RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6644
(125 letters)
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 167 bits (425), Expect = 4e-53
Identities = 56/114 (49%), Positives = 76/114 (66%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
F + GVD+ INNAG+ L ++ W+ + +VNV+ALS CTREA +SMK R
Sbjct: 102 FSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERN 161
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVT 117
VDDGHII+INS++GHR+ L YSA+K+AVT L EGLR+EL ++ I+ T
Sbjct: 162 VDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRAT 215
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 128 bits (323), Expect = 4e-38
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 9 RNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGH 68
+N VD L++ A V + + +W LD+NVI + +R+ L +++ G
Sbjct: 71 KNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS---GC 127
Query: 69 IIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+I+INS AG+ Y+ASKHA+ LA+ R+E A+ I+V+
Sbjct: 128 VIYINSGAGNGPHPGNTI--YAASKHALRGLADAFRKEEANNG--IRVST 173
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 121 bits (306), Expect = 8e-36
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
F G +++++ AG P+ +E RR+++ N+++ ++ ++ + RG
Sbjct: 68 FAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG 127
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G + ++ S A + Y ASK + E LR EL +++
Sbjct: 128 ---GVLANVLSSAAQVGKANESL--YCASKWGMRGFLESLRAELKDSP--LRLVN 175
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 118 bits (299), Expect = 1e-34
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
V FG VDV++ NAG+ L E + E++ +++VN++ + + L S+K G
Sbjct: 71 SKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG 130
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
++ + ++ ++ Y ++K A L + E ++
Sbjct: 131 --GLALVTTSDVSAR---LIPYGGGYVSTKWAARALVRTFQIE----NPDVRFFE 176
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 117 bits (296), Expect = 5e-34
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+G +DVL+NNAGV +PL+ ++W R++DVN+ + L M+ +
Sbjct: 72 AQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR 131
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G II+I SI ++ +Y A+K AV +++GLR+E + I+VT
Sbjct: 132 --SGQIINIGSIGALS--VVPTAAVYCATKFAVRAISDGLRQE----STNIRVTC 178
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 116 bits (293), Expect = 7e-34
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
FG + L+NNAGV V P+ E E+WR +LD N+ R A+ ++ RG G I+
Sbjct: 76 FGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG--GGTIV 133
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
++ S+AG +G Y+ASK + LA +L ++V
Sbjct: 134 NVGSLAGKN--PFKGGAAYNASKFGLLGLAGAAMLDLREAN--VRVVN 177
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 116 bits (294), Expect = 8e-34
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+++ +G VD+L+N A + + L +++R+I+++NVIA + + MK +
Sbjct: 78 IKDIHQKYGAVDILVNAAAMFMDGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK 136
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+G+I ++ S A G Y ++K A+ LAE L RELA I+VT
Sbjct: 137 --NGYIFNVASRAAKYGFADGGI--YGSTKFALLGLAESLYRELAPLG--IRVTT 185
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 115 bits (290), Expect = 3e-33
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ +G +D L+NNAGV LS+ ED+ ++ N+ T+ M+ +
Sbjct: 77 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH 136
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
GHI I S+A + Y SK L E +R +++T
Sbjct: 137 --SGHIFFITSVAATKAFRHSSI--YCMSKFGQRGLVETMRLYARKCN--VRITD 185
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 114 bits (288), Expect = 9e-33
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
+G D ++NNAG+ + + + +W+R+ DVNV+ L + + L MK R G II
Sbjct: 85 YGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTII 142
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+I+SIAG + + Y +K AV ++E +R E+A+ ++V
Sbjct: 143 NISSIAGKK--TFPDHAAYCGTKFAVHAISENVREEVAASN--VRVMT 186
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 114 bits (287), Expect = 1e-32
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTV-KAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
+ + +D+L+NNAG+ + P +A+ EDW ++D N L TR L M R
Sbjct: 65 LASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER 124
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVT 117
GHII+I S AG G +Y A+K V + LR +L ++VT
Sbjct: 125 N--HGHIINIGSTAGSW--PYAGGNVYGATKAFVRQFSLNLRTDLHGTA--VRVT 173
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 114 bits (288), Expect = 1e-32
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTV-KAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
+ + + F +D+L+NNAG + + + A+ED + + D NV AL + T+ L + +
Sbjct: 106 IENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK 165
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G I+++ SIAG +Y ASK AV + LR+EL + K I+V +
Sbjct: 166 N--SGDIVNLGSIAGRD--AYPTGSIYCASKFAVGAFTDSLRKELINTK--IRVIL 215
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 111 bits (281), Expect = 4e-32
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 7 VNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDD 66
+ ++++AG L E E + +++ N+ + + RE +K K++
Sbjct: 66 FEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP--- 122
Query: 67 GHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+++ I S A + Y A K AV L E +R EL +K+
Sbjct: 123 VNVVMIMSTAAQQ--PKAQESTYCAVKWAVKGLIESVRLELK--GKPMKIIA 170
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 112 bits (282), Expect = 5e-32
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
GG+D+L+NNAG+ + P+ +A + DW R++D N++ L TR AL + G ++
Sbjct: 82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS---KGTVV 138
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
++SIAG ++ +Y A+K V +E LR+E+ + ++V V
Sbjct: 139 QMSSIAGRV--NVRNAAVYQATKFGVNAFSETLRQEVT--ERGVRVVV 182
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 111 bits (280), Expect = 2e-31
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ GG+D+LI N L R+ ++VN ++ T AL +K
Sbjct: 97 VAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN 156
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G I+ ++S+AG + YSASK A+ +R+E + + + +T+
Sbjct: 157 ---GSIVVVSSLAGKVAYPMVA--AYSASKFALDGFFSSIRKEYSVSRVNVSITL 206
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 110 bits (278), Expect = 3e-31
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 5 DWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGV 64
V G V +L+NNAGV + L + +VNV+A T+ L +M
Sbjct: 100 KKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN- 158
Query: 65 DDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELAS-RKSQIKVTV 118
GHI+ + S AG + Y +SK A + L ELA+ + + +K T
Sbjct: 159 -HGHIVTVASAAG--HVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTC 210
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 108 bits (273), Expect = 1e-30
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTV-KAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
D + F + LINNAG+ + P +DW ++D N+ L TR L +
Sbjct: 88 VDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAH 147
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G I+++ S+AG G+ +Y +K V + LR +L ++VT
Sbjct: 148 G-AGASIVNLGSVAGKW--PYPGSHVYGGTKAFVEQFSLNLRCDLQGTG--VRVTN 198
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 107 bits (269), Expect = 2e-30
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
G +D+L++ G +A + EA + +L +++ LK + + +
Sbjct: 64 AGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLT----AAFVLKHARFQK--GARAV 117
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+ + Y+A+K A+ E R+EL + + +
Sbjct: 118 FFGAYPRYVQVPGFAA--YAAAKGALEAYLEAARKELLREG--VHLVL 161
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 108 bits (272), Expect = 3e-30
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 5 DWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGV 64
D R GGVDV+ +NAG+ V PL++ +DWR ++D+++ L + +G
Sbjct: 100 DEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQG- 158
Query: 65 DDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
GHI S AG + G Y +K+ V LAE L RE+ I V+V
Sbjct: 159 TGGHIAFTASFAGLVPNAGLGT--YGVAKYGVVGLAETLAREVKPNG--IGVSV 208
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 107 bits (270), Expect = 5e-30
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKA-PLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
F FG VDVL NNAG A P+ + W++++D N+ CT+EA + MK +
Sbjct: 93 FTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQ 152
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+ SI+ Y+A+KHA+T L + +
Sbjct: 153 EPRGGRIINNGSISATSPRPYSAP--YTATKHAITGLTKSTSLDGRVH 198
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 106 bits (268), Expect = 7e-30
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
++V I N G V P+ E +R++ ++ A RE+ + M G G I
Sbjct: 81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG--QGKIF 138
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTVSNFLV 123
+ A R ++++K + +A+ + REL + + V++ ++
Sbjct: 139 FTGATASLRGGSGFAA--FASAKFGLRAVAQSMARELMPK----NIHVAHLII 185
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 107 bits (269), Expect = 1e-29
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 5 DWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGV 64
D V FG V +L NNAGV + P+ E++ +DW +L VN+ + + + M R
Sbjct: 79 DEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVK 138
Query: 65 D----DGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
GH+++ S+A + G +Y+ +K AV L+E L L + I V+V
Sbjct: 139 AGEQKGGHVVNTASMAAFLAAGSPG--IYNTTKFAVRGLSESLHYSLLKYE--IGVSV 192
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 105 bits (265), Expect = 2e-29
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
V G DVL+NNAGV PL +W ++ VN+ A R +M
Sbjct: 97 ATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA 156
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
GHII+I+S+AG Y+ASK + L EL + ++V++
Sbjct: 157 K--RGHIINISSLAGKNPVADGAA--YTASKWGLNGLMTSAAEELRQHQ--VRVSL 206
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 105 bits (263), Expect = 7e-29
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTV-KAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
F V F +D+L+NNAG V PL E E W I+ N+ CT+ A + MK +
Sbjct: 102 FAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQ 161
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+ SI+ Y+A+KHA+T L + +
Sbjct: 162 TPRGGRIINNGSISAQTPRPNSAP--YTATKHAITGLTKSTALDGRMH 207
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 101 bits (254), Expect = 2e-27
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKN 61
D + G +DVLI+NAG V P E + + D+NV++ R AL M+
Sbjct: 76 RAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRR 135
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+ G +I I+S + Y A+K A+ +A REL+ I+ ++
Sbjct: 136 QK--HGLLIWISSSSS-AGGTPPYLAPYFAAKAAMDAIAVQYARELSRWG--IETSI 187
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 99.8 bits (249), Expect = 1e-26
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
G VDVL+ NAG+ + PL + +LDVNV+ + L MK RG G ++
Sbjct: 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVL 138
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
S+ G L L N++Y ASK A+ L E L L + +++
Sbjct: 139 VTGSVGG--LMGLPFNDVYCASKFALEGLCESLAVLLLP--FGVHLSL 182
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 98.0 bits (245), Expect = 2e-26
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
GG+D+L+NNA + AP+ E E + ++ +NV + A + M +G G II
Sbjct: 80 AGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQG-RGGKII 138
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
++ S AG R L Y A+K AV L + +L
Sbjct: 139 NMASQAGRRGEALVAI--YCATKAAVISLTQSAGLDLIKH 176
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 97.7 bits (244), Expect = 2e-26
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 11 FGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
G +D L+ NAGV ++E W+++ D+N ++ S AL +K G++
Sbjct: 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN---GNV 132
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRE 106
+ ++S A + G Y +SK A+ A L E
Sbjct: 133 VFVSSDACNMYFSSWGA--YGSSKAALNHFAMTLANE 167
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 98.0 bits (245), Expect = 2e-26
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
FGG+DVL+NNAG++ P+ + + + + VN+ A + K+M G
Sbjct: 89 ARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAG 148
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ G II + S A Y SK + + + L REL
Sbjct: 149 -EGGAIITVASAAALAPLPDHYA--YCTSKAGLVMATKVLARELGPH 192
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 96.8 bits (242), Expect = 5e-26
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 3 CFDWVNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKN 61
GGVD+L++NA V + +A E W +IL VNV A T+ + M+
Sbjct: 81 LVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEK 140
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
RG G ++ ++S+ + G Y+ SK A+ L + L ELA R
Sbjct: 141 RG--GGSVLIVSSVGAYHPFPNLGP--YNVSKTALLGLTKNLAVELAPR 185
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 96.4 bits (241), Expect = 8e-26
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
FD+ + FG VD+ IN G +K P+ E + ++ + +N ++A K M
Sbjct: 82 FDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMN--- 138
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
+GHII I + + Y+ +K V +EL ++
Sbjct: 139 -PNGHIITIATSLLAAYTGFYST--YAGNKAPVEHYTRAASKELMKQQ 183
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 96.1 bits (240), Expect = 1e-25
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ + GG DV++NNAGV P+ E ++ ++NV + + A+++ K G
Sbjct: 70 VEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEG 129
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G II+ S AGH + YS+SK AV L + R+LA +TV
Sbjct: 130 -HGGKIINACSQAGHVGNPELAV--YSSSKFAVRGLTQTAARDLAPL----GITV 177
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 96.0 bits (240), Expect = 1e-25
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
F ++ FG +DV +NNA V P+ E W +++N AL C +EA K M KN
Sbjct: 73 FQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG 132
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
G GHI+ I+S+ R SK A+ L L EL+ ++
Sbjct: 133 G---GHIVSISSLGSIRYLENYTT--VGVSKAALEALTRYLAVELSPKQ 176
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 95.7 bits (239), Expect = 1e-25
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
Query: 4 FDWVNRNFGGVDVLINNAGVT---VKAPLSEAASEDWRRILDVNVIALSSCTREALKSM- 59
D ++ +D +++N + + PL + D R++ + I + A+ +
Sbjct: 63 VDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLR 122
Query: 60 KNRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G +I I S G + Y ++ A L E + L+ + +
Sbjct: 123 AAGG---ASVIFITSSVGKKPLAYNPL--YGPARAATVALVESAAKTLSRD----GILL 172
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 95.7 bits (239), Expect = 1e-25
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
GG DVL+NNAG+ PL E ED ++I VNV ++ + A + G G II
Sbjct: 79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELG-VKGKII 137
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+ SIA + + YS +K AV L + +ELA + TV
Sbjct: 138 NAASIAAIQGFPILSA--YSTTKFAVRGLTQAAAQELAPK----GHTV 179
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 95.7 bits (239), Expect = 2e-25
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 11 FGGVDVLINNAG-VTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
+G VDV+INNA V P + E R +++ V + +++ G +
Sbjct: 86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK---GAV 142
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
+++NS+ G Y +K A+ +++ L EL +
Sbjct: 143 VNVNSMVVRHSQAKYGA--YKMAKSALLAMSQTLATELGEKG 182
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 95.8 bits (239), Expect = 2e-25
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
+G VDVL+NNAG T E + R + +++V + TR L M+ RG G ++
Sbjct: 77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG--SGSVV 134
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+I+S G YSA+K A+ L+EGL E+A IKV +
Sbjct: 135 NISSFGGQLSFAGFS--AYSATKAALEQLSEGLADEVAPFG--IKVLI 178
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 95.3 bits (238), Expect = 2e-25
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ V +FGG D+L+NNAG + EAA E W+ ++ V+A R + M+ RG
Sbjct: 76 VESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG 135
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G IIH SI + L +Y+ +K A+ + ++ L E+ + V
Sbjct: 136 --GGAIIHNASICA--VQPLWYEPIYNVTKAALMMFSKTLATEVIKD----NIRV 182
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 95.8 bits (239), Expect = 2e-25
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
V FGG D+L+NNAGV + + E W RI+ VN+ + R A+ MK +G
Sbjct: 95 MAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG 154
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G II+I S G S + Y A+KH + L + + E+A VTV
Sbjct: 155 --WGRIINIASAHGLVASPFKSA--YVAAKHGIMGLTKTVALEVAES----GVTV 201
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 95.3 bits (238), Expect = 2e-25
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
GG D+L NAGV+ P + E+W DVN + + A + G I+
Sbjct: 84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASN-TKGVIV 142
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+ S+A + L + YSASK AV + L RE+A + + V
Sbjct: 143 NTASLAAKVGAPLLAH--YSASKFAVFGWTQALAREMAPK----NIRV 184
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 95.3 bits (238), Expect = 2e-25
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 4 FDWVNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KN 61
F V+R FG +D L+NNAG+ + E + E R+L VNV C EA++ M +
Sbjct: 95 FSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRL 154
Query: 62 RGVDDGHIIHINSIAGHRLSILQ-GNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G I++++S+A S Q + Y+ASK A+ GL RE+A+ + V
Sbjct: 155 YSGQGGAIVNVSSMAAILGSATQYVD--YAASKAAIDTFTIGLAREVAAE----GIRV 206
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 95.3 bits (238), Expect = 2e-25
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
F FGGVDVL+NNAG+ ++E + R++ VN+ + REA + ++
Sbjct: 96 FATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLR--- 152
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G II++++ L G Y+A+K V + L +EL R +TV
Sbjct: 153 -VGGRIINMSTSQVGLLHPSYGI--YAAAKAGVEAMTHVLSKELRGR----DITV 200
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 95.8 bits (239), Expect = 2e-25
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
F+ + FG +D++ +N+GV + + E++ R+ +N REA K ++
Sbjct: 98 FEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE--- 154
Query: 64 VDDGHIIHINSIAGHRLSIL-QGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G +I + SI G ++ YS SK A+ A + ++A + K+TV
Sbjct: 155 -IGGRLILMGSITGQAKAVPKHAV--YSGSKGAIETFARCMAIDMADK----KITV 203
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 95.4 bits (238), Expect = 3e-25
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
FGG+D+L+NNA + + + + VN C + L + + HI+
Sbjct: 88 FGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP--NPHIL 145
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ + + Y+ +K ++++ GL E +
Sbjct: 146 TLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQ 185
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 94.9 bits (237), Expect = 3e-25
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ R G +L+NNAG + +E E W L + ++ R L +++R
Sbjct: 78 AEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRA 137
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
D I+ +NS+ + SA++ V L + E A +
Sbjct: 138 --DAAIVCVNSLLASQPEPHMVA--TSAARAGVKNLVRSMAFEFAPK 180
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 94.9 bits (237), Expect = 3e-25
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ FG +DV+INNAG+ E + DW +++D N+ +REA+K
Sbjct: 76 VQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEND 135
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
G +I+++S+ L + Y+ASK + ++ E L E A +
Sbjct: 136 -IKGTVINMSSVHEKIPWPLFVH--YAASKGGMKLMTETLALEYAPKG 180
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 95.0 bits (237), Expect = 4e-25
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
FD +FG +D+ ++N+GV L + E++ R+ +N REA + +
Sbjct: 87 FDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLT--- 143
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+ G I+ +S S + + +YS SK AV ++ + K+TV
Sbjct: 144 -EGGRIVLTSSNTSKDFS-VPKHSLYSGSKGAVDSFVRIFSKDCGDK----KITV 192
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 94.1 bits (235), Expect = 4e-25
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
GG+ VL++ A V V+ P E + E+WRR+L +++ + A M G
Sbjct: 61 VKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG 120
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G ++ I S+ Y+ +K A+ L L +E A
Sbjct: 121 --WGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARL 165
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 94.2 bits (235), Expect = 5e-25
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
F R FGGVD+L+NNAG+ AP+ + E W +I+ +N+ A+ TR AL M+ R
Sbjct: 70 FALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN 129
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I S+ G S + Y A+KH V L + + E A+
Sbjct: 130 --WGRIINIASVHGLVGSTGKAA--YVAAKHGVVGLTKVVGLETATS 172
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 94.2 bits (235), Expect = 6e-25
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
D R G +D+L+NNAG+ A + + +E W IL +N+ A+ T AL MK +G
Sbjct: 74 VDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG 133
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I S G S + Y A+KH V + E A +
Sbjct: 134 F--GRIINIASAHGLVASANKSA--YVAAKHGVVGFTKVTALETAGQ 176
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 95.7 bits (238), Expect = 6e-25
Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
FGG+D+L+NNA + ++ +++VN ++ + +K HI+
Sbjct: 127 FGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK--VAHIL 184
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELAS 109
+I+ + + Y+ +K+ +++ G+ E
Sbjct: 185 NISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFKG 223
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 93.8 bits (234), Expect = 8e-25
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
FG +D L+NNAGV + P E ED+ L VNV T+ A M K
Sbjct: 87 VREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG 146
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
GHI+ I + + + + + S +K + + L E +
Sbjct: 147 S---GHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRS 191
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 93.7 bits (234), Expect = 8e-25
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
V +L+N+AG+ E WR+++ VNV + +R ++M RG G I+
Sbjct: 83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG--AGAIV 140
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
++ S++G ++ Q Y ASK AV L L E A R
Sbjct: 141 NLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGR 180
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 93.3 bits (233), Expect = 9e-25
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
G VD+L+NNA V + P E E + R +VN+ A+ ++ + + RGV G I+
Sbjct: 74 VGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIV 132
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+++S R Y ++K A+ +L + + EL
Sbjct: 133 NVSSQCSQRAVTNHSV--YCSTKGALDMLTKVMALELGPH 170
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 93.8 bits (234), Expect = 9e-25
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
FD +FGG+D +++N+G+ V E E + ++ ++N ++ LK +
Sbjct: 90 FDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCR--- 146
Query: 64 VDDGHIIHINSIAGHRLSIL-QGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G II +SIA I Y+ SK AV + ++ VTV
Sbjct: 147 -RGGRIILTSSIAAVMTGIPNHAL--YAGSKAAVEGFCRAFAVDCGAK----GVTV 195
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 93.8 bits (234), Expect = 9e-25
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
D + GG+D+ + NAG+ + + E+++RI D NV + + A ++M ++G
Sbjct: 100 LDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQG 159
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II S++GH ++I Q Y SK AV L + + ELA
Sbjct: 160 -LGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPH 205
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 93.8 bits (234), Expect = 1e-24
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
GG+D+L+N+AG+ APL E D+ ++ VN A R A + +
Sbjct: 100 IRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLG--- 156
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
D G II I S + G +YSASK A+ L +GL R+L R +TV
Sbjct: 157 -DGGRIITIGSNLAELVP-WPGISLYSASKAALAGLTKGLARDLGPR----GITV 205
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 93.9 bits (234), Expect = 1e-24
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
FGG+D+ +NNA + E + + + + V + ++ + MK R + HI+
Sbjct: 91 FGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRD--NPHIL 148
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
++ L Y +K+ +T+ A G+ EL
Sbjct: 149 TLSPPIRLEPKWL-RPTPYMMAKYGMTLCALGIAEELRDA 187
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 93.8 bits (234), Expect = 1e-24
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
G +D+++ NAGV + ED+R ++D+NV + + G G II
Sbjct: 99 LGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGG-RGGSII 157
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
I+S AG ++ + Y+ASKHAVT LA EL
Sbjct: 158 LISSAAGMKMQPFMIH--YTASKHAVTGLARAFAAELGKH 195
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 93.4 bits (233), Expect = 1e-24
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
V G +D+++NNAGV + ++E DW L VNV A R A+ M G
Sbjct: 85 PGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG 144
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I+++ S G R Y +K A+ L + + + A +
Sbjct: 145 --GGAIVNVASCWGLRPGPGHAL--YCLTKAALASLTQCMGMDHAPQ 187
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 92.6 bits (231), Expect = 2e-24
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
D + NAG+ +K + + E +++LD+NV + + ++K I+
Sbjct: 68 NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGAS----IV 123
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
S Y+ SK A+ + + L +LA +
Sbjct: 124 FNGSDQCFIAKPNSFA--YTLSKGAIAQMTKSLALDLAKYQ 162
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 93.0 bits (232), Expect = 2e-24
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
V+ G VD+L+ AG+ + + W + +D+N+ + + + M +
Sbjct: 81 VRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ 140
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I+ I S++G ++ Q Y+ASK V L E A
Sbjct: 141 K--QGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPH 186
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 92.7 bits (231), Expect = 2e-24
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
+ +N VD + AG S+ + + ++D+N+ + + K +
Sbjct: 78 IEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG 137
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKV 116
G+ + + A + Y A+K A + + L E +
Sbjct: 138 GL----FVLTGASAALNRTSGMIA--YGATKAATHHIIKDLASENGGLPAGSTS 185
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 93.0 bits (232), Expect = 2e-24
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 3 CFDWVNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKN 61
D V G + +++ AG + P+++ SE WRR +D+NV + A + M
Sbjct: 81 AVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR 140
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G + I+SIA G Y +K AV L + EL +
Sbjct: 141 GG--GGSFVGISSIAASNTHRWFGA--YGVTKSAVDHLMQLAADELGAS 185
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 92.3 bits (230), Expect = 3e-24
Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 13/116 (11%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
+ VD+LIN AG+ R + +N L + T L K +
Sbjct: 75 LKKIFDQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNTTTAILDFWDKRK 126
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G G I +I S+ G YSASK AV L + +
Sbjct: 127 GGPGGIIANICSVTGFNAIHQVPV--YSASKAAVVSFTNSLAKLAPITG--VTAYS 178
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 92.2 bits (230), Expect = 3e-24
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
G VD+L+NNA + + P E E + R VN+ ++ ++ + M NRGV G I+
Sbjct: 74 IGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIV 132
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+++S+ H YS++K A+T+L + + EL
Sbjct: 133 NVSSMVAHVTFPNLIT--YSSTKGAMTMLTKAMAMELGPH 170
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 91.8 bits (229), Expect = 4e-24
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ G VDVL+NNA + +WRR+L+VN+ A + A + M+ G
Sbjct: 68 VEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG 127
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I+++ S+ G Y+ASK + L L +LA
Sbjct: 128 --GGAIVNVASVQGLFAEQENAA--YNASKGGLVNLTRSLALDLAPL 170
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 91.8 bits (229), Expect = 5e-24
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 3 CFDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
V +FG +D I NAG T + + + + E W ++ V++ C + K R
Sbjct: 91 LVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKER 150
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G ++ S++GH + Q Y+ +K +A L E
Sbjct: 151 G--TGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF 196
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 91.8 bits (229), Expect = 5e-24
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 4 FDWVNRNFGG-VDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
V F G +++L+NNAGV + + +D+ I+ N A ++ A +K
Sbjct: 89 MQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS 148
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+G++I ++SIAG YSASK A+ + + L E A
Sbjct: 149 Q--NGNVIFLSSIAGFSALPSVSL--YSASKGAINQMTKSLACEWAKD 192
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 91.9 bits (229), Expect = 5e-24
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
D + + +G + VL+NNAG+ + + +WRRI+DVN+ ++ A+ M
Sbjct: 65 IDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSR 124
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
D I++I+S+ ++ Y SKHAV L + + + A
Sbjct: 125 --DPSIVNISSVQASIITKNASA--YVTSKHAVIGLTKSIALDYAPL 167
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 91.4 bits (228), Expect = 6e-24
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 4 FDWVNRNFGG-VDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
+ V +F G +++L+NNAG+ + + ED+ I+ +N A + A +K
Sbjct: 77 MNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS 136
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G+++ I+S++G + Y A+K A+ L L E A
Sbjct: 137 E--RGNVVFISSVSGALAVPYEAV--YGATKGAMDQLTRCLAFEWAKD 180
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 91.1 bits (227), Expect = 6e-24
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-K 60
+ +D L+N AG+ + + EDW++ VNV + ++ + +
Sbjct: 63 QVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRR 122
Query: 61 NRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
RG G I+ + S A H I Y ASK A+ LA + ELA
Sbjct: 123 QRG---GAIVTVASDAAHTPRIGMSA--YGASKAALKSLALSVGLELAGS 167
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 91.5 bits (228), Expect = 8e-24
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
++ V G +DVL NAG PL E E + D NV + ++AL +
Sbjct: 94 YEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGS 153
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
++ S AG + Y+ASK A+ A +L R
Sbjct: 154 S----VVLTGSTAGSTGTPAFSV--YAASKAALRSFARNWILDLKDRG 195
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 90.6 bits (226), Expect = 1e-23
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ FG VD L+NNAG++ L + E +R+++++N+ + + + +MK+ G
Sbjct: 70 VAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG 129
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++I+S AG L + Y ASK V L++ EL +
Sbjct: 130 --GGSIVNISSAAGLMGLALTSS--YGASKWGVRGLSKLAAVELGTD 172
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 91.1 bits (227), Expect = 1e-23
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ +D+L+NNAG + A L W +++ +NV ++ SC ++ L ++
Sbjct: 96 AQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSA 155
Query: 64 VDD--GHIIHINSIAGHRLSILQGNEM----YSASKHAVTILAEGLRRELASR 110
+ +I+I S+AG + Y SK A+ L+ L +EL
Sbjct: 156 SAENPARVINIGSVAG-----ISAMGEQAYAYGPSKAALHQLSRMLAKELVGE 203
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 90.7 bits (226), Expect = 1e-23
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ G +D+L NAGV+ P + + + R VN + ++ G
Sbjct: 73 GAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGG 132
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
I+ +S+A YSASK A+ A L EL R
Sbjct: 133 S----IVFTSSVADEGGHPGMSV--YSASKAALVSFASVLAAELLPRG 174
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 90.7 bits (226), Expect = 1e-23
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
FG + L++ AG + ++E W ++LDVN+ +L + AL M
Sbjct: 77 ISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKG 136
Query: 63 GVDDGHIIHINSIAGHRLSIL-QGNEMYSASKHAVTILAEGLRRELASR 110
G I+ +S AG Y+ SK AV GL +E+ +
Sbjct: 137 GA----IVTFSSQAGRDGGGPGALA--YATSKGAVMTFTRGLAKEVGPK 179
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 89.9 bits (224), Expect = 2e-23
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
FD + FG V L+NNAG+ V + E + +WR++L VN+ + TR ++ MKN+G
Sbjct: 73 FDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG 132
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKV 116
II+++SI G G Y+ASK AV I+++ + A + ++V
Sbjct: 133 -LGASIINMSSIEGFVGDPSLGA--YNASKGAVRIMSKSAALDCALKDYDVRV 182
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 90.4 bits (225), Expect = 2e-23
Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 20/129 (15%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPL-----------SEAASEDWRRILDVNVIALSSCT 52
D R FG DVL+NNA PL ++ + N +A
Sbjct: 85 IDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLI 144
Query: 53 REALKSMKNRGV---DDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELAS 109
R + G + ++++ Y+ +KHA+ L ELA
Sbjct: 145 RAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCV--YTMAKHALGGLTRAAALELAP 202
Query: 110 RKSQIKVTV 118
R + V
Sbjct: 203 R----HIRV 207
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 89.8 bits (224), Expect = 2e-23
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
V R G ++VL+NNAG+ + + ED+ R+L +N ++ ++ + +MK G
Sbjct: 71 MAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG 130
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKV 116
G II++ S++ YSASK AV+ L + I+V
Sbjct: 131 ---GSIINMASVSSWLPIEQYAG--YSASKAAVSALTRAAALSCRKQGYAIRV 178
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 89.8 bits (224), Expect = 2e-23
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
F ++ VD+LINNAG+ + P+ E E+W++++D N+ + +R A K M R
Sbjct: 77 FSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARN 136
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I S+ Y+A+K + +L + E A
Sbjct: 137 -SGGKIINIGSLTSQAARPTVAP--YTAAKGGIKMLTCSMAAEWAQF 180
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 89.9 bits (224), Expect = 3e-23
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
+ VD+LINN G+ + EDW ++ +VN+++ TR LK M R +G +I
Sbjct: 83 YPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK--EGRVI 140
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
I S A S + YSA+K L+ L VTV
Sbjct: 141 FIASEAAIMPSQEMAH--YSATKTMQLSLSRSLAELTTGT----NVTV 182
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 89.9 bits (224), Expect = 3e-23
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
D FGGVD L+ NAGV A L + ED+ R++ +N+ CT+ A M RG
Sbjct: 94 VDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG 153
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++++S+AG G Y SK + L+ EL S
Sbjct: 154 --GGAIVNLSSLAGQVAVGGTGA--YGMSKAGIIQLSRITAAELRSS 196
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 89.5 bits (223), Expect = 3e-23
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 4 FDWVNRNFGG-VDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
V+ FGG +D+LINN G P + +ED+ + N+ + ++ A +K
Sbjct: 82 MQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS 141
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G+II ++SIAG + + YSA+K A+ LA L E AS
Sbjct: 142 G--CGNIIFMSSIAGVVSASVGSI--YSATKGALNQLARNLACEWASD 185
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 89.5 bits (223), Expect = 3e-23
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
D+ G VD+L+NNAG P + D+RR ++NV + ++ M+ G
Sbjct: 79 ADFAISKLGKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG 137
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I+ I S+A +I + Y++SK A + L + +L +
Sbjct: 138 --GGVILTITSMAAENKNINMTS--YASSKAAASHLVRNMAFDLGEK 180
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 89.5 bits (223), Expect = 4e-23
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
VDVL+NNAG+ +AP E + WR +L VN+ A +R +M G G I+
Sbjct: 104 TRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG--SGRIV 161
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
I S+ + Y+ASKHAV L L E A R
Sbjct: 162 TIASMLSFQGGRNVAA--YAASKHAVVGLTRALASEWAGR 199
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 89.5 bits (223), Expect = 4e-23
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
G +DVL+NNAG+ + P+ + E+W R+L+V + ++ TR AL+ +
Sbjct: 92 ITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVD 151
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++ S+ G R Q + Y+A+K V L E
Sbjct: 152 -HGGVIVNNASVLGWRAQHSQSH--YAAAKAGVMALTRCSAIEAVEF 195
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 89.5 bits (223), Expect = 5e-23
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 3 CFDWVNRNFGGVDVLINNAGVTVK--APLSEAASEDWRRILDVNVIALSSCTREALKSMK 60
++FG +DV + NAGVT + + W +I+ V++ + C+ K K
Sbjct: 101 TISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFK 160
Query: 61 NRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G +I +SI+G ++I Q Y+ +K A T LA+ L E A
Sbjct: 161 KNG--KGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPF 208
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 89.5 bits (223), Expect = 5e-23
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
FG +DV++ NAGV + E E W ++ VN+ R + +M G + G I+
Sbjct: 103 FGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAG-NGGSIV 161
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
++S AG + + G+ YSASKH +T L L EL
Sbjct: 162 VVSSSAGLKATPGNGH--YSASKHGLTALTNTLAIELGEY 199
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 89.0 bits (221), Expect = 6e-23
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVT---VKAPLSEAASEDWRRILDVNVIALSSCTREALKS 58
+ +LINNA K L+ + +N+ ++ T L +
Sbjct: 81 AVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNA 140
Query: 59 MKNRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRE 106
++ +++I+S+ + +G +Y A K A +L + L E
Sbjct: 141 FQDSPGLSKTVVNISSLCALQ--PYKGWGLYCAGKAARDMLYQVLAAE 186
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 88.8 bits (221), Expect = 6e-23
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
D + + +++NA + E A +++ R+ V+++A +
Sbjct: 90 IDLLKTQTSSLRAVVHNASEWLAETPGEEA-DNFTRMFSVHMLAPYLINLHCEPLLTASE 148
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
I+HI+ + S Y A+K + L A
Sbjct: 149 --VADIVHISDDVTRKGSSKHIA--YCATKAGLESLTLSFAARFAPL 191
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 88.7 bits (221), Expect = 6e-23
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
D FGG+ VL+NNAG+ + + A +W+RILDVN+ + R +K MK G
Sbjct: 72 VDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG 131
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I+SI G ++ Y+A+K AV L + EL
Sbjct: 132 --RGSIINISSIEGLAGTVACHG--YTATKFAVRGLTKSTALELGPS 174
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 88.0 bits (219), Expect = 1e-22
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTV-KAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KN 61
+ V +G VDVL++N P+ + A ED+R ++ I + M K
Sbjct: 63 IEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR 122
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ GHII I S Y++++ LA L +EL
Sbjct: 123 KS---GHIIFITSATPFGPWKELST--YTSARAGACTLANALSKELGEY 166
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 88.4 bits (220), Expect = 1e-22
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ G +D+L+NNAG+ + P+ E + +R+++D+++ A ++ + SM +G
Sbjct: 102 VAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPSMIKKG 161
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I S+ Y+A+K + +L + + E
Sbjct: 162 --HGKIINICSMMSELGRETVSA--YAAAKGGLKMLTKNIASEYGEA 204
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 88.0 bits (219), Expect = 1e-22
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 5 DWVNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ N+ +D +++NAG+ P+SE + W+ ++ VNV A T+ L +
Sbjct: 84 QRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD 143
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G ++ +S G + G Y+ASK A + + L E R
Sbjct: 144 --AGSLVFTSSSVGRQGRANWGA--YAASKFATEGMMQVLADEYQQR 186
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 88.4 bits (220), Expect = 1e-22
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
+ FG +D+++ NAG+ V AP+ + +W + VN+ + +K R
Sbjct: 96 VRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR 155
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G I+ ++SI G R G Y+A+K A + + L EL
Sbjct: 156 G--GGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKH 201
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 88.0 bits (219), Expect = 2e-22
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ + +G +D+L+NNAG+ +PL +E WRRI+DVNV + + M G
Sbjct: 72 VEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG 131
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELA 108
G II+I S+ + + Y SKHA+ L + + A
Sbjct: 132 --HGSIINIASVQS--YAATKNAAAYVTSKHALLGLTRSVAIDYA 172
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 87.6 bits (218), Expect = 2e-22
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
D V R+FG +D L NNAG AP+ + S+D+ R+L +NV + + M +
Sbjct: 75 VDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ 134
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++ S+AG + Y SK A+ L E +LA
Sbjct: 135 N--YGRIVNTASMAGVKGPPNMAA--YGTSKGAIIALTETAALDLAPY 178
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 87.6 bits (218), Expect = 2e-22
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM--KN 61
++ + G + LI NAGV+V P +E ED+ + DVNV + + R K K
Sbjct: 83 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQ 142
Query: 62 RGVDDGHIIHINSIAGHRLSILQ--GNEM---YSASKHAVTILAEGLRRELASR 110
+ G I+ +S++ ++ G+ Y++SK A + L +GL E AS
Sbjct: 143 QK---GSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASA 193
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 88.0 bits (219), Expect = 2e-22
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVT--VKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-K 60
D V FG +D L+NNAG+ V+ + E++ I+ VN+ T+ LK+M
Sbjct: 98 VDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLA 157
Query: 61 NRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ II+I S++ S + + Y SK + ++GL LA
Sbjct: 158 SDARASRSIINITSVSAVMTSPERLD--YCMSKAGLAAFSQGLALRLAET 205
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 87.2 bits (217), Expect = 3e-22
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
FG + VL+NNAG P + D+ +N+ +L ++ A M K
Sbjct: 80 IKAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG 138
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G I++I+S+AG ++ + Y +SK AV L + ++
Sbjct: 139 G---GAILNISSMAGENTNVRMAS--YGSSKAAVNHLTRNIAFDVGPM 181
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 87.2 bits (217), Expect = 3e-22
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ V FG +D ++N AG+ + P E +++R++++VN+ REA ++
Sbjct: 90 LEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD 149
Query: 64 VDDGHIIHINSIAGHRLSIL-QGNEMYSASKHAVTILAEGLRRELASR 110
+ II+I S+ +++ Y+ASK V L + L +E
Sbjct: 150 --NPSIINIGSLTVEEVTMPNISA--YAASKGGVASLTKALAKEWGRY 193
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 87.2 bits (217), Expect = 3e-22
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ +G VDVL+NNAG + E W RI+ VNV + C++ + M+ G
Sbjct: 92 VEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG 151
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+ S S + Y ASK A++ L + + A
Sbjct: 152 --GGSIINTTSYTA--TSAIADRTAYVASKGAISSLTRAMAMDHAKE 194
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 87.2 bits (217), Expect = 4e-22
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNRGVDDGHI 69
GG+D+ I NAG++ A L E S W ++ N+ + M K G I
Sbjct: 97 LGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNY---GRI 153
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ ++S+ GH + Q + Y +SK V L + +L
Sbjct: 154 VTVSSMLGHSANFAQAS--YVSSKWGVIGLTKCAAHDLVGY 192
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 86.8 bits (216), Expect = 4e-22
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
+ FG VD+L+NNAG+ K E++ RI+ VNV + T + + K
Sbjct: 74 VEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKEN 133
Query: 63 --GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
+ I+++ S R Y+A+K V + + L ELA K
Sbjct: 134 GAKGQECVILNVASTGAGRPRPNLAW--YNATKGWVVSVTKALAIELAPAK 182
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 86.4 bits (215), Expect = 4e-22
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
V FG D+L+NNAG+ P E E W++ ++NV + + + M +N
Sbjct: 73 GKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG 132
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II++ S + Y ++K A L +L
Sbjct: 133 W---GRIINLTSTTYWLKIEAYTH--YISTKAANIGFTRALASDLGKD 175
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 86.8 bits (216), Expect = 5e-22
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
R FG +D ++NNAG E +++ +R++L++N++ + T+ AL ++
Sbjct: 73 VSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS 132
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G++I+I+S+ G Y A+K AVT + + L + +
Sbjct: 133 Q---GNVINISSLVG--AIGQAQAVPYVATKGAVTAMTKALALDESPY 175
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 87.3 bits (217), Expect = 6e-22
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
FG +D+L++N G++ + + + W IL N+I R L SM RG G +I
Sbjct: 133 FGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERG-QGGSVI 191
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
++S G R + Q + Y+ASKH V L L E+
Sbjct: 192 FVSSTVGLRGAPGQSH--YAASKHGVQGLMLSLANEVGRH 229
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 86.1 bits (214), Expect = 8e-22
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
D FGG+DVLINNAG V PL E + ++D N+ ++ T+ AL +
Sbjct: 76 VDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAA 135
Query: 63 GVDD---GHIIHINSIAGHRL-SILQGNEMYSASKHAVTILAEGLRRELASR 110
+I SIAGH G Y A+K + + +
Sbjct: 136 AKASGQTSAVISTGSIAGHTGGGPGAGL--YGAAKAFLHNVHKNWVDFHTKD 185
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 85.3 bits (212), Expect = 1e-21
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 7 VNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVD 65
V FG +D L++NA + + PL + ED+ +++ VNV A TR L +K
Sbjct: 88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE-- 145
Query: 66 DGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKV 116
D I +S G + G Y SK A L + L EL + ++
Sbjct: 146 DASIAFTSSSVGRKGRANWGA--YGVSKFATEGLMQTLADELEGVTA-VRA 193
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 85.7 bits (213), Expect = 1e-21
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASED-----WRRILDVNVIALSSCTREALKSMKNRGVD 65
FG +D LI NAG+ + ED + I VNV + L ++ +
Sbjct: 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-- 134
Query: 66 DGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G ++ S AG + Y+A+KHAV L + ELA
Sbjct: 135 -GSVVFTISNAGFYPNGGGPL--YTATKHAVVGLVRQMAFELAPH 176
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 85.2 bits (212), Expect = 1e-21
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
+ +DVL NNAG+ P++E + E W R+L VN+ + +R + M +
Sbjct: 75 VRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQ 134
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G I++ SIAG R Y+ +KH + L + +
Sbjct: 135 G--KGVIVNTASIAGIRGGFAGAP--YTVAKHGLIGLTRSIAAHYGDQ 178
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 85.3 bits (212), Expect = 1e-21
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 10 NFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
D+LINNAG+ A + E + + R++ VN A ++AL ++ D+ I
Sbjct: 88 GSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLR----DNSRI 143
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRK 111
I+I+S A YS +K A+ + L ++L +R
Sbjct: 144 INISSAATRISLPDFIA--YSMTKGAINTMTFTLAKQLGARG 183
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 85.4 bits (212), Expect = 2e-21
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
F V +FG +D+L+NNAGV +E ++W + L +N++++ S T L M K
Sbjct: 77 FRKVVDHFGRLDILVNNAGVN-----NE---KNWEKTLQINLVSVISGTYLGLDYMSKQN 128
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTIL--AEGLRRELASR 110
G + G II+++S+AG Q Y ASKH + + L L +
Sbjct: 129 GGEGGIIINMSSLAGLMPVAQQPV--YCASKHGIVGFTRSAALAANLMNS 176
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 84.9 bits (211), Expect = 2e-21
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 9 RNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGH 68
R+ GG D+L+ + G E EDW + + R A + M +G G
Sbjct: 81 RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG--WGR 138
Query: 69 IIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
+++I S+ R + + V + L ELA VTV
Sbjct: 139 MVYIGSVTLLRPWQDLAL--SNIMRLPVIGVVRTLALELAPH----GVTV 182
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 84.9 bits (211), Expect = 2e-21
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 11 FGGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
FGG+D NNAG +S + E WR LD N+ + + + ++ G G +
Sbjct: 83 FGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG--GGSL 140
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+S GH G Y+ASK + L + L EL +R
Sbjct: 141 TFTSSFVGHTAGF-AGVAPYAASKAGLIGLVQALAVELGAR 180
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 84.1 bits (209), Expect = 4e-21
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 3 CFDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
++ +DVL+NNA K LS E++ IL V + A +R +
Sbjct: 65 FVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN 124
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELAS 109
G II+I S + Y+++K + L L L
Sbjct: 125 K---GRIINIASTRAFQSEPDSEA--YASAKGGIVALTHALAMSLGP 166
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 83.7 bits (208), Expect = 4e-21
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTV---KAPLSEAASEDWRRILDVNVIALSSCTREALKSMK 60
FG +DVL+NNAG+T L E + +++ VNV + R L M
Sbjct: 71 IAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHML 130
Query: 61 NRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+G G I++I S+A + Y+ SK AV L + + + A
Sbjct: 131 LQG--AGVIVNIASVASLVAFPGRSA--YTTSKGAVLQLTKSVAVDYAGS 176
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 83.7 bits (208), Expect = 5e-21
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
+DVL N AG + + +DW +++NV ++ + L M + G+II
Sbjct: 72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNII 129
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+++S+A + + +YS +K AV L + + + +
Sbjct: 130 NMSSVASS-VKGVVNRCVYSTTKAAVIGLTKSVAADFIQQ 168
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 83.1 bits (206), Expect = 6e-21
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 11 FGGVDVLINNAGV-TVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
VD ++ AG S++ ++ + ++ + + A K +K G+ +
Sbjct: 74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGL----L 129
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKV 116
+ A + G Y +K AV L + L + + S
Sbjct: 130 TLAGAKAALDGT--PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAA 174
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 83.4 bits (207), Expect = 7e-21
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
FG +D NNAG+ K P + ++ +++ +N+ + + LK M+ +
Sbjct: 83 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ 142
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G +++ S+ G R Q Y+A+KH V L E
Sbjct: 143 G--SGMVVNTASVGGIRGIGNQSG--YAAAKHGVVGLTRNSAVEYGRY 186
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 83.4 bits (207), Expect = 1e-20
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 11 FGGVDVLINNAGVTVKAPL----SEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDD 66
FG +DVL+NNAG + ++ + + + L +N+ A+ T++ +
Sbjct: 84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--- 140
Query: 67 GHIIHINSI-AGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++++SI AG + Y+ +K A+ +LA
Sbjct: 141 GEIVNVSSIVAGPQAQPDFLY--YAIAKAALDQYTRSTAIDLAKF 183
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 83.0 bits (206), Expect = 1e-20
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKA--PLSEAASEDWRRILDVNVIALSSCTREALKSMKN 61
D+ FG +D++ NNA + A +++ + W VN + A+ + +
Sbjct: 76 IDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLIS 135
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G I++I+S H + Y+ +K A+ L + +
Sbjct: 136 AG--GGAIVNISSATAHAAYDMSTA--YACTKAAIETLTRYVATQYGRH 180
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 82.6 bits (205), Expect = 1e-20
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 4 FDWVNRNFGGVDVLINNAGV---TVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM- 59
D FGG+D L+NNA + L E +++ + VN+ CTR K M
Sbjct: 77 ADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMT 136
Query: 60 KNRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
K G G I++ +S A + Y +K + L + L REL R
Sbjct: 137 KRGG---GAIVNQSSTAAWL-----YSNYYGLAKVGINGLTQQLSRELGGR 179
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 83.4 bits (207), Expect = 1e-20
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 11 FGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
G +D+++ NA + L+ + WR ++DVN+ R A+ + G I
Sbjct: 115 LGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGK-RGGSI 173
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ +SI G R + GN Y ASKH + L + EL R
Sbjct: 174 VFTSSIGGLRGAENIGN--YIASKHGLHGLMRTMALELGPR 212
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 83.0 bits (206), Expect = 1e-20
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 11 FGGVDVLINNAGVT-VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
G +D+++ NAG+ L + + EDW ++D+N+ + + + M G G I
Sbjct: 102 LGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGG-RGGSI 160
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
I +S+ G + G+ Y A+KH V L EL
Sbjct: 161 ILTSSVGGLKAYPHTGH--YVAAKHGVVGLMRAFGVELGQH 199
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 82.7 bits (205), Expect = 2e-20
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKS---MK 60
FG + +L+N+AG ++ W +LD N+ + TRE L++ +
Sbjct: 92 VAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMRE 151
Query: 61 NRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTV 118
G I++I S G + + Y+ASKH V + + ELA +TV
Sbjct: 152 AGW---GRIVNIASTGGKQGVMYAAP--YTASKHGVVGFTKSVGFELAKT----GITV 200
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 81.8 bits (203), Expect = 2e-20
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ ++ FG +D+LINNA P + + W ++++ + C++ K +G
Sbjct: 74 IEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKG 133
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ G+II++ + + +A+K V + + L E +
Sbjct: 134 I-KGNIINMVATYAWDAGPGVIH--SAAAKAGVLAMTKTLAVEWGRK 177
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 82.3 bits (204), Expect = 3e-20
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
D + FG +D+LIN A P + ++ ++D++ + +R + ++
Sbjct: 96 VDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH 155
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G I++I + G+R LQ + ++K AV + L E +
Sbjct: 156 G---GVIVNITATLGNRGQALQVH--AGSAKAAVDAMTRHLAVEWGPQ 198
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 82.3 bits (204), Expect = 3e-20
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 20/129 (15%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASED----------WRRILDVNVIALSSCTR 53
+ R FG DVL+NNA PL + ED ++ N IA T
Sbjct: 97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTM 156
Query: 54 EALKSMKNRGVDD----GHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELAS 109
+ K + I+++ + + Y+ KHA+ L + ELA
Sbjct: 157 SFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSL--YNMGKHALVGLTQSAALELAP 214
Query: 110 RKSQIKVTV 118
+ V
Sbjct: 215 Y----GIRV 219
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 82.2 bits (204), Expect = 3e-20
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 4 FDWVNRNFGGVDVLINNAGV-TVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNR 62
GG+D+L AG T + + SE +++ VNV AL T+EA+ + +
Sbjct: 119 VHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLP-K 177
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEM---YSASKHAVTILAEGLRRELASRKSQIKV 116
G II +SI Q + Y+A+K A+ + GL +++A + I+V
Sbjct: 178 G---ASIITTSSIQA-----YQPSPHLLDYAATKAAILNYSRGLAKQVAEKG--IRV 224
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 80.4 bits (199), Expect = 3e-20
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
G VD +++ G +PL+E E + + + + S+ ++G
Sbjct: 56 VGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGS----FT 111
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELA 108
I + + + + AVT A+ E+
Sbjct: 112 LTTGIMMEDPIVQGAS--AAMANGAVTAFAKSAAIEMP 147
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 82.0 bits (203), Expect = 4e-20
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 24/133 (18%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDW--------------RRILDVNVIALS 49
++G DVL+NNA PL + + N IA
Sbjct: 96 VAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY 155
Query: 50 SCTREALKSMKNRGVDD----GHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRR 105
+ + II++ ++ + Y+ +K A+ L
Sbjct: 156 FLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTI--YTMAKGALEGLTRSAAL 213
Query: 106 ELASRKSQIKVTV 118
ELA ++ V
Sbjct: 214 ELAPL----QIRV 222
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 81.5 bits (202), Expect = 5e-20
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKS---MK 60
V +G VDVL+NNAG +E A E W +++ N+ + T++ LK+ ++
Sbjct: 90 VAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLE 149
Query: 61 NRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++I S G + + YSASKH V + L ELA
Sbjct: 150 RGT---GRIVNIASTGGKQGVVHAAP--YSASKHGVVGFTKALGLELART 194
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 80.4 bits (199), Expect = 6e-20
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 11 FGGVDVLINNAGV-TVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
VD + AG + S+ ++ ++ +V + + + A +K G+ +
Sbjct: 70 GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGL----L 125
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKV 116
+ A + Y +K AV L L + + V
Sbjct: 126 QLTGAAAAMGPT--PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAV 170
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 81.7 bits (202), Expect = 7e-20
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 24/133 (18%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDW--------------RRILDVNVIALS 49
++G DVL+NNA PL + + N IA
Sbjct: 133 VAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPY 192
Query: 50 SCTREALKSMKNRGVDD----GHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRR 105
+ + II++ ++ + Y+ +K A+ L
Sbjct: 193 FLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTI--YTMAKGALEGLTRSAAL 250
Query: 106 ELASRKSQIKVTV 118
ELA ++ V
Sbjct: 251 ELAPL----QIRV 259
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 81.1 bits (201), Expect = 9e-20
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
FG +DV++ NAG+ + + + DV+ + + + AL + + II
Sbjct: 97 FGKLDVVVANAGIC--PLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGAS----II 150
Query: 71 HINSIAGHRLSILQGNEM---------YSASKHAVTILAEGLRRELASR 110
S+AG + YS +K V L +LA +
Sbjct: 151 TTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQ 199
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 80.3 bits (199), Expect = 1e-19
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 11 FGGVDVLINNAGV----TVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDD 66
FG +D+L+NNAG + + + E + L++N+ ++ + T++A+ + +
Sbjct: 84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--- 140
Query: 67 GHIIHINSIAGHRLSILQGNEM---YSASKHAVTILAEGLRRELASRK 111
G I++I+SIA S L YS +K A+ +L
Sbjct: 141 GEIVNISSIA----SGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHG 184
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 80.0 bits (198), Expect = 2e-19
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 11 FGGVDVLINNAGVTV--KAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGH 68
FG +D+L+NNAG + ++ E +++ +N A+ T++ + + G
Sbjct: 104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK---GE 160
Query: 69 IIHINSI-AGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
I++++SI AG + Y+ +K A+ +L
Sbjct: 161 IVNVSSIVAGPQAHSGYPY--YACAKAALDQYTRCTAIDLIQH 201
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 79.6 bits (197), Expect = 3e-19
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ + G +++INNA +P + W+ I D+ + + T E K +
Sbjct: 95 VSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQ 154
Query: 64 VDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ I +I S +++K V +++ L E
Sbjct: 155 -KGAAFLSITTIYAETGSGFVVP--SASAKAGVEAMSKSLAAEWGKY 198
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 78.7 bits (195), Expect = 3e-19
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
VD+L+ NAG E +ED++ +D + + R L +MK +G G I+
Sbjct: 79 VKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIV 136
Query: 71 HINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKVTVSN 120
I S + ++++ A+T + L E+A +TV+
Sbjct: 137 AITSFSVISPIENLYT--SNSARMALTGFLKTLSFEVAPY----GITVNC 180
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 78.7 bits (195), Expect = 4e-19
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM--KN 61
F + GG+D+L+NNA + + + WR+I+DVN+ TR M
Sbjct: 71 FAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAG 130
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ G +I I S + Y A+K V L EL
Sbjct: 131 KA---GRVISIASNTFFAGTPNMAA--YVAAKGGVIGFTRALATELGKY 174
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 78.7 bits (195), Expect = 4e-19
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
F FG + + + AGV A E W ++L VN+ R+A + ++ G
Sbjct: 71 FAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGG 130
Query: 64 VDDGHIIHINSIAGHRLSIL----QGNEMYSASKHAVTILAEGLRRELASR 110
++ S+AG L + Y+A K V LA L ELA +
Sbjct: 131 S----LVLTGSVAG-----LGAFGLAH--YAAGKLGVVGLARTLALELARK 170
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 78.4 bits (194), Expect = 6e-19
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
G +D+++ NAG+ A + W ++DVN+ + + A+ ++ +G G I+
Sbjct: 100 LGRLDIVVANAGIAP----MSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQG-TGGSIV 154
Query: 71 HINSIAGHR--LSILQGNEMYSASKHAVTILAEGLRRELASR 110
I+S AG S G+ Y A+KH V L LA +
Sbjct: 155 LISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQ 196
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 78.9 bits (195), Expect = 7e-19
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
FG ++ L+NN G +P +S+ W +L+ N+ + S K
Sbjct: 91 VKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH 150
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G I++I + L + A++ V L + L E A
Sbjct: 151 G---GSIVNI-IVPTKAGFPLAVH--SGAARAGVYNLTKSLALEWACS 192
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 77.6 bits (192), Expect = 1e-18
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
FGG+DV+ NAGV APL+ E I VNV + L ++ +
Sbjct: 79 AGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG 138
Query: 63 GVDDGHIIHINSIAGHRL-SILQGNEMYSASKHAVTILAEGLRRELASR 110
G ++ +SI G + Y A+K A ELA
Sbjct: 139 S---GRVVLTSSITGPITGYPGWSH--YGATKAAQLGFMRTAAIELAPH 182
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 78.2 bits (193), Expect = 3e-18
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 10 NFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
NFG V V+INNAG+ A + + +D++ ++DV++ + T+ A + + G I
Sbjct: 88 NFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK--YGRI 145
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
++ +S AG + Q N Y+++K A+ AE L +E A
Sbjct: 146 VNTSSPAGLYGNFGQAN--YASAKSALLGFAETLAKEGAKY 184
Score = 73.6 bits (181), Expect = 1e-16
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 10 NFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
+G +D+L+NNAG+ ++ + ++W + V++I + +R A + G I
Sbjct: 392 KYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ--FGRI 449
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
I+I S +G + Q N YS+SK + L++ + E A
Sbjct: 450 INITSTSGIYGNFGQAN--YSSSKAGILGLSKTMAIEGAKN 488
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 76.0 bits (188), Expect = 5e-18
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 11 FGGVDVLINNAGV--TVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGH 68
G +D++ N GV T + EA +ED++R++D+NV + A + M G
Sbjct: 90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGS 147
Query: 69 IIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
I+ SI+ + + +Y+A+KHAV L L EL
Sbjct: 148 IVFTASISSFT-AGEGVSHVYTATKHAVLGLTTSLCTELGEY 188
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 76.0 bits (188), Expect = 6e-18
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 11 FGGVDVLINNAGVTVKAP-LSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
G +++L+NN L +E + +N+ + T+ AL +K +G I
Sbjct: 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLK-QG---DVI 178
Query: 70 IHINSIAGHRLSILQGNEM---YSASKHAVTILAEGLRRELASR 110
I+ SI +GNE YSA+K A+ L + L +
Sbjct: 179 INTASIVA-----YEGNETLIDYSATKGAIVAFTRSLSQSLVQK 217
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 75.6 bits (187), Expect = 6e-18
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
F + +D+L+NNAG+T + + ++W+ +++ N+ ++ ++E ++ M K R
Sbjct: 73 FAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR 132
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II I S+ G + Q N Y A+K V ++ L E+ASR
Sbjct: 133 W---GRIISIGSVVGSAGNPGQTN--YCAAKAGVIGFSKSLAYEVASR 175
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 75.7 bits (187), Expect = 6e-18
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
+ R G+D+L+NNAG+T +DW +L VN+ A S+ TRE + SM + R
Sbjct: 92 AEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR 151
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I SI G + Q N Y A+K + ++ L +E+ASR
Sbjct: 152 Y---GRIINITSIVGVVGNPGQTN--YCAAKAGLIGFSKALAQEIASR 194
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 75.2 bits (186), Expect = 7e-18
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 10 NFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNRGVDDGH 68
+D+L+ NAG+T +D+ +++D+N+ A REA+K M + R G
Sbjct: 81 KTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRY---GR 137
Query: 69 IIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
II+I+SI G + Q N Y ASK + + + L E+A+R
Sbjct: 138 IINISSIVGIAGNPGQAN--YCASKAGLIGMTKSLSYEVATR 177
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 75.3 bits (186), Expect = 7e-18
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
F V + G V+VL++NAG++ A L E + ++++ N+ + A +SM +N+
Sbjct: 72 FTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK 131
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G +I I S++G Q N Y+ASK V +A + REL+
Sbjct: 132 F---GRMIFIGSVSGLWGIGNQAN--YAASKAGVIGMARSIARELSKA 174
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 75.3 bits (186), Expect = 7e-18
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 11 FGGVDVLINNAGVT--VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGH 68
G+ V +N GV+ + + + V IA + L ++ G
Sbjct: 78 NSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAML--AGD 135
Query: 69 IIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+A + Q + Y+ SK+AVT LA + A R
Sbjct: 136 EARAIELAEQQ---GQTHLAYAGSKYAVTCLARRNVVDWAGR 174
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 75.3 bits (186), Expect = 7e-18
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
+ + G V+VLI NAGVT L + ED+ +++ N+ + A ++M + +
Sbjct: 78 YKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK 137
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G ++ I+S+ G S Q N Y+ASK + A L REL SR
Sbjct: 138 K---GRVVLISSVVGLLGSAGQAN--YAASKAGLVGFARSLARELGSR 180
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 75.7 bits (187), Expect = 8e-18
Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
V FG +DV+ NAG+ +A L E +LDVNV + L + +
Sbjct: 110 ARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG 169
Query: 63 GVDDGHIIHINSIAGHRLSILQGN---EMYSASKHAVTILAEGLRRELASR 110
G +I +SI G + G Y ASK A ELA R
Sbjct: 170 R---GRVILTSSITGP----VTGYPGWSHYGASKAAQLGFMRTAAIELAPR 213
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 74.8 bits (185), Expect = 9e-18
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-K 60
+ FGGVD+L+NNAG+T L E+W I++ N+ ++ ++ L+ M K
Sbjct: 72 AVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMK 131
Query: 61 NRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
R G II++ S+ G + Q N Y+A+K V + + RE+ASR
Sbjct: 132 KRQ---GRIINVGSVVGTMGNAGQAN--YAAAKAGVIGFTKSMAREVASR 176
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 75.9 bits (187), Expect = 1e-17
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 10 NFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
FG +DV++NNAG+ S + EDW I V++ TR A MK + G I
Sbjct: 89 TFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRI 146
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
I S +G + Q N YSA+K + LA L E
Sbjct: 147 IMTASASGIYGNFGQAN--YSAAKLGLLGLANTLVIEGRKN 185
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 75.0 bits (185), Expect = 1e-17
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPL----SEAASEDWRRILDVNVIALSSCTREALKSM 59
+ + FG V L+N AG + A + + R + VN+I + R A + M
Sbjct: 72 LAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVM 131
Query: 60 KNRGVDD----GHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
D G I++ SIA I Q Y+ASK V L RELA
Sbjct: 132 SQGEPDADGERGVIVNTASIAAFDGQIGQAA--YAASKGGVAALTLPAARELARF 184
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 74.1 bits (183), Expect = 2e-17
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
+G +DV++NNAG+T L W ++D+N+ + CT+ A K M K R
Sbjct: 70 MKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR 129
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I S+ G +I Q N Y+A+K V ++ RE ASR
Sbjct: 130 K---GRIINIASVVGLIGNIGQAN--YAAAKAGVIGFSKTAAREGASR 172
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 74.1 bits (183), Expect = 2e-17
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
F+ + G+D+L+NNAG+T + DW +L VN+ T+ +L+ M K R
Sbjct: 76 FEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR 135
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++I+S+ G ++ Q N YS +K + + L +ELA R
Sbjct: 136 W---GRIVNISSVVGFTGNVGQVN--YSTTKAGLIGFTKSLAKELAPR 178
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 74.1 bits (183), Expect = 2e-17
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
F V +G +DVL+NNAG+T L +DW+ +LD+N+ + C+R A K M K R
Sbjct: 97 FAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR 156
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I S+ G + Q N YSA+K V L + + +ELASR
Sbjct: 157 S---GRIINIASVVGEMGNPGQAN--YSAAKAGVIGLTKTVAKELASR 199
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 73.7 bits (182), Expect = 3e-17
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
FG +D+L+NNAG+T + + + +DW +L+ N+ + CT+ K M K +
Sbjct: 74 VKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK 133
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I SIAG + Q N Y+ASK + + + +E A++
Sbjct: 134 S---GKIINITSIAGIIGNAGQAN--YAASKAGLIGFTKSIAKEFAAK 176
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 73.3 bits (181), Expect = 3e-17
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
FG VD+L+NNAGVT L E+W +++ N+ + CT+ + M + R
Sbjct: 73 VKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR 132
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++I S+ G + Q N Y A+K V L + +ELASR
Sbjct: 133 H---GRIVNIASVVGVTGNPGQAN--YVAAKAGVIGLTKTSAKELASR 175
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 73.3 bits (181), Expect = 4e-17
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
GG+D L+NNAG+T L EDW +L+ N+ A+ TREA+K M K R
Sbjct: 71 VHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR 130
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I++I S+ G + Q N Y ASK + + +E A R
Sbjct: 131 F---GRIVNITSVVGILGNPGQAN--YVASKAGLIGFTRAVAKEYAQR 173
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 73.3 bits (181), Expect = 4e-17
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
V FG +DVL+NNAG+T L ++W ++D N+ + +C ++A M + R
Sbjct: 73 IKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR 132
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+++S+ G + Q N Y A+K V L + RELASR
Sbjct: 133 S---GAIINLSSVVGAVGNPGQAN--YVATKAGVIGLTKSAARELASR 175
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 73.8 bits (182), Expect = 4e-17
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
+ + VD+L+NNAG+T +++W +L N+ +L T+ K M NR
Sbjct: 112 INKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR 171
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I+SI G ++ Q N YS+SK V + L +ELASR
Sbjct: 172 Y---GRIINISSIVGLTGNVGQAN--YSSSKAGVIGFTKSLAKELASR 214
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 74.3 bits (183), Expect = 4e-17
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 10 NFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVD---- 65
FGG+DVL+NNAG+ ++ + E++ ++ V++ + R A +
Sbjct: 111 TFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAV 170
Query: 66 DGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
DG II+ +S AG + S+ QGN YSA+K + L E+
Sbjct: 171 DGRIINTSSGAGLQGSVGQGN--YSAAKAGIATLTLVGAAEMGRY 213
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 73.3 bits (181), Expect = 4e-17
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 3 CFDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KN 61
FD V G +DVL+NNAG+T + EDW+ ++D N+ +L + T++ + M +
Sbjct: 81 AFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER 140
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I+S+ G + Q N YS +K + L +E+A++
Sbjct: 141 GW---GRIINISSVNGQKGQFGQTN--YSTAKAGIHGFTMSLAQEVATK 184
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 73.3 bits (181), Expect = 4e-17
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
+ + FG ++VL+NNAG+T ++W ++D N+ A+ +R L+ M K R
Sbjct: 96 VESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR 155
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G I++I S+ G + Q N Y+A+K V + L RE+ SR
Sbjct: 156 G---GRIVNITSVVGSAGNPGQVN--YAAAKAGVAGMTRALAREIGSR 198
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 73.4 bits (181), Expect = 5e-17
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 3 CFDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KN 61
C + V +FG VDVLINNAG+T A + DW ++ ++ A+ + T++ + M +
Sbjct: 93 CAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER 152
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
R G I++I S+ G R + Q N Y+++K + + L E A R
Sbjct: 153 RF---GRIVNIGSVNGSRGAFGQAN--YASAKAGIHGFTKTLALETAKR 196
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 73.0 bits (180), Expect = 6e-17
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 4 FDWVNR-NFGGVDVLINNAGV-------TVKAPLSEAASEDWRRILDVNVIALSSCTREA 55
F+ V+R G +DVL+NNA T E + W I +V + C+
Sbjct: 73 FEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYG 132
Query: 56 LKSMKNRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIK 115
+ M G G I+ I+S + + Y K A LA EL
Sbjct: 133 ARLMVPAG--QGLIVVISSPGSLQ-YMFNVP--YGVGKAACDKLAADCAHELRRH----G 183
Query: 116 VTV 118
V+
Sbjct: 184 VSC 186
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 72.7 bits (179), Expect = 8e-17
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPL-----SEAASEDWRRILDVNVIALSSCTREALKS 58
+ N+ ++ + G V + S A + + +D+ + + R S
Sbjct: 95 IEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAAS 154
Query: 59 M-KNRGVDDGH---IIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+ ++G ++ SIAG+ I Q Y+A+K V L R+L+S
Sbjct: 155 IAAAEPRENGERGALVLTASIAGYEGQIGQTA--YAAAKAGVIGLTIAAARDLSSA 208
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 71.9 bits (177), Expect = 1e-16
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPL------SEAASEDWRRILDVNVIALSSCTREALK 57
FG VDV +N AG+ V + ED++R+LDVN++ + R
Sbjct: 77 LALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAG 136
Query: 58 SM-KNRGVDDGH---IIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
M +N G II+ S+A + Q YSASK + + + R+LA
Sbjct: 137 EMGQNEPDQGGQRGVIINTASVAAFEGQVGQAA--YSASKGGIVGMTLPIARDLAPI 191
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 69.9 bits (172), Expect = 6e-16
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 9 RNFGGVDVLINNAGVTVKAPL----SEAASEDWRRILDVNVIALSSCTREALKSM-KNRG 63
+ + +++ AGV + + E +RR+L+VN++ + R A +M +N
Sbjct: 62 QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPP 121
Query: 64 VDDGH---IIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
+G I++ S+A I Q Y+ASK V L RELA
Sbjct: 122 DAEGQRGVIVNTASVAAFEGQIGQAA--YAASKGGVVALTLPAARELAGW 169
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 68.7 bits (169), Expect = 2e-15
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KNR 62
F + G +D +++ AG+T + EDW +L VN+ + A ++M +
Sbjct: 68 FAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN 127
Query: 63 GVDDGHIIHINSI-----AGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G I+ S G Q N Y+AS V L L EL
Sbjct: 128 P---GSIVLTASRVYLGNLG------QAN--YAASMAGVVGLTRTLALELGRW 169
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 68.8 bits (169), Expect = 2e-15
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 9 RNFGGVDVLINNAGVTVKAPL----SEAASEDWRRILDVNVIALSSCTREALKSM-KNRG 63
G + +++N AG + + +R+I+D+N++ + R A + + K
Sbjct: 75 ETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEP 134
Query: 64 VDD-----GHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
V G II+ S+A I Q YSASK V + + R+LAS
Sbjct: 135 VGPNAEERGVIINTASVAAFDGQIGQAA--YSASKGGVVGMTLPIARDLASH 184
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 69.1 bits (169), Expect = 4e-15
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 10 NFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHI 69
FG VD+L+NNAG+ L + + +DW + DV++ CT+ A MK + G I
Sbjct: 99 AFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQN--YGRI 156
Query: 70 IHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASRKSQIKV 116
I +S +G + Q N Y+A+K + LA + E A ++ +
Sbjct: 157 IMTSSNSGIYGNFGQVN--YTAAKMGLIGLANTVAIEGA--RNNVLC 199
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 67.7 bits (166), Expect = 5e-15
Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 35/130 (26%)
Query: 7 VNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDD 66
+ + G+D L+ AG+ ++ ++ VN + L ++K
Sbjct: 56 LAKCSKGMDGLVLCAGLG-------PQTKVLGNVVSVNYFGATELMDAFLPALKKGH--Q 106
Query: 67 GHIIHINSIAGHRLSILQ--------------------------GNEMYSASKHAVTILA 100
+ I+S+A L+ + GN Y+ SK+A+T+
Sbjct: 107 PAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAV 166
Query: 101 EGLRRELASR 110
Sbjct: 167 RKRAAAWGEA 176
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 68.5 bits (168), Expect = 6e-15
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 4 FDWVNRNFGG-VDVLINNAGVT---VKAPLSEAASEDWRRILDVNVIALSSCTREALKSM 59
V + GG VD+L+NNAG+T + A + E + W ++ VN++A T + +
Sbjct: 278 TAHVTEHHGGKVDILVNNAGITRDKLLANMDE---KRWDAVIAVNLLAPQRLTEGLVGNG 334
Query: 60 -KNRGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G G +I ++S+AG + Q N Y+ +K + LAE L LA +
Sbjct: 335 TIGEG---GRVIGLSSMAGIAGNRGQTN--YATTKAGMIGLAEALAPVLADK 381
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 67.6 bits (166), Expect = 6e-15
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 4 FDWVNRNFGGVDVLINNAG--VTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-K 60
+ +FG +D LINNAG V + L + ++W ++ N+ A+ + + M K
Sbjct: 76 VEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRK 135
Query: 61 NRGVDDGHIIHI--NSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+ I + ++A+K + L + + E A
Sbjct: 136 QNF---GRIINYGFQGADSAPGWIYRSA--FAAAKVGLVSLTKTVAYEEAEY 182
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 66.8 bits (164), Expect = 1e-14
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 4 FDWVNRNFGG-VDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM-KN 61
+ V F V+++ AG+T L + +DW +++ VN+ T+ A +++ N
Sbjct: 82 LEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSN 141
Query: 62 RGVDDGHIIHINSIAGHRLSILQGNEMYSASKHAVTILAEGLRRELASR 110
G II+I+SI G ++ Q N Y+ASK V L + REL
Sbjct: 142 G--CRGSIINISSIVGKVGNVGQTN--YAASKAGVIGLTQTAARELGRH 186
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 57.8 bits (140), Expect = 3e-11
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 12 GGVDVLINNAGVTVK-APLSEAASEDWRRILDVNVIALSSCTREAL---------KSMKN 61
G++VL NNAG+ K A ++ S++ L N + + L +
Sbjct: 101 QGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQP 160
Query: 62 RGVDDGHIIHINSIAGHRLSI----LQGNEMYSASKHAVTILAEGLRRELASRKSQIKV 116
GV II+++SI G SI G Y SK A+ + L +L ++ I
Sbjct: 161 MGVGRAAIINMSSILG---SIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQR--IMC 214
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 55.8 bits (135), Expect = 1e-10
Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 43/153 (28%)
Query: 5 DWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGV 64
D++ + +GG+DVL+NNAG+ K + N E L +K
Sbjct: 74 DFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIK---- 129
Query: 65 DDGHIIHINSIAGHRLSILQGNEM------------------------------------ 88
G +++++SI R E+
Sbjct: 130 PQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWP 189
Query: 89 ---YSASKHAVTILAEGLRRELASRKSQIKVTV 118
Y +K VT+L+ R+L+ ++ K+ +
Sbjct: 190 SSAYGVTKIGVTVLSRIHARKLSEQRKGDKILL 222
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 54.3 bits (131), Expect = 4e-10
Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 13 GVDVLINNAGVTV-KAPLSEAASEDWRRILDVNVIALSSCTREAL---------KSMKNR 62
G+ +LINNAGV + +E LDVN ++ T++ L +S
Sbjct: 81 GLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQL 140
Query: 63 GVDDGHIIHINSIAGHRLSILQGNEM--------YSASKHAVTILAEGLRRELASRKSQI 114
V +I I+S G SI Y SK A+ + L +L +
Sbjct: 141 SVSRAAVITISSGLG---SITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDN--V 195
Query: 115 KV 116
V
Sbjct: 196 LV 197
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 38.4 bits (89), Expect = 2e-04
Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 77/183 (42%)
Query: 5 DWVNRNFGGVDVLINNAGVTVKAPLSEAAS------------------------------ 34
D++ +FG +D+L+NNAGV + ++
Sbjct: 83 DFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETY 142
Query: 35 EDWRRILDVNVIALSSCTREALKSMKNRGVDDGHIIHINSIAGHR--------------- 79
E L +N + S T + ++ I++++S G
Sbjct: 143 ELAEECLKINYNGVKSVTEVLIPLLQLSD--SPRIVNVSSSTGSLKYVSNETALEILGDG 200
Query: 80 --LSILQGNEM------------------------YSASKHAVTILAEGLRRELASRKSQ 113
L+ + + + Y+ SK + R LA++ +
Sbjct: 201 DALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYT----RVLANKIPK 256
Query: 114 IKV 116
+V
Sbjct: 257 FQV 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.005
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query: 47 ALSSCTREALKSMKNRGVDDGHIIHINSIAGHRLSILQGNEMYSA 91
AL+ + A + +K++G+ + AGH S+ G E Y+A
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPAD----ATFAGH--SL--G-E-YAA 1769
Score = 29.6 bits (66), Expect = 0.28
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 32/111 (28%)
Query: 13 GVDVL--INNAGVT------VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGV 64
G+++L + N T + P+S +I + + + K G
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPIS------------CPLIGVIQLAHYVV-TAKLLGF 258
Query: 65 DDGHII-HINSIAGHRLSIL---------QGNEMYSASKHAVTILAE-GLR 104
G + ++ GH ++ + + + A+T+L G+R
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 30.3 bits (69), Expect = 0.11
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 10 NFGGVDVLINNAGV 23
G DVLINNAG+
Sbjct: 83 GVSGADVLINNAGI 96
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 30.0 bits (68), Expect = 0.16
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 24/102 (23%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
+ VN G D +++ G++V+ P + +IL N+I ++ + G
Sbjct: 55 ANAVNAMVAGCDGIVHLGGISVEKP--------FEQILQGNIIG----LYNLYEAARAHG 102
Query: 64 VDDGHIIHINSIA--GHRLSILQGNEM--------YSASKHA 95
I+ +S G+ + Y SK
Sbjct: 103 Q--PRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCF 142
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 29.1 bits (65), Expect = 0.36
Identities = 6/68 (8%), Positives = 16/68 (23%), Gaps = 5/68 (7%)
Query: 11 FGGVDVLINN--AGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGH 68
G + G+ + + + D N ++G + G
Sbjct: 186 VKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID---ATDKGKEYGG 242
Query: 69 IIHINSIA 76
++
Sbjct: 243 KRAFGALG 250
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 28.3 bits (63), Expect = 0.64
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 3 CFDWVNRNFGGVDVLINNAGV--TVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMK 60
+ V + G +D+L+++ V PL + + + + + + + S + L MK
Sbjct: 123 VAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLPLMK 182
Query: 61 NRG 63
G
Sbjct: 183 EGG 185
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB:
3fn1_A
Length = 98
Score = 26.8 bits (59), Expect = 1.0
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 14 VDVLINNAGVTVKAPLSEAASEDWRRILDV-NVIALSSCTREAL-KSMKNRGVDDGHIIH 71
+D L N+A + +K+P A E R L + +V ++ TR L K++K G+ DG +
Sbjct: 21 LDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELA 80
Query: 72 INSIA 76
+ +
Sbjct: 81 VADVT 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.1
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 45 VIALSSCTREALKSMKNRGV----------DDGHIIHINSIAGHRL--SILQGNEMYSAS 92
+AL C ++ + + + + + + +++ + ++ S
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223
Query: 93 KHAVTILAEGLRRELASRK 111
K + + LRR L S+
Sbjct: 224 KLRIHSIQAELRRLLKSKP 242
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 27.3 bits (61), Expect = 1.3
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 24/102 (23%)
Query: 4 FDWVNRNFGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRG 63
V+ D +I+ GV+V+ P W IL N+I ++ +N G
Sbjct: 54 AQAVHDLVKDCDGIIHLGGVSVERP--------WNDILQANIIG----AYNLYEAARNLG 101
Query: 64 VDDGHIIHINSIA--GHRLSILQGNEM--------YSASKHA 95
I+ +S G+ + + Y SK
Sbjct: 102 K--PRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCF 141
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 27.2 bits (61), Expect = 1.4
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLS----EAAS-EDWRRILDVNVIALSSCTREAL 56
F + + + G+D ++++ + L + + E + D++ + ++ +E
Sbjct: 92 DLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGR 151
Query: 57 KSMKNRG 63
MKNR
Sbjct: 152 SMMKNRN 158
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 26.7 bits (59), Expect = 2.1
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 3 CFDWVNRNFGGVDVL---INNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSM 59
V ++ G +D+L + N V PL E + + + + + S + M
Sbjct: 110 VAVKVKQDLGNIDILVHSLANGP-EVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPIM 168
Query: 60 KNRG 63
G
Sbjct: 169 NEGG 172
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 26.4 bits (59), Expect = 2.3
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLS----EAASEDWRRILDVNVIALSSCTREALK 57
++ N+G +D+++++ K + + E ++ +D++V +L + TRE L
Sbjct: 88 NLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLP 147
Query: 58 SMKNRG 63
M+ R
Sbjct: 148 LMEGRN 153
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 26.4 bits (59), Expect = 2.4
Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLS----EAAS-EDWRRILDVNVIALSSCTREAL 56
T F + + + D +++ G L A + E ++ D++ + + +
Sbjct: 76 TMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACR 135
Query: 57 KSMKNRG 63
+
Sbjct: 136 SMLNPGS 142
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 26.2 bits (58), Expect = 2.8
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 3 CFDWVNRNFGGVDVLINNAGVT--VKAPLSEAASEDWRRILDVNVIALSSCTREALKSMK 60
+ V ++FG +D+L+++ V PL E + + + + + + S L M
Sbjct: 109 AAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMN 168
Query: 61 NRG 63
G
Sbjct: 169 PGG 171
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 26.5 bits (59), Expect = 2.9
Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLS----EAASEDWRRILDVNVIALSSCTREALK 57
F + +G +D +++ + K L + + ++ + ++ + + +A
Sbjct: 97 NMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEP 156
Query: 58 SMKNRG 63
M N G
Sbjct: 157 LMTNGG 162
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 26.4 bits (59), Expect = 2.9
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 3 CFDWVNRNFGGVDVLINNAGVTVKAPLS----EAASEDWRRILDVNVIALSSCTREALKS 58
F V FGG+D L++ + + + +DW L+V+ +L + R A
Sbjct: 76 LFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPL 135
Query: 59 MKNRG 63
++ G
Sbjct: 136 LREGG 140
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 26.4 bits (58), Expect = 3.1
Identities = 9/63 (14%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 3 CFDWVNRNFGGVDVLINNAGV--TVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMK 60
+ +++ +G +++L+++ V+ L + + + L + +L S + + MK
Sbjct: 103 VANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMK 162
Query: 61 NRG 63
+
Sbjct: 163 PQS 165
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 26.0 bits (58), Expect = 3.1
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLS----EAASEDWRRILDVNVIALSSCTREALK 57
TCF + G + + + K L + + +++ +L++ + A
Sbjct: 76 TCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARP 135
Query: 58 SMKNRG 63
M G
Sbjct: 136 MMTEGG 141
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 26.1 bits (58), Expect = 3.3
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 3 CFDWVNRNFGGVDVLINNAGVTVKAPLS----EAASEDWRRILDVNVIALSSCTREALKS 58
F+ + ++ G +D + ++ L E + E + D++ +L+ EA K
Sbjct: 102 GFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKL 161
Query: 59 MKNRG 63
M G
Sbjct: 162 MPEGG 166
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 26.1 bits (58), Expect = 3.7
Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLS----EAASEDWRRILDVNVIALSSCTREALK 57
F+ + + +G +D L++ G + K L+ + + ++ + ++V +L++ +R A K
Sbjct: 98 AVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEK 157
Query: 58 SMKNRG 63
M + G
Sbjct: 158 LMADGG 163
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 26.0 bits (58), Expect = 3.8
Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 2 TCFDWVNRNFGGVDVLINNAGVTVKAPLS----EAASEDWRRILDVNVIALSSCTREALK 57
+ ++ V ++ G +D ++++ K L E + + ++++V +L T
Sbjct: 73 SLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKP 132
Query: 58 SMKNRG 63
+ N
Sbjct: 133 LLNNGA 138
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond
formation; 3.10A {Deinococcus radiodurans} SCOP:
i.1.1.2 PDB: 1sm1_E*
Length = 212
Score = 25.6 bits (57), Expect = 4.2
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 13 GVDVLINNAGVTVKAPLSE 31
GV V + VK P E
Sbjct: 41 GVTVNAQDGVFKVKGPKGE 59
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G*
2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G*
2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Length = 176
Score = 25.5 bits (57), Expect = 4.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 13 GVDVLINNAGVTVKAPLSE 31
GVDV IN +T+K E
Sbjct: 13 GVDVKINGQVITIKGKNGE 31
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin
resistance, alpha/beta protein; 2.00A {Geobacillus
stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB:
1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H
1eg0_J 487d_J
Length = 177
Score = 25.5 bits (57), Expect = 4.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 13 GVDVLINNAGVTVKAPLSE 31
GV V +N VTVK P E
Sbjct: 13 GVTVTVNGNTVTVKGPKGE 31
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E*
1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E*
3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H
1vp0_H
Length = 185
Score = 25.5 bits (57), Expect = 4.4
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 13 GVDVLINNAGVTVKAPLSE 31
GV V + VK P E
Sbjct: 14 GVTVNAQDGVFKVKGPKGE 32
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 223
Score = 25.7 bits (57), Expect = 5.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 13 GVDVLINNAGVTVKAPLSE 31
V + + + VK PL E
Sbjct: 56 NVTIALEGQDLKVKGPLGE 74
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H
2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H
2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Length = 180
Score = 25.1 bits (56), Expect = 5.5
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 13 GVDVLINNAGVTVKAPLSE 31
GV V + V VK P E
Sbjct: 14 GVSVEVAPGRVKVKGPKGE 32
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 25.0 bits (55), Expect = 7.2
Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 11 FGGVDVLINNAGVTVKAPLSEAASEDWRRILDVNVIALSSCTREALKSMKNRGVDDGHII 70
F +D ++ AG + + +++ + ++ + RG+ I
Sbjct: 82 FASIDAVVFAAGSG--------PHTGADKTILIDLWG----AIKTIQEAEKRGIK--RFI 127
Query: 71 HINSI-AGHRLSILQGNEMYSASKHA 95
++S+ Y +K
Sbjct: 128 MVSSVGTVDPDQGPMNMRHYLVAKRL 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.384
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,914,021
Number of extensions: 103738
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 232
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)