A + +
Sbjct: 148 NP--GQANYVATKAGVIGLTKSAARELA---SRGITVNAVAPGFIVSDMTDALS---DEL 199
Query: 181 KTPTLQS---------EDIADQVVYL 197
K L DIA+ V +L
Sbjct: 200 KEQMLTQIPLARFGQDTDIANTVAFL 225
Score = 41.3 bits (98), Expect = 2e-04
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G IIN++S+ G P G A Y A+K GV ++ + REL SR I V +++PG
Sbjct: 134 GAIINLSSVVGAVGNP--GQANYVATKAGVIGLTKSAARELA---SRGITVNAVAPGFIV 188
Query: 274 TEIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
+++ A + + K L DIA+ V +L
Sbjct: 189 SDMTDALS---DELKEQMLTQIPLARFGQDTDIANTVAFL 225
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 80.7 bits (200), Expect = 1e-17
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 23/206 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ ++R +++ + E++ + + D+ ++EI + I V +++NNA
Sbjct: 71 VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH-KNVDILVNNA 129
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + + ++W ++ N+ +L T+ ++ M N G IINI+SI G
Sbjct: 130 GITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGLTGN 187
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG-----MTA--TEIFKAA- 173
G A Y++SK GV + +L +EL SR I V +I+PG MT +E K
Sbjct: 188 V--GQANYSSSKAGVIGFTKSLAKELA---SRNITVNAIAPGFISSDMTDKISEQIKKNI 242
Query: 174 --NWPVHDPKTPTLQSEDIADQVVYL 197
N P TP E++A+ +L
Sbjct: 243 ISNIPAGRMGTP----EEVANLACFL 264
Score = 41.0 bits (97), Expect = 3e-04
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 20/101 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG--- 270
G IINI+SI G G A Y++SK GV + +L +EL SR I V +I+PG
Sbjct: 173 GRIINISSIVGLTGNV--GQANYSSSKAGVIGFTKSLAKELA---SRNITVNAIAPGFIS 227
Query: 271 --MTA--TEIFKAA---NWPVHDPKTPTLQSEDIADQVVYL 304
MT +E K N P TP E++A+ +L
Sbjct: 228 SDMTDKISEQIKKNIISNIPAGRMGTP----EEVANLACFL 264
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 80.3 bits (199), Expect = 1e-17
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 21/205 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+G A E + + +Q + +++ + + + + F G ++V++NNA
Sbjct: 55 VIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF-GALNVLVNNA 113
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + + ++W + + N+ A+ +R + M G I+NI S+ G
Sbjct: 114 GITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR--GGRIVNITSVVGSAGN 171
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDPK 181
P G YAA+K GV ++ AL RE+ SR I V ++PG T++ K + +
Sbjct: 172 P--GQVNYAAAKAGVAGMTRALAREIG---SRGITVNCVAPGFIDTDMTKGLP---QEQQ 223
Query: 182 TPTLQS---------EDIADQVVYL 197
T EDIA V +L
Sbjct: 224 TALKTQIPLGRLGSPEDIAHAVAFL 248
Score = 41.0 bits (97), Expect = 3e-04
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+NI S+ G P G YAA+K GV ++ AL RE+ SR I V ++PG
Sbjct: 157 GRIVNITSVVGSAGNP--GQVNYAAAKAGVAGMTRALAREIG---SRGITVNCVAPGFID 211
Query: 274 TEIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
T++ K + +T EDIA V +L
Sbjct: 212 TDMTKGLP---QEQQTALKTQIPLGRLGSPEDIAHAVAFL 248
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 79.5 bits (197), Expect = 2e-17
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 30/170 (17%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRN-EKEILDTFQWIKETFKGGVHVMINN 61
V AR EE +++ DLR + + V +++ N
Sbjct: 46 VTICARNEELLKRSGHRYVV---------CDLRKDLDLLFEKV--------KEVDILVLN 88
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGY--IININSISGH 119
AG E ++ + L + R +M + G+ I+ I S S
Sbjct: 89 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAM----KEKGWGRIVAITSFSV- 143
Query: 120 RVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATE 168
+ PI+ +++ +T L E+ I V ++PG T TE
Sbjct: 144 -ISPIENLYTSNSARMALTGFLKTLSFEVA---PYGITVNCVAPGWTETE 189
Score = 45.6 bits (109), Expect = 7e-06
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+ I S S + PI+ +++ +T L E+ I V ++PG T
Sbjct: 133 GRIVAITSFSV--ISPIENLYTSNSARMALTGFLKTLSFEVA---PYGITVNCVAPGWTE 187
Query: 274 TE 275
TE
Sbjct: 188 TE 189
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 79.1 bits (196), Expect = 2e-17
Identities = 46/204 (22%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
IV+ + ++ A+E + + K D++N +++ + + + F G + +++NN
Sbjct: 32 IVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF-GRIDILVNN 90
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ + + + W ++ N+ + +CT+ ++ M +G IINI SI+G
Sbjct: 91 AGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK--SGKIINITSIAGIIG 148
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
G A YAASK G+ + ++ +E ++ I +++PG+ T++ V +
Sbjct: 149 NA--GQANYAASKAGLIGFTKSIAKEFA---AKGIYCNAVAPGIIKTDMTDVLPDKVKEM 203
Query: 181 ---KTPTL----QSEDIADQVVYL 197
P L E++A+ V +L
Sbjct: 204 YLNNIP-LKRFGTPEEVANVVGFL 226
Score = 40.9 bits (97), Expect = 3e-04
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G IINI SI+G G A YAASK G+ + ++ +E ++ I +++PG+
Sbjct: 135 GKIINITSIAGIIGNA--GQANYAASKAGLIGFTKSIAKEFA---AKGIYCNAVAPGIIK 189
Query: 274 TEIFKAANWPVHDP---KTPTL----QSEDIADQVVYL 304
T++ V + P L E++A+ V +L
Sbjct: 190 TDMTDVLPDKVKEMYLNNIP-LKRFGTPEEVANVVGFL 226
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 78.3 bits (194), Expect = 4e-17
Identities = 43/203 (21%), Positives = 88/203 (43%), Gaps = 15/203 (7%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+V G K ++ + +A + ++ + F +K G + V++NN
Sbjct: 40 VVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEV-GEIDVLVNN 98
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ + E W+ + + N+ +L T++ M G IINI+S++G +
Sbjct: 99 AGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQKG 156
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
G Y+ +K G+ + +L +E+ ++ + V ++SPG T++ KA V +
Sbjct: 157 QF--GQTNYSTAKAGIHGFTMSLAQEVA---TKGVTVNTVSPGYIGTDMVKAIRPDVLEK 211
Query: 181 KTPTL------QSEDIADQVVYL 197
T+ ++I V +L
Sbjct: 212 IVATIPVRRLGSPDEIGSIVAWL 234
Score = 43.3 bits (103), Expect = 4e-05
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G IINI+S++G + G Y+ +K G+ + +L +E+ ++ + V ++SPG
Sbjct: 143 GRIINISSVNGQKGQF--GQTNYSTAKAGIHGFTMSLAQEVA---TKGVTVNTVSPGYIG 197
Query: 274 TEIFKAANWPVHDPKTPTL------QSEDIADQVVYL 304
T++ KA V + T+ ++I V +L
Sbjct: 198 TDMVKAIRPDVLEKIVATIPVRRLGSPDEIGSIVAWL 234
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 77.7 bits (192), Expect = 6e-17
Identities = 54/242 (22%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 19 ELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAPLTSG----- 73
+L + L + D+ E+++ +E + + +++ AG VG A G
Sbjct: 33 DLRREGEDLIYVEGDVTREEDVRRAVARAQE--EAPLFAVVSAAG-VGLAEKILGKEGPH 89
Query: 74 ETEKWRNIYEVNVLALNICTREAAQSMFANSID----NGYIININSISGHRVLPID---G 126
E +R + EVN+L R AA +M N D G I+N S++ + G
Sbjct: 90 GLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAA-----FEGQIG 144
Query: 127 HAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTL- 185
A YAASK GV ++ REL I+V +++PG+ T + + +
Sbjct: 145 QAAYAASKGGVVALTLPAARELAGWG--IRVVTVAPGLFDTPLLQGLPEKAKASLAAQVP 202
Query: 186 ------QSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAA 239
+ E+ A V+++ ++N ++G V+ +DG A+ A
Sbjct: 203 FPPRLGRPEEYAALVLHI--------------LENPM------LNG-EVVRLDG-ALRMA 240
Query: 240 SK 241
+
Sbjct: 241 PR 242
Score = 38.7 bits (91), Expect = 0.001
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 211 NIDNGYIININSISGHRVLPID---GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSI 267
G I+N S++ + G A YAASK GV ++ REL I+V ++
Sbjct: 124 EGQRGVIVNTASVAA-----FEGQIGQAAYAASKGGVVALTLPAARELAGWG--IRVVTV 176
Query: 268 SPGMTATEIFKAANWPVHDPKTPTL-------QSEDIADQVVYLLKTP 308
+PG+ T + + + + E+ A V+++L+ P
Sbjct: 177 APGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENP 224
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 78.0 bits (193), Expect = 7e-17
Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 20/209 (9%)
Query: 3 VVGLARREENIQKMAKELE-------QYPGKLHARKVDLRNEKEILDTFQWIKETFKGGV 55
V Q+ + L G A + D+ + + ++ F
Sbjct: 34 VAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQVQACFSRPP 93
Query: 56 HVMINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININS 115
V+++ AG+ + L + W + VN+ + T+ AAQ++ +N G IINI+S
Sbjct: 94 SVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNG-CRGSIINISS 152
Query: 116 ISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAAN 174
I G G YAASK GV ++ REL I+ S+ PG AT + +
Sbjct: 153 IVGKVGNV--GQTNYAASKAGVIGLTQTAARELG---RHGIRCNSVLPGFIATPMTQKVP 207
Query: 175 WPVHDPKTPTL------QSEDIADQVVYL 197
V D T + ED+AD V +L
Sbjct: 208 QKVVDKITEMIPMGHLGDPEDVADVVAFL 236
Score = 40.6 bits (96), Expect = 3e-04
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G IINI+SI G G YAASK GV ++ REL I+ S+ PG A
Sbjct: 145 GSIINISSIVGKVGNV--GQTNYAASKAGVIGLTQTAARELG---RHGIRCNSVLPGFIA 199
Query: 274 TEIFKAANWPVHDPKTPTL------QSEDIADQVVYL 304
T + + V D T + ED+AD V +L
Sbjct: 200 TPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFL 236
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 78.0 bits (193), Expect = 7e-17
Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 16/204 (7%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ V + R +++ A VD+ + + + + F G V V+INN
Sbjct: 52 VAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF-GKVDVLINN 110
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ +A W + ++ A+ T++ M G I+NI S++G R
Sbjct: 111 AGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR--FGRIVNIGSVNGSRG 168
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDP 180
G A YA++K G+ + L E R I V ++SPG AT + +A V +
Sbjct: 169 AF--GQANYASAKAGIHGFTKTLALETA---KRGITVNTVSPGYLATAMVEAVPQDVLEA 223
Query: 181 KTPTL-------QSEDIADQVVYL 197
K + +++A + +L
Sbjct: 224 KILPQIPVGRLGRPDEVAALIAFL 247
Score = 43.7 bits (104), Expect = 4e-05
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+NI S++G R G A YA++K G+ + L E R I V ++SPG A
Sbjct: 155 GRIVNIGSVNGSRGAF--GQANYASAKAGIHGFTKTLALETA---KRGITVNTVSPGYLA 209
Query: 274 TEIFKAANWPVHDPKTPTL-------QSEDIADQVVYL 304
T + +A V + K + +++A + +L
Sbjct: 210 TAMVEAVPQDVLEAKILPQIPVGRLGRPDEVAALIAFL 247
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 77.2 bits (191), Expect = 1e-16
Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V RE+ ++++A +L + +L + K I + + G+ +++NNA
Sbjct: 54 VGLHGTREDKLKEIAADL---GKDVFVFSANLSDRKSIKQLAEVAEREM-EGIDILVNNA 109
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + + + W ++ VN+ A + TRE SM G IINI SI G
Sbjct: 110 GITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR--YGRIINITSIVGVVGN 167
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG-----MTA--TEIFKAA- 173
P G Y A+K G+ S AL +E+ SR I V I+PG MT E K A
Sbjct: 168 P--GQTNYCAAKAGLIGFSKALAQEIA---SRNITVNCIAPGFIKSAMTDKLNEKQKEAI 222
Query: 174 --NWPVHDPKTPTLQSEDIADQVVYL 197
P+ E+IA VYL
Sbjct: 223 MAMIPMKRMGIG----EEIAFATVYL 244
Score = 44.8 bits (107), Expect = 1e-05
Identities = 37/101 (36%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG--- 270
G IINI SI G P G Y A+K G+ S AL +E+ SR I V I+PG
Sbjct: 153 GRIINITSIVGVVGNP--GQTNYCAAKAGLIGFSKALAQEIA---SRNITVNCIAPGFIK 207
Query: 271 --MTA--TEIFKAA---NWPVHDPKTPTLQSEDIADQVVYL 304
MT E K A P+ E+IA VYL
Sbjct: 208 SAMTDKLNEKQKEAIMAMIPMKRMGIG----EEIAFATVYL 244
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 76.0 bits (188), Expect = 3e-16
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 26/206 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+G A E Q ++ L +++ N + I + I + F GGV +++NNA
Sbjct: 36 VIGTATSESGAQAISDYLG---DNGKGMALNVTNPESIEAVLKAITDEF-GGVDILVNNA 91
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + L + E+W +I E N+ ++ ++ + M G IIN+ S+ G
Sbjct: 92 GITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR--QGRIINVGSVVGTMGN 149
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG-----MTA--TEIFKAA- 173
G A YAA+K GV + ++ RE+ SR + V +++PG MT + + A
Sbjct: 150 A--GQANYAAAKAGVIGFTKSMAREVA---SRGVTVNTVAPGFIETDMTKALNDEQRTAT 204
Query: 174 --NWPVHDPKTPTLQSEDIADQVVYL 197
P P +IA V +L
Sbjct: 205 LAQVPAGRLGDP----REIASAVAFL 226
Score = 42.1 bits (100), Expect = 9e-05
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG--- 270
G IIN+ S+ G G A YAA+K GV + ++ RE+ SR + V +++PG
Sbjct: 135 GRIINVGSVVGTMGNA--GQANYAAAKAGVIGFTKSMAREVA---SRGVTVNTVAPGFIE 189
Query: 271 --MTA--TEIFKAA---NWPVHDPKTPTLQSEDIADQVVYL 304
MT + + A P P +IA V +L
Sbjct: 190 TDMTKALNDEQRTATLAQVPAGRLGDP----REIASAVAFL 226
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 75.6 bits (187), Expect = 4e-16
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 2 IVVGLARREENIQKMAKELEQYPGK-LHARKVDLRNEKEILDTFQWIKETFKGGVHVMIN 60
+ + + E +++A+E + + +L + E GG+ ++N
Sbjct: 28 LAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVL-GGLDTLVN 86
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHR 120
NAG+ + L + E W + E N+ A+ TREA + M G I+NI S+ G
Sbjct: 87 NAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR--FGRIVNITSVVGIL 144
Query: 121 VLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHD 179
P G A Y ASK G+ + A+ +E R I V +++PG TE+ + +
Sbjct: 145 GNP--GQANYVASKAGLIGFTRAVAKEYA---QRGITVNAVAPGFIETEMTERLP---QE 196
Query: 180 PKTPTLQS---------EDIADQVVYL 197
K L+ E++A+ V +L
Sbjct: 197 VKEAYLKQIPAGRFGRPEEVAEAVAFL 223
Score = 40.9 bits (97), Expect = 2e-04
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+NI S+ G P G A Y ASK G+ + A+ +E R I V +++PG
Sbjct: 132 GRIVNITSVVGILGNP--GQANYVASKAGLIGFTRAVAKEYA---QRGITVNAVAPGFIE 186
Query: 274 TEIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
TE+ + + K L+ E++A+ V +L
Sbjct: 187 TEMTERLP---QEVKEAYLKQIPAGRFGRPEEVAEAVAFL 223
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 75.7 bits (187), Expect = 5e-16
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 27/175 (15%)
Query: 12 NIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAPLT 71
+ + +L + D+ +E + + G + +++N AG GNA
Sbjct: 42 RGEDVVADL---GDRARFAAADVTDEAAVASALDLAETM--GTLRIVVNCAG-TGNAIRV 95
Query: 72 SGE-----TEKWRNIYEVNVLALNICTREAAQSMFANSIDN------GYIININSISGHR 120
+R I ++N++ R AA+ + G IIN S++
Sbjct: 96 LSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA-- 153
Query: 121 VLPID---GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKA 172
D G A Y+ASK GV ++ + R+L RI+V +I+PG+ T + +
Sbjct: 154 ---FDGQIGQAAYSASKGGVVGMTLPIARDLA--SHRIRVMTIAPGLFDTPLLAS 203
Score = 37.6 bits (88), Expect = 0.003
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 215 GYIININSISGHRVLPID---GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGM 271
G IIN S++ D G A Y+ASK GV ++ + R+L RI+V +I+PG+
Sbjct: 143 GVIINTASVAA-----FDGQIGQAAYSASKGGVVGMTLPIARDLA--SHRIRVMTIAPGL 195
Query: 272 TATEIFKA 279
T + +
Sbjct: 196 FDTPLLAS 203
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 75.2 bits (186), Expect = 5e-16
Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 24/207 (11%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
V+ E + +A+E+ +Y K H +++L +E+ I F+ I G+ +++NN
Sbjct: 34 VIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLV-DGIDILVNN 92
Query: 62 AGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRV 121
AG+ + W + +VN+ + T+ + + M G I+NI+S+ G
Sbjct: 93 AGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR--WGRIVNISSVVGFTG 150
Query: 122 LPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG-----MTA--TEIFKAA 173
G Y+ +K G+ + +L +EL R + V +++PG MTA +E K
Sbjct: 151 NV--GQVNYSTTKAGLIGFTKSLAKELA---PRNVLVNAVAPGFIETDMTAVLSEEIKQK 205
Query: 174 ---NWPVHDPKTPTLQSEDIADQVVYL 197
P+ +P E++A+ V++L
Sbjct: 206 YKEQIPLGRFGSP----EEVANVVLFL 228
Score = 43.6 bits (104), Expect = 3e-05
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 20/101 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG--- 270
G I+NI+S+ G G Y+ +K G+ + +L +EL R + V +++PG
Sbjct: 137 GRIVNISSVVGFTGNV--GQVNYSTTKAGLIGFTKSLAKELA---PRNVLVNAVAPGFIE 191
Query: 271 --MTA--TEIFKAA---NWPVHDPKTPTLQSEDIADQVVYL 304
MTA +E K P+ +P E++A+ V++L
Sbjct: 192 TDMTAVLSEEIKQKYKEQIPLGRFGSP----EEVANVVLFL 228
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 73.7 bits (182), Expect = 2e-15
Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 21/202 (10%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+V E +++ A+ + H +D+ + + F G + +++ A
Sbjct: 32 LVACDIEEGPLREAAEAV-----GAHPVVMDVADPASVERGFAEALAHL-GRLDGVVHYA 85
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + E W + VN+ + + A+++M + G I+ S L
Sbjct: 86 GITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN--PGSIVLTASRVY---L 140
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDPK 181
G A YAAS GV ++ L EL I+V +++PG T + V +
Sbjct: 141 GNLGQANYAASMAGVVGLTRTLALELG---RWGIRVNTLAPGFIETRMTAKVPEKVREKA 197
Query: 182 TPTL------QSEDIADQVVYL 197
+ ++A ++L
Sbjct: 198 IAATPLGRAGKPLEVAYAALFL 219
Score = 40.2 bits (95), Expect = 5e-04
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G I+ S L G A YAAS GV ++ L EL I+V +++PG
Sbjct: 129 GSIVLTASRVY---LGNLGQANYAASMAGVVGLTRTLALELG---RWGIRVNTLAPGFIE 182
Query: 274 TEIFKAANWPVHDPKTPTL------QSEDIADQVVYL 304
T + V + + ++A ++L
Sbjct: 183 TRMTAKVPEKVREKAIAATPLGRAGKPLEVAYAALFL 219
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 73.1 bits (180), Expect = 3e-15
Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 63/231 (27%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
+VG+ R+ + DL + + G+ ++ A
Sbjct: 28 IVGIDIRDAEVI-----------------ADLSTAEGRKQAIADVLAKCSKGMDGLVLCA 70
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
GL +T+ N+ VN ++ + I+S++ +
Sbjct: 71 GL-------GPQTKVLGNVVSVNYFGATELMDAFLPALKKG--HQPAAVVISSVASAHLA 121
Query: 123 --------------------------PIDGHAMYAASKHGVTVISDALRRELVNKKSRIK 156
G+ YA SK+ +TV ++ ++
Sbjct: 122 FDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWG--EAGVR 179
Query: 157 VTSISPGMTATEIFKA------ANWPVHDPKTPTL---QSEDIADQVVYLL 198
+ +I+PG T T + +A + P + ++A + +L+
Sbjct: 180 LNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIAFLM 230
Score = 47.3 bits (113), Expect = 2e-06
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G +I H G+ YA SK+ +TV ++ +++ +I+PG T T
Sbjct: 134 GEEAKARAIVEHAG-EQGGNLAYAGSKNALTVAVRKRAAAWG--EAGVRLNTIAPGATET 190
Query: 275 EIFKA------ANWPVHDPKTPTL---QSEDIADQVVYLL 305
+ +A + P + ++A + +L+
Sbjct: 191 PLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIAFLM 230
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 71.8 bits (177), Expect = 8e-15
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 30/206 (14%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ EE ++ + L +L N++E + + +++ NA
Sbjct: 41 VIISGSNEEKLKSLGNAL---KDNYTIEVCNLANKEECSNLI----SKT-SNLDILVCNA 92
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + + + + + ++N+ A I REA + M G IINI+SI G
Sbjct: 93 GITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKR--YGRIINISSIVGIAGN 150
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG-----MTA--TEIFKAA- 173
P G A Y ASK G+ ++ +L E+ +R I V +++PG MT E + A
Sbjct: 151 P--GQANYCASKAGLIGMTKSLSYEVA---TRGITVNAVAPGFIKSDMTDKLNEKQREAI 205
Query: 174 --NWPVHDPKTPTLQSEDIADQVVYL 197
P+ P ED+A V +L
Sbjct: 206 VQKIPLGTYGIP----EDVAYAVAFL 227
Score = 45.2 bits (108), Expect = 9e-06
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 20/101 (19%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG--- 270
G IINI+SI G P G A Y ASK G+ ++ +L E+ +R I V +++PG
Sbjct: 136 GRIINISSIVGIAGNP--GQANYCASKAGLIGMTKSLSYEVA---TRGITVNAVAPGFIK 190
Query: 271 --MTA--TEIFKAA---NWPVHDPKTPTLQSEDIADQVVYL 304
MT E + A P+ P ED+A V +L
Sbjct: 191 SDMTDKLNEKQREAIVQKIPLGTYGIP----EDVAYAVAFL 227
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 71.1 bits (175), Expect = 1e-14
Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 27/212 (12%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDT-----FQWIKETFKGGVHV 57
V+G+ R + +I +L G+ A L +LD + G+ V
Sbjct: 28 VIGIDRGQADI---EADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVGVTAAN-SGLVV 83
Query: 58 MINNAGLVG--NAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININS 115
+N G+ + + + V +A + A G
Sbjct: 84 AVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAM--LAGDEARAIE 141
Query: 116 ISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANW 175
++ H YA SK+ VT ++ + +++ ++PG T + +A+
Sbjct: 142 LAE---QQGQTHLAYAGSKYAVTCLARRNVVDWA--GRGVRLNVVAPGAVETPLLQASKA 196
Query: 176 PVHDPKTPTL---------QSEDIADQVVYLL 198
++ + ++A+ + +LL
Sbjct: 197 DPRYGESTRRFVAPLGRGSEPREVAEAIAFLL 228
Score = 47.6 bits (114), Expect = 2e-06
Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 274
G ++ H YA SK+ VT ++ + +++ ++PG T
Sbjct: 134 GDEARAIELAE---QQGQTHLAYAGSKYAVTCLARRNVVDWA--GRGVRLNVVAPGAVET 188
Query: 275 EIFKAANWPVHDPKTPTL---------QSEDIADQVVYLL 305
+ +A+ ++ + ++A+ + +LL
Sbjct: 189 PLLQASKADPRYGESTRRFVAPLGRGSEPREVAEAIAFLL 228
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 71.2 bits (175), Expect = 2e-14
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 21/181 (11%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKG-GVHVMINN 61
+ R E ++ ++L + +H ++DLRN I+ K G++V+ NN
Sbjct: 51 LFTTCRNREQAKE-LEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNN 109
Query: 62 AG-LVGNAPLTSGETEKWRNIYEVNVLALNICTR---------EAAQSMFANSIDNGYII 111
AG +A +T+ +++ + + N + + + A + II
Sbjct: 110 AGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAII 169
Query: 112 NI----NSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTAT 167
N+ SI G+ G Y SK + + +L +L RI S+ PG T
Sbjct: 170 NMSSILGSIQGN---TDGGMYAYRTSKSALNAATKSLSVDL--YPQRIMCVSLHPGWVKT 224
Query: 168 E 168
+
Sbjct: 225 D 225
Score = 37.0 bits (86), Expect = 0.005
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 197 LLKTPAHVQSMFANNIDNGYIINI----NSISGHRVLPIDGHAMYAASKHGVTVISDALR 252
LLK A + IIN+ SI G+ G Y SK + + +L
Sbjct: 148 LLKKAAKANESQPMGVGRAAIINMSSILGSIQGN---TDGGMYAYRTSKSALNAATKSLS 204
Query: 253 RELVNKKSRIKVTSISPGMTATE 275
+L RI S+ PG T+
Sbjct: 205 VDL--YPQRIMCVSLHPGWVKTD 225
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 71.6 bits (176), Expect = 2e-14
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 49 ETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDN- 107
ETF GG+ V++NNAG+V + + + E++ + V++ R AA S
Sbjct: 110 ETF-GGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGK 168
Query: 108 ---GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG- 163
G IIN +S +G + G Y+A+K G+ ++ E+ + + V +I+P
Sbjct: 169 AVDGRIINTSSGAG--LQGSVGQGNYSAAKAGIATLTLVGAAEM--GRYGVTVNAIAPSA 224
Query: 164 ---MTATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 197
MT T A D + E+++ VV+L
Sbjct: 225 RTRMTET--VFAEMMATQDQDFDAMAPENVSPLVVWL 259
Score = 44.7 bits (106), Expect = 2e-05
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG---- 270
G IIN +S +G + G Y+A+K G+ ++ E+ + + V +I+P
Sbjct: 172 GRIINTSSGAG--LQGSVGQGNYSAAKAGIATLTLVGAAEM--GRYGVTVNAIAPSARTR 227
Query: 271 MTATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 304
MT T A D + E+++ VV+L
Sbjct: 228 MTET--VFAEMMATQDQDFDAMAPENVSPLVVWL 259
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 70.7 bits (174), Expect = 3e-14
Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 19/207 (9%)
Query: 2 IVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINN 61
+ V ++ M + + +L + D+ ++++ + F G + +INN
Sbjct: 34 VTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHF-GKIDFLINN 92
Query: 62 AGLVGN--APLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIINI--NSIS 117
AG L E ++W + + N+ A+ + M + G IIN
Sbjct: 93 AGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN--FGRIINYGFQGAD 150
Query: 118 GHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWP 176
+ +AA+K G+ ++ + E I + PG E+ +A
Sbjct: 151 SAPGWI--YRSAFAAAKVGLVSLTKTVAYEEA---EYGITANMVCPGDIIGEMKEATIQE 205
Query: 177 VHDPKTPTL------QSEDIADQVVYL 197
K EDIA + +L
Sbjct: 206 ARQLKEHNTPIGRSGTGEDIARTISFL 232
Score = 36.0 bits (84), Expect = 0.009
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 14/99 (14%)
Query: 215 GYIINI--NSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGM 271
G IIN + +AA+K G+ ++ + E I + PG
Sbjct: 139 GRIINYGFQGADSAPGWI--YRSAFAAAKVGLVSLTKTVAYEEA---EYGITANMVCPGD 193
Query: 272 TATEIFKAANWPVHDPKTPTL------QSEDIADQVVYL 304
E+ +A K EDIA + +L
Sbjct: 194 IIGEMKEATIQEARQLKEHNTPIGRSGTGEDIARTISFL 232
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 72.0 bits (177), Expect = 3e-14
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 49 ETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNG 108
+ F G VHV+INNAG++ +A + + ++ + +V++ T+ A G
Sbjct: 87 KNF-GTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK--YG 143
Query: 109 YIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG----M 164
I+N +S +G + G A YA++K + ++ L +E K IK +I+P M
Sbjct: 144 RIVNTSSPAG--LYGNFGQANYASAKSALLGFAETLAKEG--AKYNIKANAIAPLARSRM 199
Query: 165 TATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 197
T + I P E +A V+YL
Sbjct: 200 TES-IMPPPMLEKLGP-------EKVAPLVLYL 224
Score = 70.5 bits (173), Expect = 1e-13
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 19/153 (12%)
Query: 49 ETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNG 108
+ + G + +++NNAG++ + ++W ++ +V+++ +R A G
Sbjct: 391 DKY-GTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ--FG 447
Query: 109 YIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG----M 164
IINI S SG + G A Y++SK G+ +S + E K+ IKV ++P M
Sbjct: 448 RIINITSTSG--IYGNFGQANYSSSKAGILGLSKTMAIEG--AKNNIKVNIVAPHAETAM 503
Query: 165 TATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 197
T + I + + ++ + +A +VYL
Sbjct: 504 TLS-IMREQDKNLYHA-------DQVAPLLVYL 528
Score = 41.6 bits (98), Expect = 2e-04
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG---- 270
G I+N +S +G + G A YA++K + ++ L +E K IK +I+P
Sbjct: 143 GRIVNTSSPAG--LYGNFGQANYASAKSALLGFAETLAKEG--AKYNIKANAIAPLARSR 198
Query: 271 MTATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 304
MT + I P E +A V+YL
Sbjct: 199 MTES-IMPPPMLEKLGP-------EKVAPLVLYL 224
Score = 40.1 bits (94), Expect = 8e-04
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG---- 270
G IINI S SG + G A Y++SK G+ +S + E K+ IKV ++P
Sbjct: 447 GRIINITSTSG--IYGNFGQANYSSSKAGILGLSKTMAIEG--AKNNIKVNIVAPHAETA 502
Query: 271 MTATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 304
MT + I + + ++ + +A +VYL
Sbjct: 503 MTLS-IMREQDKNLYHA-------DQVAPLLVYL 528
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 70.5 bits (173), Expect = 6e-14
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 19/160 (11%)
Query: 49 ETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNG 108
+TF G + V++NNAG++ + + E W I V++ TR A M + G
Sbjct: 88 DTF-GRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YG 144
Query: 109 YIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG----M 164
II S SG + G A Y+A+K G+ +++ L E +K+ I +I+P M
Sbjct: 145 RIIMTASASG--IYGNFGQANYSAAKLGLLGLANTLVIEG--RKNNIHCNTIAPNAGSRM 200
Query: 165 TATEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHV 204
T T + P E +A V++L
Sbjct: 201 TET-VMPEDLVEALKP-------EYVAPLVLWLCHESCEE 232
Score = 40.4 bits (95), Expect = 5e-04
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG---- 270
G II S SG + G A Y+A+K G+ +++ L E +K+ I +I+P
Sbjct: 144 GRIIMTASASG--IYGNFGQANYSAAKLGLLGLANTLVIEG--RKNNIHCNTIAPNAGSR 199
Query: 271 MTATEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHV 311
MT T + P E +A V++L
Sbjct: 200 MTET-VMPEDLVEALKP-------EYVAPLVLWLCHESCEE 232
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 69.3 bits (170), Expect = 7e-14
Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 23/183 (12%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTFQWIKETFKG-GVHVMIN 60
++ AR E A EL ++H + + +K + + E G+ ++IN
Sbjct: 32 IIATARDVEK----ATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLIN 87
Query: 61 NAG-LVGNAPLTSGETEKWRNIYEVNVLALNICTR---------EAAQSMFANSIDNGYI 110
NAG L+ T +VN ++ + T+ + +S S+ +
Sbjct: 88 NAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAV 147
Query: 111 ININSISGHRVLPIDGHAM-----YAASKHGVTVISDALRRELVNKKSRIKVTSISPGMT 165
I I+S G G A Y SK + + L +L K + V + PG
Sbjct: 148 ITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDL--KDDNVLVVNFCPGWV 205
Query: 166 ATE 168
T
Sbjct: 206 QTN 208
Score = 35.4 bits (82), Expect = 0.014
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 197 LLKTPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAM-----YAASKHGVTVISDAL 251
LLK A +S ++ +I I+S G G A Y SK + + L
Sbjct: 127 LLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTL 186
Query: 252 RRELVNKKSRIKVTSISPGMTATE 275
+L K + V + PG T
Sbjct: 187 AVDL--KDDNVLVVNFCPGWVQTN 208
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 69.5 bits (171), Expect = 8e-14
Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 25/200 (12%)
Query: 10 EENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGL-VGNA 68
E + + + +E+ K DL +E+ D Q G +++++NN
Sbjct: 82 EGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL-GSLNILVNNVAQQYPQQ 140
Query: 69 PLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDGHA 128
L E+ + +N+ + T+ A + IIN SI +G+
Sbjct: 141 GLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ----GDVIINTASIVA-----YEGNE 191
Query: 129 M---YAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEI----FKAANWPVHDPK 181
Y+A+K + + +L + LV K I+V ++PG T + F
Sbjct: 192 TLIDYSATKGAIVAFTRSLSQSLVQKG--IRVNGVAPGPIWTPLIPSSFDEKKVSQFGSN 249
Query: 182 TPTL----QSEDIADQVVYL 197
P + Q ++A VYL
Sbjct: 250 VP-MQRPGQPYELAPAYVYL 268
Score = 38.3 bits (90), Expect = 0.002
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 215 GYIININSISGHRVLPIDGHAM---YAASKHGVTVISDALRRELVNKKSRIKVTSISPGM 271
IIN SI +G+ Y+A+K + + +L + LV K I+V ++PG
Sbjct: 176 DVIINTASIVA-----YEGNETLIDYSATKGAIVAFTRSLSQSLVQKG--IRVNGVAPGP 228
Query: 272 TATEI----FKAANWPVHDPKTPTL----QSEDIADQVVYL 304
T + F P + Q ++A VYL
Sbjct: 229 IWTPLIPSSFDEKKVSQFGSNVP-MQRPGQPYELAPAYVYL 268
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 67.8 bits (166), Expect = 3e-13
Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 55/236 (23%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV AR Q ++L+ ++D+ + + I ++++ + GG+ V++NNA
Sbjct: 32 VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-GGLDVLVNNA 90
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + + + N TR+ + G ++N++SI R L
Sbjct: 91 GIAFKVADPTPFHIQAEVTMKTNFFG----TRDVCTELLPLIKPQGRVVNVSSIMSVRAL 146
Query: 123 PIDGHAM---------------------------------------YAASKHGVTVISDA 143
+ Y +K GVTV+S
Sbjct: 147 KSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRI 206
Query: 144 LRREL--VNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTLQSEDIADQVVYL 197
R+L K +I + + PG T++ K+P E+ A+ VYL
Sbjct: 207 HARKLSEQRKGDKILLNACCPGWVRTDMAGP-----KATKSP----EEGAETPVYL 253
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 68.9 bits (169), Expect = 4e-13
Identities = 42/217 (19%), Positives = 84/217 (38%), Gaps = 47/217 (21%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV + + + + ++ G A +D+ + + + E G V +++NNA
Sbjct: 240 VVAIDVDGAA-EDLKRVADKVGGT--ALTLDVTADDAVDKITAHVTEHHGGKVDILVNNA 296
Query: 63 GLVGNAPLTSGET----------EKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIIN 112
G+ T ++W + VN+LA T + + G +I
Sbjct: 297 GI----------TRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIG--EGGRVIG 344
Query: 113 INSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG-----MTA 166
++S++G G YA +K G+ +++AL L + I + +++PG MT
Sbjct: 345 LSSMAGIAGNR--GQTNYATTKAGMIGLAEALAPVL---ADKGITINAVAPGFIETKMTE 399
Query: 167 T------EIFKAANWPVHDPKTPTLQSEDIADQVVYL 197
E+ + N + P D+A+ + Y
Sbjct: 400 AIPLATREVGRRLN-SLFQGGQP----VDVAELIAYF 431
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 22/104 (21%)
Query: 213 DNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPG- 270
+ G +I ++S++G G YA +K G+ +++AL L + I + +++PG
Sbjct: 338 EGGRVIGLSSMAGIAGNR--GQTNYATTKAGMIGLAEALAPVL---ADKGITINAVAPGF 392
Query: 271 ----MTAT------EIFKAANWPVHDPKTPTLQSEDIADQVVYL 304
MT E+ + N + P D+A+ + Y
Sbjct: 393 IETKMTEAIPLATREVGRRLN-SLFQGGQP----VDVAELIAYF 431
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 66.8 bits (164), Expect = 4e-13
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 21/184 (11%)
Query: 24 PGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYE 83
P L +VD+ + + F ++E G V V+++NAGL +A L EK+ +
Sbjct: 52 PKGLFGVEVDVTDSDAVDRAFTAVEEHQ-GPVEVLVSNAGLSADAFLMRMTEEKFEKVIN 110
Query: 84 VNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDGHAMYAASKHGVTVISDA 143
N+ + A++SM N G +I I S+SG + A YAASK GV ++ +
Sbjct: 111 ANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLWGIG--NQANYAASKAGVIGMARS 166
Query: 144 LRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDPKTPTLQS---------EDIADQ 193
+ REL + ++PG T++ +A + + LQ ++A
Sbjct: 167 IARELS---KANVTANVVAPGYIDTDMTRALD---ERIQQGALQFIPAKRVGTPAEVAGV 220
Query: 194 VVYL 197
V +L
Sbjct: 221 VSFL 224
Score = 42.1 bits (100), Expect = 1e-04
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G +I I S+SG + A YAASK GV ++ ++ REL + ++PG
Sbjct: 133 GRMIFIGSVSGLWGIG--NQANYAASKAGVIGMARSIARELS---KANVTANVVAPGYID 187
Query: 274 TEIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
T++ +A + + LQ ++A V +L
Sbjct: 188 TDMTRALD---ERIQQGALQFIPAKRVGTPAEVAGVVSFL 224
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 68.3 bits (167), Expect = 5e-13
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 49 ETFKGGVHVMINNAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNG 108
+ F G V +++NNAG++ + L + W + +V++ CT+ A M + G
Sbjct: 98 KAF-GRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQN--YG 154
Query: 109 YIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG----M 164
II +S SG G Y A+K G+ +++ + E ++ + I P M
Sbjct: 155 RIIMTSSNSGI--YGNFGQVNYTAAKMGLIGLANTVAIEG--ARNNVLCNVIVPTAASRM 210
Query: 165 TATEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHV 204
T I + P + IA V YL
Sbjct: 211 TEG-ILPDILFNELKP-------KLIAPVVAYLCHESCED 242
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 66.4 bits (163), Expect = 6e-13
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 32/205 (15%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V R E P A K D+ + +++ ++ I+ET G V V+I NA
Sbjct: 48 VAITYRSGEP-----------PEGFLAVKCDITDTEQVEQAYKEIEETH-GPVEVLIANA 95
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVL 122
G+ + L E + ++ E N+ + A ++M G ++ I+S+ G +L
Sbjct: 96 GVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK--KGRVVLISSVVG--LL 151
Query: 123 PIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTATEIFKAANWPVHDPK 181
G A YAASK G+ + +L REL SR I ++PG T++ K + +
Sbjct: 152 GSAGQANYAASKAGLVGFARSLARELG---SRNITFNVVAPGFVDTDMTKVLT---DEQR 205
Query: 182 TPTLQS---------EDIADQVVYL 197
+ E+IA V +L
Sbjct: 206 ANIVSQVPLGRYARPEEIAATVRFL 230
Score = 42.2 bits (100), Expect = 9e-05
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 215 GYIININSISGHRVLPIDGHAMYAASKHGVTVISDALRRELVNKKSR-IKVTSISPGMTA 273
G ++ I+S+ G +L G A YAASK G+ + +L REL SR I ++PG
Sbjct: 139 GRVVLISSVVG--LLGSAGQANYAASKAGLVGFARSLARELG---SRNITFNVVAPGFVD 193
Query: 274 TEIFKAANWPVHDPKTPTLQS---------EDIADQVVYL 304
T++ K + + + E+IA V +L
Sbjct: 194 TDMTKVLT---DEQRANIVSQVPLGRYARPEEIAATVRFL 230
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 65.0 bits (158), Expect = 4e-12
Identities = 47/309 (15%), Positives = 99/309 (32%), Gaps = 64/309 (20%)
Query: 3 VVGLARREENIQKMAKEL-EQYPGKLHARKVDLRNEKEILDTF-QWIKETFKGGVHVMIN 60
VV R + ++L + ++D+ + + + +IK F G + +++N
Sbjct: 39 VVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF-GKLDILVN 97
Query: 61 NAGLVGNAPLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNG-YIININSISGH 119
NAG+ G + +I E + + I + AQ + + + + + IN
Sbjct: 98 NAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVK 157
Query: 120 RV----LPIDGHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANW 175
V +P+ + V V S + V+ ++ +++ +T I N
Sbjct: 158 SVTEVLIPLLQLSDSP---RIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNM 214
Query: 176 PVHDPKTPTLQSEDIADQVVYLLKTPAHVQSMFANNIDNGYIININSISGHRVLPIDGHA 235
+ D K +++ A
Sbjct: 215 LLKDFKENLIETNGWP----------------------------------------SFGA 234
Query: 236 MYAASKHGVTVISDALRRELVNKKSRIKVTSISPGMTATEIFKAANWPVHDPKTPTLQSE 295
Y SK + + L ++ +V + PG+ TE+ T E
Sbjct: 235 AYTTSKACLNAYTRVLANKIPK----FQVNCVCPGLVKTEMNYGIG-----NYTA----E 281
Query: 296 DIADQVVYL 304
+ A+ VV +
Sbjct: 282 EGAEHVVRI 290
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 3e-06
Identities = 44/352 (12%), Positives = 96/352 (27%), Gaps = 132/352 (37%)
Query: 9 REENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNA 68
R + K+ + L + LR K +L + G++G
Sbjct: 133 RLQPYLKLRQALLE-----------LRPAKNVL-------------ID------GVLG-- 160
Query: 69 PLTSGETEKWRNIYEVNVLALNICTREAAQSMFANSIDNGYIININSISGHRVLPIDGHA 128
SG K +AL++C Q I + +N+ + + +
Sbjct: 161 ---SG---KT-------WVALDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQK 204
Query: 129 MYAASKHGVTVISD---ALRRELVNKKSRIKVTSISPGMTATEIFKAANWP--------V 177
+ T SD ++ + + ++ ++ + K+ + V
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----------RLLKSKPYENCLLVLLNV 253
Query: 178 HDPKT--------PTL---QSEDIADQV-------VYLLK-----TPAHVQSMFANNIDN 214
+ K L + + + D + + L TP V+S+ +D
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD- 312
Query: 215 GYIININSISGHRVLP---IDGH----AMYAASKHGVTVISDALRRELVNKKSRIKVTSI 267
LP + + ++ A S D + +K + I +S+
Sbjct: 313 ---CRPQD------LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 268 SPGMTATEIFKAANWPVHDPKTPTLQSEDIADQVVYLLKTPAHVQITELTIV 319
+ L+ + L P I + +
Sbjct: 364 N----------------------VLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 60/413 (14%), Positives = 119/413 (28%), Gaps = 162/413 (39%)
Query: 27 LH--ARKVDLRNEKEILDTFQWIKETFKGGVHVMI-----NNAGLV-----GNAPLTS-- 72
+H A K+ N+ ++ T + IK + +N+ L GNA L +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 73 ---GETEKW----RNIYEV-------------NVLALNICTREAAQSMFANSID------ 106
G T+ + R++Y+ L+ I T A+ +F ++
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 107 -------NGYIININSISGHRVLPIDG-----HAMYAASKHGVTV--ISDALRRELVNKK 152
Y+++I IS P+ G H + A G T + L+ + +
Sbjct: 221 NPSNTPDKDYLLSI-PIS----CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 153 SRIKVTSISPGMTATEIFKAAN-------W---------PV-------------HDPKTP 183
+ +I+ + F + + P ++ P
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 184 T--LQSEDIADQVV--YLLKTPAHVQSMFANNIDNGYIININS-----ISG--------- 225
+ L ++ + V Y+ KT +H+ + + I +N +SG
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPA--GKQV---EISLVNGAKNLVVSGPPQSLYGLN 390
Query: 226 ---------------------------HRVLPIDG--HAMY---AASKHGVTVISDALRR 253
+R LP+ H+ A+ + D ++
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL----INKDLVKN 446
Query: 254 ELVNKKSRIKV---------------TSISPGMTATEIFKAANWPVHDPKTPT 291
+ I++ SIS + I W T
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 32.2 bits (73), Expect = 0.22
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 84 VNVLALNICTREAAQSMF--ANSIDNGYIININSISG--HRVLPIDGHAMYAASKHGVTV 139
+ + + RE A D ++ + + G +R + + + V
Sbjct: 541 ITIFQQGVQNREDFAKALEIAFREDKEVMVE-DYLVGTEYRFFVLGDETLAVLLRVPANV 599
Query: 140 ISDALR--RELVNKKSR 154
+ D++ ELV K+
Sbjct: 600 VGDSVHSVAELVAMKND 616
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.26
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 7 ARREENIQKMAKELE----QYPGKLHARKVDLRNEKEILDTFQWIKE 49
+E +K K+LE + ++ K++ R + + ++
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK-----AFYQQ 148
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 31.0 bits (71), Expect = 0.47
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 11 ENIQKMAKELEQYPGKLHAR-------KVDLRNEKEILDTFQWIKETFKGGVHVM 58
++ + +EL +Y +L R K+D+ E L+ F KE V
Sbjct: 256 DDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAF---KEKLTDDYPVF 307
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 28.7 bits (64), Expect = 2.2
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
VV R+ + Q A + + ++ + ++ + G H +
Sbjct: 146 VVLCGRKLDKAQAAADSVNKRFK-VNVTAAETADDASRAEAV--------KGAHFVFTAG 196
Query: 63 GLVGNAPLTSGETEKWRNIYEVNVLA 88
L W+N + ++A
Sbjct: 197 A----IGLELLPQAAWQNESSIEIVA 218
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 28.7 bits (65), Expect = 2.6
Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 43/194 (22%)
Query: 3 VVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNA 62
V+ R + +K G++ R++DL++ + F + G V+INNA
Sbjct: 43 VIMAVR---DTRKGEAAARTMAGQVEVRELDLQDLSSV-RRF---ADGVSG-ADVLINNA 94
Query: 63 GLVGNAPLTSGETEKWRNIYE----VNVL---ALNICTREAAQSMFANSIDNGYIININS 115
G + P T + +E N L AL ++ ++S
Sbjct: 95 G-IMAVPYA--LTV---DGFESQIGTNHLGHFALTNLLLPRLTDR---------VVTVSS 139
Query: 116 ISGHRVLPID------------GHAMYAASKHGVTVISDALRRELVNKKSRIKVTSISPG 163
+ H I+ Y+ SK + + L+R L S ++ + PG
Sbjct: 140 M-AHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPG 198
Query: 164 MTATEIFKAANWPV 177
+ T + A+ +
Sbjct: 199 YSHTNLQGASGRKL 212
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 28.6 bits (63), Expect = 3.3
Identities = 10/68 (14%), Positives = 21/68 (30%)
Query: 10 EENIQKMAKELEQYPGKLHARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAP 69
N K + + D ++ + IK G V +++ +
Sbjct: 108 WYNSAAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKL 167
Query: 70 LTSGETEK 77
SGE ++
Sbjct: 168 PGSGEVKR 175
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 26.2 bits (58), Expect = 3.7
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1 MIVVGLARREENIQKMAKELEQYPGKLHARKVDLRNEKE 39
++++G REE K+ +ELE +L L +EK+
Sbjct: 9 LVLLGEQFREE--YKLTQELEMLTDRLQLTLRALEDEKK 45
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia
haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Length = 320
Score = 27.8 bits (62), Expect = 5.1
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 29 ARKVDLRNEKEILDTFQWIKETFKGGVHVMINNAGLVGNAP 69
+ +D +K + + + G H I+ + ++P
Sbjct: 201 GKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSP 241
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein
fermentation; 2.50A {Acidaminococcus fermentans} SCOP:
c.124.1.3
Length = 260
Score = 27.6 bits (61), Expect = 5.1
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 10/103 (9%)
Query: 200 TPAHVQSMFANNIDNGYIININSISGHRVLPIDGHAMYAASKHGVT-VISDALRRELVNK 258
H + F N ID + G P + G V++D + K
Sbjct: 148 MMQHEKRRFMNKID------YVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEK 201
Query: 259 KSRIKVTSISPGMTATEIFKAANWPVH---DPKTPTLQSEDIA 298
R+ + + P + ++ + + + + I
Sbjct: 202 TKRMYLAAYYPTSSPEDVLENTGFDLDVSKAVELEAPDPAVIK 244
Score = 27.2 bits (60), Expect = 6.2
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 111 ININSISGHRVLPIDGHAMYAASKHGVT-VISDALRRELVNKKSRIKVTSISPGMTATEI 169
I+ + G P + G V++D + K R+ + + P + ++
Sbjct: 160 IDYVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPTSSPEDV 219
Query: 170 FKAANWPVH---DPKTPTLQSEDIA 191
+ + + + I
Sbjct: 220 LENTGFDLDVSKAVELEAPDPAVIK 244
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5*
3m9s_5*
Length = 207
Score = 27.0 bits (60), Expect = 8.1
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 140 ISDALRRELVNKKSRIKVTSISPGM---TATEIFKAANW 175
+S ++ + ++V T T+++ +AN+
Sbjct: 75 VSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANF 113
Score = 27.0 bits (60), Expect = 8.1
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 247 ISDALRRELVNKKSRIKVTSISPGM---TATEIFKAANW 282
+S ++ + ++V T T+++ +AN+
Sbjct: 75 VSLPGWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANF 113
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 27.2 bits (61), Expect = 8.4
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 38 KEILDTFQWIKETFKGGVHVMINNAGLVGNAPLTSGETEKWR 79
K+ L + ++ K++ + L G ++ E+W
Sbjct: 46 KKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 27.2 bits (60), Expect = 9.5
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 89 LNICTREAAQSMF--ANSIDNGYIININSISG--HRVLPIDGHAMYAASKHGVTVISDAL 144
+ + A + D+ ++ I G +R ++G + + V+ D +
Sbjct: 540 KTSANLASYEKAIDIAFTEDSAILVE-EYIEGTEYRFFVLEGDCIAVLLRVAANVVGDGI 598
Query: 145 R--RELVNKKSR 154
+LV K++
Sbjct: 599 HTISQLVKLKNQ 610
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,952,537
Number of extensions: 299686
Number of successful extensions: 2367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 412
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)