BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6649
(242 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242015304|ref|XP_002428304.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212512889|gb|EEB15566.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 287
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 140/210 (66%)
Query: 8 ELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDY 67
ELGLILL +L G IPP TLG + Q+++Y+ I PW +VCIS +++I +D+
Sbjct: 11 ELGLILLFNELLIFGMKNIPPVTLGAILGQTLLYMGIINVPWEKEEVCISGNSIINDKDW 70
Query: 68 KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
KRL LSA EHGDDMHLY+NM S ++KGR LE YG F ++ FLT+ TSL Y++LA+I
Sbjct: 71 KRLFLSAVEHGDDMHLYFNMASFLIKGRSLEARYGSKNFAIILTFLTIVTSLMYVILAFI 130
Query: 128 VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL 187
+ + TS + CAIGFS V+FA+K + T +P +L +++ YA W ELIII++
Sbjct: 131 MSNVMEATSYMDSCAIGFSGVIFALKVLTTHEEPYIRAMLLGVDIPGKYAAWVELIIIHM 190
Query: 188 LVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
LVPN+SF GH +GIL G+ Y + IG LD
Sbjct: 191 LVPNSSFMGHFAGILSGVIYCKSFIGLFLD 220
>gi|242006593|ref|XP_002424134.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212507451|gb|EEB11396.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 236
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 133/211 (63%), Gaps = 4/211 (1%)
Query: 20 HLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGD 79
G IPP TLG + Q+++Y+ PW DVC+S + +++ +D+KRL LSA EHGD
Sbjct: 23 QFGMKNIPPITLGSIVGQTLLYMGFINVPWDKEDVCLSGNGILKLKDWKRLFLSALEHGD 82
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS 139
DMHLYYNM S ++KGR LEK YG F ++IFLT+ TS Y+LLA + + + S +
Sbjct: 83 DMHLYYNMASFLIKGRSLEKRYGSKCFAIILIFLTILTSGIYVLLAQAMSEVFENDSYMK 142
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
CAIGFS V+FA+K + T +P ++ + + YA W ELI+I+LLVPN+SF GHL+
Sbjct: 143 SCAIGFSGVIFALKVLTTHEEPSLRATLVGVQIPGKYAAWIELILIHLLVPNSSFMGHLA 202
Query: 200 GILVGLTYTDTPIGWGLDYVVDKCQEMINGE 230
GIL G+ Y +T G V+DK + G
Sbjct: 203 GILAGVIYCNTIFG----NVLDKSISFLTGN 229
>gi|322802448|gb|EFZ22798.1| hypothetical protein SINV_10941 [Solenopsis invicta]
Length = 247
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 140/224 (62%), Gaps = 4/224 (1%)
Query: 1 MTRPRRY----ELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCI 56
M R RR E G+ +L + +L+ G D IPPATL V Q+++Y + R PW+ +VCI
Sbjct: 1 MIRNRRRQQGLETGIFMLCMQVLNFGLDKIPPATLIGVIAQTLLYAGLIRVPWNAEEVCI 60
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF 116
SA +I+ +D++ LS FEHG DMHLYYNM+S ILKG LE +YG F+ L+ L+
Sbjct: 61 SAVKIIKYKDWRSFFLSNFEHGSDMHLYYNMISFILKGSYLEPLYGTTNFVLLLAILSFG 120
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIY 176
S+ Y+ L YI+ +T D + CAIGFSA LFA+K + + D I V +
Sbjct: 121 CSVMYVSLGYILMQLTGDYGYFTACAIGFSATLFALKVVALCEERDKLHNISGFIVPSKL 180
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVV 220
A WFELI+I+LLVPN+SF GHL GILVG Y+ T IG LD ++
Sbjct: 181 AVWFELILIHLLVPNSSFIGHLGGILVGCLYSYTFIGETLDNLI 224
>gi|332024419|gb|EGI64617.1| Rhomboid domain-containing protein 1 [Acromyrmex echinatior]
Length = 246
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 146/240 (60%), Gaps = 12/240 (5%)
Query: 1 MTRPRR---YELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCIS 57
M R RR + G+ LL + L+ G D IPPATL + Q+++Y+ + R W+ DVCIS
Sbjct: 1 MMRQRRQQGLQNGIFLLCMQALNFGLDKIPPATLIGIIAQTLLYMGLIRVSWNAEDVCIS 60
Query: 58 ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT 117
A +I+ ++++ LS FEHG DMHLYYNM+S ILKG LE IYG F+ L+ L++
Sbjct: 61 AIKIIKYKNWRSFFLSNFEHGSDMHLYYNMLSFILKGSYLEPIYGTMNFVLLLGVLSIGC 120
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
S Y+ L YI+ +T D + CAIGFSA LFA+K I + D Q I + V + A
Sbjct: 121 SAMYVFLGYILMQLTGDYGYFTACAIGFSATLFALKVIALCEERDKLQNINGLIVPSKIA 180
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMING-----EEQ 232
W ELI+I+LLVPN+SF GHL GILVG Y+ + +G +D ++ MI G EEQ
Sbjct: 181 VWLELILIHLLVPNSSFIGHLGGILVGCLYSYSFVGERIDNLI----HMITGTPIIHEEQ 236
>gi|383847955|ref|XP_003699618.1| PREDICTED: rhomboid domain-containing protein 1-like [Megachile
rotundata]
Length = 247
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 133/215 (61%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R + + G+ LL + ++ G D IPPATL + LQ ++Y+ + + PW+ +VCIS +
Sbjct: 7 RQQGLQYGIYLLCLQAINFGIDKIPPATLTSIILQVLLYIGLIKVPWNAEEVCISTIKIF 66
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ RD+K I+S FEHG DMHLYYNMVSLILKG LE +YG F+ L+ L+ S Y
Sbjct: 67 KYRDWKSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYGTMNFVILLAVLSFGCSAMYT 126
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L Y + +T D + CAIGFSAVLFA+K I+ + D + + V + A W EL
Sbjct: 127 SLGYALMQLTGDYGYYTQCAIGFSAVLFALKVIVVCEEQDRIHDVGGLRVPSKIAVWVEL 186
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
I+I+LLVP +SF GHL GILVG Y T +G +D
Sbjct: 187 ILIHLLVPQSSFVGHLGGILVGCLYCYTFVGEMID 221
>gi|321459244|gb|EFX70299.1| hypothetical protein DAPPUDRAFT_300486 [Daphnia pulex]
Length = 312
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 137/218 (62%), Gaps = 1/218 (0%)
Query: 1 MTRPRR-YELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISAD 59
M R RR E+G++LL+ +L+ G +T PP T+ +V Q +++ + W VC+SA
Sbjct: 1 MARQRRGIEMGVLLLMWQLLNTGLETFPPVTILVVAGQVCLFMGLIPVSWDAGGVCLSAQ 60
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
AV++ R+Y+RL+LSA EH DD+HLYYNM+S + KGR LE+ +G F L+ TV TS+
Sbjct: 61 AVLKWREYERLVLSALEHADDLHLYYNMLSFLSKGRSLERHFGSPYFAYLLSVFTVLTSV 120
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
Y+ L ++ + +D CAIGFS V+FA+K + T Y++ I V YA W
Sbjct: 121 TYVGLEVLLSELLHDKQHYKTCAIGFSGVIFALKVLTTSYWESGYRRYFGIRVSGKYAVW 180
Query: 180 FELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
ELI I L+VPN SF GHL+GILVG+ YT P+ + +D
Sbjct: 181 VELIAIQLMVPNTSFVGHLAGILVGVAYTQGPLKFIMD 218
>gi|197304727|ref|NP_001127873.1| rhomboid domain containing 1 [Nasonia vitripennis]
Length = 246
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 137/223 (61%), Gaps = 4/223 (1%)
Query: 8 ELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDY 67
+ GL+LL ++ G D IPPATL + +QS++Y + + PW+ DVCIS +++ +D+
Sbjct: 12 QYGLVLLASQAMNFGIDKIPPATLLGMAVQSLLYAGMIKVPWNPEDVCISTLKILKHKDW 71
Query: 68 KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+ ++S FEHG DMHLYYNMVS +LKG LE +YG F L+ L++ S Y+ L Y
Sbjct: 72 RSFVVSNFEHGSDMHLYYNMVSFLLKGSYLEPMYGTANFALLIGLLSLGCSSMYVFLGYA 131
Query: 128 VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL 187
+ IT D + + CAIGFSAVLFA+K I+ + D + V + +A W EL++I+L
Sbjct: 132 LTQITTDYAYYTSCAIGFSAVLFALKVIVVCEEHDRPTDVGGFRVPSKFAVWAELVLIHL 191
Query: 188 LVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGE 230
LVPN+SF GHL GILVG Y T +G +VD I G
Sbjct: 192 LVPNSSFIGHLGGILVGCLYCYTFVG----EIVDSKLSTITGR 230
>gi|307213224|gb|EFN88719.1| Rhomboid domain-containing protein 1 [Harpegnathos saltator]
Length = 247
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 135/218 (61%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R + + G+ LL +++G D IPPATL V Q+++Y+ + + PW+ +VCISA +
Sbjct: 7 RQQGLQYGIYLLFTQTINIGIDRIPPATLIGVISQTLLYIGLIKVPWNAEEVCISAVKIF 66
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ ++++ S FEHG DMHLYYNM+S ILKG LE IYG F+ L+ L+ S Y+
Sbjct: 67 KYKNWRSFFFSNFEHGSDMHLYYNMISFILKGSYLEPIYGTMNFVLLLFILSTGCSAMYV 126
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L YI+ +T D + CAIGFSA LFA+K I + D I V++ A W EL
Sbjct: 127 SLGYILMQLTGDYGYYTTCAIGFSATLFALKVIALCEERDRLHNINGFQVQSKLAVWVEL 186
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVV 220
I+I+LLVPNASF GHL GILVG Y+ T +G +D ++
Sbjct: 187 ILIHLLVPNASFVGHLGGILVGCLYSYTFVGEIIDNMI 224
>gi|340725934|ref|XP_003401319.1| PREDICTED: rhomboid domain-containing protein 1-like [Bombus
terrestris]
Length = 247
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 132/215 (61%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R + + G+ LL + L+ G D IPPATL + Q ++Y+ + + PW+ +VCISA V
Sbjct: 7 RQQGLQYGIYLLCMQALNYGIDKIPPATLITIIAQVLLYVGLIKVPWNAEEVCISAIKVF 66
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ RD+ ++S FEHG DMHLYYNMVSLILKG LE +YG F+ L+ L+ S Y
Sbjct: 67 KYRDWNSFLISNFEHGSDMHLYYNMVSLILKGSYLEPMYGTINFVILLAILSFGCSTMYA 126
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L Y + +T D + CAIGFSA+LFA+K I+ + D Q + V + A W EL
Sbjct: 127 GLGYALMQLTGDYGYYTQCAIGFSAILFALKVIVVCEEYDRIQDVGGFRVSSKIAVWVEL 186
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
I+I+LLVP +SF GHL GILVG Y T IG +D
Sbjct: 187 ILIHLLVPQSSFIGHLGGILVGCLYCYTFIGEIVD 221
>gi|350397339|ref|XP_003484847.1| PREDICTED: rhomboid domain-containing protein 1-like [Bombus
impatiens]
Length = 247
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 131/215 (60%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R + + G+ LL + L+ G D IPPATL + Q ++Y+ + + PW+ +VCISA V
Sbjct: 7 RQQGLQYGIYLLCMQALNYGIDKIPPATLITIIAQVLLYVGLIKVPWNAEEVCISAIKVF 66
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ D+ ++S FEHG DMHLYYNMVSLILKG LE +YG F+ L+ L+ S Y
Sbjct: 67 KYHDWNSFLISNFEHGSDMHLYYNMVSLILKGSYLEPMYGTINFVMLLAILSFGCSTMYA 126
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L Y + +T D + CAIGFSA+LFA+K I+ + D Q + V + A W EL
Sbjct: 127 GLGYALMQLTGDYGYYTQCAIGFSAILFALKVIVVCEEYDRIQDVGGFRVSSKIAVWVEL 186
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
I+I+LLVP +SF GHL GILVG Y T IG +D
Sbjct: 187 ILIHLLVPQSSFIGHLGGILVGCLYCYTFIGEIVD 221
>gi|380024431|ref|XP_003695999.1| PREDICTED: rhomboid domain-containing protein 1-like [Apis florea]
Length = 247
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 128/211 (60%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R + G+ LL + L+ G D IPPATL + Q ++Y+ + PW+ +VCISA +
Sbjct: 7 RQHGLQYGIYLLYIQALNFGIDKIPPATLLTIIAQVLLYIGFIKVPWNAEEVCISAIKIF 66
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ D+ I+S FEHG DMHLYYNMVSLILKG LE +Y F+ L+ L+ S YI
Sbjct: 67 KYHDWNSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYKTMNFIILLTILSFGCSTMYI 126
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L+Y++ +T D CAIGFSA+LFA+K I+ + D I + V + A W EL
Sbjct: 127 GLSYVLMQLTGDYGYYVQCAIGFSAILFALKVIVICEEYDKIHDIGGLRVPSKIAVWVEL 186
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIG 213
I+I+LLVP +SF GHL GIL+G Y T IG
Sbjct: 187 ILIHLLVPQSSFIGHLGGILIGCLYCYTFIG 217
>gi|328779994|ref|XP_001122441.2| PREDICTED: rhomboid domain-containing protein 1-like [Apis
mellifera]
Length = 247
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 128/211 (60%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R + G+ LL + L+ G D IPPATL + Q ++Y+ + PW+ +VCISA +
Sbjct: 7 RQHGLQYGIYLLYMQALNFGIDKIPPATLLTIIAQVLLYIGFIKVPWNAEEVCISAIKIF 66
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ D+ I+S FEHG DMHLYYNMVSLILKG LE +Y F+ L+ L+ S YI
Sbjct: 67 KYHDWNSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYKTMNFVILLTILSFGCSTMYI 126
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L+Y++ +T D CAIGFS++LFA+K I+ + D + + V + A W EL
Sbjct: 127 GLSYVLMQLTGDYGYYVQCAIGFSSILFALKVIVICEEYDRIHDVGGLRVPSKIAVWVEL 186
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIG 213
I+I+LLVP +SF GHL GIL+G Y T IG
Sbjct: 187 ILIHLLVPQSSFIGHLGGILIGCLYCYTFIG 217
>gi|196000606|ref|XP_002110171.1| hypothetical protein TRIADDRAFT_53891 [Trichoplax adhaerens]
gi|190588295|gb|EDV28337.1| hypothetical protein TRIADDRAFT_53891 [Trichoplax adhaerens]
Length = 348
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 133/204 (65%), Gaps = 5/204 (2%)
Query: 20 HLGADTIPPATLGLVFLQSMVYLNI---FRKPWSTLDVCISADAVIQQRDYKRLILSAFE 76
H+G D IPP TL + L S++++N+ +R P + +VCIS +V +++RLIL AF
Sbjct: 21 HVGLDRIPPITLATIGLNSILFMNLLPDYRLPHLS-EVCISVKSVWYMNEWQRLILGAFF 79
Query: 77 HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTS 136
H DMHLYYNMVS + KG LEK YG FLS++I T T++ + ++Y + + T+
Sbjct: 80 HASDMHLYYNMVSFLWKGIHLEKKYGSLHFLSMIISFTALTNVTLVAISYAIGHHTDKLH 139
Query: 137 ELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFK 195
+ CA+GFS V+FA+K + T + P + I+N I + + YA W EL++I +LVPN+SF
Sbjct: 140 YFTDCAVGFSGVIFALKVVATYVSPPSTNYIMNLIPISSRYACWAELVLIQVLVPNSSFL 199
Query: 196 GHLSGILVGLTYTDTPIGWGLDYV 219
GHL+GILVGL Y TPIG LD +
Sbjct: 200 GHLAGILVGLAYVKTPIGSILDSI 223
>gi|344292440|ref|XP_003417935.1| PREDICTED: rhomboid domain-containing protein 1-like [Loxodonta
africana]
Length = 315
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 129/239 (53%), Gaps = 11/239 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GLILLL I H+G + IPP TL + L + ++LN + D CIS +
Sbjct: 4 RSRGINIGLILLLSQIFHVGINNIPPVTLATLALNTWLFLNPVKP---LFDSCISVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS F H DD HLY+NM S++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPFHHADDWHLYFNMASMLWKGINLERRLGSRWFAYIIATFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + ++ CA+GFS VLFA+K + P + IL + V YA W EL
Sbjct: 121 LLESSLAAFLDEPDFRRTCAVGFSGVLFALKVLNNHYCPGCFVNILGLPVPNRYACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQ 241
+ I+ P SF GHL+GILVGL YT P+ K E G D+G ++Q
Sbjct: 181 VAIHFFTPGTSFAGHLAGILVGLMYTQGPL--------KKIMETCAGIFSSDIGYPRQQ 231
>gi|12853402|dbj|BAB29735.1| unnamed protein product [Mus musculus]
Length = 315
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 9/222 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
R R GL+LLL + +G + IPP TL + + +LN PW L CIS +
Sbjct: 4 RTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
QQ+D++RL+LS HGDD HLY+NMVS++ KG +LE+ G F ++ ++ T + Y
Sbjct: 60 YQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + V + N +CA+GFS VLFA+K + P + IL V +A W E
Sbjct: 120 LLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
L+ I+ P SF GHL+GILVGL YT P L ++D C
Sbjct: 180 LVAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDTC 217
>gi|67846060|ref|NP_001020062.1| rhomboid-related protein 4 [Rattus norvegicus]
gi|81908697|sp|Q4V8F3.1|RHBL4_RAT RecName: Full=Rhomboid-related protein 4; Short=RRP4; AltName:
Full=Rhomboid domain-containing protein 1;
Short=rRHBDD1; AltName: Full=Rhomboid-like protein 4
gi|66910605|gb|AAH97416.1| Rhomboid domain containing 1 [Rattus norvegicus]
Length = 316
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 123/222 (55%), Gaps = 9/222 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
R R + GL+LLL + H+G + IPP TL + + +LN PW L CIS +
Sbjct: 4 RTRGIDTGLLLLLSQVFHIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
QQ D++RL+LS HGDD HLY+NMVS++ KG +LEK G F ++ ++ T + Y
Sbjct: 60 YQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLTGVVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + + N +CA+GFS VLFA+K + P + IL V +A W E
Sbjct: 120 LLLQFASAELMNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
L I+ P SF GHL+GILVGL YT P L ++D C
Sbjct: 180 LAAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDAC 217
>gi|170014730|ref|NP_084053.3| rhomboid-related protein 4 [Mus musculus]
gi|170014732|ref|NP_001116157.1| rhomboid-related protein 4 [Mus musculus]
gi|81896101|sp|Q8BHC7.1|RHBL4_MOUSE RecName: Full=Rhomboid-related protein 4; Short=RRP4; AltName:
Full=Rhomboid domain-containing protein 1;
Short=mRHBDD1; AltName: Full=Rhomboid-like protein 4
gi|26325686|dbj|BAC26597.1| unnamed protein product [Mus musculus]
gi|26345628|dbj|BAC36465.1| unnamed protein product [Mus musculus]
gi|26347997|dbj|BAC37647.1| unnamed protein product [Mus musculus]
gi|64213941|gb|AAY41235.1| MSD-50 [Mus musculus]
gi|74209284|dbj|BAE25005.1| unnamed protein product [Mus musculus]
gi|148670185|gb|EDL02132.1| rhomboid domain containing 1, isoform CRA_a [Mus musculus]
gi|148670187|gb|EDL02134.1| rhomboid domain containing 1, isoform CRA_a [Mus musculus]
Length = 315
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 9/222 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
R R GL+LLL + +G + IPP TL + + +LN PW L CIS +
Sbjct: 4 RTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
QQ+D++RL+LS HGDD HLY+NMVS++ KG +LE+ G F ++ ++ T + Y
Sbjct: 60 YQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + V + N +CA+GFS VLFA+K + P + IL V +A W E
Sbjct: 120 LLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
L+ I+ P SF GHL+GILVGL YT P L ++D C
Sbjct: 180 LVAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDTC 217
>gi|148670186|gb|EDL02133.1| rhomboid domain containing 1, isoform CRA_b [Mus musculus]
Length = 296
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 9/222 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
R R GL+LLL + +G + IPP TL + + +LN PW L CIS +
Sbjct: 4 RTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
QQ+D++RL+LS HGDD HLY+NMVS++ KG +LE+ G F ++ ++ T + Y
Sbjct: 60 YQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + V + N +CA+GFS VLFA+K + P + IL V +A W E
Sbjct: 120 LLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
L+ I+ P SF GHL+GILVGL YT P L ++D C
Sbjct: 180 LVAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDTC 217
>gi|13529623|gb|AAH05518.1| Rhomboid domain containing 1 [Mus musculus]
Length = 315
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 9/222 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
R R GL+LLL + +G + IPP TL + + +LN PW L CIS +
Sbjct: 4 RTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
QQ+D++RL+LS HGDD HLY+NMVS++ KG +LE+ G F ++ ++ T + Y
Sbjct: 60 YQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + V + N +CA+GFS VLFA+K + P + IL V +A W E
Sbjct: 120 LLLQFTVAELMNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
L+ I+ P SF GHL+GILVGL YT P L ++D C
Sbjct: 180 LVAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDMC 217
>gi|148237462|ref|NP_001087563.1| rhomboid domain containing 1 [Xenopus laevis]
gi|51258484|gb|AAH80107.1| MGC84665 protein [Xenopus laevis]
Length = 306
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 118/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LL + G IPP TL + L ++LN KP L VCIS
Sbjct: 4 RQRGINAGLVLLFAQLYQFGIHNIPPVTLAALGLNIYLFLNPL-KP--LLKVCISVREGY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
RD++R +LS F H DD HLY+NMVSL+ KG +LE+ G G F S+++ + + Y+
Sbjct: 61 YGRDWQRFLLSPFHHADDWHLYFNMVSLLWKGAKLERRLGTGLFASIILVFSQLIGVVYV 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L Y++ T D S CA+GFS VLFA+K + P + I + YA W EL
Sbjct: 121 ILEYVLAEFTGDPSFKMQCAVGFSGVLFALKVLNNHYHPGGSSNVFGILIPNKYACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+LL P SF GHLSGILVGL YT P+
Sbjct: 181 VAIHLLSPGTSFVGHLSGILVGLLYTQGPL 210
>gi|296205750|ref|XP_002749971.1| PREDICTED: rhomboid domain-containing protein 1 [Callithrix
jacchus]
Length = 316
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 120/210 (57%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINAGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPLKSLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ D++RL+LS F H DD HLY+NM S++ KG LEK G F+ ++ ++ T + Y+
Sbjct: 61 QQNDWQRLLLSPFHHADDWHLYFNMASMLWKGINLEKRLGSRWFVCVITTFSILTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNVLGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+L P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHLCSPGTSFAGHLAGILVGLMYTQGPL 210
>gi|443690109|gb|ELT92325.1| hypothetical protein CAPTEDRAFT_180450 [Capitella teleta]
Length = 356
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 132/212 (62%), Gaps = 2/212 (0%)
Query: 5 RRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQ 63
R L + LL+ ILH+G D +PP TLG + Q ++L + + P+ + +VC+S+ V
Sbjct: 5 RAPGLAIGLLVAQILHMGVDRVPPVTLGAIAAQVAIFLRLVKLPFGDIHEVCVSSLNVWY 64
Query: 64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
+ D+KRL L++F H D+ HLY+NMVS++ KG LE+ G F +V+ +V T+ +
Sbjct: 65 RGDWKRLFLASFYHLDEWHLYFNMVSMLWKGVNLERRLGSAYFAYMVLVFSVLTNAILVG 124
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFEL 182
L I I +D S +S CA GFS VLFA+K + L P Q ++N I V + A W EL
Sbjct: 125 LGVIAEEILHDHSYISTCAAGFSGVLFALKVVAAHLSPPTTQYVMNIIPVNSRLACWAEL 184
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGW 214
++I++LVPN+SF GHL+GILVGL Y P+ +
Sbjct: 185 LLIHILVPNSSFVGHLAGILVGLLYIKGPLKY 216
>gi|149711182|ref|XP_001496461.1| PREDICTED: rhomboid domain-containing protein 1-like [Equus
caballus]
Length = 316
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 127/226 (56%), Gaps = 7/226 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L ++LN + S + C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWLFLNPLK---SLYNSCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS F H DD HLY+NM S++ KG LE+ G F ++I ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPFHHADDWHLYFNMASMLWKGINLERRLGSKWFAYIIITFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + ++ +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 FLEFALAEFMDEPDFRRNCAVGFSGVLFALKVLNNHYCPGGFVNVLGFPVPNKFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMIN 228
+ I+ + P SF GHL+GILVGL YT P L +++ C M +
Sbjct: 181 VAIHFISPGTSFAGHLAGILVGLMYTHGP----LKKIMETCAGMFS 222
>gi|345307084|ref|XP_001505522.2| PREDICTED: rhomboid domain-containing protein 1-like
[Ornithorhynchus anatinus]
Length = 318
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 130/233 (55%), Gaps = 9/233 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
+ RR GL+LL I +G IPP TL + L ++LN + S CIS +
Sbjct: 4 KSRRVNAGLLLLFSQIAQIGITNIPPVTLASLALNIFLFLNPVK---SLRKTCISVEECF 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+Q D++RL+LS F H DD HLY+NMVS++ KG +LEK G GKF ++ +V + Y+
Sbjct: 61 EQGDWQRLLLSPFHHADDWHLYFNMVSMLWKGMKLEKRLGSGKFAIIIASFSVLIGIVYM 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L + + + + CA+GFS VLFA+K + P ++ V Y+ W EL
Sbjct: 121 ILEFALAEFLAEPAYKMQCAVGFSGVLFALKVLNNHYHPGGSINLMGFPVSNRYSCWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEM--INGEEQE 233
+ I+LL P SF GHL+GILVGL YT P L ++++C ++ +NG E
Sbjct: 181 VAIHLLSPGTSFAGHLAGILVGLMYTLGP----LKTILERCADIFSLNGGYSE 229
>gi|73994096|ref|XP_543275.2| PREDICTED: rhomboid domain-containing protein 1 [Canis lupus
familiaris]
Length = 316
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 124/221 (56%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + + C+S +
Sbjct: 4 RSRGINAGLILLLSQIFHVGINNIPPVTLATLALNVWFFLNPLKP---LYESCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F +++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYIIVTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + T++ +CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 FLEFALAEFTDEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFANILGFPVPNRFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+ + P SF GHL+GILVGL YT P L +++KC
Sbjct: 181 VAIHFISPGTSFAGHLAGILVGLMYTHGP----LKKIMEKC 217
>gi|410969603|ref|XP_003991284.1| PREDICTED: rhomboid-related protein 4 [Felis catus]
Length = 316
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 121/210 (57%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + + +L+ + L C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGVNNIPPVTLATLAVNIWFFLSPLKP---LLSSCLSVETCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS F H DD HLY+NM S++ KG LE+ G F +++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPFHHADDWHLYFNMASMLWKGINLERRLGSKWFAYVIVTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + + N+ +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 LLEFALAEFMNEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFANVLGFPVPNRFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ + P ASF GHL+GILVGL YT P+
Sbjct: 181 VAIHFISPGASFAGHLAGILVGLMYTLGPL 210
>gi|403266722|ref|XP_003925512.1| PREDICTED: rhomboid domain-containing protein 1 [Saimiri
boliviensis boliviensis]
Length = 315
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 122/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPLKSLYSS---CLSVERCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ D++RL+LS H DD HLY+NM S++ KG LEK G F ++ +V T + Y+
Sbjct: 61 QQNDWQRLLLSPVHHADDWHLYFNMASMLWKGIHLEKRLGSRWFACVITTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNVLGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 VAIHLCSPGTSFAGHLAGILVGLMYTQGP----LKKIMEAC 217
>gi|332251234|ref|XP_003274752.1| PREDICTED: uncharacterized protein LOC100579431 isoform 1 [Nomascus
leucogenys]
gi|332251236|ref|XP_003274753.1| PREDICTED: uncharacterized protein LOC100579431 isoform 2 [Nomascus
leucogenys]
Length = 316
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 120/210 (57%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVISTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+LL P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHLLSPGTSFAGHLAGILVGLMYTQGPL 210
>gi|397502459|ref|XP_003821875.1| PREDICTED: rhomboid domain-containing protein 1 [Pan paniscus]
Length = 315
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 119/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+L P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPV 210
>gi|291392324|ref|XP_002712556.1| PREDICTED: rhomboid domain containing 1 [Oryctolagus cuniculus]
Length = 316
Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 7/226 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILL I +G + IPP TL + L ++LN + +++ CIS +
Sbjct: 4 RSRGINTGLILLFSQIFRVGINNIPPVTLATLALNIWLFLNPLKPLYNS---CISVERCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NMVS++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPVHHADDWHLYFNMVSMLWKGVNLERRLGSKWFAYIIATFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL ++ N+ +CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFVFAEFMNEPDYRRNCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMIN 228
+ I+ P +SF GHL+GILVGL YT P L +++ C M +
Sbjct: 181 VAIHFFTPGSSFSGHLAGILVGLMYTQGP----LKKMMETCAGMFS 222
>gi|426338762|ref|XP_004033341.1| PREDICTED: rhomboid-related protein 4 [Gorilla gorilla gorilla]
Length = 315
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGP----LKKIMEAC 217
>gi|33300639|ref|NP_115652.2| rhomboid-related protein 4 [Homo sapiens]
gi|263190666|ref|NP_001161080.1| rhomboid-related protein 4 [Homo sapiens]
gi|74723955|sp|Q8TEB9.1|RHBL4_HUMAN RecName: Full=Rhomboid-related protein 4; Short=RRP4; AltName:
Full=Rhomboid domain-containing protein 1; AltName:
Full=Rhomboid-like protein 4
gi|18676811|dbj|BAB85031.1| unnamed protein product [Homo sapiens]
gi|51947534|gb|AAU14246.1| HSD-50 [Homo sapiens]
gi|71680537|gb|AAI01265.1| Rhomboid domain containing 1 [Homo sapiens]
gi|71682034|gb|AAI01264.1| Rhomboid domain containing 1 [Homo sapiens]
gi|71682037|gb|AAI01266.1| Rhomboid domain containing 1 [Homo sapiens]
gi|83405869|gb|AAI11057.1| Rhomboid domain containing 1 [Homo sapiens]
gi|119591247|gb|EAW70841.1| rhomboid domain containing 1, isoform CRA_a [Homo sapiens]
gi|119591248|gb|EAW70842.1| rhomboid domain containing 1, isoform CRA_a [Homo sapiens]
Length = 315
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGP----LKKIMEAC 217
>gi|281342330|gb|EFB17914.1| hypothetical protein PANDA_008422 [Ailuropoda melanoleuca]
Length = 286
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G IPP TL + L ++LN + + C+S +
Sbjct: 4 RSRGIHAGLILLLSQIFHVGISNIPPVTLATLALNIWLFLNPLKP---LFESCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F +++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYIIVTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + + +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 FLEFALAESMGEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFANVLGFPVPNRFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+ + P SF GHL+GILVGL YT P L +++KC
Sbjct: 181 VAIHFISPGTSFAGHLAGILVGLMYTHGP----LKKIMEKC 217
>gi|71682851|gb|AAI01263.1| Rhomboid domain containing 1 [Homo sapiens]
Length = 315
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGP----LKKIMEAC 217
>gi|301768701|ref|XP_002919769.1| PREDICTED: rhomboid domain-containing protein 1-like [Ailuropoda
melanoleuca]
Length = 316
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G IPP TL + L ++LN + + C+S +
Sbjct: 4 RSRGIHAGLILLLSQIFHVGISNIPPVTLATLALNIWLFLNPLKP---LFESCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F +++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYIIVTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + + +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 FLEFALAESMGEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFANVLGFPVPNRFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+ + P SF GHL+GILVGL YT P L +++KC
Sbjct: 181 VAIHFISPGTSFAGHLAGILVGLMYTHGP----LKKIMEKC 217
>gi|410036272|ref|XP_003950028.1| PREDICTED: rhomboid-related protein 4 [Pan troglodytes]
gi|410211256|gb|JAA02847.1| rhomboid domain containing 1 [Pan troglodytes]
gi|410266108|gb|JAA21020.1| rhomboid domain containing 1 [Pan troglodytes]
gi|410301220|gb|JAA29210.1| rhomboid domain containing 1 [Pan troglodytes]
gi|410339123|gb|JAA38508.1| rhomboid domain containing 1 [Pan troglodytes]
Length = 315
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGP----LKKIMEAC 217
>gi|198416524|ref|XP_002119628.1| PREDICTED: similar to rhomboid domain containing 1 [Ciona
intestinalis]
Length = 333
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 6/208 (2%)
Query: 11 LILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRK----PWS-TLDVCISADAVIQQR 65
L+LLL+ + G D IPP TLG + L V+L K P+ L VC V ++R
Sbjct: 18 LMLLLIQLCQAGFDNIPPVTLGTIALNVGVFLGFVHKFLNLPFPHPLQVCAGVAQVWKRR 77
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
DY R++ + F HG D HLYYNM+S + KGR LE+ G +FL ++ +V + + L
Sbjct: 78 DYWRIVEATFHHGGDWHLYYNMISFLWKGRSLERKIGSKRFLYMIAVFSVLVNYVMLWLN 137
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRL-QPDAYQQILNINVKAIYAPWFELII 184
Y + D S ++ CAIGFS V+FA+K + T+L +P + I V + + WFELI+
Sbjct: 138 YGAANVFRDGSYINQCAIGFSGVVFAVKVVTTQLMEPGTVLLLGFIPVNSRLSCWFELIL 197
Query: 185 IYLLVPNASFKGHLSGILVGLTYTDTPI 212
I +LVPNASF GHL+GILVGL Y P+
Sbjct: 198 IQVLVPNASFTGHLAGILVGLAYVKGPL 225
>gi|348544033|ref|XP_003459486.1| PREDICTED: rhomboid domain-containing protein 1-like [Oreochromis
niloticus]
Length = 323
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADA 60
R R +LGL+LL + LG + IPP TL ++ L VYL +F P + L C+S
Sbjct: 3 NRQRGSQLGLLLLASQVFQLGLNNIPPITLAVLALN--VYLYLF--PAAPLFQACVSVQQ 58
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+D++RL+LS H DD HLY+NMVS + KGR+LE+ G FL L+ ++ T L
Sbjct: 59 AYWLKDWRRLLLSPLHHADDWHLYFNMVSFLWKGRRLEQRLGGPWFLYLLSVFSLLTGLV 118
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
Y++L ++ + D S CA+GFS VLFA+K + P + ++ + V + YA W
Sbjct: 119 YLVLEALLTELMQDQSYSMACAVGFSGVLFALKVLNNHYYPGSVTYVMGLPVSSRYASWV 178
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMI 227
EL++I++ P SF GHLSGILVGL YT P L ++ KC +
Sbjct: 179 ELVLIHITSPGTSFVGHLSGILVGLLYTTGP----LKKIMKKCAGFV 221
>gi|62955205|ref|NP_001017614.1| rhomboid domain-containing protein 1 [Danio rerio]
gi|62204835|gb|AAH92835.1| Zgc:110266 [Danio rerio]
Length = 335
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 119/211 (56%), Gaps = 3/211 (1%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAV 61
R R LGL+LL + LG D IPP TL + L ++L F+ L+ C+S
Sbjct: 3 NRQRGTNLGLLLLASQVFQLGIDNIPPVTLATLGLNVYLFLFPFKP---LLETCLSVREA 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
RD+ RL+LS F H DDMHLY+NM L+ KG +LEK G F L+ ++ T Y
Sbjct: 60 YWYRDWSRLLLSPFHHVDDMHLYFNMALLLWKGIRLEKKLGGPWFAYLLSVFSLLTGFVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + ++T D+S CA+GFS VLF +K + P I+ + + YA W E
Sbjct: 120 LLLETGLTHMTEDSSYSLQCAVGFSGVLFGLKVVNNHYHPGGATNIMGLPIANRYACWVE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
L++I+++ P SF GHLSGILVGL YT P+
Sbjct: 180 LVLIHIMNPGTSFVGHLSGILVGLLYTTGPL 210
>gi|395528133|ref|XP_003766186.1| PREDICTED: rhomboid domain-containing protein 1 [Sarcophilus
harrisii]
Length = 344
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 11/223 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKP--WSTLDVCISADA 60
R R + GL+LL I+ +G +PP TL + L ++LN KP W +C+S ++
Sbjct: 4 RARGFHQGLLLLFFQIMQVGITNVPPVTLACIALNIWLFLNPL-KPIYW----LCLSVES 58
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+++D++RL+LS F H DD HLY+NMVS++ KG LE+ G F ++ ++ T +
Sbjct: 59 CYEKKDWQRLLLSPFHHADDWHLYFNMVSMLWKGLTLERRLGSFWFAYIIAVFSLLTGVV 118
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
Y+ L Y V + + +CAIGFS VLFA+K + P + I+ + + YA W
Sbjct: 119 YLALEYTVAELLDQREFKVYCAIGFSGVLFALKVLSNNYNPGGHTNIMGMYIPNKYACWV 178
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
EL++I+LL P SF GHL+GI+VGL YT P L +++ C
Sbjct: 179 ELVMIHLLSPRTSFAGHLAGIIVGLMYTLGP----LKMIMEAC 217
>gi|291235069|ref|XP_002737468.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 414
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 129/225 (57%), Gaps = 2/225 (0%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R LG++LL + ++ +G D IPP TL + +++YL I + P S VC+SA V
Sbjct: 12 RRRAEGLGILLLAIQVMRVGLDNIPPVTLASLVANTVIYLRILQVP-SIQTVCVSAVKVW 70
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
Q ++ RL+L+++ H DMHLY+NM S + KG LE+ G F ++ +V TS +
Sbjct: 71 HQHEWSRLLLASWFHTSDMHLYFNMASFLWKGMSLERKLGSKYFAYMIAVFSVLTSSLLV 130
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFE 181
L + + D S L CA+GFSAV+F++K + T Q I+ I V + A W E
Sbjct: 131 CLDILASEVFGDASYLYSCAVGFSAVIFSIKMVTTYSMAPGTQWIMGLIPVHSRIACWVE 190
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEM 226
L++I +LVPN SF GHL+GILVGL Y P+ +D + E+
Sbjct: 191 LVLIQVLVPNVSFTGHLAGILVGLAYVKGPLKRNMDLFLQPDNEI 235
>gi|402889541|ref|XP_003908071.1| PREDICTED: rhomboid domain-containing protein 1, partial [Papio
anubis]
Length = 285
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 127/239 (53%), Gaps = 11/239 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I ++G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFNVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCC 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H +D HLY+NM S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLERRLGSRWFAFVITTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQ 241
+ I+L P SF GHL+GILVGL YT P+ K E G ++G +Q
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPL--------KKMMEACAGGFSSNVGYPGQQ 231
>gi|197097614|ref|NP_001125444.1| rhomboid-related protein 4 [Pongo abelii]
gi|75042072|sp|Q5RBS4.1|RHBL4_PONAB RecName: Full=Rhomboid-related protein 4; Short=RRP4; AltName:
Full=Rhomboid domain-containing protein 1; AltName:
Full=Rhomboid-like protein 4
gi|55728068|emb|CAH90786.1| hypothetical protein [Pongo abelii]
Length = 318
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 121/221 (54%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQRD++RL+LS H DD HLY+N S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLERRLGSRWFAYVITTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GH +GILVGL YT P L +++ C
Sbjct: 181 VAIHLFSPGTSFAGHQAGILVGLMYTQGP----LKKIMEAC 217
>gi|62858293|ref|NP_001016449.1| rhomboid domain containing 1 [Xenopus (Silurana) tropicalis]
gi|89272850|emb|CAJ82135.1| novel protein containing rhomboid domain [Xenopus (Silurana)
tropicalis]
Length = 308
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 119/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LL + G IPP TL + L ++LN F KP L+VCIS
Sbjct: 4 RQRGINAGLLLLFAQLFQFGVHNIPPVTLAALGLNIFLFLNPF-KP--LLEVCISVRDGY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
RD++R +LS F H DD HLY+NMVSL+ KG +LE+ G G F +++I + + Y+
Sbjct: 61 YGRDWQRFLLSPFHHADDWHLYFNMVSLLWKGAKLERKLGSGLFATIIIVFSQLIGVVYV 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L Y + T D S CA+GFS VLFA+K + P + I + YA W EL
Sbjct: 121 ILEYGLAEFTGDPSYKMQCAVGFSGVLFALKVLNNYYHPGGSSNVFGILIPNKYACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+LL P SF GHLSGILVGL YT P+
Sbjct: 181 VAIHLLSPGTSFVGHLSGILVGLLYTQGPL 210
>gi|426221661|ref|XP_004005027.1| PREDICTED: rhomboid-related protein 4 [Ovis aries]
Length = 322
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GL+LLL I +G + +PP TL + L +LN + L C+S +
Sbjct: 4 RSRGVNIGLLLLLSQIFQVGINNVPPVTLATLALNIWFFLNPLKP---LLSSCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F +++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPIHHADDWHLYFNMASMLWKGIHLERRLGSRWFAYIIVTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + N+ +CAIGFS VLFA+K + P + +L V +A W EL
Sbjct: 121 FLEFALAEFLNEPDFKRNCAIGFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+ + P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 LAIHFISPGTSFAGHLAGILVGLMYTHGP----LKKIMESC 217
>gi|16041108|dbj|BAB69721.1| hypothetical protein [Macaca fascicularis]
Length = 261
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 127/239 (53%), Gaps = 11/239 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LLL I ++G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLVLLLSQIFNVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCC 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H +D HLY+NM S++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLERRLGSRWFALVITTFSILTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQ 241
+ I+L P SF GHL+GILVGL YT P+ K E G ++G +Q
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPL--------KKMMEACAGGFSSNVGYPGQQ 231
>gi|156351056|ref|XP_001622342.1| predicted protein [Nematostella vectensis]
gi|156208856|gb|EDO30242.1| predicted protein [Nematostella vectensis]
Length = 321
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 127/234 (54%), Gaps = 7/234 (2%)
Query: 1 MTRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADA 60
M R R LG+ LLL + + G + IPP TL + + +YL + D C+SA+
Sbjct: 1 MQRRGRGGLGIFLLLAQLYNFGFNRIPPVTLSFIAGNAAIYLRLLPNLPRLRDACVSANH 60
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V D+ RL L+ F H DD HLYYNM S + KG+ LE G G FL L+ +V TS+
Sbjct: 61 VWYYGDWLRLALAPFFHLDDWHLYYNMASFLWKGKSLETKLGSGMFLYLLAVFSVLTSVV 120
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPW 179
+ L + +T D+S L CA GFS V+FA+K + T P ++ + + YA W
Sbjct: 121 LVGLDIFLANVTGDSSYLYSCAAGFSGVIFALKVLTTYELPSGVSMVMGMFPIPVRYACW 180
Query: 180 FELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGW------GLDYVVDKCQEMI 227
ELI+I L+VPNASF GHL+GI+VGL Y P+ G+D V C I
Sbjct: 181 AELILIQLMVPNASFTGHLAGIIVGLLYVKGPLKSILNILPGIDVTVISCMTCI 234
>gi|109101279|ref|XP_001110165.1| PREDICTED: rhomboid domain-containing protein 1-like isoform 4
[Macaca mulatta]
gi|297265038|ref|XP_001110119.2| PREDICTED: rhomboid domain-containing protein 1-like isoform 3
[Macaca mulatta]
Length = 316
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 119/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I ++G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFNVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCC 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H +D HLY+NM S++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLERRLGSRWFALVITTFSILTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+L P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPL 210
>gi|355565238|gb|EHH21727.1| hypothetical protein EGK_04857 [Macaca mulatta]
Length = 316
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 119/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I ++G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFNVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCC 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H +D HLY+NM S++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLERRLGSRWFALVITTFSILTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+L P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPL 210
>gi|391331176|ref|XP_003740026.1| PREDICTED: rhomboid domain-containing protein 1-like [Metaseiulus
occidentalis]
Length = 471
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 127/212 (59%), Gaps = 4/212 (1%)
Query: 1 MTRPRRYELGLILLLVHILH-LGADTIPPATLGLVFLQSMVYLNIFRKPWSTLD-VCISA 58
M R R G++LL+ H+L +G + IPP TLG + LQ ++L + + PW +++ CISA
Sbjct: 1 MMRRNRDNFGVLLLVQHLLFTVGLENIPPVTLGTIGLQVCLFLGLIKVPWRSIEECCISA 60
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+I++R++ R+ SA EH D HLYYNM S + KG LE + G F L++ T+ +
Sbjct: 61 YTLIERREFMRIFSSALEHSDSYHLYYNMASFVWKGIILESVMGAPFFAYLLVVFTILVA 120
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI--LNINVKAIY 176
L + + Y + + + +S CAIGFS V+FA+K ++ ++ PD + I N+ V
Sbjct: 121 LVSVSINYALAILFSSFDFMSSCAIGFSGVIFALKVVVNKVYPDVHPVIGGYNLRVPGGM 180
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
W EL +I L VP ASF GHL+GILVG Y+
Sbjct: 181 YVWLELALISLFVPRASFVGHLAGILVGTAYS 212
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 55 CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT 114
C+++ V Y + + + HL Y++++L+ G +E+ G ++ LV+ LT
Sbjct: 306 CLNSYLVFDAHRYASIFTAPLHTLNGYHLLYSVLTLLRVGSNIERRVGLLRYAILVLILT 365
Query: 115 VFTSLYYILLAYIVFYITNDTS-----ELSH-CAIGFSAVLFAMKTILTRLQPDAYQQIL 168
+SL Y+ L V E+ + C +G +A+L AMK L P L
Sbjct: 366 AGSSLAYVCLVKYVLVRAESVGGVYPYEMKYKCFMGPTAILIAMKLAHGELLPYLNSTFL 425
Query: 169 NINVKAI---YAPWFELIIIYLLVPNASFKGHLSGILVGLTYTD 209
+ AI + E+ ++++L P A G+ +G+L GL +
Sbjct: 426 IFELPAIPLVFVVLGEIFLLHMLFPQAWVVGNAAGMLAGLVFVT 469
>gi|355750890|gb|EHH55217.1| hypothetical protein EGM_04375 [Macaca fascicularis]
Length = 316
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 119/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I ++G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFNVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCC 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H +D HLY+NM S++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLERRLGSRWFALVITTFSILTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+L P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPL 210
>gi|380817122|gb|AFE80435.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|380817124|gb|AFE80436.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|383422139|gb|AFH34283.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|383422141|gb|AFH34284.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|384949790|gb|AFI38500.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|384949792|gb|AFI38501.1| rhomboid domain-containing protein 1 [Macaca mulatta]
Length = 316
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 119/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I ++G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFNVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCC 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H +D HLY+NM S++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLERRLGSRWFALVITTFSILTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+L P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGPL 210
>gi|50752018|ref|XP_422616.1| PREDICTED: rhomboid domain-containing protein 1 [Gallus gallus]
Length = 317
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 118/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LLL I +G IP TL ++ L +LN R + CIS
Sbjct: 4 RQGRVNAGLLLLLYQISQVGLQNIPSVTLAVLILNVFFFLNPMRP---LHEACISVKEAF 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+++++RL+LS H DD HLYYNMVS++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 YRQNWQRLLLSPVHHVDDWHLYYNMVSMLWKGITLERKLGSMWFAYIIAVFSVLTGIVYV 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL +++ I ND S CA+GFS VLFA+K + P +L + + + YA W EL
Sbjct: 121 LLEFMLVKILNDPSYEMSCAVGFSGVLFALKVLNNHYNPGRVSSVLGLQISSKYACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ + P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHFIAPRTSFAGHLAGILVGLMYTMGPL 210
>gi|444730882|gb|ELW71255.1| Rhomboid domain-containing protein 1 [Tupaia chinensis]
Length = 278
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILL I H+G + IPP TL + L +LN + + C+S +
Sbjct: 4 RSRGINTGLILLFSQICHVGINNIPPVTLATLALNIWFFLNPLKP---LIYSCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G +F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGVHLERRLGSRRFAYVISTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDYRKSCAVGFSGVLFALKVLNNHYFPGGFVNVLGFPVPNKFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHFFSPGTSFAGHLAGILVGLMYTQGPL 210
>gi|417414315|gb|JAA53453.1| Putative rhomboid domain-containing protein 1, partial [Desmodus
rotundus]
Length = 287
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 11/240 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I +G + IPP TL + + +L+ + L C+S +
Sbjct: 4 RSRGVNAGLILLLSQIFQVGVNNIPPVTLATLAINIWFFLSPLKP---LLSSCLSVETCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
Q++D++RL+LS F H DD HLY+NMVS++ KG QLE+ G F ++ ++ T + Y+
Sbjct: 61 QEKDWQRLLLSPFHHADDWHLYFNMVSMLWKGIQLERRLGSRWFAYVITTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L + + +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 VLESALAEFMEEPGFKMNCAVGFSGVLFALKVLSNHYCPGGFVNVLGFPVPNRFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQN 242
+ I+L+ P SF GHL+GILVGL YT P+ K EM G + G ++Q+
Sbjct: 181 VAIHLISPGTSFAGHLAGILVGLMYTHGPL--------KKLMEMCAGIFSFNTGYPRQQH 232
>gi|344257225|gb|EGW13329.1| Rhomboid domain-containing protein 1 [Cricetulus griseus]
Length = 298
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 121/210 (57%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GL++LL ++H+G + IPP TL + L +LN + + + CIS +
Sbjct: 4 RSRGINVGLLMLLSQVVHVGINNIPPVTLATLALNIWFFLNPLKPLYYS---CISVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NMVS++ KG +LE+ G F L+ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIKLERRLGTRWFAYLLTTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L + + + N +CA+GFS VLFA+K + P + +L V A W EL
Sbjct: 121 VLQFTLAELMNQPDFRRNCAVGFSGVLFALKVLSNHYFPGGFVNVLGFLVPNRLACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHFCTPGTSFAGHLAGILVGLMYTQGPL 210
>gi|449670102|ref|XP_002160201.2| PREDICTED: rhomboid-related protein 4-like [Hydra magnipapillata]
Length = 369
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 1/198 (0%)
Query: 17 HILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFE 76
+L +G D IPP TL + L V+L +F + C S V + ++ RLI S+F
Sbjct: 19 QVLQIGVDQIPPITLATLVLNVAVFLQLFPFMSTVEKACTSNFNVFHKGEWPRLIYSSFY 78
Query: 77 HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTS 136
H DDMHLY+NMVS I KGR LE+ ++L L+ +V T + +LL I+ +I +
Sbjct: 79 HLDDMHLYFNMVSFIWKGRNLERRMKRSQYLVLLALFSVLTQVVMLLLNSILSFIFTNDV 138
Query: 137 ELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
L CA GFSAV+FA+K + T D Y+ ++ I V + YA W EL++I ++VPN SF G
Sbjct: 139 YLHSCAAGFSAVIFALKVLTTHNSID-YETVMGIVVPSRYACWAELVLIQIMVPNVSFTG 197
Query: 197 HLSGILVGLTYTDTPIGW 214
HL+GILVGL Y P+ W
Sbjct: 198 HLAGILVGLMYIFGPLKW 215
>gi|354501643|ref|XP_003512899.1| PREDICTED: rhomboid domain-containing protein 1-like [Cricetulus
griseus]
Length = 307
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 121/210 (57%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GL++LL ++H+G + IPP TL + L +LN + + + CIS +
Sbjct: 4 RSRGINVGLLMLLSQVVHVGINNIPPVTLATLALNIWFFLNPLKPLYYS---CISVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NMVS++ KG +LE+ G F L+ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIKLERRLGTRWFAYLLTTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L + + + N +CA+GFS VLFA+K + P + +L V A W EL
Sbjct: 121 VLQFTLAELMNQPDFRRNCAVGFSGVLFALKVLSNHYFPGGFVNVLGFLVPNRLACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHFCTPGTSFAGHLAGILVGLMYTQGPL 210
>gi|440910625|gb|ELR60400.1| Rhomboid domain-containing protein 1 [Bos grunniens mutus]
Length = 322
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GL+LLL I +G + +PP TL + L +LN + L C+S +
Sbjct: 4 RSRGVNIGLLLLLSQIFQVGINNVPPVTLATLALNIWFFLNPLKP---LLSSCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
Q+D++RL+LS H DD HLY+NMVS++ KG LE+ G F +++ ++ T + Y+
Sbjct: 61 YQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLERRLGSRWFAYIIVTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + N+ +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 FLEFALAEFLNEPDFKRNCAVGFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+ + P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 LAIHFISPGTSFAGHLAGILVGLMYTHGP----LKKIMESC 217
>gi|432103473|gb|ELK30578.1| Rhomboid domain-containing protein 1 [Myotis davidii]
Length = 313
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
RPR GLILLL I H+G + IPP TL + + +L+ + +S+ C+S +
Sbjct: 4 RPRGLNAGLILLLSQIFHVGINNIPPVTLATLAVNIWFFLSPLKPVYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
Q++D++RL+LS F H DD HLY+NMVS++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QEKDWQRLLLSPFHHADDWHLYFNMVSMLWKGIHLERRLGSRWFAYVITTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + CA+GFS VLF +K + P + +L V ++ W EL
Sbjct: 121 FLEFAFAECMGEPDFKRSCAVGFSGVLFGLKVLNNHYFPGGFVNVLGFPVPHKFSCWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+L+ P SF GHL+GILVGL Y P+
Sbjct: 181 VAIHLITPGTSFAGHLAGILVGLMYIHGPL 210
>gi|146231840|gb|ABQ12995.1| rhomboid domain containing 1 [Bos taurus]
Length = 322
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GL+LLL I +G + +PP TL + L +LN + L C+S +
Sbjct: 4 RSRGVNIGLLLLLSQIFQVGINNVPPVTLATLALNIWFFLNPLKP---LLSSCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
Q+D++RL+LS H DD HLY+NMVS++ KG LE+ G F +++ ++ T + Y+
Sbjct: 61 YQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLERRLGSRWFAYIIVTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + N+ +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 FLEFALAEFLNEPDFKRNCAVGFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ + P SF GHL+GILVGL YT P+
Sbjct: 181 LAIHFISPGTSFAGHLAGILVGLMYTHGPL 210
>gi|348577789|ref|XP_003474666.1| PREDICTED: rhomboid domain-containing protein 1-like [Cavia
porcellus]
Length = 309
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 122/225 (54%), Gaps = 7/225 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LL I H+G IPP TL + + ++LN + S+ C+S +
Sbjct: 4 RSRGINTGLLLLFSQIFHVGVSNIPPVTLATLAVNIWLFLNPLKPLQSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NMVS++ KG LE+ G F ++ +FT + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGINLERRLGSRWFAYVLATFVLFTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL ++ +CA+GFS VLFA+K + P + IL V A W EL
Sbjct: 121 LLQVACAEFMDEPDFRRNCAVGFSGVLFALKVLNNHYCPGGFVNILGCPVPNKLACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMI 227
+ I+ L P SF GHL+GILVGL YT P L +++ C + +
Sbjct: 181 LAIHFLSPGTSFAGHLAGILVGLMYTRGP----LKKIMETCADTV 221
>gi|118151086|ref|NP_001071463.1| rhomboid domain-containing protein 1 [Bos taurus]
gi|115304921|gb|AAI23778.1| Rhomboid domain containing 1 [Bos taurus]
Length = 267
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GL+LLL I +G + +PP TL + L +LN + L C+S +
Sbjct: 4 RSRGVNIGLLLLLSQIFQVGINNVPPVTLATLALNIWFFLNPLKP---LLSSCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
Q+D++RL+LS H DD HLY+NMVS++ KG LE+ G F +++ ++ T + Y+
Sbjct: 61 YQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLERRLGSRWFAYIIVTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + N+ +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 FLEFALAEFLNEPDFKRNCAVGFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ + P SF GHL+GILVGL YT P+
Sbjct: 181 LAIHFISPGTSFAGHLAGILVGLMYTHGPL 210
>gi|296490188|tpg|DAA32301.1| TPA: rhomboid domain-containing protein 1 [Bos taurus]
Length = 268
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GL+LLL I +G + +PP TL + L +LN + L C+S +
Sbjct: 4 RSRGVNIGLLLLLSQIFQVGINNVPPVTLATLALNIWFFLNPLKP---LLSSCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
Q+D++RL+LS H DD HLY+NMVS++ KG LE+ G F +++ ++ T + Y+
Sbjct: 61 YQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLERRLGSRWFAYIIVTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L + + N+ +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 FLEFALAEFLNEPDFKRNCAVGFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ + P SF GHL+GILVGL YT P+
Sbjct: 181 LAIHFISPGTSFAGHLAGILVGLMYTHGPL 210
>gi|449278548|gb|EMC86359.1| Rhomboid domain-containing protein 1 [Columba livia]
Length = 220
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 121/210 (57%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LLL I +G IP TLG++ L ++LN R +VCIS +
Sbjct: 4 RQGRVSAGLLLLLYQISQVGLQNIPSVTLGVLALNIFLFLNPVRP---LHEVCISVNEGF 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+R+++RL+LS H DD HLYYNMVS++ KG LEK F ++ +V + Y+
Sbjct: 61 YKRNWQRLLLSPVHHADDWHLYYNMVSMLWKGIMLEKKLKSVWFAYIIAVFSVLIGVVYM 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L +++ I +D S +CA+GFS VLFA+K + P +L + + + YA W EL
Sbjct: 121 MLEFMLVEILDDPSYEMNCAVGFSGVLFALKVLNNHYNPGRVSSVLGLPIASKYACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ + P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHFISPGTSFAGHLAGILVGLMYTMGPL 210
>gi|242001818|ref|XP_002435552.1| hypothetical protein IscW_ISCW006085 [Ixodes scapularis]
gi|215498888|gb|EEC08382.1| hypothetical protein IscW_ISCW006085 [Ixodes scapularis]
Length = 453
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 124/210 (59%), Gaps = 5/210 (2%)
Query: 3 RPRRYELGLILLLVHILH-LGADTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADA 60
R +R +G++LLL H+++ +G D IPP TL +V Q+ +L + PW S + CIS D
Sbjct: 4 RQQRDTMGVLLLLNHVVYQIGLDVIPPVTLAIVVAQACTFLGLVDLPWRSPAEACISVDK 63
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V+ + + R++ +AFEHGD HLYYNMVS I KG ++E G FL +V T T +
Sbjct: 64 VVFRGQWWRILFAAFEHGDSFHLYYNMVSFIWKGIRMETELGSAYFLYIVCLFTGLTGVT 123
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA--P 178
+ L+Y+ N + CA+GFSAV+FA+K + P I+ ++V
Sbjct: 124 LVGLSYLCGMFVNPSFN-YQCAVGFSAVIFALKVLNNHYWPGISPTIMGMSVSMPSGLIV 182
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLTYT 208
W EL++I L+ PNASF GHL+GILVGL Y
Sbjct: 183 WAELVLIQLVTPNASFLGHLAGILVGLAYV 212
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
+ C+++ V++Q +++L++ A + MHL Y +VSL+ G LE+ G +F +
Sbjct: 283 NPCVNSYLVLKQERWEQLLVPALHTYNSMHLLYTVVSLLGLGFYLERRLGTVQFALTTLA 342
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSH------CAIGFSAVLFAMKTILTRLQPDAYQQ 166
TV T+L Y L+ + V + + H C +G + L A+K I + P A
Sbjct: 343 ATVATNLAYCLMTHFVLPYAKEIDGIPHFEMEYKCFLGMTGALMALKVIYSYYYPYAGYL 402
Query: 167 ILNINVKAIYAPWF-----ELIIIYLLVPNASFKGHLSGILVGLTYT 208
+ I V P F E+ +++ L+P+ G++ G VG+ Y
Sbjct: 403 LFFIEVP---VPKFIGLVLEIALLHFLLPHVWIVGNVVGFAVGIVYV 446
>gi|387018080|gb|AFJ51158.1| Rhomboid domain-containing protein 1-like [Crotalus adamanteus]
Length = 310
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 119/211 (56%), Gaps = 5/211 (2%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLD-VCISADAV 61
R + G++ LL + +G IPP TLG + V + F +P LD CIS +
Sbjct: 4 RHKGLNTGVLFLLSQLYQVGFHNIPPVTLGTL----AVNIFFFLQPLKPLDKACISVNYC 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++D+ RL LSAF H DD HLY+NMVSL+ KG +LE G F ++ ++ Y
Sbjct: 60 LYKKDWHRLYLSAFHHADDWHLYFNMVSLLWKGIKLESRLGTMWFGYIIALFSLLVGAVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
I L ++ + + S HCA+GFS VLFA+K + P I+ +NV Y+ W E
Sbjct: 120 IFLEAVLAELLGNPSYEHHCAVGFSGVLFALKVLNNYYHPGGSTNIMGLNVSNKYSCWLE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
L+ I+LL P +SF GHL+GILVGL YT P+
Sbjct: 180 LLAIHLLNPQSSFAGHLAGILVGLMYTMGPL 210
>gi|324513372|gb|ADY45497.1| Rhomboid domain-containing protein 1 [Ascaris suum]
Length = 331
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 133/223 (59%), Gaps = 9/223 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRK--PWSTLDVCISADA 60
R R+ G+ LL H+L + IPP TLG + Q V+L PW T ++C+
Sbjct: 5 RRRQQNFGVYLLAYHLLQ--NEYIPPVTLGAILFQMAVFLGFVPPIGPWKTREMCLLPSR 62
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+I R++ R++ S HGDDMHLYYNM+SL+ KGR+LE+ G +FL +++ V +S
Sbjct: 63 IIGHREWIRMLASVVMHGDDMHLYYNMISLLWKGRRLERRLGSWRFLLILLVFAVASSCG 122
Query: 121 YI---LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIY 176
+ +LA VF++ + + + CA+GFS VLFA+K + T P +L + + + Y
Sbjct: 123 IVALSVLATDVFHL-HYLALMHQCAVGFSGVLFALKVLHTTYFPYEDSMLLGWMPIPSRY 181
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYV 219
A W EL++I L P ASF GHLSGILVGL YT P+ + +D++
Sbjct: 182 ACWAELLLIQFLAPEASFIGHLSGILVGLLYTKGPLKYFVDFL 224
>gi|327267037|ref|XP_003218309.1| PREDICTED: rhomboid domain-containing protein 1-like [Anolis
carolinensis]
Length = 317
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
Query: 5 RRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLD-VCISADAVIQ 63
R GL+LL I +G + IPP T F V + +F +P L+ VCIS
Sbjct: 9 RGLNTGLLLLFGQIYQVGLNNIPPIT----FATLAVNIYLFLQPLKPLEEVCISVSEGFY 64
Query: 64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
+RD+ RL LSAF H DD HLY+NMVSL+ KG +LE+ G F ++ +V + Y++
Sbjct: 65 RRDWHRLYLSAFHHADDWHLYFNMVSLLWKGIKLERRLGSMWFGYIITLFSVLVGIVYMI 124
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
L + + + + S + CA+GFS VLFA+K + P ++ I V YA W ELI
Sbjct: 125 LEFTLAELLENPSFIQSCAVGFSGVLFALKVLNNYYHPGGSSSLMGIYVSNKYACWVELI 184
Query: 184 IIYLLVPNASFKGHLSGILVGLTYTDTPI 212
I+LL P +SF GHL+GILVGL YT P+
Sbjct: 185 AIHLLSPGSSFAGHLAGILVGLMYTMGPL 213
>gi|326925844|ref|XP_003209118.1| PREDICTED: rhomboid domain-containing protein 1-like [Meleagris
gallopavo]
Length = 317
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 117/210 (55%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LLL I +G IP TL ++ L +LN R + CIS
Sbjct: 4 RQGRVNAGLLLLLYQISQVGLQNIPSVTLAVLVLNVFFFLNPVRP---LHEACISVREAF 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+++++RL+LS H DD HLYYNM+S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 YRQNWQRLLLSPVHHVDDWHLYYNMISMLWKGIMLERRVGSVWFAYIIAVFSVLTGIVYV 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL ++ I ND S CA+GFS VLFA+K + P +L + + + YA W EL
Sbjct: 121 LLELMLVKILNDPSYEMSCAVGFSGVLFALKVLNNHYNPGRVSSVLGLQISSKYACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ + P SF GHL+GILVGL YT P+
Sbjct: 181 VAIHFISPGTSFAGHLAGILVGLMYTMGPL 210
>gi|355716387|gb|AES05595.1| rhomboid domain containing 1 [Mustela putorius furo]
Length = 294
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 120/228 (52%), Gaps = 14/228 (6%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G IPP TL + L +LN + + C+S +
Sbjct: 4 RSRGINAGLILLLSQIFHVGISNIPPVTLATLVLNIWFFLNPLKP---LFESCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F +++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGIHLERRLGSRWFAYVIVTFSLLTGVLYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN-------VKAI 175
L + + ++ +CA+GFS VLFA+K + P + IL V
Sbjct: 121 FLEFALAEFLDEPDFRRNCAVGFSGVLFALKVLNNHYCPGGFANILGFPVPNRLACVPNR 180
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
A W EL+ I+ L P SF GHL+GILVGL YT P L ++ KC
Sbjct: 181 LACWAELLAIHFLSPGTSFAGHLAGILVGLMYTHGP----LKKIMKKC 224
>gi|427785133|gb|JAA58018.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 450
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 5/210 (2%)
Query: 3 RPRRYELGLILLLVHIL-HLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLD-VCISADA 60
R +R +G++LLL H+L +G + IPP TL +V Q+ +L +F PW + CIS +A
Sbjct: 4 RHQRDAMGVMLLLNHVLFQVGLEAIPPVTLFIVLAQACTFLQLFEVPWRDISGACISVNA 63
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
VI ++ + R+ A EHGD +HLYYNMVS I KG LE + G +F +++ T +
Sbjct: 64 VIFKKQWLRIFYGAIEHGDSLHLYYNMVSFIWKGMLLEPVLGGAQFAYIIVLFTALCGIV 123
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINV--KAIYAP 178
+ L Y++ D++ CA+GFS V+FA+K + P ++ L I++ A
Sbjct: 124 LLGLNYLLGTFV-DSAFYYQCAVGFSGVIFALKVLNNYYFPGRSRRFLGIDIDLPAGQVV 182
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLTYT 208
W EL++I L+ PNAS GHL+GILVGL Y
Sbjct: 183 WLELVLIQLVTPNASLVGHLAGILVGLAYV 212
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 55 CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT 114
C+++ VI +K L + A +HL Y ++SL+ G LE G +FL ++ LT
Sbjct: 286 CLASSLVIDHHQWKLLFIPALHTSGSLHLAYTVLSLLGLGYYLEHRMGIFRFLGTLLTLT 345
Query: 115 VFTSLYYILLAYIVFYITNDTSELS---------HCAIGFSAVLFAMKTILTRLQPDAYQ 165
V T++ + L+ Y YI + E++ C +G +A L AMK I T P
Sbjct: 346 VLTNIAFCLVTY---YILPNHMEVAGVRAFQIRYKCFLGLTATLIAMKGIYTAYYPTGPY 402
Query: 166 --QILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
L + V + FE +++ +P+ G+ G +
Sbjct: 403 LFLFLPVPVPKLLGVIFEFALLHFALPHVWIVGNAIGFFAAFMFV 447
>gi|395823332|ref|XP_003784941.1| PREDICTED: rhomboid domain-containing protein 1 [Otolemur
garnettii]
Length = 316
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 124/221 (56%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LLL ++H+G + IPP TL + L S ++LN KP + C+S +
Sbjct: 4 RSRGIHSGLLLLLSQVIHVGINNIPPVTLATLALNSWLFLNPL-KPLH--NSCLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ RD++RL+LS H DD HLY+NMVS++ KG LE+ G F ++ ++ T L Y+
Sbjct: 61 EHRDWQRLLLSPLHHADDWHLYFNMVSMLWKGINLERRLGSRWFACVIATFSLLTGLVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + + + CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 LLQFALAEFMREPELRRSCAVGFSGVLFALKVLNNHYFPGGFVNVLGFPVPNRFACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGP----LKKIMEAC 217
>gi|334347379|ref|XP_001373833.2| PREDICTED: rhomboid domain-containing protein 1-like [Monodelphis
domestica]
Length = 336
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 120/210 (57%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +G++LL + +G IPP TL + L ++L+ KP+ VC+S ++
Sbjct: 4 RSREIPVGVLLLASQMFQIGITNIPPVTLACLALNVWLFLSPL-KPFHW--VCLSVESCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+++D++RL+LS F H DD HLY+NM SL+ KG LE+ G F ++ ++ + Y+
Sbjct: 61 EKKDWQRLLLSPFHHVDDWHLYFNMASLLWKGLTLERRLGSFWFAYVISVFSILIGVIYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L Y + + + HC IGFS VLFA+K + P + I+ + + YA W EL
Sbjct: 121 ALEYSLAELLDQPEYKMHCTIGFSGVLFALKVLNNNYNPGGHTNIMGLYIPNKYACWMEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
++I+LL P SF GHL+GI+VGL Y P+
Sbjct: 181 LMIHLLTPKTSFAGHLAGIIVGLLYVLGPL 210
>gi|449509605|ref|XP_002194576.2| PREDICTED: rhomboid-related protein 4 [Taeniopygia guttata]
Length = 314
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 122/210 (58%), Gaps = 3/210 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LLL I +G IP TLG++ L ++LN R P S + C+S + +
Sbjct: 4 RQRGISAGLLLLLYQISQVGLQNIPSVTLGVLVLNIFLFLNPLR-PLS--EACLSVNEAV 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+++++RL+L+ F H DD HLYYNM+S++ KG LE+ F ++ +V + Y+
Sbjct: 61 YRKNWQRLLLAPFHHADDWHLYYNMISMLWKGIMLERKLKSIWFAYIIAVFSVLIGIVYM 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L ++ I +D S +C +GFS VLFA+K + P +L + + + YA W EL
Sbjct: 121 VLELLLVIILDDPSYEMNCGVGFSGVLFALKVLNNHYNPGRVSSVLGLPISSKYACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
+ I+ + P SF GHLSGILVGL YT P+
Sbjct: 181 LAIHFISPGTSFAGHLSGILVGLMYTMGPL 210
>gi|351715240|gb|EHB18159.1| Rhomboid domain-containing protein 1 [Heterocephalus glaber]
Length = 315
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 7/226 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LL I H+G + IPP TL + + ++L + + + C+S +
Sbjct: 4 RSRGINTGLLLLFSQIFHVGINNIPPVTLATLAVNIWLFLTPLKPLYHS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVLTTFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL ++ +CA+GFS VLFA+K + P + +L V A W EL
Sbjct: 121 LLQVACAEFMDEPDFRRNCAVGFSGVLFALKVLSNHYCPGGFVNVLGFPVPNRLACWAEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMIN 228
+ I+ P SF GHL+GILVGL YT P L +++ C + +
Sbjct: 181 LAIHFFSPGTSFAGHLAGILVGLMYTHGP----LKKIMETCAGLFS 222
>gi|325180697|emb|CCA15102.1| serine protease family S54 putative [Albugo laibachii Nc14]
Length = 295
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 136/249 (54%), Gaps = 16/249 (6%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFR--KPWSTLDVCISADA 60
R +R L L +L+ I+ + D PP T+ L+ L S ++ IF S + +
Sbjct: 12 RDKRNLLVLYMLIQKIMQM--DRKPPLTISLIVLMSNLHFRIFDIGATLSPESYMLCPNL 69
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++++ +++RLI SAF HGDD+HLY+NMVS + KG QLE G F L+I+L + +
Sbjct: 70 IVRRHEWERLIGSAFFHGDDIHLYHNMVSFLWKGYQLESKMGSYHFACLLIYLLLVSHGL 129
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+L +Y++F + ++ + C++GFSAVLF +K +L P+ I V YA W
Sbjct: 130 IVLASYLIFKLQHNPHAWTQCSLGFSAVLFGLKVVLNSKSPNT-SNIYGFQVPTKYAAWL 188
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTY-TDTPIG---------WGLDYVVDKCQEMINGE 230
EL++I++LVP+ASF GHL GI+ G ++ + IG W + ++ ING
Sbjct: 189 ELVLIHVLVPDASFLGHLCGIVAGYSWISHAAIGKKGETLYHKW-ISFIRSARHTPINGR 247
Query: 231 EQEDMGEEQ 239
+ + Q
Sbjct: 248 PSGKLSQNQ 256
>gi|115620361|ref|XP_780455.2| PREDICTED: rhomboid domain-containing protein 1-like
[Strongylocentrotus purpuratus]
Length = 349
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 138/248 (55%), Gaps = 16/248 (6%)
Query: 1 MTRPRRYEL------GLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIF--------R 46
M RPRR + GL+LLL + +G D IPP TL + ++YL + R
Sbjct: 1 MFRPRRRGMQRQQGLGLLLLLHQLYRVGFDRIPPVTLATIVANVLIYLRVLNPYIKTVIR 60
Query: 47 KPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKF 106
P S ++C+S+ V + D+ RL L+A+ H DD HLY+NMVS + KG LE+ +G F
Sbjct: 61 SP-SIQNICVSSAHVWYKGDWPRLFLAAWFHLDDFHLYFNMVSFVWKGISLERKFGSPYF 119
Query: 107 LSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ 166
L++ T+ + L + + D+S + CA GFS VLFA+K + T P Q+
Sbjct: 120 AYLIVVFCFLTNGLLVALNVGLAELLEDSSHIVSCAAGFSGVLFALKVLTTTYTPVQSQR 179
Query: 167 ILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQE 225
I+ + +V + +A W EL++I L+VP ASF GHL+GILVGL Y P+ +D + +
Sbjct: 180 IMGLFSVPSRWACWVELVLIQLIVPRASFTGHLAGILVGLAYVKGPLKLLMDALWNLFTT 239
Query: 226 MINGEEQE 233
+++G +
Sbjct: 240 VLSGNPAQ 247
>gi|213512430|ref|NP_001133781.1| Rhomboid domain-containing protein 1 [Salmo salar]
gi|209155312|gb|ACI33888.1| Rhomboid domain-containing protein 1 [Salmo salar]
gi|209734730|gb|ACI68234.1| Rhomboid domain-containing protein 1 [Salmo salar]
Length = 313
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 109/196 (55%), Gaps = 3/196 (1%)
Query: 17 HILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFE 76
+ +G + IPP TL ++ L ++L + P L CIS + D++RL+LS
Sbjct: 19 QVFQVGVENIPPVTLAVLGLNVYLFL-VPNLP--LLQACISVQQAYWRGDWRRLVLSPLH 75
Query: 77 HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTS 136
H DD HLY+NM S + KG +LE G + L+ ++ T + Y+LL ++ IT D S
Sbjct: 76 HLDDWHLYFNMASFLWKGVKLEPRLGSSFYAWLLAVFSLLTGVIYLLLEMVLSEITQDPS 135
Query: 137 ELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
CA+GFS VLFA+K + P ++ + V YA W EL++I+L P SF G
Sbjct: 136 YSMQCAVGFSGVLFALKVLSNHYHPGGVSYVMGVPVANRYASWVELVLIHLTSPGTSFVG 195
Query: 197 HLSGILVGLTYTDTPI 212
HL+GILVGL YT P+
Sbjct: 196 HLAGILVGLLYTAGPL 211
>gi|440796367|gb|ELR17476.1| peptidase, S54 (rhomboid) subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 293
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 119/207 (57%), Gaps = 2/207 (0%)
Query: 1 MTRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADA 60
M R GLILL + + +G D IPP TL + V L+ S DVCI A
Sbjct: 1 MRRRGGNNAGLILLALQVAQIGFDKIPPVTL--IVGAINVLLHYVDTRLSIYDVCIGAGM 58
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V + D +RL+L++F H DDMHLYYNMVSL+ KGR LE G +F +LV+ + +++
Sbjct: 59 VWHRLDLRRLLLASFFHLDDMHLYYNMVSLLWKGRDLEPRMGSKRFATLVVLFALVSNML 118
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
++ + ++ + + CA+GFSAVLFA+K + T Y + + V Y WF
Sbjct: 119 MVVGSVLLDRFADMPGPYNSCAVGFSAVLFALKVVTTHYSTSPYSHFMGMLVPTQYLYWF 178
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTY 207
EL++I+LLVP +SF GHL GIL G+ Y
Sbjct: 179 ELVLIHLLVPGSSFFGHLCGILTGILY 205
>gi|432891062|ref|XP_004075529.1| PREDICTED: rhomboid-related protein 4-like [Oryzias latipes]
Length = 291
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 112/198 (56%), Gaps = 5/198 (2%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
R RR LGL+LL + +G D IPP TL ++ L VYL +F P + L CIS
Sbjct: 4 RDRRSHLGLLLLASQVFQVGLDRIPPVTLAVMALN--VYLYLF--PAAPLMKTCISVHQA 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +D++RL+LS H DD+HLY+NMVS + KG +LE+ G FL L+ ++ T Y
Sbjct: 60 YRYKDWRRLLLSPVHHADDLHLYFNMVSFLWKGVRLERRLGGAWFLYLLSVFSLLTGCVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
++L ++ +T D S + CA+GFS VLFA+K + P ++ I V Y W E
Sbjct: 120 LVLEGLLTELTQDQSYSAACAVGFSGVLFALKVLNNHYHPGGVTYVMGIPVSNRYVSWVE 179
Query: 182 LIIIYLLVPNASFKGHLS 199
L++I++ P SF +S
Sbjct: 180 LVLIHITSPGTSFAQFVS 197
>gi|348537952|ref|XP_003456456.1| PREDICTED: rhomboid domain-containing protein 1-like [Oreochromis
niloticus]
Length = 298
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 124/237 (52%), Gaps = 18/237 (7%)
Query: 5 RRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQ 64
R ++ GL+LLLV + G IP TL ++ VYL +F P L C+S D V +
Sbjct: 3 RGFQAGLLLLLVQLFQEGPGNIPAITLAVLGFN--VYLYVF-PPAPPLKACMSLDQVYRN 59
Query: 65 RDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL--VIFLTVFTSLYYI 122
++++RL+LS H DD HLY+NM S + KG +LE+ G FL L V FL +
Sbjct: 60 KEWRRLLLSPLHHIDDWHLYFNMASFLWKGIRLERRLGGSWFLYLLSVFFLLTGLVYLLL 119
Query: 123 LLAYIVFYITNDTSE---------LSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVK 173
I D S+ CA+GFS VLFA+K + P ++NI V
Sbjct: 120 QALMIKLMEGTDRSDPLLEYVQAFSRECAVGFSGVLFALKVVNNHFNPGGVTYVMNIRVS 179
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGE 230
+A W EL++IYL+ P S GHL+G+LVGL YT P L +++ C +M++ +
Sbjct: 180 NRFASWVELVLIYLIAPGTSLVGHLAGVLVGLLYTAGP----LKTIMEACADMLSSD 232
>gi|260796227|ref|XP_002593106.1| hypothetical protein BRAFLDRAFT_120182 [Branchiostoma floridae]
gi|229278330|gb|EEN49117.1| hypothetical protein BRAFLDRAFT_120182 [Branchiostoma floridae]
Length = 297
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 114/212 (53%), Gaps = 13/212 (6%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRK-PWSTLDVCISADAV 61
R RR + L+LL + G IPP TL + ++L +FR + L
Sbjct: 8 RHRRPGIALVLLAFQMAQAGFQNIPPVTLATLAANVAMFLRLFRGFRYPKLG-------- 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
D+KRLI +AF H D+ HLYYNM S + KG LE+ G +FL ++ TV T
Sbjct: 60 ---EDWKRLIYAAFFHADEWHLYYNMASFMWKGITLERRMGSVRFLYVLAVFTVCTHSLL 116
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWF 180
+ L Y + + + +S L+ CA+GFS V+FA+K + T P ++ V A W
Sbjct: 117 LGLNYSMDHFFHQSSYLADCAVGFSGVIFALKVLTTHYLPPGMTYVMGWFPVPRRIACWV 176
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
EL++I +L+P ASF GHLSGILVGL YT P+
Sbjct: 177 ELVVIQILIPRASFMGHLSGILVGLLYTSGPL 208
>gi|299471888|emb|CBN77058.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 418
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 117/210 (55%), Gaps = 25/210 (11%)
Query: 27 PPATLGLVFLQSMVYL--NIFRK--------PWSTL--------DVCISADAVIQ----- 63
PP TL L+ S ++L +IF+ WS L +VC+ +++
Sbjct: 54 PPLTLALMAGMSALHLKPDIFKDLFGRKGVFEWSWLTGGFDHIRNVCLLPASILDTYERT 113
Query: 64 -QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ + +RL++S F HGDDMHLYYNM S +LKG LE G F L+ F + + +
Sbjct: 114 GEVEIRRLLMSPFVHGDDMHLYYNMASFLLKGVSLELTMGTQAFAGLLSFSLLASQTLMM 173
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L A+++ + + S + CA+GFS VLFA+K +L+R P ++ +V YA W EL
Sbjct: 174 LSAWVLLVVFDVPSPMHACAVGFSGVLFALKYVLSRRSP-GVTSVMGFSVHTRYATWLEL 232
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
++I ++VPNASF GHL GIL G+ Y + PI
Sbjct: 233 VLISVMVPNASFLGHLCGILAGVLYVEVPI 262
>gi|340370436|ref|XP_003383752.1| PREDICTED: rhomboid domain-containing protein 1-like [Amphimedon
queenslandica]
Length = 335
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 127/246 (51%), Gaps = 32/246 (13%)
Query: 11 LILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRL 70
L+LL V++L I P G+ +S+ + F P S + CISA V ++RL
Sbjct: 41 LVLLGVNVLAF----IRPQVGGV---RSLRFARSFHWP-SVSESCISAKNVWYYGQWERL 92
Query: 71 ILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS-LYYILLAYIVF 129
L+ F H D HLYYNM+S + K R LEK YG F ++ T+ TS +Y IL ++
Sbjct: 93 FLAPFIHADSWHLYYNMISFMWKARTLEKRYGSLYFAYMIAMFTLLTSGVYLILNVHLAE 152
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
Y D S + CA+GFS V+FA+K + T LQP+ + I + + A W EL++I +L
Sbjct: 153 YF--DWSYYNRCAVGFSGVIFAVKVLTTHLQPNHMSYVFGIGIPSKLAVWAELLLISVLN 210
Query: 190 PNASFKGHLSGILVGLTYTDTP------IGWGL---------------DYVVDKCQEMIN 228
PNASF GHL+GILVGL + P + WG+ +Y + N
Sbjct: 211 PNASFIGHLAGILVGLAFVSGPLKMIMDVPWGIVTSGISGANIGRQSYNYTARPSGQRRN 270
Query: 229 GEEQED 234
+Q+D
Sbjct: 271 ESDQQD 276
>gi|410910522|ref|XP_003968739.1| PREDICTED: rhomboid-related protein 4-like [Takifugu rubripes]
Length = 321
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 18 ILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFE 76
+ +G D IPP TL ++ L VYL +F P + L C+S +++ RL+LS
Sbjct: 19 LFQVGLDKIPPVTLAVLGLN--VYLFLF--PAAPLMQACVSVQQAYWFKEWHRLLLSPLH 74
Query: 77 HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTS 136
H DD HLY+NMVS + KG +LE+ G FL L+ ++ T + Y+ L ++ +T D S
Sbjct: 75 HADDFHLYFNMVSFLWKGVRLERRLGGAWFLYLLSVFSLLTGVVYLALETLLAELTQDQS 134
Query: 137 ELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
CA+GFS VLFA+K I P ++ + + YA W EL++I++ P S G
Sbjct: 135 YNMQCAVGFSGVLFALKVINNHYYPGGTTYVMGLPISNRYASWVELVLIHITAPGTSLIG 194
Query: 197 HLSGILVGLTYTDTPIGWGLDYVVDKCQEMI 227
HLSGI+VGL YT P L ++ +C +
Sbjct: 195 HLSGIVVGLLYTVGP----LKTIMKRCAGFV 221
>gi|393907597|gb|EJD74708.1| hypothetical protein LOAG_18018 [Loa loa]
Length = 314
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 129/232 (55%), Gaps = 11/232 (4%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFR--KPWSTLDVCISAD 59
R R++ G+ LL + + + IPP TL ++ Q ++L T +C+
Sbjct: 6 NRRRQHNYGIYLLAYQLFN--SPNIPPITLAVIIFQMAIFLGYLPLLGQHRTEAMCLLPS 63
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
++ + ++ R++ S H DDMHLY+NM+SL+ KGR+LE G +FL L+ + TS
Sbjct: 64 RILYRSEWLRMLASTVMHVDDMHLYFNMISLLWKGRRLEPWLGSRRFLLLLATFALATSS 123
Query: 120 YYILLAYIV--FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIY 176
+ L+Y+ + N ++ CA+GFS VLFA+K + T P + + + + + +
Sbjct: 124 TMVGLSYLADEVFTFNGGGYMNQCAVGFSGVLFALKVLHTTHFPYSDHNLFGWLPIPSQF 183
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMIN 228
A W ELI++ +L PNASF GHLSGI+VGL YT P L VVD + +I+
Sbjct: 184 ACWAELILLQMLTPNASFIGHLSGIIVGLAYTMGP----LKTVVDILESIIS 231
>gi|168008302|ref|XP_001756846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692084|gb|EDQ78443.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 3 RPRRYELGLILLLVHILHLGADTI-----PPATLGLVFLQSMVYLNIFR--KPWSTL-DV 54
RPR G++ +L +H + + PP T L+ +Q++++L + TL +V
Sbjct: 5 RPRIQGNGMLYMLA--MHAASTFMQLPRKPPVTAALIAVQTLIHLRPGKLDDALPTLSEV 62
Query: 55 CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT 114
C++ VI+ D KRL LSAF H D+ HL YNM+SL+ KG QLE G KF L+ L
Sbjct: 63 CLNPYFVIKDWDLKRLFLSAFYHVDETHLVYNMISLMWKGVQLEGSMGSQKFAGLLAVLL 122
Query: 115 VFTSLYYILLAYIVFYITND-TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVK 173
+S + + ++ ++ + TS S CA+GFS VLFA+K +L P ++ + I V
Sbjct: 123 GLSSSLVVASSSLLAFLADSPTSFYSECAVGFSGVLFALKVVLNYNSP-SHTNVYGILVP 181
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTP 211
+ YA W EL++I + VP SF GHL GIL G+ Y +TP
Sbjct: 182 SRYAAWVELLVIQMFVPGTSFLGHLCGILAGVIYMNTP 219
>gi|47221041|emb|CAG12735.1| unnamed protein product [Tetraodon nigroviridis]
Length = 343
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 114/237 (48%), Gaps = 33/237 (13%)
Query: 19 LHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEH 77
+G +PP TL ++ L VYL +F P + L C+S +++ RL+LS H
Sbjct: 20 FQVGLGNVPPVTLAVLGLN--VYLYLF--PAAPLMQACVSVQRAYWFKEWHRLLLSPLHH 75
Query: 78 GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE 137
DD HLY+NM S + KG +LE+ G FL L+ +V T + Y++L ++ +T D S
Sbjct: 76 ADDFHLYFNMASFLWKGIRLERRLGGAWFLYLLSVFSVLTGVVYLVLETLLAELTQDQSY 135
Query: 138 LSHCAIGFS------------------------AVLFAMKTILTRLQPDAYQQILNINVK 173
CA+GFS VLFA+K + P ++ + V
Sbjct: 136 SMQCAVGFSGILRNLNCNVYNGYLYIFLFFLFRGVLFALKVLSNHYHPGGVTYVMGLPVS 195
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGE 230
YA W EL++I++ P S GHLSGI+VGL YT P L ++ C I +
Sbjct: 196 NRYASWVELVLIHITAPGTSLIGHLSGIVVGLLYTVGP----LKTIMKTCAGFITSD 248
>gi|168027437|ref|XP_001766236.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682450|gb|EDQ68868.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 330
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLV-I 111
+VC++ V++ RD KRL LSA H D+ HL YNM+SL KG QLE G + ++V +
Sbjct: 49 EVCLNPYFVVKNRDLKRLWLSALYHVDETHLVYNMISLTWKGIQLENSMGSQNYAAMVAV 108
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN 171
L + +SL +++ F + TS S C++GFS VLFA+K +L P + + I
Sbjct: 109 LLGLSSSLVVASSSFLAFIADSPTSFYSECSVGFSGVLFALKVVLNYNSP-THTNVYGIL 167
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTP 211
V + YA W EL++I + VP SF GHL GIL GL Y +TP
Sbjct: 168 VPSRYAAWVELLVIQMFVPGTSFLGHLCGILAGLIYVNTP 207
>gi|431917916|gb|ELK17145.1| Rhomboid domain-containing protein 1 [Pteropus alecto]
Length = 189
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 106/188 (56%), Gaps = 3/188 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LLL I ++G + IPP TL + L + +L+ + + + C+S +
Sbjct: 4 RTRGLNTGLLLLLSQICYVGVNNIPPVTLAALALNTWFFLSPLKPLYGS---CLSVEKCF 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS F H DD HLY+NMVSL+ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPFHHADDWHLYFNMVSLLWKGINLERRLGSKWFAYVIATFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
L ++ S +CA+GFS VLFA+K + P + ++ V +A W EL
Sbjct: 121 FLELAFAEFMDEPSFRMNCAVGFSGVLFALKVLNNHYFPGGFVSVMGFPVPNKFACWAEL 180
Query: 183 IIIYLLVP 190
+ I+L+VP
Sbjct: 181 VAIHLMVP 188
>gi|311273152|ref|XP_003133738.1| PREDICTED: rhomboid domain-containing protein 1-like [Sus scrofa]
Length = 299
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 3/189 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R +GL+LLL I H+G + IPP T+ + L +LN + +S+ C+S +
Sbjct: 4 RSRGINVGLLLLLSQIYHVGINNIPPVTVATLALNIWFFLNPLKPLFSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ ++ T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHVDDWHLYFNMASMLWKGINLERRLGSRWFAYIIATFSLLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + + + ++ +CA+GFS VLFA+K + P + +L V +A W EL
Sbjct: 121 LLEFALAELLDEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFVNVLGFPVPNKFACWAEL 180
Query: 183 IIIYLLVPN 191
+ I+ + P
Sbjct: 181 LAIHFISPG 189
>gi|224178866|ref|XP_002193393.1| PREDICTED: rhomboid-related protein 4-like [Taeniopygia guttata]
Length = 189
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 3/188 (1%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GL+LLL I +G IP TLG++ L ++LN R P S + C+S + +
Sbjct: 4 RQRGISAGLLLLLYQISQVGLQNIPSVTLGVLVLNIFLFLNPLR-PLS--EACLSVNEAV 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+++++RL+L+ F H DD HLYYNM+S++ KG LE+ F ++ +V + Y+
Sbjct: 61 YRKNWQRLLLAPFHHADDWHLYYNMISMLWKGIMLERKLKSIWFAYIIAVFSVLIGIVYM 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+L ++ I +D S +C +GFS VLFA+K + P +L + + + YA W EL
Sbjct: 121 VLELLLVIILDDPSYEMNCGVGFSGVLFALKVLNNHYNPGRVSSVLGLPISSKYACWVEL 180
Query: 183 IIIYLLVP 190
+ I+ + P
Sbjct: 181 LAIHFISP 188
>gi|348676100|gb|EGZ15918.1| hypothetical protein PHYSODRAFT_507191 [Phytophthora sojae]
Length = 326
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 1/207 (0%)
Query: 6 RYELGLILLLVHILHLGA-DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQ 64
R GL L+L+ + + + PP TLGL+ L ++ + P + D V+
Sbjct: 19 RNGQGLTLMLMLVRQVQQLERKPPVTLGLMALMYGIHFQKNQTPQLFAPYSLCPDRVLSN 78
Query: 65 RDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
D++R++ S H DD HLY+NM+S + KG LE G +FL V +L V + +++
Sbjct: 79 WDWERIVASGLIHVDDWHLYHNMISFLWKGYNLEYKLGSVRFLLTVGYLLVLCHVLVVVV 138
Query: 125 AYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELII 184
A ++ + L C++GFS VLFA+K +L P + + V Y W EL++
Sbjct: 139 ALVLATGFQMPAPLHQCSVGFSGVLFALKVLLNHNSPAFFSSVYGFQVPTKYTAWLELVV 198
Query: 185 IYLLVPNASFKGHLSGILVGLTYTDTP 211
I+ LVP +SF GH+ GIL G + D+P
Sbjct: 199 IHFLVPRSSFMGHMCGILAGYIFVDSP 225
>gi|388508086|gb|AFK42109.1| unknown [Medicago truncatula]
Length = 335
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 4/188 (2%)
Query: 23 ADTIPPATLGLVFLQSMVYL--NIFRKPWSTLD-VCISADAVIQQRDYKRLILSAFEHGD 79
++T PP T L+ +++YL + R +D V ++ +++ +D KR LSAF H
Sbjct: 28 SNTKPPVTAALIAANTVIYLRPSFLRHLIPPIDEVLFNSHLILKNKDLKRFFLSAFYHLG 87
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS 139
+ HL +NM+SL+ KG LE G +F S++ L + ++L+ +F +
Sbjct: 88 EPHLVFNMISLLWKGIHLESSIGSLQFASMIASLLALSQSINLVLSKSLFVFFDYDRYYY 147
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
A GFS VLFAMK +L Q D Y + + + + YA W ELI+I + VPN SF GHLS
Sbjct: 148 EYAAGFSGVLFAMKIVLNS-QSDDYTNVYGVLIPSRYAAWAELILIQMFVPNVSFLGHLS 206
Query: 200 GILVGLTY 207
GIL GL Y
Sbjct: 207 GILAGLVY 214
>gi|356565565|ref|XP_003551010.1| PREDICTED: uncharacterized protein At3g17611-like [Glycine max]
Length = 332
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 23 ADTIPPATLGLVFLQSMVYLNIFRKPWSTLD--------VCISADAVIQQRDYKRLILSA 74
+D PP T L+ +++YL +P S LD V + +++ +D KR +LS
Sbjct: 39 SDHKPPVTAALIAANTLIYL----RP-SFLDPLIPPIEQVWFNPHLILKNKDLKRFLLSP 93
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA-YIVFYITN 133
F H + HL YNM+SL+ KG QLE G F S+V L V + ++L+ ++ +
Sbjct: 94 FYHIGEPHLVYNMLSLLWKGFQLETSMGSVNFSSMVASLLVLSQGVTLMLSKSLLLFFDY 153
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
+ S S ++GFS VLFAMK +L Q + Y + + V + YA W EL++ LLVP S
Sbjct: 154 ERSYYSEYSVGFSGVLFAMKVVLNS-QSENYTSVYGVIVPSRYAAWAELVLAQLLVPGVS 212
Query: 194 FKGHLSGILVGLTY 207
F GHL GIL GL Y
Sbjct: 213 FLGHLGGILAGLLY 226
>gi|358248954|ref|NP_001240224.1| uncharacterized protein LOC100816495 [Glycine max]
gi|255640981|gb|ACU20770.1| unknown [Glycine max]
Length = 322
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 15/194 (7%)
Query: 23 ADTIPPATLGLVFLQSMVYLNIFRKPWSTLD--------VCISADAVIQQRDYKRLILSA 74
+D PP T L+ +++YL +P S LD V + +++ +D KR +LS
Sbjct: 28 SDHKPPFTAALIAANTLIYL----RP-SFLDPLIPPIEQVWFNPHLILKNKDLKRFLLSP 82
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA-YIVFYITN 133
F H + HL YNM+SL+ KG QLE G F S+V L V + ++L+ ++ +
Sbjct: 83 FYHIGEPHLVYNMLSLLWKGFQLETSMGSVDFASIVASLLVLSQGVTLMLSKSLLLFFDY 142
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
+ S S ++GFS VLFAMK +L Q + Y + I V + YA W EL++ LLVP S
Sbjct: 143 ERSYYSEYSVGFSGVLFAMKVVLNS-QSENYTSVYGIIVPSRYAAWAELVLAQLLVPGVS 201
Query: 194 FKGHLSGILVGLTY 207
F GHL GIL GL Y
Sbjct: 202 FLGHLGGILAGLLY 215
>gi|255556632|ref|XP_002519350.1| conserved hypothetical protein [Ricinus communis]
gi|223541665|gb|EEF43214.1| conserved hypothetical protein [Ricinus communis]
Length = 325
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 27 PPATLGLVFLQSMVYLN-IFRKPW--STLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PP T GL+ +++YL F +P S DV + +++ D KR LSAF H + HL
Sbjct: 31 PPVTAGLLAANTLIYLRPAFLRPILPSIHDVWFNPYLILKDGDLKRFFLSAFYHVGESHL 90
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLV-IFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
YNM+SL+ KG QLE G +F S+V LT+ + +L ++ + S A
Sbjct: 91 VYNMMSLLWKGIQLETSMGSVEFASMVAALLTMSQGITLLLAKSLLLFFDYGRPFYSEYA 150
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
+GFS VLFAMK +L Q D Y + + V A +A W ELI+I + VP SF GHL GIL
Sbjct: 151 VGFSGVLFAMKVVLNS-QSDNYTHVHGLVVPARHAAWAELILIQMFVPGVSFLGHLGGIL 209
Query: 203 VGLTY 207
G+ Y
Sbjct: 210 AGILY 214
>gi|255645151|gb|ACU23074.1| unknown [Glycine max]
Length = 234
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 103/189 (54%), Gaps = 5/189 (2%)
Query: 23 ADTIPPATLGLVFLQSMVYLN-IFRKPW--STLDVCISADAVIQQRDYKRLILSAFEHGD 79
+D PP T L+ +++YL F P V + +++ +D KR +LS F H
Sbjct: 28 SDHKPPFTAALITANTLIYLRPSFLDPLIPPIEQVWFNPHLILKNKDLKRFLLSPFYHIG 87
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA-YIVFYITNDTSEL 138
+ HL YNM+SL+ KG QLE G F S+V L V + ++L+ ++ + + S
Sbjct: 88 EPHLVYNMLSLLWKGFQLETSMGSVDFASIVASLLVLSQGVTLMLSKSLLLFFDYERSYY 147
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHL 198
S ++GFS VLFAMK +L Q + Y + I V + YA W EL++ LLVP SF GHL
Sbjct: 148 SEYSVGFSGVLFAMKVVLNS-QSENYTSVYGIIVPSRYAAWAELVLAQLLVPGVSFLGHL 206
Query: 199 SGILVGLTY 207
GIL GL Y
Sbjct: 207 GGILAGLLY 215
>gi|9294149|dbj|BAB02051.1| unnamed protein product [Arabidopsis thaliana]
Length = 506
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 27 PPATLGLVFLQSMVYLN-IFRKP--WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PP T L+ ++VYL F P +V + + + +D KRL LSAF H ++ HL
Sbjct: 205 PPVTASLLAANTLVYLRPAFIDPVIPHISEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHL 264
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT-SLYYILLAYIVFYITNDTSELSHCA 142
YNM+SL+ KG +LE G +F S+V L + + +L ++ D + + A
Sbjct: 265 VYNMMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYA 324
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
+GFS VLFAMK +L Q + Y + I V YA W ELI++ + VPNASF GHL GIL
Sbjct: 325 VGFSGVLFAMKVVLNS-QAEDYSSVYGILVPTKYAAWAELILVQMFVPNASFLGHLGGIL 383
Query: 203 VGLTY 207
G+ Y
Sbjct: 384 AGIIY 388
>gi|30684602|ref|NP_850606.1| rhomboid-like protein 14 [Arabidopsis thaliana]
gi|75247670|sp|Q8RXW0.1|Y3761_ARATH RecName: Full=Uncharacterized protein At3g17611
gi|19310562|gb|AAL85014.1| unknown protein [Arabidopsis thaliana]
gi|21436261|gb|AAM51269.1| unknown protein [Arabidopsis thaliana]
gi|332642458|gb|AEE75979.1| rhomboid-like protein 14 [Arabidopsis thaliana]
Length = 334
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 27 PPATLGLVFLQSMVYLN-IFRKP--WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PP T L+ ++VYL F P +V + + + +D KRL LSAF H ++ HL
Sbjct: 33 PPVTASLLAANTLVYLRPAFIDPVIPHISEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHL 92
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT-SLYYILLAYIVFYITNDTSELSHCA 142
YNM+SL+ KG +LE G +F S+V L + + +L ++ D + + A
Sbjct: 93 VYNMMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYA 152
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
+GFS VLFAMK +L Q + Y + I V YA W ELI++ + VPNASF GHL GIL
Sbjct: 153 VGFSGVLFAMKVVLNS-QAEDYSSVYGILVPTKYAAWAELILVQMFVPNASFLGHLGGIL 211
Query: 203 VGLTY 207
G+ Y
Sbjct: 212 AGIIY 216
>gi|225432236|ref|XP_002270713.1| PREDICTED: uncharacterized protein At3g17611 [Vitis vinifera]
gi|147864086|emb|CAN81122.1| hypothetical protein VITISV_038478 [Vitis vinifera]
gi|297736839|emb|CBI26040.3| unnamed protein product [Vitis vinifera]
Length = 328
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 12/215 (5%)
Query: 2 TRPRRYELGLILLLVHILHLGADTI-----PPATLGLVFLQSMVYL--NIFRKPWSTLD- 53
T RR G++ LL LH + PP T GL+ +++YL + T+D
Sbjct: 3 TGRRRVSRGMLPLLA--LHTANEYYRVGWKPPVTAGLLAANTLIYLRPSFIDSMLPTIDK 60
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLV-IF 112
V + +++ +D KR +LS F H D+ HL YNM+SL+ KG QLE G +F S+V
Sbjct: 61 VWFNPHLILKHKDLKRFLLSPFYHMDEAHLVYNMMSLLWKGIQLETSMGSAEFASMVATL 120
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINV 172
L + + +L ++ + + + S A+GFS VLFAMK +L D Y + + V
Sbjct: 121 LGMSQGITLLLAKSLLLFFDYERAYYSQFAVGFSGVLFAMKVVLNSQSAD-YTYVHGLIV 179
Query: 173 KAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
+A W ELI+I + VP SF GHL GIL G+ Y
Sbjct: 180 PTRHAAWVELILIQMFVPGVSFLGHLGGILAGILY 214
>gi|297830378|ref|XP_002883071.1| hypothetical protein ARALYDRAFT_898103 [Arabidopsis lyrata subsp.
lyrata]
gi|297328911|gb|EFH59330.1| hypothetical protein ARALYDRAFT_898103 [Arabidopsis lyrata subsp.
lyrata]
Length = 335
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 27 PPATLGLVFLQSMVYLN-IFRKP--WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PP T L+ +++YL F P +V + + + +D KRL LSAF H ++ HL
Sbjct: 34 PPVTASLLAANTLLYLRPAFIDPVIPHISEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHL 93
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT-SLYYILLAYIVFYITNDTSELSHCA 142
YNM+SL+ KG +LE G +F S+V L + + +L ++ D + + A
Sbjct: 94 VYNMMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLVLFDYDRAYYNEYA 153
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
+GFS VLFA+K +L Q + Y + I V YA W ELI++ + VPNASF GHL GIL
Sbjct: 154 VGFSGVLFALKVVLNS-QAEDYSSVYGILVPTKYAAWAELILVQMFVPNASFLGHLGGIL 212
Query: 203 VGLTY 207
G+ Y
Sbjct: 213 AGIIY 217
>gi|326489153|dbj|BAK01560.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 342
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 97/186 (52%), Gaps = 8/186 (4%)
Query: 27 PPATLGLVFLQSMVYL-----NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDM 81
PP T L+ ++VYL + F P S V + +IQ D R LSAF H +
Sbjct: 45 PPVTAALIAANALVYLRPGALDAFLPPLSR--VAFNPHLIIQYGDLTRFFLSAFYHLSET 102
Query: 82 HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC 141
H +YNM SL+ KG QLE G +F S+V L + + +LL+ + + N+
Sbjct: 103 HFFYNMTSLLWKGIQLETSMGSVEFASMVTALLGLSQGFTLLLSKGLLLLGNEVPYYDQY 162
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGI 201
A+GFS VLF MK +L D Y + + + A YA W EL++I +P SF GHLSGI
Sbjct: 163 AVGFSGVLFGMKIVLNAWS-DDYVFLHGMVIPAKYAAWAELLLIQAFIPGTSFIGHLSGI 221
Query: 202 LVGLTY 207
L GL Y
Sbjct: 222 LAGLAY 227
>gi|449480819|ref|XP_004156004.1| PREDICTED: uncharacterized protein At3g17611-like [Cucumis sativus]
Length = 314
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 28 PATLGLVFLQSMVYL--NIFRKPWSTLD-VCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
P TLGL+ ++++L N ++D V +A + + +D KR +LS F H D HL
Sbjct: 20 PITLGLLASNTLIHLRPNFLHHIIPSIDEVWFNAHLIFKHKDLKRFLLSPFYHVGDPHLV 79
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT-SLYYILLAYIVFYITNDTSELSHCAI 143
YNM+SL+ KG QLE G +F S+V L + + + +L+ ++ + ++
Sbjct: 80 YNMISLLWKGTQLETSMGSIEFASMVGALLIMSQGITLLLIKSLLIFFNYGRPYYYEYSV 139
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
GFS VLFAMK +L + D+Y + + V + +A W ELI+I ++ P SF GHL GIL
Sbjct: 140 GFSGVLFAMKVVLGS-ETDSYTYVHGLRVPSSHAAWLELILIQMVSPGVSFLGHLGGILA 198
Query: 204 GLTY 207
GL +
Sbjct: 199 GLLF 202
>gi|449457305|ref|XP_004146389.1| PREDICTED: uncharacterized protein At3g17611-like [Cucumis sativus]
Length = 314
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
Query: 28 PATLGLVFLQSMVYL--NIFRKPWSTLD-VCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
P TLGL+ ++++L N ++D V +A + + +D KR +LS F H D HL
Sbjct: 20 PITLGLLASNTLIHLRPNFLHHIIPSIDEVWFNAHLIFKHKDLKRFLLSPFYHVGDPHLV 79
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT-SLYYILLAYIVFYITNDTSELSHCAI 143
YNM+SL+ KG QLE G +F S+V L + + + +L+ ++ + ++
Sbjct: 80 YNMISLLWKGTQLETSMGSIEFASMVGALLIMSQGITLLLIKSLLIFFNYGRPYYYEYSV 139
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
GFS VLFAMK +L + D+Y + + V + +A W ELI+I ++ P SF GHL GIL
Sbjct: 140 GFSGVLFAMKVVLGS-ETDSYTYVHGLRVPSSHAAWLELILIQMVSPGVSFLGHLGGILA 198
Query: 204 GLTY 207
GL +
Sbjct: 199 GLLF 202
>gi|357131656|ref|XP_003567452.1| PREDICTED: uncharacterized protein At3g17611-like [Brachypodium
distachyon]
Length = 345
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWSTLD--------VCISADAVIQQRDYKRLILSAFEHG 78
PP T L+ ++VYL +P LD V + +IQ D R LSAF H
Sbjct: 45 PPVTAALIAANALVYL----RP-GALDAVLPPLSRVAFNPYLIIQYGDLTRFFLSAFYHL 99
Query: 79 DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL 138
+ H +YNM SL+ KG QLE G +F S+V L + +LL+ + N+T+
Sbjct: 100 SETHFFYNMTSLLWKGIQLETSVGSVEFASMVAALLALSQGITLLLSKGLLLFGNETAYY 159
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHL 198
A+GFS VLF MK +L D Y + + + A YA W EL++I +P SF GHL
Sbjct: 160 DQYAVGFSGVLFGMKIVLNAWSDD-YVFLHGMVIPAKYAAWAELLLIQAFIPGTSFIGHL 218
Query: 199 SGILVGLTY 207
GIL GLTY
Sbjct: 219 GGILAGLTY 227
>gi|302837730|ref|XP_002950424.1| hypothetical protein VOLCADRAFT_117545 [Volvox carteri f.
nagariensis]
gi|300264429|gb|EFJ48625.1| hypothetical protein VOLCADRAFT_117545 [Volvox carteri f.
nagariensis]
Length = 353
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI S F H D+ HLY+NM SL+ KG LE+ YG F LV + + + Y+L+ ++
Sbjct: 84 RLITSGFLHMDEWHLYFNMSSLVWKGIHLERRYGHKLFALLVAEMLLLSHGLYVLVTLLL 143
Query: 129 FYITNDTSELSH-CAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL 187
++ H A+GFSAVLF +KTIL P Y +I + V YA W EL++I++
Sbjct: 144 CSVSEHRHIYYHQHAVGFSAVLFGLKTILMYNTP-GYDEIFGVRVPTKYACWAELVLIWV 202
Query: 188 LVPNASFKGHLSGILVG 204
LVP +SF GHL GIL G
Sbjct: 203 LVPKSSFIGHLCGILAG 219
>gi|413934803|gb|AFW69354.1| hypothetical protein ZEAMMB73_186009 [Zea mays]
Length = 345
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 108/225 (48%), Gaps = 24/225 (10%)
Query: 1 MTRPRRYELGL-----------ILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPW 49
M+ RR GL + +L+ GA PP T L+ S+VYL +P
Sbjct: 5 MSSARRRRFGLEASRGMLPLLALQVLIEYGRAGASR-PPVTAALLAANSLVYL----RPG 59
Query: 50 -------STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
S V + +I+ D R LS F H + HL+YNM SL+ KG LE G
Sbjct: 60 ALDGVLPSLARVSFNPQLIIEYGDLTRFFLSPFYHLSESHLFYNMTSLLWKGIHLETSMG 119
Query: 103 WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPD 162
+F S+V L + +LL+ + + +DT A+GFS VLFAMK +L D
Sbjct: 120 SAEFASMVAVLLGLSQGITLLLSRGLLLLGDDTMYYDQHAVGFSGVLFAMKVVLNAWSDD 179
Query: 163 AYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
+ + + + A YA W ELI+I + +P SF GHL GIL GL Y
Sbjct: 180 -FVYLHGMVIPAKYAAWAELILIQVFIPGTSFLGHLGGILAGLVY 223
>gi|302756069|ref|XP_002961458.1| hypothetical protein SELMODRAFT_140420 [Selaginella moellendorffii]
gi|300170117|gb|EFJ36718.1| hypothetical protein SELMODRAFT_140420 [Selaginella moellendorffii]
Length = 413
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 4/188 (2%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPWSTLD-VCISADAVIQQRDYKRLILSAFEHGDDMHL 83
+IP T G + L +Y+ + T VC S D VI R I + H +H+
Sbjct: 21 SIPAITGGTLILCVAIYIVDLLIGYDTFQQVCFSTDTVIGNFQVYRAITAVLFHASLLHV 80
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSHC 141
+NM++L+ G LE++ G ++L +++ L V ++ +IL+AYIV Y I S L C
Sbjct: 81 LFNMLALVPIGSSLERVMGSVRYLHVILLLAVSNAVIHILIAYIVAYNPIYVHKSVLMEC 140
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
IGFS +LFAM I L + I + NV A + PW LII +++P S GHLSG
Sbjct: 141 QIGFSGILFAMIVIEGSLYTGQNRSIFGLFNVPAKWYPWVLLIIFQMIMPRVSLLGHLSG 200
Query: 201 ILVGLTYT 208
IL G +Y+
Sbjct: 201 ILSGFSYS 208
>gi|224107010|ref|XP_002314342.1| predicted protein [Populus trichocarpa]
gi|222863382|gb|EEF00513.1| predicted protein [Populus trichocarpa]
Length = 328
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 99/185 (53%), Gaps = 5/185 (2%)
Query: 27 PPATLGLVFLQSMVYLN--IFRKPWSTLD-VCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PP T L+ +++YL R ++D V + +++ RD KR +LS F H D HL
Sbjct: 30 PPVTAALLGANTLIYLRPAFLRHILPSIDQVWFNPHLILKYRDLKRFLLSPFYHVSDSHL 89
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLS-LVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
YNM+SL+ KG QLE G +F S L L + + +L ++ + D S +
Sbjct: 90 VYNMMSLLWKGIQLETSVGSVEFASMLAALLAMSQGITLLLARSLLLFFDYDKPFYSEYS 149
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
GFS VLFAMK +L Q ++ + + + A +A W ELI+I + VP SF GHL GIL
Sbjct: 150 AGFSGVLFAMKVVLNS-QSESLTNVYGLVIPARHAAWAELILIQMFVPGVSFLGHLGGIL 208
Query: 203 VGLTY 207
G+ Y
Sbjct: 209 AGILY 213
>gi|302776366|ref|XP_002971354.1| hypothetical protein SELMODRAFT_147697 [Selaginella moellendorffii]
gi|300161336|gb|EFJ27952.1| hypothetical protein SELMODRAFT_147697 [Selaginella moellendorffii]
Length = 413
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 88/159 (55%), Gaps = 3/159 (1%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
VC S D+VI R I + H +H+ +NM++L+ G LE+I G ++L +++
Sbjct: 50 QVCFSTDSVIGNFQVYRAITAVLFHASLLHVLFNMLALVPIGSSLERIMGSVRYLHVILL 109
Query: 113 LTVFTSLYYILLAYIVFY--ITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI 170
L V ++ +IL+AYIV Y I S L C IGFS +LFAM I L + I +
Sbjct: 110 LAVSNAVIHILIAYIVAYNPIYVHKSVLMECQIGFSGILFAMIVIEGSLYTGQNRSIFGL 169
Query: 171 -NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
NV A + PW LII +++P S GHLSGIL G Y+
Sbjct: 170 FNVPAKWYPWVLLIIFQMIMPRVSLLGHLSGILSGFAYS 208
>gi|348676094|gb|EGZ15912.1| hypothetical protein PHYSODRAFT_334115 [Phytophthora sojae]
Length = 275
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 7/205 (3%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
D PP T+ L+ + ++++ R P + V+ ++ + +S F H +D+HL
Sbjct: 45 DRKPPVTIALIAVMYLLHVQATRTPSLLRPFALCPGKVVANKEIAAVFISPFIHWEDLHL 104
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
Y +++S + KG +LE G F L+++L V T + A+++ + + C
Sbjct: 105 YQSILSFLWKGYKLEGRLGSIGFCVLLVYLIVLTQALIVAGAHVISW-----GAMQECIT 159
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
GFS VL A+K IL P A+ ++ + V YA W EL+I YLLVP +G++
Sbjct: 160 GFSGVLTAIKVILNVNSP-AFTKLYSFKVPTKYAAWLELVITYLLVPKLPILAQAAGLIA 218
Query: 204 GLTYTDTPIGWGL-DYVVDKCQEMI 227
G Y TP G+ D V + Q+++
Sbjct: 219 GYVYVVTPNAQGIVDCVAQQVQQLL 243
>gi|348676108|gb|EGZ15926.1| hypothetical protein PHYSODRAFT_459480 [Phytophthora sojae]
Length = 244
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 7/205 (3%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
D PP T+ L+ + ++++ R P + V+ ++ + +S F H +D+HL
Sbjct: 16 DRKPPVTIALIAVMYLLHVQATRTPSLLRPFALCPGKVVANKEIAAVFISPFIHWEDLHL 75
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
Y +++S + KG +LE G F L+++L V T + A+++ + + C
Sbjct: 76 YQSILSFLWKGYKLEGRLGSIGFCVLLVYLIVLTQALIVAGAHVISW-----GAMQECIT 130
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
GFS VL A+K IL P A+ ++ + V YA W EL+I YLLVP +G++
Sbjct: 131 GFSGVLTAIKVILNVNSP-AFTKLYSFKVPTKYAAWLELVITYLLVPKLPILAQAAGLIA 189
Query: 204 GLTYTDTPIGWGL-DYVVDKCQEMI 227
G Y TP G+ D V + Q+++
Sbjct: 190 GYVYVVTPNAQGIVDCVAQQVQQLL 214
>gi|307103357|gb|EFN51618.1| hypothetical protein CHLNCDRAFT_55006 [Chlorella variabilis]
Length = 326
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 102/203 (50%), Gaps = 24/203 (11%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPW--STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
PP T+ LV Q +L W S C+ +++ + + RL+ S F H D++HLY
Sbjct: 63 PPITILLVVAQVFFFLQPEGFEWVPSIRQGCLLPRSILSGQ-WGRLLWSPFLHADNLHLY 121
Query: 85 YNMVSLILK-------------GRQLEKIYGWGKFLSLVIFLT-VFTSLYYILLAYIVFY 130
YNM SL+ K G QLE G + +LV L V +LY L A + +
Sbjct: 122 YNMTSLLWKASQQLGAGRCCFWGSQLEPRLGSAAYGALVAELALVSNALYMGLAALLARH 181
Query: 131 ITNDTSELSH-CAIGFSAVLFAMKTILTRLQPDAYQQILNINV-----KAIYAPWFELII 184
L H CA+GFS VLF MK +L P + +I I + ++YA W EL++
Sbjct: 182 APALGWSLMHACAVGFSGVLFGMKVVLNHNSPG-WSEIYGIALPTKASASMYACWAELLV 240
Query: 185 IYLLVPNASFKGHLSGILVGLTY 207
+ LLVP ASF GHL GIL GL +
Sbjct: 241 MQLLVPEASFWGHLCGILAGLLH 263
>gi|359481109|ref|XP_002267146.2| PREDICTED: uncharacterized protein At3g58460-like [Vitis vinifera]
gi|296089310|emb|CBI39082.3| unnamed protein product [Vitis vinifera]
Length = 406
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 103/189 (54%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
D IP T +V + S++YL + S +++C S A+I Q R+ + HG +H
Sbjct: 20 DNIPFLTSAVVIICSIIYLVCLLVGYDSFVEICFSPSAIISQFQVYRIYTAIIFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE--LSH 140
+ +NM++L+ G +LE+I G + +++ L +++++L+A +V Y + ++
Sbjct: 80 VLFNMMALVPLGSELERIMGSVRLFYMIVLLATSNAIFHVLIASLVAYNPFYSYHYLMNE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
CAIGFS +LF+M I T L + + + NV A + W L++ LL+ N S GHL
Sbjct: 140 CAIGFSGILFSMIVIETSLSGAQTRSVFGLFNVPAKWYAWILLVVFQLLMTNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|302755222|ref|XP_002961035.1| hypothetical protein SELMODRAFT_28081 [Selaginella moellendorffii]
gi|302767114|ref|XP_002966977.1| hypothetical protein SELMODRAFT_17932 [Selaginella moellendorffii]
gi|300164968|gb|EFJ31576.1| hypothetical protein SELMODRAFT_17932 [Selaginella moellendorffii]
gi|300171974|gb|EFJ38574.1| hypothetical protein SELMODRAFT_28081 [Selaginella moellendorffii]
Length = 155
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 3/138 (2%)
Query: 27 PPATLGLVFLQSMVYL---NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PP T L+ +VYL ++ S +VC+S V++ D KRL+LSAF H D+ HL
Sbjct: 3 PPVTAALILANVIVYLRPGSLHEVLPSIEEVCLSPYLVLRNFDVKRLLLSAFYHVDEAHL 62
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
+YNM+SL+ KG QLE G KF S+V L + +LL +V +T+ + + CA+
Sbjct: 63 FYNMISLLWKGVQLEGRMGSPKFASMVALLLGMSHGLMVLLGTLVSTLTDSPAPYTSCAV 122
Query: 144 GFSAVLFAMKTILTRLQP 161
GFSA+LFA+K +L P
Sbjct: 123 GFSALLFALKVVLNHNSP 140
>gi|226528725|ref|NP_001140801.1| uncharacterized protein LOC100272876 [Zea mays]
gi|194701136|gb|ACF84652.1| unknown [Zea mays]
gi|195636066|gb|ACG37501.1| rhomboid domain containing 1 [Zea mays]
gi|413946850|gb|AFW79499.1| Rhomboid domain containing 1 [Zea mays]
Length = 344
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 98/188 (52%), Gaps = 12/188 (6%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPW-------STLDVCISADAVIQQRDYKRLILSAFEHGD 79
PP T L+ +++YL +P S V + +++ D R LS F H
Sbjct: 41 PPVTAALLAGNALIYL----RPGALDGILPSVTRVSFNPRLIVENGDLVRFFLSPFYHLS 96
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS 139
+ HL+YNM SL+ KG QLE G +F S+V L + +LL+ + + + T+
Sbjct: 97 ESHLFYNMTSLLWKGIQLETSMGSVEFASMVAALLGLSQGIALLLSKGLLLLGDYTAYYD 156
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
A+GFS VLFAMK +L D + + + + A YA W ELI+I + +P SF GHLS
Sbjct: 157 QYAVGFSGVLFAMKVVLNAWSED-FVYLHGMVIPAKYAAWAELILIQVFIPGTSFLGHLS 215
Query: 200 GILVGLTY 207
GIL GL Y
Sbjct: 216 GILAGLVY 223
>gi|255083188|ref|XP_002504580.1| predicted protein [Micromonas sp. RCC299]
gi|226519848|gb|ACO65838.1| predicted protein [Micromonas sp. RCC299]
Length = 381
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 5/185 (2%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWST--LDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
PP TL ++ + ++ P T ++C+SA A+++ + R++ S +GD+MHL
Sbjct: 66 PPVTLAVMGASAALHFGFLNLPMGTSAAEMCLSAGAIVEAGQFYRILTSFLSYGDEMHLI 125
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY-IVFYITNDTSELSHCAI 143
YN+ S + KG LE G KF L+I L V T+ + + Y + Y+ + + C +
Sbjct: 126 YNLSSFLWKGANLEIKMGSEKFTKLLIGLLVCTNAMAVGVMYAMAAYLGMPEAYRNSCVM 185
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPN-ASFKGHLSGIL 202
G + V FA+KTIL + +L I + + +A W EL ++YL+ P+ A H+ GIL
Sbjct: 186 GNNGVNFALKTILFA-DEASNTSMLGITMPSKWASWAELGLMYLMYPHTAGLVVHVCGIL 244
Query: 203 VGLTY 207
VGL Y
Sbjct: 245 VGLAY 249
>gi|242057071|ref|XP_002457681.1| hypothetical protein SORBIDRAFT_03g011570 [Sorghum bicolor]
gi|241929656|gb|EES02801.1| hypothetical protein SORBIDRAFT_03g011570 [Sorghum bicolor]
Length = 344
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 114/226 (50%), Gaps = 26/226 (11%)
Query: 1 MTRPRRYELG-------LILLLVHIL----HLGADTIPPATLGLVFLQSMVYLNIFRKPW 49
M+R RR G L LL + +L GA PP T L+ +++YL +P
Sbjct: 5 MSRGRRRSFGAGASGGMLPLLALQVLIEYGRAGASR-PPVTAALLAANALIYL----RP- 58
Query: 50 STLD--------VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
LD V + +I+ D R LS F H + HL+YNM SL+ KG QLE
Sbjct: 59 GALDGILPSLTRVSFNPWLIIEYGDLVRFFLSPFYHLSESHLFYNMTSLLWKGIQLETSM 118
Query: 102 GWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQP 161
G +F S+V L + +LL+ + + + T+ + A+GFS VLFAMK +L
Sbjct: 119 GSVEFASMVAALLGLSQGITLLLSKGLLLLGDYTAYYNQYAVGFSGVLFAMKVVLNAWSE 178
Query: 162 DAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
D + + + + A YA W ELI+I + +P SF GHLSGIL GL Y
Sbjct: 179 D-FVYLHGMVIPAKYAAWAELILIQVFIPGTSFLGHLSGILAGLVY 223
>gi|242094106|ref|XP_002437543.1| hypothetical protein SORBIDRAFT_10g029120 [Sorghum bicolor]
gi|241915766|gb|EER88910.1| hypothetical protein SORBIDRAFT_10g029120 [Sorghum bicolor]
Length = 344
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWSTLD--------VCISADAVIQQRDYKRLILSAFEHG 78
PP T L+ S++YL +P LD V + +++ D R LS F H
Sbjct: 41 PPVTAALLAANSLIYL----RP-GALDGVLPSLSRVSFNPQLIVEYGDLVRFFLSPFYHL 95
Query: 79 DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL 138
+ HL+YNM SL+ KG QLE G +F S+ L + +LL+ + + +DT+
Sbjct: 96 SESHLFYNMTSLLWKGIQLETSMGSTEFASMSAVLLGLSQGITLLLSRGLLLLGDDTAYY 155
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHL 198
A+GFS +LFAMK +L D + + + + + YA W ELI+I + +P SF G L
Sbjct: 156 DQHAVGFSGILFAMKVVLNAWSDD-FVYLHGMILPSKYAAWAELILIQVFIPGTSFLGQL 214
Query: 199 SGILVGLTY 207
GIL GL Y
Sbjct: 215 GGILAGLVY 223
>gi|326508430|dbj|BAJ99482.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D R LSAF H + H +YNM SL+ KG QLE G +F S+V L + + +LL+
Sbjct: 14 DLTRFFLSAFYHLSETHFFYNMTSLLWKGIQLETSMGSVEFASMVTALLGLSQGFTLLLS 73
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ + N+ A+GFS VLF MK +L D Y + + + A YA W EL++I
Sbjct: 74 KGLLLLGNEVPYYDQYAVGFSGVLFGMKIVLNAWSDD-YVFLHGMVIPAKYAAWAELLLI 132
Query: 186 YLLVPNASFKGHLSGILVGLTY 207
+P SF GHLSGIL GL Y
Sbjct: 133 QAFIPGTSFIGHLSGILAGLAY 154
>gi|356570925|ref|XP_003553633.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
At3g58460-like [Glycine max]
Length = 415
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLD-VCISADAVIQQRDYKRLILSAFEHGDDMH 82
++IP T +V + ++YL + + + VC AV+ + R+ S HG +H
Sbjct: 26 ESIPFLTSAVVVVCGIIYLVCLLVGYDSFNEVCFLPSAVVSRFQVYRIYTSILFHGSLLH 85
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE--LSH 140
+ +NM++L+ G +LE+I G + L ++I + +++++L+A +V + T + ++
Sbjct: 86 VVFNMMALVPLGSELERIMGSVRLLYVIILVATSNAIFHVLIALLVAHNPLLTYDYLMNE 145
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
CAIGFS VLF+M I T L + + + NV A + +F L++ LL+ N S GHL
Sbjct: 146 CAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLC 205
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 206 GILSGFAYT 214
>gi|67968683|dbj|BAE00700.1| unnamed protein product [Macaca fascicularis]
Length = 232
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 69/126 (54%)
Query: 87 MVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFS 146
M S++ KG LE+ G F ++ ++ T + Y+LL + V ++ CA+GFS
Sbjct: 1 MASMLWKGIHLERRLGSRWFALVITTFSILTGVVYLLLQFAVAEFMDEPDFKRSCAVGFS 60
Query: 147 AVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
VLFA+K + P + IL V +A W EL+ I+L P SF GHL+GILVGL
Sbjct: 61 GVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLM 120
Query: 207 YTDTPI 212
YT P+
Sbjct: 121 YTQGPL 126
>gi|6735363|emb|CAB68184.1| putative protein [Arabidopsis thaliana]
Length = 411
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+ IP T +V + ++YL + T +VC A+I + R + HG +H
Sbjct: 20 NAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
+ +NM++L+ G +LE+I G + L L + L ++ ++L+A + Y N + H
Sbjct: 80 VLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGY--NPFYQYDHLM 137
Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
CAIGFS +LF+M I T L + + + NV A PW LI+ LL+ N S GH
Sbjct: 138 NECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGH 197
Query: 198 LSGILVGLTYT 208
L GIL G +Y+
Sbjct: 198 LCGILSGFSYS 208
>gi|255581586|ref|XP_002531598.1| Rhomboid protein, putative [Ricinus communis]
gi|223528794|gb|EEF30801.1| Rhomboid protein, putative [Ricinus communis]
Length = 397
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
++IP T +V + +YL + S ++C A+I R+ S HG +H
Sbjct: 20 ESIPFLTSAIVIVCGTIYLACLLIGYDSFFEICFLPSAIISHFQVYRIYTSILFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSH 140
+++NM++L+ G +LE+I G + L L I L +++++ +A +V + +D ++
Sbjct: 80 VFFNMMALVPLGSELERIMGSVRLLYLTILLATSNAIFHLFIATLVAHNPFHSDQHLINE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
CAIGFS +LF+M I T L + + + NV A + + L++ LL+ N S GHL
Sbjct: 140 CAIGFSGILFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFILLVVFQLLMTNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|356505467|ref|XP_003521512.1| PREDICTED: uncharacterized protein At3g58460-like [Glycine max]
Length = 414
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
++IP T +V + ++YL + + +VC AV+ + R+ S HG +H
Sbjct: 26 ESIPFLTSAVVVVCGVIYLICLLVGYDSFYEVCFLPSAVVSRFQVYRIYTSILFHGSLLH 85
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE--LSH 140
+ +NM++L+ G +LE+I G + L ++I + +++++L+A +V + T + ++
Sbjct: 86 VVFNMMALVPLGSELERIMGSVRLLYVIILVATSNAIFHVLIALLVAHNPLLTYDYLMNE 145
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
CAIGFS VLF+M I T L + + + NV A + +F L++ LL+ N S GHL
Sbjct: 146 CAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLC 205
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 206 GILSGFAYT 214
>gi|18410961|ref|NP_567064.1| rhomboid-like protein 15 [Arabidopsis thaliana]
gi|73921121|sp|Q8LB17.2|Y3846_ARATH RecName: Full=Uncharacterized protein At3g58460
gi|22531096|gb|AAM97052.1| putative protein [Arabidopsis thaliana]
gi|23197956|gb|AAN15505.1| putative protein [Arabidopsis thaliana]
gi|332646263|gb|AEE79784.1| rhomboid-like protein 15 [Arabidopsis thaliana]
Length = 403
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+ IP T +V + ++YL + T +VC A+I + R + HG +H
Sbjct: 20 NAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
+ +NM++L+ G +LE+I G + L L + L ++ ++L+A + Y N + H
Sbjct: 80 VLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGY--NPFYQYDHLM 137
Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
CAIGFS +LF+M I T L + + + NV A PW LI+ LL+ N S GH
Sbjct: 138 NECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGH 197
Query: 198 LSGILVGLTYT 208
L GIL G +Y+
Sbjct: 198 LCGILSGFSYS 208
>gi|21593075|gb|AAM65024.1| unknown [Arabidopsis thaliana]
Length = 403
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+ IP T +V + ++YL + T +VC A+I + R + HG +H
Sbjct: 20 NAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
+ +NM++L+ G +LE+I G + L L + L ++ ++L+A + Y N + H
Sbjct: 80 VLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGY--NPFYQYDHLM 137
Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
CAIGFS +LF+M I T L + + + NV A PW LI+ LL+ N S GH
Sbjct: 138 NECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGH 197
Query: 198 LSGILVGLTYT 208
L GIL G +Y+
Sbjct: 198 LCGILSGFSYS 208
>gi|334186083|ref|NP_001190126.1| rhomboid-like protein 15 [Arabidopsis thaliana]
gi|332646264|gb|AEE79785.1| rhomboid-like protein 15 [Arabidopsis thaliana]
Length = 426
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+ IP T +V + ++YL + T +VC A+I + R + HG +H
Sbjct: 43 NAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 102
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
+ +NM++L+ G +LE+I G + L L + L ++ ++L+A + Y N + H
Sbjct: 103 VLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGY--NPFYQYDHLM 160
Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
CAIGFS +LF+M I T L + + + NV A PW LI+ LL+ N S GH
Sbjct: 161 NECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGH 220
Query: 198 LSGILVGLTYT 208
L GIL G +Y+
Sbjct: 221 LCGILSGFSYS 231
>gi|297820678|ref|XP_002878222.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297324060|gb|EFH54481.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+ IP T +V + ++YL + T +VC A+I + R + HG +H
Sbjct: 20 NAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
+ +NM++L+ G +LE+I G + L L I L ++ ++++A + Y N + H
Sbjct: 80 VLFNMMALVPMGSELERIMGSVRLLYLTILLATTNAILHLIIASLAGY--NPFYQYDHLM 137
Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
CAIGFS +LF+M I T L + + + NV A PW LI+ LL+ N S GH
Sbjct: 138 NECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGH 197
Query: 198 LSGILVGLTYT 208
L GIL G +Y+
Sbjct: 198 LCGILSGFSYS 208
>gi|227204337|dbj|BAH57020.1| AT3G58460 [Arabidopsis thaliana]
Length = 362
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+ IP T +V + ++YL + T +VC A+I + R + HG +H
Sbjct: 20 NAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
+ +NM++L+ G +LE+I G + L L + L ++ ++L+A + Y N + H
Sbjct: 80 VLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGY--NPFYQYDHLM 137
Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
CAIGFS +LF+M I T L + + + NV A PW LI+ LL+ N S GH
Sbjct: 138 NECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGH 197
Query: 198 LSGILVGLTYT 208
L GIL G +Y+
Sbjct: 198 LCGILSGFSYS 208
>gi|218187998|gb|EEC70425.1| hypothetical protein OsI_01431 [Oryza sativa Indica Group]
Length = 348
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
V + +I D R LSAF H + H ++NM SL+ KG QLE G +F S+V L
Sbjct: 76 VAFNPHLIIHYCDLTRFFLSAFYHLSETHFFFNMSSLLWKGIQLETSMGSVEFASMVAAL 135
Query: 114 TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVK 173
+ +LL+ + ND + A+GFS VLF MK +L D Y + + +
Sbjct: 136 LGMSQGITLLLSKGLLLFGNDEAYYDQYAVGFSGVLFGMKVVLNAWS-DDYVFLHGVVIP 194
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
A YA W EL++I +P S GHL GIL GL Y
Sbjct: 195 AKYAAWAELLLIQAFIPGTSLIGHLGGILAGLAY 228
>gi|115436016|ref|NP_001042766.1| Os01g0283500 [Oryza sativa Japonica Group]
gi|13486724|dbj|BAB39959.1| OSJNBa0004B13.13 [Oryza sativa Japonica Group]
gi|13486740|dbj|BAB39974.1| unknown protein [Oryza sativa Japonica Group]
gi|15408827|dbj|BAB64219.1| unknown protein [Oryza sativa Japonica Group]
gi|113532297|dbj|BAF04680.1| Os01g0283500 [Oryza sativa Japonica Group]
gi|222618217|gb|EEE54349.1| hypothetical protein OsJ_01336 [Oryza sativa Japonica Group]
Length = 350
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
V + +I D R LSAF H + H ++NM SL+ KG QLE G +F S+V L
Sbjct: 78 VAFNPHLIIHYCDLTRFFLSAFYHLSETHFFFNMSSLLWKGIQLETSMGSVEFASMVAAL 137
Query: 114 TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVK 173
+ +LL+ + ND + A+GFS VLF MK +L D Y + + +
Sbjct: 138 LGMSQGITLLLSKGLLLFGNDEAYYDQYAVGFSGVLFGMKVVLNAWS-DDYVFLHGVVIP 196
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
A YA W EL++I +P S GHL GIL GL Y
Sbjct: 197 AKYAAWAELLLIQAFIPGTSLIGHLGGILAGLAY 230
>gi|159464026|ref|XP_001690243.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158284231|gb|EDP09981.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 394
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
VC+S + + RL+ S HG +H+ +NM++ + LE++ G +F L++
Sbjct: 48 GVCLSPYETVVHYEVYRLLTSVLVHGGLLHVTFNMLAFVPMACSLERLVGTVQFTYLLLL 107
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-N 171
+TV L + ++++F+ + + CAIGFS V+F + + +++ I +
Sbjct: 108 MTVLAGLVFTATSFLLFFSHVLPAAMRQCAIGFSGVIFGLIVVDNAQSASSHRSIFGLFT 167
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTD 209
V A Y PW L+ LL+P+ SF GHL+G+LVG +
Sbjct: 168 VPAAYYPWALLLFWQLLMPSVSFIGHLAGVLVGAAWVG 205
>gi|358348102|ref|XP_003638088.1| hypothetical protein MTR_118s0012 [Medicago truncatula]
gi|355504023|gb|AES85226.1| hypothetical protein MTR_118s0012 [Medicago truncatula]
Length = 403
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 3/159 (1%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
++C AV+ + R+ + HG +H+ +NM++L+ G +LE+I G + L + I
Sbjct: 50 EICFLPSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTIL 109
Query: 113 LTVFTSLYYILLAYIVFY--ITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI 170
L ++ ++ +A +V Y I + ++ CAIGFS VLF+M I T L + + +
Sbjct: 110 LATSNAIIHVFIALLVAYNPILTNGYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGL 169
Query: 171 -NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
NV A + +F L++ LL+ N S GHLSGI+ G YT
Sbjct: 170 FNVPAKWYAFFLLVVFQLLMQNVSLLGHLSGIVSGFAYT 208
>gi|326500926|dbj|BAJ95129.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 401
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 8/191 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+ P T G+ + + +YL + S ++C AV R S HG +H
Sbjct: 20 SSTPFITSGVTIICAAIYLVCLLIGYDSYAEICFLPSAVASHFQVYRFYTSVLFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
+ +NM++ + G +LE+I G + L L+ L +++++++A++V Y N +S+
Sbjct: 80 VLFNMLTFVPLGTELERIMGSVRLLFLMFLLATTNAIFHLIVAFLVDY--NPLYHVSYLV 137
Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
C+IGFS V+F+M I T L Y+ + + NV A + W LI+ L N S GH
Sbjct: 138 DECSIGFSGVIFSMIVIETSLSGVQYRSVFGLFNVPAKWYAWILLILFQFLASNVSLLGH 197
Query: 198 LSGILVGLTYT 208
LSGIL G YT
Sbjct: 198 LSGILSGFAYT 208
>gi|242033515|ref|XP_002464152.1| hypothetical protein SORBIDRAFT_01g013170 [Sorghum bicolor]
gi|241918006|gb|EER91150.1| hypothetical protein SORBIDRAFT_01g013170 [Sorghum bicolor]
Length = 396
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 10/192 (5%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+IP T G+V + ++YL + S ++C AV R S HG +H
Sbjct: 20 SSIPFVTSGVVLICGVIYLLCLLIGYDSYAEICFLPSAVASHFQVYRFYTSVLFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY-----ITNDTSE 137
+ +NM++L+ G +LE+I G + L L+ L ++ ++ +A++V Y + N +E
Sbjct: 80 VLFNMLALVPLGTELERIMGSVRLLFLMFLLATTNAILHLTIAFLVAYNPLFPVPNLVNE 139
Query: 138 LSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKG 196
C+IGFS V+F+M I T L + + + NV A + W L++ L N S G
Sbjct: 140 ---CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLG 196
Query: 197 HLSGILVGLTYT 208
HL GIL G YT
Sbjct: 197 HLCGILSGFAYT 208
>gi|255080710|ref|XP_002503928.1| predicted protein [Micromonas sp. RCC299]
gi|226519195|gb|ACO65186.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
+C++ V++ R+ S HG +HL +NM++ + LE++ G +F +++
Sbjct: 45 QICMAPSWVLRDGQVYRMFTSVLFHGSVLHLAFNMMAFVPMASSLERLLGTVQFTYILVL 104
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-IN 171
T+ S++++ LA+I T + CAIGFS V+F + + T L A + I
Sbjct: 105 FTLLASIFHVGLAFI--GGTLGYPSMHECAIGFSGVIFGVIVVDTHLSSVAQRSIFGFFT 162
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
V + + P LI + +L+P+ SF GHLSG+L GLTY
Sbjct: 163 VPSQWYPLSLLIFLQVLMPSVSFVGHLSGLLAGLTY 198
>gi|428171532|gb|EKX40448.1| hypothetical protein GUITHDRAFT_75573, partial [Guillardia theta
CCMP2712]
Length = 186
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I R R++ SAF HG +HL +NM + + G +LE++ G +F++L++ + + Y
Sbjct: 9 IDHRQCYRIVTSAFVHGGFLHLGFNMYNFVFAGGRLEQMMGTVRFVNLIVVWVLVLGILY 68
Query: 122 ILLAYI--VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ-QILNINVKAIYAP 178
++A++ +F +E CA+GFS VLFA+ T+ + P Q + + A + P
Sbjct: 69 FVIAFVGALFQYARFWNE---CAVGFSGVLFAILTVDSFAAPLGTQFSMFGWQIPARWYP 125
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLTYTD 209
W LI +L+PN SF GHL GIL ++
Sbjct: 126 WAMLIFTQVLMPNVSFIGHLVGILGAFVFSH 156
>gi|168022284|ref|XP_001763670.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685163|gb|EDQ71560.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 214
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 4/186 (2%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
+P T G+VFL + +Y+ + S + VC+ ++ + R S H +HL
Sbjct: 21 AVPCVTAGVVFLCTAIYVICLLFGYDSFIQVCLLPKYIVDRVQVYRPYTSIVFHASILHL 80
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSHC 141
+NM++L G LE+I G ++L ++ + +L +++AY+ Y + + C
Sbjct: 81 VFNMLALAPIGSGLERILGSVRYLHVLFIMATSNALIEVVIAYLAAYNPVHPYPGLMYEC 140
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
IGFS V+F+M + T L P + + +V A + PW L++ LL+P AS GHL+G
Sbjct: 141 GIGFSGVIFSMIVMETSLNPVQTRSVFGFFSVPAKWYPWALLVLFQLLMPRASLLGHLAG 200
Query: 201 ILVGLT 206
IL G
Sbjct: 201 ILSGFA 206
>gi|224091513|ref|XP_002309277.1| predicted protein [Populus trichocarpa]
gi|222855253|gb|EEE92800.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
++IP T +V + ++YL + + ++C AV+ R+ S F HG +H
Sbjct: 20 ESIPFLTSAVVVVCGVIYLVCLLIGYDSFYEICFLPTAVVSHFQVYRIYTSIFFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE--LSH 140
+ +NM++L+ G +LE+I G + L+I L +++++ +A +V + + L
Sbjct: 80 VLFNMLALVPLGSELERIMGSIRLAYLIILLATTNAIFHLFIALLVAHNPFHPYQYLLDE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
CAIGFS +LF+M I T L + + + NV A + + L+ LL+ N S GHL
Sbjct: 140 CAIGFSGILFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFILLVAFQLLMTNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|357119970|ref|XP_003561705.1| PREDICTED: uncharacterized protein At3g58460-like [Brachypodium
distachyon]
Length = 403
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
++C AV R S HG +H+ +NM++L G +LE+I G + L L+
Sbjct: 50 EICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFNMLTLAPLGTELERIMGSVRLLFLMFL 109
Query: 113 LTVFTSLYYILLAYIVFY--ITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI 170
L ++ ++++A++V Y + S + C+IGFS VLF+M I T L + + +
Sbjct: 110 LATTNAVLHLIVAFLVAYNPLYPVPSLVDECSIGFSGVLFSMIVIETSLSGVQSRSVFGL 169
Query: 171 -NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
N+ A + W LI+ L N S GHLSGIL G YT
Sbjct: 170 FNIPAKWYAWILLILFQFLASNVSLLGHLSGILSGFAYT 208
>gi|357128028|ref|XP_003565678.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
At3g17611-like [Brachypodium distachyon]
Length = 312
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 18/191 (9%)
Query: 23 ADTIPPATLGLVFLQSMVYLN------IFRKPWSTLDVCISADAVIQQRDYKRLILSAFE 76
A PP T L+ + +L + W ++ + ++Q D +R SAF
Sbjct: 34 AGIPPPVTAALIAANVLAHLRPGLLDELLPPLWRVIEFXTT---LLQYGDLRRFFSSAFY 90
Query: 77 HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTS 136
H ++HL NM SL+ G +LE G +F S+V FL + + ILL+ + + N+++
Sbjct: 91 HVSELHLLMNMTSLLSAGDELETSMGSFEFASMVAFLLGLSKGFTILLSKSLLLLGNNSA 150
Query: 137 ELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
+ GFS VLF M +L L + ++ YA L++ +L+P ASF G
Sbjct: 151 YYHQHSAGFSGVLFGMDVVLNDLAGEGPEK---------YAVCARLLLTQVLIPEASFIG 201
Query: 197 HLSGILVGLTY 207
HL GIL GLTY
Sbjct: 202 HLGGILAGLTY 212
>gi|449518911|ref|XP_004166479.1| PREDICTED: uncharacterized protein At3g58460-like [Cucumis sativus]
Length = 344
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
S ++VC A++ R+ S HG +H+ +NM++L+ G +LE+I G + L L
Sbjct: 55 SFVEVCFLPVAILSHFQVYRIFTSVLFHGSLLHVLFNMLALVPLGSELERIMGSIRMLYL 114
Query: 110 VIFLTVFTSLYYILLAYIVFY--ITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI 167
I L + ++ ++ +A ++ + + + ++ CAIGFS +LF++ I T L + +
Sbjct: 115 TILLAISNAIIHLFIAVVMAHNPFHHYDNLMNECAIGFSGILFSLIVIETSLSGIQSRSV 174
Query: 168 LNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
+ NV A + W L++ LL+ N SF GHL GI+ G Y
Sbjct: 175 FGLFNVPAQWYVWILLVVFQLLMTNVSFLGHLCGIITGFAY 215
>gi|62733420|gb|AAX95537.1| Putative Rhomboid family protein [Oryza sativa Japonica Group]
Length = 393
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 8/190 (4%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
+IP T G++ + +YL + + ++C V + R S HG +H+
Sbjct: 15 SIPFITSGVILICGAIYLVCLLTGYDSFAEICFLPSVVASRFQVYRFYTSVVFHGSLLHV 74
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL----S 139
+NM++L+ G +LE+I G + L L+ L +++++++A++ Y N L
Sbjct: 75 LFNMLALVPLGTELERIMGSVRLLFLMFLLATTNAIFHLIIAFLAAY--NPLYPLHFLVD 132
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHL 198
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GHL
Sbjct: 133 ECSIGFSGVIFSMIVIETSLSGVQTRSVFGLFNVPANWYAWILLVLFQFLASNVSLLGHL 192
Query: 199 SGILVGLTYT 208
GIL G YT
Sbjct: 193 CGILSGFAYT 202
>gi|31712095|gb|AAP68399.1| unknown protein [Oryza sativa Japonica Group]
gi|108710126|gb|ABF97921.1| expressed protein [Oryza sativa Japonica Group]
gi|218193411|gb|EEC75838.1| hypothetical protein OsI_12827 [Oryza sativa Indica Group]
gi|222625474|gb|EEE59606.1| hypothetical protein OsJ_11927 [Oryza sativa Japonica Group]
Length = 399
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 8/190 (4%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
+IP T G++ + +YL + + ++C V + R S HG +H+
Sbjct: 21 SIPFITSGVILICGAIYLVCLLTGYDSFAEICFLPSVVASRFQVYRFYTSVVFHGSLLHV 80
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL----S 139
+NM++L+ G +LE+I G + L L+ L +++++++A++ Y N L
Sbjct: 81 LFNMLALVPLGTELERIMGSVRLLFLMFLLATTNAIFHLIIAFLAAY--NPLYPLHFLVD 138
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHL 198
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GHL
Sbjct: 139 ECSIGFSGVIFSMIVIETSLSGVQTRSVFGLFNVPANWYAWILLVLFQFLASNVSLLGHL 198
Query: 199 SGILVGLTYT 208
GIL G YT
Sbjct: 199 CGILSGFAYT 208
>gi|449459580|ref|XP_004147524.1| PREDICTED: uncharacterized protein At3g58460-like [Cucumis sativus]
Length = 397
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
S ++VC A++ R+ S HG +H+ +NM++L+ G +LE+I G + L L
Sbjct: 47 SFVEVCFLPVAILSHFQVYRIFTSVLFHGSLLHVLFNMLALVPLGSELERIMGSIRMLYL 106
Query: 110 VIFLTVFTSLYYILLAYIVFY--ITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI 167
I L + ++ ++ +A ++ + + + ++ CAIGFS +LF++ I T L + +
Sbjct: 107 TILLAISNAIIHLFIAVVMAHNPFHHYDNLMNECAIGFSGILFSLIVIETSLSGIQSRSV 166
Query: 168 LNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
+ NV A + W L++ LL+ N SF GHL GI+ G Y
Sbjct: 167 FGLFNVPAQWYVWILLVVFQLLMTNVSFLGHLCGIITGFAY 207
>gi|108710127|gb|ABF97922.1| expressed protein [Oryza sativa Japonica Group]
Length = 379
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 8/190 (4%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
+IP T G++ + +YL + + ++C V + R S HG +H+
Sbjct: 21 SIPFITSGVILICGAIYLVCLLTGYDSFAEICFLPSVVASRFQVYRFYTSVVFHGSLLHV 80
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL----S 139
+NM++L+ G +LE+I G + L L+ L +++++++A++ Y N L
Sbjct: 81 LFNMLALVPLGTELERIMGSVRLLFLMFLLATTNAIFHLIIAFLAAY--NPLYPLHFLVD 138
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHL 198
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GHL
Sbjct: 139 ECSIGFSGVIFSMIVIETSLSGVQTRSVFGLFNVPANWYAWILLVLFQFLASNVSLLGHL 198
Query: 199 SGILVGLTYT 208
GIL G YT
Sbjct: 199 CGILSGFAYT 208
>gi|301122523|ref|XP_002908988.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262099750|gb|EEY57802.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 269
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 10/188 (5%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
D PP TL L+ + ++++ R P L + V ++ +IL+ F H ++++L
Sbjct: 39 DRKPPVTLALMGIMYLLHVQAKRMPSLLLSYALCPGKVAANKEIGAVILAPFIHSEELYL 98
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
+S + KG +LE G F L+++L V + L + A+++ C
Sbjct: 99 ----LSFLWKGYKLEGRLGSIGFCILLVYLIVVSQLLIVFGAHMI-----SMGATQECFT 149
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
GFS VL AMK IL P + ++ + + YA W EL+I YLLVP +G++
Sbjct: 150 GFSGVLTAMKVILNVNSPT-FTKLYSFKIPTKYAAWLELLITYLLVPKLPLLAQAAGLVA 208
Query: 204 GLTYTDTP 211
G Y TP
Sbjct: 209 GYIYVVTP 216
>gi|224001444|ref|XP_002290394.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973816|gb|EED92146.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 331
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 1/181 (0%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
+IP ATL ++ L VYL + + + V+ +Y R+I S+ HG MH+
Sbjct: 10 SIPLATLSIMALCCFVYLYQLAFDPTLHNFTMCPRLVLYMNEYYRIITSSLFHGSLMHIG 69
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIG 144
NM+S + G LEK +G V++ + TS+ Y+ +++++ + ++G
Sbjct: 70 MNMMSTMAIGTSLEKRFGTFTMALTVLWGVLLTSVIYMTTSWLLYVGFGYEKMMYQHSLG 129
Query: 145 FSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGILV 203
FS V+F + + L P+ + + I V + PW L+++ ++P SF GHLSGIL+
Sbjct: 130 FSGVIFQLSVLEANLTPNRSRSVFGMIQVSSKMYPWCLLVVLQFIMPQISFLGHLSGILL 189
Query: 204 G 204
G
Sbjct: 190 G 190
>gi|414872101|tpg|DAA50658.1| TPA: hypothetical protein ZEAMMB73_465757 [Zea mays]
Length = 381
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+IP T G++ + ++YL + S +++C AV R S HG +H
Sbjct: 20 SSIPFVTSGVILICGVIYLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSH 140
+ +NM++L+ G +LE+I G + L L++ L ++ ++ +A++V Y + + + ++
Sbjct: 80 VLFNMLALVPLGTELERIMGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|212722872|ref|NP_001131556.1| uncharacterized protein LOC100192896 [Zea mays]
gi|194691838|gb|ACF80003.1| unknown [Zea mays]
gi|414872100|tpg|DAA50657.1| TPA: hypothetical protein ZEAMMB73_465757 [Zea mays]
Length = 321
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+IP T G++ + ++YL + S +++C AV R S HG +H
Sbjct: 20 SSIPFVTSGVILICGVIYLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSH 140
+ +NM++L+ G +LE+I G + L L++ L ++ ++ +A++V Y + + + ++
Sbjct: 80 VLFNMLALVPLGTELERIMGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|195627118|gb|ACG35389.1| rhomboid family protein [Zea mays]
Length = 396
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+IP T G++ + ++YL + S +++C AV R S HG +H
Sbjct: 20 SSIPFVTSGVILICGVIYLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSH 140
+ +NM++L+ G +LE+I G + L L++ L ++ ++ +A++V Y + + + ++
Sbjct: 80 VLFNMLALVPLGTELERIMGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|414872102|tpg|DAA50659.1| TPA: hypothetical protein ZEAMMB73_465757 [Zea mays]
Length = 390
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+IP T G++ + ++YL + S +++C AV R S HG +H
Sbjct: 20 SSIPFVTSGVILICGVIYLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSH 140
+ +NM++L+ G +LE+I G + L L++ L ++ ++ +A++V Y + + + ++
Sbjct: 80 VLFNMLALVPLGTELERIMGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|223942663|gb|ACN25415.1| unknown [Zea mays]
gi|414872103|tpg|DAA50660.1| TPA: rhomboid family protein [Zea mays]
Length = 396
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 4/189 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPW-STLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+IP T G++ + ++YL + S +++C AV R S HG +H
Sbjct: 20 SSIPFVTSGVILICGVIYLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSH 140
+ +NM++L+ G +LE+I G + L L++ L ++ ++ +A++V Y + + + ++
Sbjct: 80 VLFNMLALVPLGTELERIMGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|294460477|gb|ADE75816.1| unknown [Picea sitchensis]
Length = 410
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 8/189 (4%)
Query: 26 IPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
+P T GLV + ++YL + + +C +I + R+ S HG +H+
Sbjct: 22 VPFITSGLVAVCGIIYLVCLLVGYDSFYAICFWPAQLILRLQVYRIYTSVVFHGSVLHVM 81
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE----LSH 140
+NM++L+ G LE+I G ++L + + L ++ ++L+AY+ + N +
Sbjct: 82 FNMMALVPIGSGLERIMGSVRYLHVTLLLATCNAVLHLLIAYLAAH--NPVHPYPFFMDE 139
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLS 199
C IGFS ++FAM + T L + + + + NV + LI+ LL+PN S GHL
Sbjct: 140 CTIGFSGIIFAMIVMETSLNGNQSRSVFGLFNVPGKWYASILLILFQLLMPNVSLLGHLC 199
Query: 200 GILVGLTYT 208
GIL G YT
Sbjct: 200 GILSGFAYT 208
>gi|18419592|gb|AAL69367.1|AF462204_1 unknown [Narcissus pseudonarcissus]
Length = 161
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 5/155 (3%)
Query: 27 PPATLGLVFLQSMVYL--NIFRKPWSTLD-VCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PP T GL+ +++YL + T+D +C + +++ D +RL LSAF H + HL
Sbjct: 8 PPVTAGLILTNALIYLRPGALDRILPTVDEICFNPHLILKHGDLRRLFLSAFYHMGESHL 67
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA-YIVFYITNDTSELSHCA 142
YNM+SL+ KG QLE G +F S+V L + +LLA ++ + T + +
Sbjct: 68 VYNMMSLLWKGIQLETFMGSLEFASMVAALLGLSQGMTLLLAKSLLVFFDYGTPYYNQYS 127
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
+GFS VLFAMK +L Q D Y + + V + +A
Sbjct: 128 VGFSGVLFAMKVVLNS-QADDYTYVHGMMVPSRHA 161
>gi|403374294|gb|EJY87090.1| hypothetical protein OXYTRI_06350 [Oxytricha trifallax]
Length = 256
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
Query: 46 RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGK 105
++ + +C++ V+ + + R++ S F HG+ H+++NM L++ G ++EK YG
Sbjct: 2 KRELTEAAICLAP--VLDYQQFYRIVTSEFSHGNVAHIFFNMCGLLVFGVEVEKTYGTLY 59
Query: 106 FLSLVIFLTVFTSL----YYILLAYIV-FYITNDTSELSHCAIGFSAVLFAMKTILTRLQ 160
+ + +L + +++ +++L+A+++ T +C +G+S +LF + +I+ +
Sbjct: 60 YAMINFWLMMISNILSLAFFMLMAFVIPEEYRGGTQNFFYCGVGYSNILFGL-SIIFAYK 118
Query: 161 PDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
D Q + + + Y PWF +I+I+ + N+SF GH G++ GL
Sbjct: 119 GDTQQNFMGLCKFEKKYVPWFYMILIFFTIENSSFIGHFLGMITGL 164
>gi|167523737|ref|XP_001746205.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775476|gb|EDQ89100.1| predicted protein [Monosiga brevicollis MX1]
Length = 280
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 17 HILHLGADTIPPATLGLVFLQSMVYLNIFRK----PWSTLDVCISADAVIQQRDYKRLIL 72
++ +G + IPPATL L L ++V+L++ P C+ A+++ + + RL
Sbjct: 80 QVMQIGIENIPPATLFLFGLNTVVHLDLLAPLGIYPPPIQASCLLPAAIVEGQAWLRLFW 139
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYIT 132
H HLYYNMVSL+ KGR+LE G + L L V ++ + LAY++
Sbjct: 140 PVILHTSSYHLYYNMVSLLYKGRKLEPRLGTERMLMLTALFGVGGNMLHTGLAYLLHLAG 199
Query: 133 NDTSELSHCAIGFSAVLFAMK 153
S +S C++GFS VLFA+K
Sbjct: 200 FYDSYVS-CSVGFSGVLFALK 219
>gi|115454379|ref|NP_001050790.1| Os03g0651100 [Oryza sativa Japonica Group]
gi|62733419|gb|AAX95536.1| Putative Rhomboid family protein [Oryza sativa Japonica Group]
gi|113549261|dbj|BAF12704.1| Os03g0651100 [Oryza sativa Japonica Group]
Length = 222
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+IP T G++ + +YL + + ++C V + R S HG +H
Sbjct: 20 GSIPFITSGVILICGAIYLVCLLTGYDSFAEICFLPSVVASRFQVYRFYTSVVFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL---- 138
+ +NM++L+ G +LE+I G + L L+ L +++++++A++ Y N L
Sbjct: 80 VLFNMLALVPLGTELERIMGSVRLLFLMFLLATTNAIFHLIIAFLAAY--NPLYPLHFLV 137
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
C+IGFS V+F+M I T L + + + NV A + W L++ L N S GH
Sbjct: 138 DECSIGFSGVIFSMIVIETSLSGVQTRSVFGLFNVPANWYAWILLVLFQFLASNVSLLGH 197
Query: 198 LSGILVG 204
L GIL G
Sbjct: 198 LCGILSG 204
>gi|301122517|ref|XP_002908985.1| serine protease family S54, putative [Phytophthora infestans T30-4]
gi|262099747|gb|EEY57799.1| serine protease family S54, putative [Phytophthora infestans T30-4]
Length = 298
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 96/196 (48%), Gaps = 25/196 (12%)
Query: 11 LILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKP--WSTLDVCISADAVIQQRDYK 68
L++L+ I L + PP TLGL+ L ++ + P +S +C D V+ D
Sbjct: 26 LLMLMQQIQQL--ERKPPVTLGLMALMYGLHFQKEQSPELFSPYSLC--PDRVLSHWDLT 81
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R++ S H DD HLY+NMVS + KG LE G +FL V++L V + +++A ++
Sbjct: 82 RIVASGLIHVDDWHLYHNMVSFLWKGCNLEYKMGSVRFLLTVVYLLVLCHVLVVVVALVL 141
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
A F M +L P A+ + V YA W EL++I+ L
Sbjct: 142 ------------------ATGFQMPVLLNHNSP-AFSSVYGFQVPTKYAAWLELVVIHFL 182
Query: 189 VPNASFKGHLSGILVG 204
VP +SF GH+ GIL G
Sbjct: 183 VPRSSFIGHMCGILAG 198
>gi|402584901|gb|EJW78842.1| hypothetical protein WUBG_10251 [Wuchereria bancrofti]
Length = 153
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPW----STLDVCIS 57
R R+ G+ LL + + + IPP TL ++ Q ++L F P+ T +C+
Sbjct: 6 NRRRQNNYGIYLLAYQLFN--SRYIPPVTLAVIIFQMAIFLGYF--PFLGQHRTEAMCLL 61
Query: 58 ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT 117
++ + ++ R++ S H DDMHLY+NM+SL+ KGR+LE G +FL L+ V T
Sbjct: 62 PSRILYRSEWLRMLASTVMHVDDMHLYFNMISLLWKGRRLEPWLGSNRFLLLLAVFAVAT 121
Query: 118 SLYYILLAYIV--FYITNDTSELSHCAIGFSA 147
+ + L+Y+ + N ++ CA+GFS
Sbjct: 122 NCTMVGLSYLADEVFSFNGGGYMNQCAVGFSG 153
>gi|357128026|ref|XP_003565677.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
At3g17611-like [Brachypodium distachyon]
Length = 322
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++Q D +R AF H ++ HL NM SL+ G QLE G KF S+V L + +
Sbjct: 75 LLQYGDLRRFFFPAFYHANEFHLLQNMTSLLWTGDQLETSXGSFKFASMVASLLGLSKGF 134
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
ILL+ + ND + IGFS VLF M +L D+ + + + A
Sbjct: 135 TILLSEGFLLLGNDKAYYQQHYIGFSGVLFGMDVVLN----DSVGEGPEMCAVFLCA--- 187
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLT 206
L++I L+P ASF HL GIL GLT
Sbjct: 188 NLLLIQDLIPEASFIAHLGGILAGLT 213
>gi|326529769|dbj|BAK04831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 274
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 14/196 (7%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ G++ L S+++ I +K DV +S +A ++ + RLI +AF H +HL +NM
Sbjct: 13 PASSGVIALCSLIWFLIQKKGIGYADVGLSYEAAVEGGQHWRLITAAFSHVSVVHLVFNM 72
Query: 88 VSLILKG--RQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----C 141
+L G QL G G + + T+ + LL ++++ ++ +
Sbjct: 73 SALWSLGAVEQLGPQAGLG--VQYYLHYTLVLVVLSGLLVLGIYHVMIRRFKVDYFRRVT 130
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
A+G+S V+F TIL QP + + + ++ +AP+ LI ++VP ASF GHLSG
Sbjct: 131 AVGYSCVVFGWMTILAAKQPSSKLNLFGVLSLPISFAPFESLIFTSIMVPQASFVGHLSG 190
Query: 201 ILVGLTYTDTPIGWGL 216
I+VG + I WGL
Sbjct: 191 IIVGYS-----IAWGL 201
>gi|412991448|emb|CCO16293.1| predicted protein [Bathycoccus prasinos]
Length = 388
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGR-QLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
+ R+ SAF HG HL NM + I G LE G F LV T+ ++LL
Sbjct: 65 QFYRIFTSAFTHGSFFHLLVNMCAFIQIGAYGLEMKLGSVNFALLVFLFTILCGTTHVLL 124
Query: 125 AYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI- 183
A ++Y+ + + CA+GFS V+F++ + T + + + V Y F LI
Sbjct: 125 ASGMWYLLGMSGYQNECAVGFSGVIFSLVVLDTAFSNIRQRDVFGLFVVNAYMYPFALIA 184
Query: 184 IIYLLVPNASFKGHLSGILVGLTY 207
I+ LL PN+SF GHLSG++VG Y
Sbjct: 185 IVQLLAPNSSFLGHLSGVVVGSLY 208
>gi|42572467|ref|NP_974329.1| rhomboid-like protein 14 [Arabidopsis thaliana]
gi|332642457|gb|AEE75978.1| rhomboid-like protein 14 [Arabidopsis thaliana]
Length = 239
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 87 MVSLILKGRQLEKIYGWGKFLSLVIFLTVFT-SLYYILLAYIVFYITNDTSELSHCAIGF 145
M+SL+ KG +LE G +F S+V L + + +L ++ D + + A+GF
Sbjct: 1 MMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYAVGF 60
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
S VLFAMK +L Q + Y + I V YA W ELI++ + VPNASF GHL GIL G+
Sbjct: 61 SGVLFAMKVVLNS-QAEDYSSVYGILVPTKYAAWAELILVQMFVPNASFLGHLGGILAGI 119
Query: 206 TY 207
Y
Sbjct: 120 IY 121
>gi|303281010|ref|XP_003059797.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458452|gb|EEH55749.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 153
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 27 PPATLGLVFLQSMVYLNIF-RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
PP TLG++ L S ++ I + +S D C++ AVI+ ++ RL+ + + D+MHL Y
Sbjct: 16 PPVTLGVMALSSALHFGILGDRTFSASDACLNPRAVIELGEWHRLVTAPLFYADEMHLVY 75
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI--VFYITNDTSELSHCAI 143
N+ S++ KG QLE G F L++FL V + +A++ + + + + C
Sbjct: 76 NLSSMLWKGVQLETRMGSEAFAKLLVFLLVSVNAAACAVAWVTRAHFASVEEAYYRSCVT 135
Query: 144 GFSAVLFAMKTIL 156
G + VLFA+K+++
Sbjct: 136 GSAGVLFALKSVI 148
>gi|440800861|gb|ELR21891.1| peptidase, S54 (rhomboid) subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 342
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 6/184 (3%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
VCI VI+Q RL+ + F H +H+ NM++ LE+ G F LV+
Sbjct: 46 FSVCIFPPNVIEQFQVYRLLTAGFFHVGFLHVVMNMLAFQALAPSLERAMGSFTFSYLVV 105
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-I 170
V +SL L+ +++ + C IG S+VLF+ + + L + +
Sbjct: 106 LFQVVSSLMNTFLSLVLYKTGAYPDAWNQCTIGLSSVLFSFLVLRSHLHQSHNMSLFGFV 165
Query: 171 NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGE 230
+V A + PW L++ L+P SF GHL+GILV + WG + E IN
Sbjct: 166 SVPAQWYPWVLLVLFQFLMPEVSFLGHLTGILVAYLHV-----WGKLELFKLPSETINKI 220
Query: 231 EQED 234
E
Sbjct: 221 ESSS 224
>gi|326524840|dbj|BAK04356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 333
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWST-------LDVCISADAVIQQRDYKRLILSAFEHGD 79
PP T L+ ++VYL +P + V + +I+ D +R LSAF H
Sbjct: 36 PPVTAALIAANALVYL----RPGAVDAHLPRLRHVMFNPHLIIKFSDLRRFFLSAFYHLS 91
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS 139
+ H + NM SL+ G +LE G +F S+V+ L + + +LL+ + + ND +
Sbjct: 92 EGHFFMNMASLLHTGVKLETSMGSPEFASMVVSLLGLSQGFTLLLSKGLLLLGNDMAYYQ 151
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
+ A GFS VL M +L + + Q ++V + YA EL++I+ P A ++
Sbjct: 152 YSA-GFSGVLLGMNVVLNAREGNVVWQ--GVSVPSKYAALLELLVIHAFNPEAHLVCNVG 208
Query: 200 GILVGLTY 207
GIL GL Y
Sbjct: 209 GILAGLAY 216
>gi|307109842|gb|EFN58079.1| hypothetical protein CHLNCDRAFT_142374 [Chlorella variabilis]
Length = 727
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT L L ++ Y I + DV +S D V+ R+ R S H D +HL +N+
Sbjct: 458 PATSALALLLTVAYALIQWRHLGYPDVGLSYDRVVVHRELWRTAASQLAHIDLVHLAFNL 517
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSA 147
+L G +E+ G +L L + + IL+ +++ + A+G+S
Sbjct: 518 SALWSIG-LVERTLGTLHYLQHTALLFLLSPAICILIYHLLIVVGQREQYREVTAVGYSC 576
Query: 148 VLFAMKTILTRLQPDAYQQILNINVKAI---YAPWFELIIIYLLVPNASFKGHLSGILVG 204
VLF +++ +P + + +I PW L+I LL+P ASF GHL+G+L G
Sbjct: 577 VLFGWMSLMATSKPGGITMLPVFGLASIPLWATPWASLLITSLLIPRASFVGHLAGMLAG 636
Query: 205 LTYTDTPIGW 214
W
Sbjct: 637 YAVALGAFSW 646
>gi|357126318|ref|XP_003564835.1| PREDICTED: rhomboid protein 2-like [Brachypodium distachyon]
Length = 273
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 102/194 (52%), Gaps = 11/194 (5%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ ++ + S+++ I ++ DV +S +A ++ Y R+I SAF H +HL +NM
Sbjct: 13 PASSSVIGVCSLIWFLIQKRNIGYADVGLSYEAALEGGQYWRIITSAFSHISVVHLVFNM 72
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----CAI 143
+L G +E++ G + + T+ + LL ++++ ++ + A+
Sbjct: 73 SALWSLG-AVEQLGQLGLGVEYYLHYTLVLVVLSGLLVLGIYHVMIQKFKVEYFRRVTAV 131
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
G+S V+F TIL QP + + + ++ +AP+ LI ++VP ASF GHLSGI+
Sbjct: 132 GYSCVVFGWMTILAAKQPSSKLNLFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSGII 191
Query: 203 VGLTYTDTPIGWGL 216
VG + I WGL
Sbjct: 192 VGYS-----IAWGL 200
>gi|405975233|gb|EKC39814.1| Serine/threonine-protein kinase RIO2 [Crassostrea gigas]
Length = 670
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 131 ITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLV 189
I +D S CA+GFS V+FA+K ++T P Q ++ I V + Y W EL+ I ++
Sbjct: 494 IMDDGSYRLTCAVGFSGVIFALKVLVTHYSPSGTQYLMGFIPVPSKYIFWAELVFIQMIT 553
Query: 190 PNASFKGHLSGILVGLTYTDTPIGWGLD 217
PN SF GHL+GILVGL YT P+ +D
Sbjct: 554 PNVSFVGHLAGILVGLLYTKGPLKAFMD 581
>gi|149016258|gb|EDL75504.1| hypothetical LOC316557, isoform CRA_a [Rattus norvegicus]
gi|149016260|gb|EDL75506.1| hypothetical LOC316557, isoform CRA_a [Rattus norvegicus]
Length = 187
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
+CA+GFS VLFA+K + P + IL V +A W EL I+ P SF GHL+
Sbjct: 9 NCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELAAIHFCTPGTSFAGHLA 68
Query: 200 GILVGLTYTDTPIGWGLDYVVDKC 223
GILVGL YT P L ++D C
Sbjct: 69 GILVGLMYTQGP----LKKIMDAC 88
>gi|222619672|gb|EEE55804.1| hypothetical protein OsJ_04394 [Oryza sativa Japonica Group]
Length = 362
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 23/200 (11%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ ++ + S+++ I ++ DV +S +A ++ Y R+I SAF H +HL +NM
Sbjct: 13 PASSSVIGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAFSHISVVHLVFNM 72
Query: 88 VSLILKG--RQLEKIYGWG-------KFLSLVIFLTVFTSLYYILL-AYIVFYITNDTSE 137
+L G QL +I G G + +V+ + Y++++ + V Y T
Sbjct: 73 SALWSLGVVEQLGQI-GLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKFKVEYFRRVT-- 129
Query: 138 LSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKG 196
A+G+S V+F TIL QP + I + ++ +AP+ LI ++VP ASF G
Sbjct: 130 ----AVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQASFIG 185
Query: 197 HLSGILVGLTYTDTPIGWGL 216
HLSGI+VG + I WGL
Sbjct: 186 HLSGIIVGYS-----IAWGL 200
>gi|15231701|ref|NP_191511.1| RHOMBOID-like protein 13 [Arabidopsis thaliana]
gi|6996288|emb|CAB75449.1| putative protein [Arabidopsis thaliana]
gi|332646414|gb|AEE79935.1| RHOMBOID-like protein 13 [Arabidopsis thaliana]
Length = 269
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 22/199 (11%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT +V L S+++ I +K V +S + I+ Y R+I SA H +HL +NM
Sbjct: 13 PATSCIVTLCSVIWFVIQKKSIGYSQVGLSYETAIEGH-YWRMITSALSHISVLHLVFNM 71
Query: 88 VSLILKG--RQLEKI-YGWGKFLSLVIFLTVFTS-----LYYILLA-YIVFYITNDTSEL 138
+L G QL + G +L + L VF+ +Y++L+A + + Y T
Sbjct: 72 SALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFKIDYFRRVT--- 128
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G+S V+F TIL+ QP + + + ++ +AP+ LI ++VP ASF GH
Sbjct: 129 ---AVGYSCVVFGWMTILSVKQPSSKLNLFGLLSLPISFAPFESLIFTSIIVPQASFLGH 185
Query: 198 LSGILVGLTYTDTPIGWGL 216
LSGILVG I WGL
Sbjct: 186 LSGILVGYA-----ISWGL 199
>gi|219363065|ref|NP_001136563.1| putative Rhomboid family protein [Zea mays]
gi|194696188|gb|ACF82178.1| unknown [Zea mays]
gi|195635987|gb|ACG37462.1| rhomboid family protein [Zea mays]
gi|413951669|gb|AFW84318.1| putative Rhomboid family protein [Zea mays]
Length = 275
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 15/196 (7%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ ++ + S+++ I ++ DV +S +A + Y R+I SAF H +HL +NM
Sbjct: 13 PASSSVIGICSLIWWLIQKRGIGYADVGLSYEAAVDSGQYWRVITSAFSHVSVVHLVFNM 72
Query: 88 VSLILKG--RQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----C 141
+L G QL +I G + + T+ + LL +++ ++ +
Sbjct: 73 SALWSLGAVEQLGQI---GLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQRFKVEYFRRVT 129
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
A+G+S V+F TIL QP + I + ++ +AP+ LI ++VP ASF GHLSG
Sbjct: 130 AVGYSCVVFGWMTILAAKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSG 189
Query: 201 ILVGLTYTDTPIGWGL 216
I+VG + I WGL
Sbjct: 190 IIVGYS-----IAWGL 200
>gi|149016259|gb|EDL75505.1| hypothetical LOC316557, isoform CRA_b [Rattus norvegicus]
gi|149016261|gb|EDL75507.1| hypothetical LOC316557, isoform CRA_b [Rattus norvegicus]
Length = 168
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
+CA+GFS VLFA+K + P + IL V +A W EL I+ P SF GHL+
Sbjct: 9 NCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAELAAIHFCTPGTSFAGHLA 68
Query: 200 GILVGLTYTDTPIGWGLDYVVDKC 223
GILVGL YT P L ++D C
Sbjct: 69 GILVGLMYTQGP----LKKIMDAC 88
>gi|125528698|gb|EAY76812.1| hypothetical protein OsI_04771 [Oryza sativa Indica Group]
Length = 273
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ ++ + S+++ I ++ DV +S +A ++ Y R+I SAF H +HL +NM
Sbjct: 13 PASSSVIGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAFSHISVVHLVFNM 72
Query: 88 VSLILKG--RQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----C 141
+L G QL +I G + + T+ + LL +++ ++ +
Sbjct: 73 SALWSLGVVEQLGQI---GLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKFKVEYFRRVT 129
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
A+G+S V+F TIL QP + I + ++ +AP+ LI ++VP ASF GHLSG
Sbjct: 130 AVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSG 189
Query: 201 ILVGLTYTDTPIGWGL 216
I+VG + I WGL
Sbjct: 190 IIVGYS-----IAWGL 200
>gi|115441593|ref|NP_001045076.1| Os01g0895500 [Oryza sativa Japonica Group]
gi|57899816|dbj|BAD87561.1| unknown protein [Oryza sativa Japonica Group]
gi|113534607|dbj|BAF06990.1| Os01g0895500 [Oryza sativa Japonica Group]
gi|215686553|dbj|BAG88806.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 273
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 15/196 (7%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ ++ + S+++ I ++ DV +S +A ++ Y R+I SAF H +HL +NM
Sbjct: 13 PASSSVIGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAFSHISVVHLVFNM 72
Query: 88 VSLILKG--RQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----C 141
+L G QL +I G + + T+ + LL +++ ++ +
Sbjct: 73 SALWSLGVVEQLGQI---GLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKFKVEYFRRVT 129
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
A+G+S V+F TIL QP + I + ++ +AP+ LI ++VP ASF GHLSG
Sbjct: 130 AVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSG 189
Query: 201 ILVGLTYTDTPIGWGL 216
I+VG + I WGL
Sbjct: 190 IIVGYS-----IAWGL 200
>gi|412988172|emb|CCO17508.1| predicted protein [Bathycoccus prasinos]
Length = 329
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 4/157 (2%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWG--KFLSLV 110
C S V++ + +R + S+F HGD++HL YN+ SL+ KG +LE+ YG KF+ L
Sbjct: 68 SACFSPAKVLRDFELQRTLFSSFVHGDELHLAYNLSSLLTKGIKLEERYGGKAEKFVLLF 127
Query: 111 IFLTVFTSLYYILLAYIVFYITNDTSELSHCAI-GFSAVLFAMKTILTRLQPDAYQQILN 169
++V T + ++A +F+ ++ + A G S VLFA++TI+ P
Sbjct: 128 CLVSVLTHGFAAIIAGGLFHSGLFDGDVYYNATYGSSGVLFALQTIVLGENPRGNYSFFG 187
Query: 170 INVKAIYAPWFELIIIYLLVPNA-SFKGHLSGILVGL 205
+ V A E+ ++YL+ P+ + H+SGIL G+
Sbjct: 188 LQVPAHRLALTEVGLLYLMNPSTLNLIVHVSGILAGM 224
>gi|297817250|ref|XP_002876508.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297322346|gb|EFH52767.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 269
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 22/199 (11%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT +V + S+++ I +K V +S + I+ Y R+I SA H +HL +NM
Sbjct: 13 PATSCIVTICSVIWFVIQKKSIGYSQVGLSYETAIEGH-YWRMITSALSHISVLHLVFNM 71
Query: 88 VSLILKG--RQLEKI-YGWGKFLSLVIFLTVFTS-----LYYILLA-YIVFYITNDTSEL 138
+L G QL + G +L + L VF+ +Y++L+A + + Y T
Sbjct: 72 SALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFKIDYFRRVT--- 128
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G+S V+F TIL+ QP + + + ++ +AP+ LI ++VP ASF GH
Sbjct: 129 ---AVGYSCVVFGWMTILSMKQPSSKLDLFGLLSLPISFAPFESLIFTSIIVPQASFLGH 185
Query: 198 LSGILVGLTYTDTPIGWGL 216
LSGILVG I WGL
Sbjct: 186 LSGILVGYA-----ISWGL 199
>gi|255080834|ref|XP_002503990.1| predicted protein [Micromonas sp. RCC299]
gi|226519257|gb|ACO65248.1| predicted protein [Micromonas sp. RCC299]
Length = 183
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 7/183 (3%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P T ++ L S V+ + K +V +S V++ R+Y R + ++F H +HL +NM
Sbjct: 1 PITSLVIALCSGVWYFLNSKGLGYEEVGVSYAKVVRDREYWRCLTASFSHISPLHLLFNM 60
Query: 88 VSLILKG-----RQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
SL G R + +G G ++ + + V T IL +++ + ++ E A
Sbjct: 61 SSLWSLGVVEQMRGRGEGWGSGWYVRYTLVMLVGTMALVILSYHVLVRMGHERYE-RVTA 119
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGI 201
+G+S V+F T+L+ QP + +L I + AP+ LI ++VP ASF GHL+GI
Sbjct: 120 VGYSCVVFGWMTVLSVRQPTSSLSLLGYIQLPVNLAPFGSLIFTSVVVPQASFVGHLAGI 179
Query: 202 LVG 204
+VG
Sbjct: 180 VVG 182
>gi|159470379|ref|XP_001693337.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277595|gb|EDP03363.1| predicted protein [Chlamydomonas reinhardtii]
Length = 249
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 70/135 (51%), Gaps = 13/135 (9%)
Query: 80 DMHLYYNMVSLILKGRQLEKIYG-WGKFLSLVIFLTVFTSLYYILLAYIVF------YIT 132
+ HL+YNM SL+ KG QLE YG WG + L + L +L A + Y+
Sbjct: 72 EHHLFYNMGSLLWKGAQLESRYGHWGFAALVAELLLLSHGLTALLAAALAAGFPGYRYLY 131
Query: 133 NDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNA 192
DT CA+GFSAVLFA+K +L QP I+ + Y W EL++ L P A
Sbjct: 132 WDT-----CAVGFSAVLFALKVVLNYNQPGN-SSIMGFELPTKYLCWAELVLASYLTPQA 185
Query: 193 SFKGHLSGILVGLTY 207
F GHL GIL GL +
Sbjct: 186 CFIGHLGGILAGLGH 200
>gi|242059531|ref|XP_002458911.1| hypothetical protein SORBIDRAFT_03g042510 [Sorghum bicolor]
gi|241930886|gb|EES04031.1| hypothetical protein SORBIDRAFT_03g042510 [Sorghum bicolor]
Length = 273
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 15/196 (7%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ ++ + S+++ I ++ DV +S +A + Y R+I SAF H +HL +NM
Sbjct: 13 PASSSVIGICSLIWWLIQKRGIGYADVGLSYEAAVDGGQYWRIITSAFSHISVVHLVFNM 72
Query: 88 VSLILKG--RQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----C 141
+L G QL +I G + + T+ + LL +++ ++ +
Sbjct: 73 SALWSLGVVEQLGQI---GLGVEYYLHYTLVLVVLSGLLVLGFYHMMIQRFKVEYFRRVT 129
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
A+G+S V+F TIL QP + I + ++ +AP+ LI ++VP ASF GHLSG
Sbjct: 130 AVGYSCVVFGWMTILAAKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSG 189
Query: 201 ILVGLTYTDTPIGWGL 216
I+VG + I WGL
Sbjct: 190 IIVGYS-----IAWGL 200
>gi|384252274|gb|EIE25750.1| rhomboid-domain-containing protein, partial [Coccomyxa
subellipsoidea C-169]
Length = 286
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
VC++ ++++ RL SAF H +H+ +NM++ + LE+ G + L L++ L
Sbjct: 48 VCLNPHILVERFQVFRLFTSAFFHAGLLHIGFNMLAFVPVAMSLERQLGSLQTLHLLLML 107
Query: 114 TVFTSLYYILLAYIVFYITNDT-SELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-N 171
+ ++YI +Y+ ++ D S L+ CAIG S +F + + + I +
Sbjct: 108 ILVGDIFYISASYLASFVLADARSYLASCAIGLSGAIFGLIVVDNACSGAQTRSIFGMFT 167
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
V A + PW L+ LL+P SF GHL G+L G Y
Sbjct: 168 VSAKWYPWALLVFWQLLMPGVSFLGHLGGVLAGQAY 203
>gi|168005315|ref|XP_001755356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693484|gb|EDQ79836.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 272
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 11/194 (5%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ ++ + S +L I ++ DV +S ++VI Q Y R I SAF H +HL +NM
Sbjct: 13 PASTCVIAICSATWLYIQQRNVGYSDVGLSYESVISQGQYWRFITSAFSHISFLHLVFNM 72
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----CAI 143
+L G +E + + I T L L+ ++++ ++L + A+
Sbjct: 73 SALWSLG-VVESFNDYNLGTAYYIQYTTILVLLSGLMVLGMYHVLITRAKLEYYRRVTAV 131
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
G+S V+F TIL QP + +++ AP+ LI ++VP ASF GHL+GIL
Sbjct: 132 GYSCVVFGWMTILAVRQPSLKLNLFGLLSLPISLAPFESLIFTSIIVPQASFLGHLAGIL 191
Query: 203 VGLTYTDTPIGWGL 216
VG IGWG+
Sbjct: 192 VGYL-----IGWGV 200
>gi|452822090|gb|EME29113.1| hypothetical protein isoform 1 [Galdieria sulphuraria]
Length = 195
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P T ++ + +V+L I K WS DV + D VI ++ R I S H MHL NM
Sbjct: 19 PVTCLVIAICIIVWLVITYKGWSYYDVGCNYDCVIVDKETWRWISSTLSHISLMHLILNM 78
Query: 88 VSLILKGRQLEKIYGWGKFLS---LVIFLTVFTSLYYILLAYIVFYITNDTSELSHC-AI 143
SL +E+ G +L+ ++ FL+ +L+ L VF+ + ++ H +
Sbjct: 79 YSL-WNLSWMEQRLGSLVYLTWNVVIAFLSTCVTLFINYLQLTVFH----SEQVRHVYLV 133
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
G+SAVLF + I ++ A IL+ + + I+ P+ L ++ LLVP ASF GH SGIL
Sbjct: 134 GYSAVLFGLFVIASQHIKVARIWILDEVLISPIWIPFISLGVVTLLVPEASFVGHCSGIL 193
Query: 203 VG 204
+G
Sbjct: 194 IG 195
>gi|242057069|ref|XP_002457680.1| hypothetical protein SORBIDRAFT_03g011560 [Sorghum bicolor]
gi|241929655|gb|EES02800.1| hypothetical protein SORBIDRAFT_03g011560 [Sorghum bicolor]
Length = 342
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
V ++ + + RD+K LS + H +++HL+ NM +L+ G +LE S+
Sbjct: 51 VALNPNMFFKFRDWKTFFLSPWCHTNEVHLFSNMTTLLWTGVELET--------SMGTAW 102
Query: 114 TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN-- 171
V +L + + N IGFS VLF +K + L++
Sbjct: 103 PVTGCAILLLSKGCLSLVGNGAPYYDEFCIGFSGVLFGIKAVSMSAHAAESGDFLHLAGM 162
Query: 172 --VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
+ A YA W EL+++ L+PN SF GHL GIL G Y
Sbjct: 163 VVIPAKYAVWAELLLVQALMPNTSFVGHLGGILAGHVY 200
>gi|302785620|ref|XP_002974581.1| hypothetical protein SELMODRAFT_101862 [Selaginella moellendorffii]
gi|300157476|gb|EFJ24101.1| hypothetical protein SELMODRAFT_101862 [Selaginella moellendorffii]
Length = 272
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ L+ L S V+L I + +V +S + V+ Q Y R++ S+F H +HL +NM
Sbjct: 13 PASSCLIALCSAVWLYIQHRSIGYAEVGMSYETVVLQGQYWRILTSSFSHISFLHLVFNM 72
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLT---------VFTSLYYILLAYIVFYITNDTSEL 138
+L G +E + G G ++ + T + +Y++L+ + S
Sbjct: 73 SALWSLG-MVEGLKGIGLGVTFYVHYTLLLVLLSAALVLGIYHLLIHRFNLELYKRVS-- 129
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G+S V+F TIL QP + ++ +++ +AP+ L+ ++VP ASF GH
Sbjct: 130 ---AVGYSCVVFGWMTILASKQPSSKLELFGLLSLPINFAPFESLVFTSIIVPKASFLGH 186
Query: 198 LSGILVGLTYTDTPIGWG 215
L+GI+VG I WG
Sbjct: 187 LAGIIVGYL-----IAWG 199
>gi|395533706|ref|XP_003768895.1| PREDICTED: uncharacterized protein LOC100925524 [Sarcophilus
harrisii]
Length = 305
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 9/143 (6%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
L+L+ H + HL N+V L L GR+LE G G L L+ +FT ++ L +
Sbjct: 161 LLLAPVHHENPWHLACNVVGLWLTGRRLELSVGTGLLLVLMTSAALFTGFLHLALNLAME 220
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
++S + CA+GFS VLFAM+ + + + L N+ A E ++
Sbjct: 221 VTLQESSYRADCALGFSGVLFAMQVM------SSSENSLVGNLLLCLA---ESLVASYFA 271
Query: 190 PNASFKGHLSGILVGLTYTDTPI 212
P SF GHL+G+LVGL Y P+
Sbjct: 272 PKVSFSGHLTGVLVGLAYRWGPM 294
>gi|302759717|ref|XP_002963281.1| hypothetical protein SELMODRAFT_79372 [Selaginella moellendorffii]
gi|300168549|gb|EFJ35152.1| hypothetical protein SELMODRAFT_79372 [Selaginella moellendorffii]
Length = 272
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 11/193 (5%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PA+ L+ L S V+L I + +V +S + V+ Q Y R++ S+F H +HL +NM
Sbjct: 13 PASSCLIALCSAVWLYIQHRSIGYAEVGMSYETVVLQGQYWRILTSSFSHISFLHLVFNM 72
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----CAI 143
+L G +E + G G ++ + T+ L L +++ L A+
Sbjct: 73 SALWSLG-MVEGLKGIGLGITFYVHYTLLLVLLSAALVLGIYHFLVHRFNLELYKRVSAV 131
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
G+S V+F TIL QP + ++ +++ +AP+ L+ ++VP ASF GHL+GI+
Sbjct: 132 GYSCVVFGWMTILASKQPSSKLELFGLLSLPINFAPFESLVFTSIIVPKASFLGHLAGII 191
Query: 203 VGLTYTDTPIGWG 215
VG I WG
Sbjct: 192 VGYL-----IAWG 199
>gi|388521227|gb|AFK48675.1| unknown [Lotus japonicus]
Length = 271
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT L+ + S+++ I +K V +S + I+ + + R+I SAF H +HL +NM
Sbjct: 13 PATSVLIGICSVIWFYIQKKNIGYSHVGLSYETAIEGQHW-RIITSAFSHISVIHLVFNM 71
Query: 88 VSLILKG--RQLEKI-YGWGKFLSLVIFLTVFT-----SLYYILLA-YIVFYITNDTSEL 138
+L G QL+ + G +L + L + + ++Y++L+ + + Y T
Sbjct: 72 SALWSLGVVEQLDHLGLGVEYYLQYTLVLVILSGVLVLAMYHLLIQRFKIEYFRRVT--- 128
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GH
Sbjct: 129 ---AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGH 185
Query: 198 LSGILVGLTYTDTPIGWGL 216
LSGI+VG T I WGL
Sbjct: 186 LSGIVVGYT-----IAWGL 199
>gi|154421477|ref|XP_001583752.1| Clan S-, family S54, Rhomboid-like serine peptidase [Trichomonas
vaginalis G3]
gi|121917995|gb|EAY22766.1| Clan S-, family S54, Rhomboid-like serine peptidase [Trichomonas
vaginalis G3]
Length = 289
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 21/204 (10%)
Query: 12 ILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLI 71
+L+ + +LH+ T+ P +F+Q + YLN F VI+Q +Y R+
Sbjct: 15 LLIFMILLHIAKITLMPP----LFMQKL-YLNPFL--------------VIKQNEYWRIF 55
Query: 72 LSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYI 131
S + H D +HL NM++ G E+ G F + V ++L L+A+ + +
Sbjct: 56 TSQYVHADIIHLAMNMMTFYQLGNFFERSVGTIAFFYYIFIFGVLSNLLDCLIAWFMAW- 114
Query: 132 TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN-VKAIYAPWFELIIIYLLVP 190
A+GFS VLF++ I + + P + + ++ + V + PW L+ + +++P
Sbjct: 115 GGRPEHFIGSAVGFSGVLFSLTVIDSAVSPGSQRSVMGLFLVPKDFYPWALLLFMSIIIP 174
Query: 191 NASFKGHLSGILVGLTYTDTPIGW 214
+AS GH +G+++G Y + W
Sbjct: 175 SASLLGHATGMVMGYLYIFGLLKW 198
>gi|307107576|gb|EFN55818.1| hypothetical protein CHLNCDRAFT_145331 [Chlorella variabilis]
Length = 361
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 18/200 (9%)
Query: 29 ATLGLVFLQSMVYLNIFRKP--WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYN 86
AT+GLV Q+ +++ +P + L V ++ V+ +Y+RL+ H D HL N
Sbjct: 96 ATVGLVAAQAALHM----RPGGYRLLQVGLNTHRVLHHGEYRRLLTGVMLHADMTHLVSN 151
Query: 87 MVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS----HCA 142
S++L+G LE+ G FL+LV ++ + Y+L + ++S +
Sbjct: 152 CTSVVLEGLPLERRLGSPAFLALVASTSLTSQGLYLLSTRLAVRFLPNSSLANDYYLSFV 211
Query: 143 IGFSAVLFAMKTILTRLQPD--AYQQILN----INVKAIYAPWFELIIIYLLVPNASFKG 196
+GFS + A++ + ++ A Q+ + A W L++ + L PNAS G
Sbjct: 212 VGFSGIALALRVVGGYMREADLAAAQVAPSEEFVLTAGRLAAWPSLLMSHALFPNASLTG 271
Query: 197 HLSGILVGL--TYTDTPIGW 214
HL GI G+ Y +GW
Sbjct: 272 HLCGIATGVLHVYAARVVGW 291
>gi|21952847|dbj|BAC06262.1| P0696G06.19 [Oryza sativa Japonica Group]
Length = 685
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 15/190 (7%)
Query: 34 VFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILK 93
V + S+++ I ++ DV +S +A ++ Y R+I SAF H +HL +NM +L
Sbjct: 431 VGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAFSHISVVHLVFNMSALWSL 490
Query: 94 G--RQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----CAIGFSA 147
G QL +I G + + T+ + LL +++ ++ + A+G+S
Sbjct: 491 GVVEQLGQI---GLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKFKVEYFRRVTAVGYSC 547
Query: 148 VLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
V+F TIL QP + I + ++ +AP+ LI ++VP ASF GHLSGI+VG +
Sbjct: 548 VVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSGIIVGYS 607
Query: 207 YTDTPIGWGL 216
I WGL
Sbjct: 608 -----IAWGL 612
>gi|384251613|gb|EIE25090.1| rhomboid-domain-containing protein, partial [Coccomyxa
subellipsoidea C-169]
Length = 260
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 7/193 (3%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT + L + VYL I DV ++ D +Q+ + R++ + H + +HL +N+
Sbjct: 9 PATSLVSTLLTAVYLYITSHGIGYADVGLNYDQAVQKLELWRVLTAQVSHVELLHLLFNL 68
Query: 88 VSLILKGRQLEKIYGWGK------FLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC 141
+L G +E+ G G +L + L +F+ L +L +++ + +
Sbjct: 69 STLWSLG-VIEESNGNGAKGGTRYYLQTSLVLLIFSGLVCLLFYHVLGVVLRREQYHTVT 127
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGI 201
+G+SAV+F TIL+R ++ N+ P+ L++ +++P ASF GHLSGI
Sbjct: 128 TVGYSAVIFGWMTILSRTGVASFSVFGLANIPMWLTPFASLVLTSIIIPRASFLGHLSGI 187
Query: 202 LVGLTYTDTPIGW 214
+VG W
Sbjct: 188 VVGFMVASGVFDW 200
>gi|224095662|ref|XP_002310428.1| predicted protein [Populus trichocarpa]
gi|222853331|gb|EEE90878.1| predicted protein [Populus trichocarpa]
Length = 269
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 22/199 (11%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT ++ + S ++ I ++ + V +S + I+ + R+I SAF H +HL +NM
Sbjct: 13 PATSCIIGICSAIWFYIQKRNFGYSHVGLSYENAIEGHHW-RIITSAFSHISVIHLVFNM 71
Query: 88 VSLILKG--RQLEKI-YGWGKFLSLVIFLTVFTS-----LYYILLA-YIVFYITNDTSEL 138
+L G QL I G +L + L V + +Y++L+ + + Y + T
Sbjct: 72 SALWSLGVVEQLGHIGLGVAYYLHHTLVLVVLSGALVLGMYHLLIQRFKIEYFRSVT--- 128
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GH
Sbjct: 129 ---AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGH 185
Query: 198 LSGILVGLTYTDTPIGWGL 216
LSGI+VG I WGL
Sbjct: 186 LSGIVVGYA-----IAWGL 199
>gi|219112025|ref|XP_002177764.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410649|gb|EEC50578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 304
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 6/182 (3%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWSTLDVCI---SADAVIQQRDYKRLILSAFEHGDDMHL 83
P T G++ L V L++ K L++ I VI + + R+ SA HG+ MHL
Sbjct: 12 PQTTTGIIAL--CVILHVVTKVLLDLNLRIFTLCPQLVIYRLEIYRIATSALFHGNIMHL 69
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI 143
NM++ + G LEK +G + L ++++ + T + YI +A + I + ++
Sbjct: 70 AMNMMTTLAIGSLLEKRFGTFRLLLIILWSILLTGILYIGIALFLAIIIQKNQLMRQHSV 129
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
GFS V+F + + + L + + +V + PW L+ + + +P SF GHL GIL
Sbjct: 130 GFSGVIFHLSVLESNLGTHQSRSVFGFFDVPSYLYPWVLLVGLQIFMPGLSFTGHLVGIL 189
Query: 203 VG 204
VG
Sbjct: 190 VG 191
>gi|302843800|ref|XP_002953441.1| hypothetical protein VOLCADRAFT_94253 [Volvox carteri f.
nagariensis]
gi|300261200|gb|EFJ45414.1| hypothetical protein VOLCADRAFT_94253 [Volvox carteri f.
nagariensis]
Length = 412
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 6/184 (3%)
Query: 26 IPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
+PP TL LV YLN P +VC+S VI + + RL ++ H D HL
Sbjct: 117 LPPVTLALVAASVWRYLN----PVLLREVCLSPYCVIDRNEVGRLWTASLTHLDLPHLMS 172
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE-LSHCAIG 144
N+ SL+ LE+ G F++ V L+ +S ++ A + + T + A+G
Sbjct: 173 NLASLLPDAAVLERQEGSALFIADVALLSTLSSGLFVGWAVLEKQVLQRTGTYYAVGAVG 232
Query: 145 FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL-VPNASFKGHLSGILV 203
S++ FA++ + + ++ L + + ++ L +L+ P+ SF GH+ G+L
Sbjct: 233 LSSLAFALQVVADETRAGGERRCLGLPLPGRFSWVLSLGFTHLVSAPDTSFAGHMCGVLA 292
Query: 204 GLTY 207
G+ +
Sbjct: 293 GIAH 296
>gi|361067743|gb|AEW08183.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
Length = 159
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 97 LEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL-SHCAIGFSAVLFAMKTI 155
LE++ G +F S+V L + ++ A ++ + L S CA+GFSAVLFA+K +
Sbjct: 1 LERMMGSTEFASMVAVLLGLSHGIVVVTAKVLATFFDYPYPLTSECAVGFSAVLFALKVV 60
Query: 156 LTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
L D + V A YA W EL++I + VP SF GHLSGI G+ Y
Sbjct: 61 LNSSSSDPTYVYGGVVVPARYAAWAELLLIQMFVPGVSFIGHLSGIFAGILY 112
>gi|299473184|emb|CBN78760.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 317
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 18/152 (11%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+Y R+I A HG MH+ +NM+S + G LE +G LSL +FT L+ ++LA
Sbjct: 53 EYYRVITGALLHGGLMHIVFNMMSFLSIGSSLEVAFG---TLSL-----LFTILWSMILA 104
Query: 126 YIV---------FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAI 175
+V ++T+D + ++ ++GFS V+F + + + + + + V
Sbjct: 105 GVVHCGAEWVMTVWVTHDPTYVNQPSVGFSGVIFTLALMESYRSTQPTRSVFGMMRVPTR 164
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
PW L+++ + + + SF GHLSGILVG+ +
Sbjct: 165 MYPWVLLVLLSVFMRDISFVGHLSGILVGVMH 196
>gi|361067741|gb|AEW08182.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176329|gb|AFG71694.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176331|gb|AFG71695.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176333|gb|AFG71696.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176335|gb|AFG71697.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176337|gb|AFG71698.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176339|gb|AFG71699.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176341|gb|AFG71700.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176343|gb|AFG71701.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176345|gb|AFG71702.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176347|gb|AFG71703.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176349|gb|AFG71704.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176351|gb|AFG71705.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176353|gb|AFG71706.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176355|gb|AFG71707.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176357|gb|AFG71708.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176359|gb|AFG71709.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176361|gb|AFG71710.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
Length = 158
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 97 LEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL-SHCAIGFSAVLFAMKTI 155
LE++ G +F S+V L + ++ A ++ + L S CA+GFSAVLFA+K +
Sbjct: 1 LERMMGSTEFASMVAVLLGLSHGIVVVTAKVLATFFDYPYPLTSECAVGFSAVLFALKVV 60
Query: 156 LTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
L P+ + + V A +A W EL++I + VP SF GHLSGI G+ Y
Sbjct: 61 LNSNSPN-LTNVYGVVVPARHAAWAELLLIQMFVPGVSFLGHLSGIFAGILY 111
>gi|358342534|dbj|GAA49978.1| rhomboid domain-containing protein 1 [Clonorchis sinensis]
Length = 161
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 72 LSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYI 131
+S F H ++ H+Y+N+ I +E + GW L + + L V + + ++ + ++++ +
Sbjct: 1 MSHFCHLNEWHIYHNLTGFIRHAVWVEVLVGWRSALVVFLHLMVRSQILHLFINHLLYIL 60
Query: 132 TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP-----WFELIIIY 186
T D + C IG S ++FA+ +L+ L + N + P W +L +I
Sbjct: 61 TEDEAYSKDCFIGISGLVFAIN-VLSNLSMKGTWEFQLTNGRIFRIPKAAIAWGDLFLIQ 119
Query: 187 LLVPNASFKGHLSGILVGLTYTDT 210
VP +S GHL+G+ GL+Y T
Sbjct: 120 FPVPTSSLVGHLAGVFAGLSYQST 143
>gi|449454580|ref|XP_004145032.1| PREDICTED: rhomboid protein 2-like [Cucumis sativus]
gi|449471895|ref|XP_004153438.1| PREDICTED: rhomboid protein 2-like [Cucumis sativus]
gi|449520980|ref|XP_004167510.1| PREDICTED: LOW QUALITY PROTEIN: rhomboid protein 2-like [Cucumis
sativus]
Length = 271
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT G++ + ++ I +K V +S + ++ + R+I SAF H +HL +NM
Sbjct: 13 PATSGIIGICCAIWFYIQKKNIGYSHVGLSYETAVEGHHW-RIITSAFSHISVIHLVFNM 71
Query: 88 VSLILKG--RQLEKI-YGWGKFLSLVIFLTVFTS-----LYYILL-AYIVFYITNDTSEL 138
+L G QL I G +L + L + + +Y++L+ + + Y T
Sbjct: 72 SALWSLGAVEQLGHIGLGVPYYLHYTLVLVILSGVLVLGMYHLLIQKFKLEYFRRVT--- 128
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GH
Sbjct: 129 ---AVGYSCVVFGWMTILSVRQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGH 185
Query: 198 LSGILVGLTYTDTPIGWGL 216
LSGI+VG I WGL
Sbjct: 186 LSGIIVGYA-----IAWGL 199
>gi|307136259|gb|ADN34087.1| rhomboid protein [Cucumis melo subsp. melo]
Length = 271
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT G++ + ++ I +K V +S + ++ + R+I SAF H +HL +NM
Sbjct: 13 PATSGIIGICCAIWFYIQKKNIGYSHVGLSYETAMEGHHW-RIITSAFSHISVIHLVFNM 71
Query: 88 VSLILKG--RQLEKI-YGWGKFLSLVIFLTVFTS-----LYYILL-AYIVFYITNDTSEL 138
+L G QL I G +L + L + + +Y++L+ + + Y T
Sbjct: 72 SALWSLGAVEQLGHIGLGVPYYLHYTLVLVILSGVLVLGMYHLLIQKFKLEYFRRVT--- 128
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GH
Sbjct: 129 ---AVGYSCVVFGWMTILSVRQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGH 185
Query: 198 LSGILVGLTYTDTPIGWGL 216
LSGI+VG I WGL
Sbjct: 186 LSGIIVGYA-----IAWGL 199
>gi|330801370|ref|XP_003288701.1| hypothetical protein DICPUDRAFT_98105 [Dictyostelium purpureum]
gi|325081264|gb|EGC34786.1| hypothetical protein DICPUDRAFT_98105 [Dictyostelium purpureum]
Length = 382
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 13/195 (6%)
Query: 47 KPWSTLDVCISADAVIQQ--RDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKI-YGW 103
K W VC+S ++ + +I S + H + +H+ +NM++ I G +LEK +G
Sbjct: 60 KAW---QVCLSPYYLLSHPLSNAYTIITSNYFHINILHILFNMLAFIPLGSRLEKSKFGT 116
Query: 104 GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDA 163
+F L++ ++ L +L+ I Y C++GFS ++F++ I D
Sbjct: 117 LQFFYLIVLFSILIPLMTTVLSVIGLYTNITRFGYYSCSVGFSGIVFSLLEI--EFFEDR 174
Query: 164 YQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDK 222
+ I N+ + P+ L I YL+ P++SF GHLSGI VGL + + L ++
Sbjct: 175 LVSLYGITNIPSKLYPFAILFITYLIFPSSSFLGHLSGIFVGLLF----VKGNLSFLFLS 230
Query: 223 CQEMINGEEQEDMGE 237
++ + E E +
Sbjct: 231 PEKYVQIETSEKLNR 245
>gi|170576544|ref|XP_001893672.1| MGC84665 protein [Brugia malayi]
gi|158600200|gb|EDP37503.1| MGC84665 protein, putative [Brugia malayi]
Length = 169
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
+C+ ++ + ++ R++ S H DDMHLY+NM+SL+ KGR+LE G +FL L+
Sbjct: 1 MCLLPSRILYRCEWLRMLASTIMHVDDMHLYFNMISLLWKGRRLEPWLGSNRFLLLLAVF 60
Query: 114 TVFTSLYYILLAYIV--FYITNDTSELSHCAIGFSAVL 149
V TS + L+Y+ + N ++ CAIGFS +
Sbjct: 61 AVATSSTMVGLSYLADEVFSFNGGGYMNQCAIGFSGSI 98
>gi|290999042|ref|XP_002682089.1| rhomboid domain-containing protein [Naegleria gruberi]
gi|284095715|gb|EFC49345.1| rhomboid domain-containing protein [Naegleria gruberi]
Length = 368
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 44 IFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW 103
+F +P S+ D+C I +L F HG H+ +NM++L G ++E G
Sbjct: 102 VFNEPKSS-DICYRYSTTILTTKVWQLFTFPFFHGSITHILFNMLALYQFGNRIESTLGT 160
Query: 104 GKFLSLVIFLTVFTSLYYILLA--YIVFYITNDTSE--LSHCAIGFSAVLFAMKTILTRL 159
F + +F+ +F S ++ + +I + T L C +G+S VLF +
Sbjct: 161 IYFFFISLFMIIFGSAVWVAIDALFIQGFGAGQTLSFLLDRCTVGYSGVLFGYLVFTVQY 220
Query: 160 QPDAYQQILNINVKAIYA---PWFELIIIYLLVPNASFKGHLSGILVG 204
+P Q N PW LI+ LL+PN S GHL+G++ G
Sbjct: 221 RPLFEQLYPGANADDFAPKLIPWLMLIVTSLLMPNVSLMGHLTGMISG 268
>gi|356538887|ref|XP_003537932.1| PREDICTED: rhomboid protein 2-like [Glycine max]
Length = 271
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 12/194 (6%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT ++ + SM++ I +K V +S + ++ + R+I SAF H +HL +NM
Sbjct: 13 PATSCIIGICSMIWFYIQKKNIGYSHVGLSYETALEGHHW-RIITSAFSHISVIHLVFNM 71
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----CAI 143
+L G +E++ G + + T+ + +L ++++ + +L + A+
Sbjct: 72 SALWSLG-VVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIERFKLEYFRRVTAV 130
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GHLSGI+
Sbjct: 131 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIV 190
Query: 203 VGLTYTDTPIGWGL 216
VG I WGL
Sbjct: 191 VGYA-----IAWGL 199
>gi|255634698|gb|ACU17711.1| unknown [Glycine max]
Length = 271
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 12/194 (6%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT ++ + SM++ I +K V +S + ++ + R+I SAF H +HL +NM
Sbjct: 13 PATSCIIGICSMIWFYIQKKNIGYSHVGLSYETALEGHHW-RIITSAFSHISVIHLVFNM 71
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----CAI 143
+L G +E++ G + + T+ + +L ++++ + +L + A+
Sbjct: 72 SALWSLG-VVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIERFKLEYFRRVTAV 130
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GHLSGI+
Sbjct: 131 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIV 190
Query: 203 VGLTYTDTPIGWGL 216
VG I WGL
Sbjct: 191 VGYA-----IAWGL 199
>gi|428173649|gb|EKX42550.1| hypothetical protein GUITHDRAFT_88083, partial [Guillardia theta
CCMP2712]
Length = 241
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 6/194 (3%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT ++ ++ I+R +D+ S V+ ++ + R + ++ H + +HL +NM
Sbjct: 16 PATASVIGTCCTIWYLIWRNRLDYVDLGSSYRFVVIEKQWWRTLSASLSHINLVHLGFNM 75
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSA 147
S + R E+I G ++L + + + ++ + +++ + L+ +GFS
Sbjct: 76 FS-TWQLRHAEQILGSLEYLRFTLVFLLLSVIFQNAIHHVLLRTPSAEYTLNTVGVGFSC 134
Query: 148 VLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
V+FA T ++ L L V +P+ LI L++P F GHLSGI+ G
Sbjct: 135 VVFAWMTWMSLLTSGQSLDFLFFRVPYNMSPFASLIFTQLMIPRVDFIGHLSGIIAGYWQ 194
Query: 208 TDTPIGWGLDYVVD 221
GWGL+ +D
Sbjct: 195 -----GWGLNAWLD 203
>gi|303271301|ref|XP_003055012.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462986|gb|EEH60264.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 231
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
C++ V+ + R + + F HG +HL NM + + LE+ G +F +L++ L
Sbjct: 44 ACVAPRHVLATGEVYRALTAPFFHGSLLHLALNMTAFVGTASGLERSLGTTQF-ALIVLL 102
Query: 114 TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INV 172
+ Y + + T CAIG S ++F + + T L + + +V
Sbjct: 103 FALVAAAYHVALATAAALVGFTGAPMECAIGLSGIIFGLIVVDTHLSAIERRSVFGFFDV 162
Query: 173 KAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
+ + P L+ I ++ P SF GH +G+L GLTY
Sbjct: 163 PSGWYPLGLLLFIQVIAPAVSFLGHAAGLLAGLTY 197
>gi|356545465|ref|XP_003541163.1| PREDICTED: rhomboid protein 2-like [Glycine max]
Length = 271
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 12/194 (6%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT ++ + SM++ I +K V +S + ++ + R+I SAF H +HL +NM
Sbjct: 13 PATSCIIGICSMIWFYIQKKNIGYSHVGLSYETAVEGHHW-RIITSAFSHISVIHLVFNM 71
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----CAI 143
+L G +E++ G + + T+ + +L ++++ +L + A+
Sbjct: 72 SALWSLG-VVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIQRFKLEYFRRVTAV 130
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GHLSGI+
Sbjct: 131 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIV 190
Query: 203 VGLTYTDTPIGWGL 216
VG I WGL
Sbjct: 191 VGYA-----IAWGL 199
>gi|303289455|ref|XP_003064015.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454331|gb|EEH51637.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 319
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSL-------------ILKGRQLEK 99
DV +S AV++++ Y R + ++ H +HL +NM +L ++ +
Sbjct: 38 DVGMSYAAVVREKKYHRCVTASLSHVSVLHLLFNMSTLWSCGVVEAAGGRGVMSDAESAA 97
Query: 100 IYGWGK-FLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-CAIGFSAVLFAMKTILT 157
Y WG + + + L + + +L Y V E A+G+SAV+F TIL+
Sbjct: 98 GYPWGSAWYARLSLLMLLGTCGIVLATYHVLLTRFRREEYERVTAVGYSAVVFGWMTILS 157
Query: 158 RLQPDAYQQILN--INVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+P + ++ +N+ AP+ L ++VP ASF GHL+GI++G
Sbjct: 158 VKRPTSSLVLIGGAVNLPVNLAPFASLAFTSIVVPRASFVGHLAGIVMG 206
>gi|66813132|ref|XP_640745.1| hypothetical protein DDB_G0281359 [Dictyostelium discoideum AX4]
gi|60468764|gb|EAL66765.1| hypothetical protein DDB_G0281359 [Dictyostelium discoideum AX4]
Length = 343
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 18/222 (8%)
Query: 26 IPPATLGLVFLQSMVYLNIFRKP--WSTLDVCISADAVIQQ--RDYKRLILSAFEHGDDM 81
IP AT + + S+++ P + + C+S +++ + R+ILS F H
Sbjct: 36 IPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIY 95
Query: 82 HLYYNMVSLILKGRQLEKI-YGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH 140
H+ YNM++ L +LE++ +G K+ L+ + T+L + +I F N+
Sbjct: 96 HIVYNMITF-LDLAKLERLTFGTLKYFYLLFLFGIITNL---ICLFIYFIGRNNV----- 146
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
C +GFS VLFA+ I + + + + PW LI+ ++ VP +SF GH SG
Sbjct: 147 CHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSG 206
Query: 201 ILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQN 242
I+VG+ + G+ LD + Q++ E + M +N
Sbjct: 207 IVVGILFIK---GY-LDIFILSNQKLSEIESSQLMNIFTTKN 244
>gi|299470170|emb|CBN78198.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 305
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 98/182 (53%), Gaps = 6/182 (3%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT L + V+L ++R+ S + S ++ ++++ R++ +A HG +HL +++
Sbjct: 55 PATCVLSAVLVTVFLAMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHGGLLHLAFSI 114
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSA 147
SL R ++ WG L+ F+ V ++ + +++ E+S C G+S
Sbjct: 115 SSLWSCRRIETELGSWGYLLASAHFV-VLAEVFEKMFMHVLLRTGRVVDEVS-C--GYSG 170
Query: 148 VLFAMKTILTRLQPDAYQQILNINVKAIYAP-WFELIIIYLLVPNASFKGHLSGILVGLT 206
V+FA +L+ L+PDA +++ V + +A L+++ +L+ +SF GHL+G+ GL
Sbjct: 171 VVFAWIVVLS-LRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLL 229
Query: 207 YT 208
++
Sbjct: 230 FS 231
>gi|255577227|ref|XP_002529496.1| Rhomboid protein, putative [Ricinus communis]
gi|223531054|gb|EEF32906.1| Rhomboid protein, putative [Ricinus communis]
Length = 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 12/194 (6%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT ++ + S ++ I +K V +S + I+ + R+I SAF H +HL +NM
Sbjct: 13 PATSCIIGICSAIWFYIQKKNIGYSHVGLSYETAIEGHHW-RIITSAFSHISVLHLVFNM 71
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH----CAI 143
+L G +E++ G ++ + T+ + +L ++ I ++ + A+
Sbjct: 72 SALWSLG-VVEQLGHMGLGIAYYLHYTLVLVVLSGVLVLGMYRILIQRFKVDYFRRVTAV 130
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GHLSGI+
Sbjct: 131 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGII 190
Query: 203 VGLTYTDTPIGWGL 216
VG + I WGL
Sbjct: 191 VGYS-----IAWGL 199
>gi|281204487|gb|EFA78682.1| methionyl-tRNA synthetase beta subunit [Polysphondylium pallidum
PN500]
Length = 400
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
L+ S+ I ++ +L SAF H +H+ +NM S I QL+ + +SL+
Sbjct: 84 LNTLCSSPTNILDLNFSKLA-SAFTHSGILHILFNMSSFI----QLKSLESTNVLVSLMS 138
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN 171
F F L++Y N + L C++G S V+FA+ I + I
Sbjct: 139 FAIAF------LISYPPL---NYMNSLYTCSVGLSGVIFALLEIQCYGSIHSTNLFAQIQ 189
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEE 231
+ PW L++ L+PN SF GHLSGI++G Y IG LD ++ +I E
Sbjct: 190 IPLKLYPWAALLLAQFLMPNVSFIGHLSGIIIGFLYA---IGL-LDALIPSNATLIKIEL 245
Query: 232 QEDMGE 237
+ M +
Sbjct: 246 SDAMSQ 251
>gi|308806321|ref|XP_003080472.1| Rhomboid family proteins (ISS) [Ostreococcus tauri]
gi|116058932|emb|CAL54639.1| Rhomboid family proteins (ISS) [Ostreococcus tauri]
Length = 350
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
+ VC Y R+ S F HG+ H+ +N ++ + G LE+ G F L +
Sbjct: 41 VGVCAVPKIAFHWTAYYRVYTSIFTHGNLPHVIFNALAFVSTGGNLERSVGTFHFAWLFV 100
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI- 170
LA+ +++ T + CA+G S V+FA+ T + + +
Sbjct: 101 TFAHVAYFASAALAWGLYFGLGYTQGILTCAVGMSGVIFALIVCETNYTDVGRRSVFGLF 160
Query: 171 NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
+V + + P L++I L++P SF GH G++ G Y
Sbjct: 161 DVASEWYPLALLVLIQLMIPGVSFLGHAGGVVCGWMY 197
>gi|225433926|ref|XP_002268743.1| PREDICTED: uncharacterized protein LOC100252469 [Vitis vinifera]
gi|147779771|emb|CAN67998.1| hypothetical protein VITISV_001298 [Vitis vinifera]
gi|297743810|emb|CBI36693.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 22/199 (11%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT ++ L ++ I +K V +S + I+ + R+I SA H +HL +NM
Sbjct: 13 PATSCIIGLCCAIWFYIQKKNIGYSHVGLSYETAIEGHHW-RIITSALSHISVIHLVFNM 71
Query: 88 VSLILKG--RQLEKI-YGWGKFLSLVIFLTVFTS-----LYYILLA-YIVFYITNDTSEL 138
+L G QL + G +L + L V + Y++L+ + + Y T
Sbjct: 72 SALWSLGVVEQLGHMGMGVEFYLQYTLVLVVLSGGLVLGSYHVLIQRFKLEYFRRVT--- 128
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G+S V+F TIL+ QP + ++ +++ +AP+ LI ++VP ASF GH
Sbjct: 129 ---AVGYSCVVFGWMTILSVKQPSSKLELFGFLSLPISFAPFESLIFTSIIVPQASFLGH 185
Query: 198 LSGILVGLTYTDTPIGWGL 216
LSGI+VG I WG+
Sbjct: 186 LSGIIVGYA-----IAWGV 199
>gi|452824142|gb|EME31147.1| rhomboid domain-containing protein 1 [Galdieria sulphuraria]
Length = 337
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 55 CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG--------WGKF 106
C+S + V L ++ H HL +N+++L+ G +E G
Sbjct: 47 CVSLEQVFFSYRVYLLFIAPLLHSSFWHLLFNVIALLGIGPVVESRKGSTLYGLLCLLLL 106
Query: 107 LSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTI-LTRLQPDAYQ 165
L +F L Y+ Y+ F+ + + C +GFS +LFA+ I ++ Q
Sbjct: 107 LVSESLFLIFELLIYLQSRYLFFFPISQS-----CVVGFSGLLFALFVIDCIQVSVRTVQ 161
Query: 166 QILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQE 225
I V++ + PW L++I ++P SF GHLSGI G Y I G D+++ C+
Sbjct: 162 LFGRIPVRSNWIPWIFLLLIQAILPGVSFLGHLSGIFAGYIY----ILGGFDWILPSCER 217
Query: 226 MINGEEQ 232
+ +++
Sbjct: 218 LHQCDDR 224
>gi|255082832|ref|XP_002504402.1| predicted protein [Micromonas sp. RCC299]
gi|226519670|gb|ACO65660.1| predicted protein [Micromonas sp. RCC299]
Length = 471
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 88/239 (36%), Gaps = 56/239 (23%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPWSTL--DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
IPP TL +V + +F P DVC++ AVI +RL+ SAF H D H
Sbjct: 76 AIPPGTLAIV----AANVAVFSLPDGVAFGDVCLNPYAVIHLAQLERLVTSAFVHVDAFH 131
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
L NM ++ G LE + G +FL+ L + + L++ S S A
Sbjct: 132 LLSNMQGVLQDGSFLESLDGTPRFLARCATLLGLSQCTLVGLSWAERRFYQRGSSASRRA 191
Query: 143 -----------------------------------------------IGFSAVLFAMKTI 155
+GFS V FA+K
Sbjct: 192 DAWLDDAVDRVSKYAYGGNSPGYHVPIRGTSSSSSAPKLLPFYNSGVVGFSGVNFALKVA 251
Query: 156 LTRLQP--DAYQQILNINVKAIYAPWFELIIIYLLVPNA-SFKGHLSGILVGLTYTDTP 211
+P + V A Y+ WFEL + L+VP+A +F H +G + GL P
Sbjct: 252 AAHRRPANSVVLVGGLVPVPARYSAWFELALGTLIVPSAGTFAAHFAGTIAGLISVYAP 310
>gi|452820434|gb|EME27476.1| hypothetical protein Gasu_49270 [Galdieria sulphuraria]
Length = 357
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 8/193 (4%)
Query: 19 LHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLD---VCISADAVI-QQRDYKRLILSA 74
LH + P + + FL + LNI W L+ +C+S + + + Y+ +
Sbjct: 35 LHSWKNHCPLSFITRNFLMMELVLNIISS-WVHLNNDNICLSFGRIFYKGQAYRVFVAPW 93
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F H + G LEK+ G +FLS+V++ T L YI L +F+
Sbjct: 94 FYHSAAEFASSAFAWCFIAG-PLEKLLGSLRFLSIVLWFVGLTGLLYITLG--LFFSKFH 150
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
S C +G S VLFA+ + + + ++ V + PW LI+ ++P++ F
Sbjct: 151 WSLPEDCVLGISNVLFALLVLAFSRFEFSLATLRDLPVPSWSFPWMILIVCQAMIPSSPF 210
Query: 195 KGHLSGILVGLTY 207
GHLSG+L G +
Sbjct: 211 LGHLSGVLAGTLF 223
>gi|290980876|ref|XP_002673157.1| rhomboid domain-containing protein [Naegleria gruberi]
gi|284086739|gb|EFC40413.1| rhomboid domain-containing protein [Naegleria gruberi]
Length = 296
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 28 PATLGLVFLQSMVY--LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
P + +V + ++V+ L+ R P + V + D +I ++ R++ S F H +H+ +
Sbjct: 12 PLSFTIVLINTIVFFILSFGRIP--SEFVSYNYDKIIGEKQVWRIVTSTFSHFSIIHILF 69
Query: 86 NMVSLILKGRQLEKI----------YGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDT 135
N+ SL RQ+E I + ++ + L VF++L+ + + +
Sbjct: 70 NLGSL-WGMRQVELIGQETLGSHSFHSVMEYFKITFLLLVFSTLFITVTYFCLVKFMKWE 128
Query: 136 SELSHCAIGFSAVLFAMKT--ILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
+ +G+S VLF M T IL + +N+ I P+ LI+ +L+P AS
Sbjct: 129 NYRQVNIVGYSGVLFGMMTMSILQNGISSKGSSMFGLNLPNILMPFMSLILTQMLIPQAS 188
Query: 194 FKGHLSGILVG-LTYTDTPIGWGLDYV 219
F GHL GI+ +TY I W LD V
Sbjct: 189 FVGHLGGIVGAFITYYGILI-WMLDVV 214
>gi|147773437|emb|CAN73436.1| hypothetical protein VITISV_006399 [Vitis vinifera]
Length = 353
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 36/156 (23%)
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE--LSHCAIGF 145
++L+ G +LE+I G + +++ L +++++L+A +V Y + ++ CAIGF
Sbjct: 1 MALVPLGSELERIMGSVRLFYMIVLLATSNAIFHVLIASLVAYNPFYSYHYLMNECAIGF 60
Query: 146 SAVLFAMKTILTRLQ-----------------------PDAYQ-QILNINVKAIYAP--- 178
S +LF+M I T L DA++ +I N++V++ AP
Sbjct: 61 SGILFSMIVIETSLSGAQTRRIFAETVISANVVNSLVSADAWELRICNLSVESC-APARL 119
Query: 179 ------WFELIIIYLLVPNASFKGHLSGILVGLTYT 208
W L++ LL+ N S GHL GIL G YT
Sbjct: 120 DVHMYAWILLVVFQLLMTNVSLLGHLCGILSGFAYT 155
>gi|397569632|gb|EJK46866.1| hypothetical protein THAOC_34449 [Thalassiosira oceanica]
Length = 246
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 94 GRQLEKIYGWGKFLSLVIFLTVF-TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
G LE+ G ++L IF + T YI +++++F + + A GFS V+F +
Sbjct: 4 GSSLERQIG-TIMMALTIFFGILLTGAIYISISWLLFAVFGLEKMMLQHAAGFSGVIFQL 62
Query: 153 KTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ + L P+ + + + V + PW L+ I L++P+ SF GHLSGIL+G
Sbjct: 63 SVLESNLSPNRTRSVFGVFTVSSRMYPWALLVAIQLVMPHISFLGHLSGILIG 115
>gi|406576099|ref|ZP_11051770.1| rhomboid family protein [Janibacter hoylei PVAS-1]
gi|404554503|gb|EKA60034.1| rhomboid family protein [Janibacter hoylei PVAS-1]
Length = 297
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 21/184 (11%)
Query: 23 ADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDD-- 80
D P T+G++ + ++V++ P +V + + + RLI SAF H +
Sbjct: 75 GDGRPMLTMGIIAICAVVWVAELLSPRVFQEVAFAP--ALGTAEPWRLITSAFAHSPNQP 132
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH 140
MH+ +NM++L L G LE++ GW ++L++ + + S+ ++L + Y +
Sbjct: 133 MHILFNMLALWLVGGYLERMLGWARYLAVYLVAALAGSVTWLLFQPVDPYDPGAYVPV-- 190
Query: 141 CAIGFSAV---LFAMKTILTR-LQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
+G S LFA +L R L D+ I I + A +I +VPN +++
Sbjct: 191 --VGASGAVFGLFAAVIVLNRHLGRDSSSMIATIGINA---------VIGFVVPNVAWEA 239
Query: 197 HLSG 200
HL G
Sbjct: 240 HLGG 243
>gi|115379487|ref|ZP_01466582.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|310822642|ref|YP_003955000.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363496|gb|EAU62636.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|309395714|gb|ADO73173.1| Rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
Length = 236
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 20/148 (13%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+IQQ R++ AFEHG +HL +NM + G LE+ G +FL L + V ++
Sbjct: 70 GPLIQQGQPWRVLTYAFEHGGPIHLLFNMSAAFTLGPSLERAIGSWRFLGLSLVTCVGSA 129
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
+ +L + +G S ++ L + P ++ L +
Sbjct: 130 AFALLF------------DFDQPTVGASGMILGWLGALLPIAPGYTRRQLGL-------- 169
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLT 206
W I + L+P S+ GHL G+L GL
Sbjct: 170 WLLQIALISLIPGVSWAGHLGGVLFGLP 197
>gi|302853316|ref|XP_002958174.1| hypothetical protein VOLCADRAFT_99376 [Volvox carteri f.
nagariensis]
gi|300256535|gb|EFJ40799.1| hypothetical protein VOLCADRAFT_99376 [Volvox carteri f.
nagariensis]
Length = 373
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
V + AV+ R + HG +H+ +NM++ + G LE+ G + L ++
Sbjct: 73 VSLVPHAVLYDYQVYRFFTAVLVHGGLLHVTFNMLAFVPIGASLERAAGTWQLLHFMLLS 132
Query: 114 TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM----KTILTRLQPDAYQQILN 169
+ Y +++ ++ L H A+GFS V+F + +L+ +++ I
Sbjct: 133 CFLEGVIYAVVSGLLAASGLVHGALFHGAVGFSGVIFGLLVWDSALLSSSSSSSHRSIFG 192
Query: 170 I-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ +V A + PW L++ L++P AS GHL+G+LVG
Sbjct: 193 LFHVPAPWYPWVLLLLCQLMLPEASLLGHLAGLLVG 228
>gi|405979365|ref|ZP_11037709.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392746|gb|EJZ87804.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 284
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ + R R + +AF H MH+ +NM++L G +LE++ G ++LS+ + + S
Sbjct: 97 NPAVGYRQVWRFLTTAFLHSGFMHIAFNMLALYSVGVELEQVLGRTRYLSVYLLSAIGAS 156
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L+ +LA+++ S L +G S +F + + LQ + ++ +A+
Sbjct: 157 LF--VLAWVLI----QPSSLGTVTVGASGAVFGLFGAMFVLQKQS-----GMDTRAVVGL 205
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLTYT 208
++I +VPN S++GH+ G+ G T
Sbjct: 206 LLVNLLIGFIVPNVSWQGHVGGLATGALAT 235
>gi|452822089|gb|EME29112.1| hypothetical protein isoform 2 [Galdieria sulphuraria]
Length = 196
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 10/172 (5%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P T ++ + +V+L I K WS DV + D VI ++ R I S H MHL NM
Sbjct: 19 PVTCLVIAICIIVWLVITYKGWSYYDVGCNYDCVIVDKETWRWISSTLSHISLMHLILNM 78
Query: 88 VSLILKGRQLEKIYGWGKFLS---LVIFLTVFTSLYYILLAYIVFYITNDTSELSHC-AI 143
SL +E+ G +L+ ++ FL+ +L+ L VF+ + ++ H +
Sbjct: 79 YSL-WNLSWMEQRLGSLVYLTWNVVIAFLSTCVTLFINYLQLTVFH----SEQVRHVYLV 133
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASF 194
G+SAVLF + I ++ A IL+ + + I+ P+ L ++ LLVP ASF
Sbjct: 134 GYSAVLFGLFVIASQHIKVARIWILDEVLISPIWIPFISLGVVTLLVPEASF 185
>gi|269954822|ref|YP_003324611.1| Rhomboid family protein [Xylanimonas cellulosilytica DSM 15894]
gi|269303503|gb|ACZ29053.1| Rhomboid family protein [Xylanimonas cellulosilytica DSM 15894]
Length = 282
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 69 RLILSAFEHGDDM--HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R + +AF H H+ +NM +L + G+ LE + G +F++L + + S+ +LLA
Sbjct: 117 RFLTAAFLHSTGFFGHILFNMWALYVTGQFLEPVLGRARFIALCVLSAIGGSVAVLLLAS 176
Query: 127 IVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
V +G S ++F AM +L RL +A Q I I +
Sbjct: 177 PV-----------QAVVGASGMVFGLFGAMVPVLRRLGGNAAQIIGLIAING-------- 217
Query: 183 IIIYLLVPNASFKGHLSGILVGLT 206
+I LVP S++GHL G++VGL
Sbjct: 218 -VIGFLVPGISWQGHLGGLVVGLA 240
>gi|357131644|ref|XP_003567446.1| PREDICTED: uncharacterized protein At3g17611-like [Brachypodium
distachyon]
Length = 326
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+I+ D +R + S F H + NM SL+ +G +LE+ G +F S+V L + +
Sbjct: 71 IIEFGDLRRFLFSVFFHTSEPQFVMNMSSLLWRGGRLEEYMGSFEFASMVASLIGLSQGF 130
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+LL+ + + + T+ + + GFS VL M+ + R + + + A YA
Sbjct: 131 TLLLSKGLLLLGDGTAYYQYSS-GFSGVLLGMQVLNARAGDIV---LFGVCIPAKYAELA 186
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTY 207
+L ++ L+ + G+LSGIL GLTY
Sbjct: 187 QLFLMQALIHEVNIVGNLSGILAGLTY 213
>gi|449015371|dbj|BAM78773.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 425
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
VCI + I Y RL + F H + +H++ NM+ L+ G LE+ G FL +V +
Sbjct: 56 VCIDPELQISSNTY-RLFTAPFFHVNLVHIFANMIVLLDIGPPLERRLGSFLFLFIVFLM 114
Query: 114 TVFTSLYYILLAYIV------FYITNDTSEL---------SH-CAIGFSAVLFAMKTILT 157
+ ++ +LA V F ++ L +H CA+GFS VLFA I
Sbjct: 115 ICVSGVFRAILAMSVRVALTPFEMSTRAPLLPLLSYIRRQTHACAVGFSGVLFAFLVIHV 174
Query: 158 R--LQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGW 214
+ D + + + + P L+++ L+VP GHL+G+LVG TY GW
Sbjct: 175 HQFVATDILWILGVVPCPSRFYPLALLVLLQLMVPAVDLCGHLAGMLVGYTYVR---GW 230
>gi|312086618|ref|XP_003145148.1| hypothetical protein LOAG_09573 [Loa loa]
Length = 146
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
+C+ ++ + ++ R++ S H DDMHLY+NM+SL+ KGR+LE G +FL L+
Sbjct: 1 MCLLPSRILYRSEWLRMLASTVMHVDDMHLYFNMISLLWKGRRLEPWLGSRRFLLLLATF 60
Query: 114 TVFTSLYYILLAYIV--FYITNDTSELSHCAIGFS 146
+ TS + L+Y+ + N ++ CA+GFS
Sbjct: 61 ALATSSTMVGLSYLADEVFTFNGGGYMNQCAVGFS 95
>gi|399526757|ref|ZP_10766509.1| peptidase, S54 family [Actinomyces sp. ICM39]
gi|398362686|gb|EJN46363.1| peptidase, S54 family [Actinomyces sp. ICM39]
Length = 290
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
++ AF HG +H+ +NM+SL GR +E + GW +FL++ + + S A+I+
Sbjct: 113 ILTGAFLHGGLLHILFNMLSLYWVGRAIEPVMGWWRFLTVYLVSALGGS------AFIIA 166
Query: 130 YITNDTSELSHCAIGFSAV---LFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIII 185
+ SE+ +G SA LF +L RL IL + V +Y
Sbjct: 167 WCLIQPSEIYVSTVGASAAVFGLFGAVFVLQRLGGSDTTAILTLLGVNLVYG-------- 218
Query: 186 YLLVPNASFKGHLSGILVGLTYT 208
+V S++GH+ G + G+ T
Sbjct: 219 -FMVSGISWQGHIGGAIAGVAAT 240
>gi|359419226|ref|ZP_09211185.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
gi|358244841|dbj|GAB09254.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
Length = 218
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 25/181 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I +Y RL+ S F H MH+ NM+SL+L G +E I G +FL L +L+
Sbjct: 37 IANHEYWRLLTSGFLHLSIMHIAVNMISLVLLGTIIEPILGTARFL-----LVYLVALFG 91
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
A + TN + + AI ++ AM I+ + + A Q I I V
Sbjct: 92 GSAAVTLLSGTNTATAGASGAI--YGLMGAMLVIVLKFKAPAGQVIAIIAVN-------- 141
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQKQ 241
I I + VP S GHL G+L G T + E++ G + + ++
Sbjct: 142 -IFISISVPGISLVGHLGGLLFGTLATVAAL---------YLPELVMGRQTPTIELRRRA 191
Query: 242 N 242
N
Sbjct: 192 N 192
>gi|319954282|ref|YP_004165549.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319422942|gb|ADV50051.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 288
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
++ AF HGD H+++NMV L GR ++G KF+++ +F L +I L+Y +F
Sbjct: 63 IVTYAFFHGDFGHIFWNMVMLYFTGRIFMNLFGERKFVNVYFLGAIFGGLLFI-LSYNIF 121
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIY-APWFELIIIYLL 188
L++ IG SA + A+ + P+ +++ NVK + F LI ++ +
Sbjct: 122 ---PALIGLNNSLIGASAAVMAVLIFVCTYTPNQEVRVILFNVKLWHVGVVFVLIDLFFI 178
Query: 189 VPNASFKG---HLSGILVGLTYTD-----TPIGWGLDYVVDKCQEMINGEEQEDM 235
+ G HL G +G Y IG G ++D Q + E++ +
Sbjct: 179 GGGVNIGGRLSHLGGAFIGYFYASQLTQGRDIGSGFSKMLDSIQNLFKKEKKAPL 233
>gi|219126331|ref|XP_002183413.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405169|gb|EEC45113.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 687
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF-----LTVFTSLYYIL 123
R + A H + HL++NM +L G +LE G K+ S+ F L ++T+++++L
Sbjct: 276 RGLSGATAHFETWHLFFNMQALYSLGSELESNDGSTKYSSVTFFMYTASLVLWTTIFWLL 335
Query: 124 LAYIVFYITNDTSELSHC---AIGFSAVLFAMKTILTRLQ----PDAYQQILN------I 170
L + + S ++ +GFS VLFA + + Q P + L +
Sbjct: 336 LETLKRRFESAMSPVASGDSPTVGFSGVLFAWMVVASLEQSQTCPVHFLPSLCFVTHEFV 395
Query: 171 NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGL 216
+ +AP +L I +L+P S GHL+GIL GL + WGL
Sbjct: 396 GFRFNFAPLVQLGIAQVLLPRVSLTGHLAGILSGLA-----LHWGL 436
>gi|224010728|ref|XP_002294321.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969816|gb|EED88155.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 827
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 37/198 (18%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLE--KIYGWGKFLSLV 110
VC + + + ++ R A H + +H+ +NM+SL GR+LE I+G FL
Sbjct: 262 SVCKNYNKMCIHHEWWRGFTGATAHFEPLHIGFNMMSLNTLGRELEGGGIFGSVVFLVYN 321
Query: 111 IFLTVFTSL-----YYILLAYIVFYITNDTSEL-------------SHCAIGFSAVLFAM 152
+ V TSL + L +I + I E+ +G+SAVLFA
Sbjct: 322 VAFVVMTSLVMMGMVFGRLQWIEYQILRTRDEVLRQQLEERQTRLRETSTVGYSAVLFAW 381
Query: 153 KTI--LTRLQPDAYQQILNINVKAIY------------APWFELIIIYLLVPNASFKGHL 198
I L R QP + + Y AP L I ++P SF GHL
Sbjct: 382 MVISTLERNQPTCPIPFFSDVCFSTYSVPGLPFLKFNIAPVISLFIAQFIMPRVSFMGHL 441
Query: 199 SGILVGLTYTDTPIGWGL 216
+GI+ G GWG+
Sbjct: 442 AGIICGFGLH---WGWGM 456
>gi|336176302|ref|YP_004581677.1| rhomboid family protein [Frankia symbiont of Datisca glomerata]
gi|334857282|gb|AEH07756.1| Rhomboid family protein [Frankia symbiont of Datisca glomerata]
Length = 377
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 51 TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLV 110
TLD + + +Y RL+ +AF H +H+ +NM +L L G QLE+I G ++L+L
Sbjct: 190 TLDYSLYGPGIAANDEYYRLLTAAFLHAGVLHILFNMYALYLLGSQLEQILGRARYLALF 249
Query: 111 IFLTV-FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN 169
+ + +L Y++ + F + T+ GF A + I RL+ D ++
Sbjct: 250 VVCAIGGNTLSYLINGWNTFSVGASTA-----VFGFFAAYY---VIARRLRADTSAILII 301
Query: 170 INVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
+ + +II + GH+ G++ GL
Sbjct: 302 VGIN---------LIITFTIARIDKWGHIGGLVAGL 328
>gi|145332609|ref|NP_001078170.1| rhomboid-like protein 14 [Arabidopsis thaliana]
gi|332642459|gb|AEE75980.1| rhomboid-like protein 14 [Arabidopsis thaliana]
Length = 173
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 152 MKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
MK +L Q + Y + I V YA W ELI++ + VPNASF GHL GIL G+ Y
Sbjct: 1 MKVVLNS-QAEDYSSVYGILVPTKYAAWAELILVQMFVPNASFLGHLGGILAGIIY 55
>gi|393199141|ref|YP_006460983.1| membrane protein [Solibacillus silvestris StLB046]
gi|406666244|ref|ZP_11074012.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
gi|327438472|dbj|BAK14837.1| uncharacterized membrane protein [Solibacillus silvestris StLB046]
gi|405385783|gb|EKB45214.1| Rhomboid protease gluP [Bacillus isronensis B3W22]
Length = 207
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
L +S + +I ++ R+I S F H MH+ +NM SL L G +LEKI G +FL++
Sbjct: 42 LYAGMSVNGLIAAGEWWRIITSMFLHAGFMHVLFNMFSLFLFGPELEKIAGKMRFLTI-- 99
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVL------FAMKTILTR-LQPDAY 164
Y L T T + + ++G S L F TR L P
Sbjct: 100 ---------YFLAGIFGVAATYATQDAYYASVGASGALYGIFGAFGALVYYTRHLFPQLR 150
Query: 165 QQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
Q IL + V + II+ L PN + HL G++ G
Sbjct: 151 QIILPLIVIS--------IIMTFLTPNINIAAHLGGLVTGF 183
>gi|224132770|ref|XP_002327876.1| predicted protein [Populus trichocarpa]
gi|222837285|gb|EEE75664.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLS 199
A+G+S V+F TIL+ QP + + +++ +AP+ LI ++VP ASF GHLS
Sbjct: 58 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 117
Query: 200 GILVGLTYTDTPIGWGL 216
GI+VG I WGL
Sbjct: 118 GIVVGYA-----IAWGL 129
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 25/144 (17%)
Query: 67 YKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
Y RL+ SAF H +HL +NM +L L G +E+ G ++++ + + VF+
Sbjct: 122 YWRLLTSAFLHAGVLHLLFNMYALYLFGPFVERALGSARYVAAYLTMAVFSG-------- 173
Query: 127 IVFYITNDTSELSHCAIGFSAVLFAM----KTILTRLQPDAYQQILNINVKAIYAPWFEL 182
V Y+ D + +G S +F + +L R + D ++ + V + +
Sbjct: 174 AVVYLLTDPRTFT---VGASGAVFGLFGYALVLLVRAKQDVRTLLVLLAVNGVIS----- 225
Query: 183 IIIYLLVPNASFKGHLSGILVGLT 206
L PN S++GHL G + GLT
Sbjct: 226 -----LAPNISWQGHLGGFIAGLT 244
>gi|381394664|ref|ZP_09920376.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329631|dbj|GAB55509.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 211
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 23/150 (15%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
++Q Y R+I S F HG +H+ +NM L + G QLE G S+ L F +
Sbjct: 40 GPLVQDGQYWRMISSGFLHGSILHIAFNMYLLYMLGPQLESALG-----SVRFSLMYFGA 94
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L LA + F T S +G + +F T+ R + +P
Sbjct: 95 LIGGTLAVLSFGFMQPTLGASGAVLGLAGAMFI--TLWGR------------GISPTKSP 140
Query: 179 WFELIIIY----LLVPNASFKGHLSGILVG 204
F L+++ LL+P SF GH G++ G
Sbjct: 141 VFGLVVLNLGLPLLIPGISFWGHFGGVVAG 170
>gi|145348648|ref|XP_001418758.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578988|gb|ABO97051.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 351
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 69/187 (36%), Gaps = 3/187 (1%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQ--RDYKRLILSAFEHGDDM 81
D P AT +V ++ + VC S + Y R+ S F HG
Sbjct: 14 DGAPLATTAVVIAVAISFALALAANGDFARVCASPRLAFEHPLSSYHRVWTSTFSHGSFP 73
Query: 82 HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC 141
H N ++ + LE+ G F L A ++ + C
Sbjct: 74 HALLNCLAFVPMASALERSIGTTHFAWLFATFAHAAYALSASAATALWMALGYRASYESC 133
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
AIG S V+FA+ T + + + + V + Y P L+ I LL+P SF GH G
Sbjct: 134 AIGMSGVVFALIVCETNVNDVERRSVFGLFTVSSEYYPIALLLFIQLLMPGVSFIGHAGG 193
Query: 201 ILVGLTY 207
I G Y
Sbjct: 194 IAAGWLY 200
>gi|303290999|ref|XP_003064786.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453812|gb|EEH51120.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 370
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 48/201 (23%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSL----------ILKGRQLEKIYG 102
DVC++ AV+ +R++ SAF H D HL NM L + G +E G
Sbjct: 168 DVCLNPYAVLHMNQLERVVTSAFVHRDLFHLLNNMTGLGAFSVFSHCTVEDGSYVESRDG 227
Query: 103 WGKFLSLVIFLTVFTSLYYILLAYIVFYIT------------NDTSEL------------ 138
G FL+ L V + + L++ +T +D
Sbjct: 228 VGSFLAQTALLLVLSQGALVTLSWAERKLTGRGGSRGASGWIDDALGGLTTTTTTTTRRS 287
Query: 139 -----------SHCAIGFSAVLFAMKTILTRLQPDAYQQIL--NINVKAIYAPWFELIII 185
S +GFS V +A+K + + +P + +L + V A Y+ W EL +
Sbjct: 288 GGGGAETLPFYSSGVVGFSGVNYALKVVASHRRPLGSRVLLLGVLPVPARYSFWCELALN 347
Query: 186 YLLVPNA-SFKGHLSGILVGL 205
LL+P++ +F H +G + GL
Sbjct: 348 TLLMPSSGTFAAHFAGCVAGL 368
>gi|367004200|ref|XP_003686833.1| hypothetical protein TPHA_0H01940 [Tetrapisispora phaffii CBS 4417]
gi|357525135|emb|CCE64399.1| hypothetical protein TPHA_0H01940 [Tetrapisispora phaffii CBS 4417]
Length = 269
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 55 CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT 114
C + + + D RL+L H HL +N +L E +G ++ L+
Sbjct: 41 CTLSPSSLWDLDLTRLLLYPLAHLSIPHLLFNCFALFTPLNAFEATHGTVYTFIMLNILS 100
Query: 115 VFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL-TRLQPDAYQQILNINVK 173
V T + Y ++ + ++ T ++ A G+ LFA ++ + ++P NI +
Sbjct: 101 VVTGVIYCVVGHWLY----PTVAIAG-ASGWCFTLFAYFSVRESTVKPTTTLFFANITIP 155
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
I P L++I LL+P +SF GHL G+LVG
Sbjct: 156 TILDPVVTLVVIALLIPGSSFWGHLFGLLVG 186
>gi|299538296|ref|ZP_07051581.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|424736343|ref|ZP_18164803.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
gi|298726498|gb|EFI67088.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|422949946|gb|EKU44319.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 14/154 (9%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
+ I A+ +IQ ++ R+ + F H MH+++NM SL L G +LEKI G +F+++ +
Sbjct: 43 NYGIQANFLIQSGEWWRVFSAIFLHAGFMHVFFNMFSLYLFGPELEKIAGKARFITIYLV 102
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAI-GFSAVLFAMKTILTRLQPDAYQQILNIN 171
+ + +A +FY ++ S + AI G A+ R P + IL I
Sbjct: 103 SGIVGN-----MATYIFYDSSYASLGASGAIFGIFGAFGALVYYTRRTMPMLRKLILPII 157
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
V + +I+ L PN + HL G++ G
Sbjct: 158 VIS--------VIMTFLQPNVNVFAHLGGLVTGF 183
>gi|298713340|emb|CBJ33566.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 677
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 54 VCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL 113
V IS ++R+Y RL ++F H + +HL +N + R+LE++ G ++L L + L
Sbjct: 223 VAISYARFWEEREYWRLFTASFSHFEPLHLVFNAMG-TWNTRELERLLGTFRYLYLSLDL 281
Query: 114 TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT----RLQPDAYQQILN 169
V T + +++ + + S+ A+GFS VLFA T L P
Sbjct: 282 VVTTIMVVMVIKHALVKWRGVESQREGKAVGFSCVLFAYMTYLAVAMREFCPIGTLCFST 341
Query: 170 INVKAIYA---------PWFELIIIYLLVPNASFKGHLSGILVG 204
++ + P+ I +++P A+F GHLSGI +G
Sbjct: 342 YSIPMFWGMPSLPVNLGPFASQAIAQVVMPRAAFLGHLSGIFMG 385
>gi|84497160|ref|ZP_00995982.1| membrane spanning protein [Janibacter sp. HTCC2649]
gi|84382048|gb|EAP97930.1| membrane spanning protein [Janibacter sp. HTCC2649]
Length = 260
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 69 RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R + SAF H + +H+ +NM +L + G+ LE + G +F +L + S+ Y+LLA+
Sbjct: 72 RFLTSAFAHAPNNFLHIGFNMWALWMMGQYLEPMLGRARFAALYLISAFGGSVVYLLLAF 131
Query: 127 ---IVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
I D A+G S +F + L Q+ L + +YA
Sbjct: 132 PHSIAQLNNRDYGPWETAAVGASGAVFGLFGAFLIL-----QRRLGRSAATMYATIAINA 186
Query: 184 IIYLLVPNASFKGHLSGILVGLT 206
+I +VP +++ HL G LVG+
Sbjct: 187 VIGFVVPGIAWQAHLGGFLVGIA 209
>gi|320168465|gb|EFW45364.1| hypothetical protein CAOG_03370 [Capsaspora owczarzaki ATCC 30864]
Length = 451
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
V S AV +++ R+I + F H +HL NM S + E+ G +++
Sbjct: 109 QVTFSYAAVYERQQLSRIITAPFFHASLVHLLMNM-SAVWTCSFFEEERGTLEYMRATAL 167
Query: 113 LTVFTSLYYILLAYIVFYITN-------DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ 165
L ++ ++ L + + N S + ++G+S V F + T+L P
Sbjct: 168 LIGLSAFVHLALTHCLVLHANWRGLVERRDSYRTCLSVGYSGVAFGLATLLGLAHPMYPV 227
Query: 166 QILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
L N A AP F LI+ LV AS H+SGI+ G+
Sbjct: 228 PFLFANFPAWSAPLFNLILTQFLVRRASLLAHVSGIIAGV 267
>gi|428216600|ref|YP_007101065.1| Peptidase S54, rhomboid domain-containing protein [Pseudanabaena
sp. PCC 7367]
gi|427988382|gb|AFY68637.1| Peptidase S54, rhomboid domain protein [Pseudanabaena sp. PCC 7367]
Length = 530
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
AV Q ++ RL+ + F H +HL+ NM+ L G +E GW ++L + +F + + L
Sbjct: 370 AVRHQGEWWRLVNAMFLHYGYIHLFMNMIGLYFLGGFVETSLGWWRYLLVYLFSGIGSML 429
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ-QILNINVKAIYAP 178
++A+ V + EL +G S + M L A+Q + + + +
Sbjct: 430 TVTIVAFFV------SPELPQITVGASGAIMGMVGATGALLWLAWQRERAKVAARRLRTV 483
Query: 179 WFEL---IIIYLLVPNASFKGHLSGILVG 204
F + + VPN SF GH SG+++G
Sbjct: 484 LFIIGLQVFFDFAVPNVSFVGHTSGLILG 512
>gi|111226097|ref|YP_716891.1| hypothetical protein FRAAL6764 [Frankia alni ACN14a]
gi|111153629|emb|CAJ65387.1| Hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 252
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 39/180 (21%)
Query: 43 NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
N F ++ + I+AD Y RL+ +AF H +H+ +NM +L L G QLE I G
Sbjct: 71 NRFTDDFAMIGFRIAAD-----DQYYRLLTAAFLHAGVLHILFNMYALYLLGFQLEAILG 125
Query: 103 WGKFLSLVIFLTV-FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM----KTILT 157
++L L + V +L Y+L LS ++G S +FA I
Sbjct: 126 RARYLGLFVAGAVGGNTLSYLL------------GGLSTASVGASTAIFAFFAAYYVIAR 173
Query: 158 RLQPDAYQ--QILNINVKAIYAPWFELIIIYLLVPNASFKGHL----SGILVGLTYTDTP 211
RL+ D+ Q +L IN ++I N GHL +G++VGL Y P
Sbjct: 174 RLRVDSRQILVVLGIN-----------LLITFSFSNIDKWGHLGGLAAGVIVGLIYAYVP 222
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I + ++ RLI + F H +HL NM +L + GR LE G +FL+L + + L
Sbjct: 134 IAEGEWYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYL----ISGLGG 189
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ--QILNINVKAIYAPW 179
+ AY++ T+ S G A LF + RL D Q IL IN
Sbjct: 190 NVAAYLISAPNAATAGASTAIFGLFAALFVVG---RRLGRDVSQVLPILVIN-------- 238
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
++ L VP S GHL G+++G
Sbjct: 239 ---LVFTLTVPGISIPGHLGGLVLG 260
>gi|383456807|ref|YP_005370796.1| rhomboid family protein [Corallococcus coralloides DSM 2259]
gi|380730049|gb|AFE06051.1| rhomboid family protein [Corallococcus coralloides DSM 2259]
Length = 252
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 20/144 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+Q +Y RL+ FEHG MHL +NM+++ G LE+ G +FL L + + S +
Sbjct: 89 VQAGEYWRLLGMVFEHGGAMHLLFNMLAVYSLGASLERGIGSLRFLGLSLVTALGGSAFA 148
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+ F T S +G+ AM ILT Q + + W
Sbjct: 149 LF-----FNFDTVTVGASGMILGWGG---AMLPILT--QQGRREHMF----------WLV 188
Query: 182 LIIIYLLVPNASFKGHLSGILVGL 205
+ + L+P S+ GHL G + GL
Sbjct: 189 QVAVISLLPGVSWAGHLGGFVFGL 212
>gi|66819575|ref|XP_643447.1| hypothetical protein DDB_G0275611 [Dictyostelium discoideum AX4]
gi|60471600|gb|EAL69556.1| hypothetical protein DDB_G0275611 [Dictyostelium discoideum AX4]
Length = 458
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 20/111 (18%)
Query: 108 SLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI 167
+L + +V S+ +L+ + +Y+ S S C++GFS +FA+ TI
Sbjct: 225 TLPLMTSVLISMMNFILSLVAYYLDIGYSYYS-CSVGFSGCIFALLTI----------HC 273
Query: 168 LNINVKAIYA---------PWFELIIIYLLVPNASFKGHLSGILVGLTYTD 209
N N+ ++Y PW LII ++P SF GHLSGIL+G Y +
Sbjct: 274 FNDNLVSLYGITRIPSKLYPWAILIITNFILPMTSFVGHLSGILIGTLYMN 324
>gi|384563997|ref|ZP_10011101.1| putative membrane protein [Saccharomonospora glauca K62]
gi|384519851|gb|EIE97046.1| putative membrane protein [Saccharomonospora glauca K62]
Length = 330
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 18/147 (12%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+AV+ ++ RL+ S F H +HL NM++L + GR LE + G +FL+ V FL++F
Sbjct: 148 EAVVLIDEWWRLLTSGFLHYGLLHLAMNMLALWVLGRDLEMLLGRVRFLA-VYFLSMFAG 206
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGF-SAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
+ +++ T+ S G AVL A+ + RL P I+ +NV
Sbjct: 207 AVAV---FVLGEPGTATAGASGAIYGLMGAVLVAVLRL--RLNPTTAIAIIVLNV----- 256
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVG 204
+ + +PN S GHL G++ G
Sbjct: 257 ------FLSMSIPNISLLGHLGGLVAG 277
>gi|357019099|ref|ZP_09081357.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356481160|gb|EHI14270.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 281
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 18/143 (12%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +Y RL+ SAF H MHL +NM +L + G LE G +F L + S+
Sbjct: 108 VAAGEYYRLVTSAFLHFGLMHLLFNMFALYVIGGPLEAALGRLRFGLLYALSALGGSVLV 167
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
LLA N T+ S G LFA ++ + LN++V+ +
Sbjct: 168 YLLAM------NPTAGASGAVFG----LFAATYVVAKR--------LNLDVRFVTGLIVV 209
Query: 182 LIIIYLLVPNASFKGHLSGILVG 204
++I +VP S++GHL G+L G
Sbjct: 210 NLVITFVVPGISWQGHLGGLLTG 232
>gi|396586115|ref|ZP_10486089.1| peptidase, S54 family [Actinomyces sp. ICM47]
gi|395546456|gb|EJG14095.1| peptidase, S54 family [Actinomyces sp. ICM47]
Length = 241
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 38/175 (21%)
Query: 38 SMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQL 97
++V L + +PW+ L AF HG +H+ +NM+SL GR +
Sbjct: 51 ALVPLFLMSRPWTILT-------------------GAFLHGGLLHILFNMLSLYWVGRAI 91
Query: 98 EKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAV---LFAMKT 154
E + GW +FL++ + + S A+I+ + SEL +G S LF
Sbjct: 92 EPVLGWWRFLTVYLLSALGGS------AFILAWCLIQPSELLVGTVGASGAVFGLFGAVF 145
Query: 155 ILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
+L RL IL + + +Y L S++ H+ G +VG+ T
Sbjct: 146 VLQRLGGADTTPILTLLGINLVYG---------FLASGISWQAHIGGAVVGVAAT 191
>gi|429758897|ref|ZP_19291409.1| peptidase, S54 family [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172593|gb|EKY14141.1| peptidase, S54 family [Actinomyces sp. oral taxon 181 str. F0379]
Length = 264
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R++ +AF H + MH+ +NMVSL GR LE G G + L + + +L ++
Sbjct: 89 RILTTAFLHVNLMHIAFNMVSLYAIGRALEPALGRGPYFCLYLLSALGGTL------GVL 142
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
++ D S +G S +F + + LQ A I+V+A+ ++ +
Sbjct: 143 GWVLIDPSSALTVTVGASGAIFGLFGSVFVLQRAA-----GIDVRAVVGLLAVNLLYGFI 197
Query: 189 VPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQE 233
V S++ HL G+L G+ T WG+ + K + + ++Q
Sbjct: 198 VSGVSWQAHLGGLLFGMLAT-----WGM-LALGKPRSGMTAKKQR 236
>gi|442322030|ref|YP_007362051.1| rhomboid family protein [Myxococcus stipitatus DSM 14675]
gi|441489672|gb|AGC46367.1| rhomboid family protein [Myxococcus stipitatus DSM 14675]
Length = 241
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+Q Y RL+ +AFEHG +HL +NM ++ G LE+ G +F L + + S +
Sbjct: 77 AVQAGQYWRLVAAAFEHGGILHLAFNMSVVVTLGFTLERGIGSLRFAGLSLVTALGASAF 136
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+L F S +G++ + + T R + W
Sbjct: 137 SLL-----FDFDKTMVGASGMILGWAGAMLPIATRQGRRE---------------LGTWL 176
Query: 181 ELIIIYLLVPNASFKGHLSGILVGL 205
+ + L+P S+ GHL G L GL
Sbjct: 177 VQVAVLSLLPMVSWSGHLGGFLFGL 201
>gi|290978551|ref|XP_002671999.1| predicted protein [Naegleria gruberi]
gi|284085572|gb|EFC39255.1| predicted protein [Naegleria gruberi]
Length = 230
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 138 LSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKG 196
L C+IGFS V+F+ TI + + I+V + Y PW L++ L P++SF G
Sbjct: 83 LHECSIGFSGVIFSYLTIASTDTSQTTNSLFGMISVPSKYYPWILLLVTSFLFPSSSFVG 142
Query: 197 HLSGILVG 204
HL GI+ G
Sbjct: 143 HLFGIISG 150
>gi|298706194|emb|CBJ29235.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 256
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
Query: 20 HLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGD 79
H G + + AT L+ + +V+L + P T A A+ ++ RL+ + HG
Sbjct: 70 HSGGNGVLTATNALLVINFLVFLQQQQDPSVTTSFYKLAYAITDHGEWYRLVTAVMLHGG 129
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS 139
HL N ++L GR E G KF++L + V + +L+ IV +T
Sbjct: 130 WGHLAGNSMALFNIGRGTETYMGTEKFVALYVCSGVSGN----VLSCIVDPLTP------ 179
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
++G S +F + + + + + V ++ F +++ LLVPN GHL
Sbjct: 180 --SLGASGAIFGLLGAEAMIHLAGPKASMPLFVSSVGQTAFFAVLVGLLVPNIDHWGHLG 237
Query: 200 GILVGLTYT 208
G + G T
Sbjct: 238 GFVGGAALT 246
>gi|334335573|ref|YP_004540725.1| rhomboid family protein [Isoptericola variabilis 225]
gi|334105941|gb|AEG42831.1| Rhomboid family protein [Isoptericola variabilis 225]
Length = 292
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 30/165 (18%)
Query: 69 RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R + +AF H +H+ +NM +L + G+ LE + G G+F+ L + V S+ ++LLA
Sbjct: 121 RFLTAAFLHSTSGVLHILFNMWALWITGQALEPLLGRGRFVVLALLSAVGGSVGWLLLAG 180
Query: 127 IVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+G S ++F A+ +L R+ A Q ++ + +
Sbjct: 181 -----GPADGTWYQGVVGASGMVFGLFGALIPVLRRMGGSARQIVVLLAING-------- 227
Query: 183 IIIYLLVPNASFKGHLSGILVGL----TYTDTP------IGWGLD 217
+I +VP +++ HL G++ GL Y P +GW +
Sbjct: 228 -VIGFVVPGIAWQAHLGGLVTGLAVGAAYARAPRERQALVGWAVP 271
>gi|333376122|ref|ZP_08467914.1| rhomboid family protein [Kingella kingae ATCC 23330]
gi|332968857|gb|EGK07904.1| rhomboid family protein [Kingella kingae ATCC 23330]
Length = 221
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
A+ + Y+RLI SAF H D HL++N+ +L R + IYGW FL L + +L
Sbjct: 38 AIRYNKQYQRLITSAFLHADGWHLFFNLFTLYFFSRVIAYIYGWLGFLLLFFGAVLAGNL 97
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP- 178
+ + L Y + + G S +LFA TI + I IYA
Sbjct: 98 FSLWL-----YKNRPSYAAIGASGGVSGILFASITI-NPMSEIMIFPIPIPITAWIYATL 151
Query: 179 WFELIIIYLLVP----NASFKGHLSGILVGLTYT 208
+F + +L P N HL G G+ +
Sbjct: 152 YFAYSVAMMLSPRQWDNTGHAAHLGGAACGMLFA 185
>gi|427390838|ref|ZP_18885244.1| hypothetical protein HMPREF9233_00747 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732574|gb|EKU95382.1| hypothetical protein HMPREF9233_00747 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 221
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 12/178 (6%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYN 86
P AT+ L+ + VYL WS L + I + R I SAF H HL +N
Sbjct: 14 PWATVALIAINIGVYL--VEMVWSGLSQALLFAPGIAEDQPYRFISSAFAHSGFWHLIFN 71
Query: 87 MVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFS 146
M +L L G LE+ G +F+ L + +++ +L A + DT +G S
Sbjct: 72 MYALWLMGMFLERAIGRWRFVMLYALAAIGGNVFVLLTA------SEDTMGWWTGVVGAS 125
Query: 147 AVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+F + L +Q + + +V+ + L+I ++ N S++ H+ G++VG
Sbjct: 126 GAVFGLFGALFVVQ----RHLGRNDVQLLVIIGINLVIGFMPGMNISWQSHVGGLIVG 179
>gi|116333635|ref|YP_795162.1| membrane-associated serine protease [Lactobacillus brevis ATCC 367]
gi|116098982|gb|ABJ64131.1| Membrane-associated serine protease [Lactobacillus brevis ATCC 367]
Length = 226
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 25/190 (13%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWST-LDVCISADA----VIQQRDYKRLILSAFEHG 78
+ P T GLV + +V++ + ST L+V ++ A +IQQ + RLI F H
Sbjct: 12 NQTPYMTTGLVVIMVLVFVAMTLAGGSTSLNVLVAFGAKVNPLIQQGQWWRLITPMFLHI 71
Query: 79 DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE- 137
H++ NMV+L G QLE +G +F L+IFL V I + +
Sbjct: 72 GFTHIFLNMVTLYFVGTQLEAAFGHARF--LIIFL--------------VAGIGGNVASF 115
Query: 138 --LSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY-LLVPNASF 194
L+ + G S +F + L +Q + + + + + I + L P
Sbjct: 116 CFLNSLSAGASTAIFGLFGAFMMLGESFWQNPIIRQLARTFLAFVVMNIAFDLFTPGIDL 175
Query: 195 KGHLSGILVG 204
GHL G++ G
Sbjct: 176 AGHLGGLIAG 185
>gi|312193973|ref|YP_004014034.1| rhomboid family protein [Frankia sp. EuI1c]
gi|311225309|gb|ADP78164.1| Rhomboid family protein [Frankia sp. EuI1c]
Length = 390
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 32 GLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLI 91
G+ L ++N F TLD + + Q+ +Y RL+ +AF HG +H+ +NM +L
Sbjct: 193 GVPGLTGTSHINQF-----TLDYSLIGVDIAQKHEYWRLVTAAFLHGSVLHIAFNMYALF 247
Query: 92 LKGRQLEKIYGWGKFLSLVIFLTV-FTSLYYIL 123
L G QLE I G ++L+L + +L Y++
Sbjct: 248 LLGTQLEAILGRVRYLALFFACAIGGNTLSYVI 280
>gi|293193637|ref|ZP_06609859.1| rhomboid family protein [Actinomyces odontolyticus F0309]
gi|292819869|gb|EFF78872.1| rhomboid family protein [Actinomyces odontolyticus F0309]
Length = 292
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
++ AF HG MH+ +NM+SL GR +E + G +FL+L + + S A+I+
Sbjct: 115 VLTGAFLHGGIMHILFNMLSLYWVGRAIEPVLGRWRFLTLYLVSALGGS------AFILV 168
Query: 130 YITNDTSELSHCAIGFSAV---LFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIII 185
+ SE+ +G S LF +L RL IL + + +Y
Sbjct: 169 WCLIQPSEIFVSTVGASGAVFGLFGAVFVLQRLGGSDTTAILTLLGINLVYG-------- 220
Query: 186 YLLVPNASFKGHLSGILVGLTYT 208
+V S++GH+ G + G+ T
Sbjct: 221 -FMVSGISWQGHIGGAIAGVGAT 242
>gi|375098380|ref|ZP_09744643.1| putative membrane protein [Saccharomonospora cyanea NA-134]
gi|374659112|gb|EHR58990.1| putative membrane protein [Saccharomonospora cyanea NA-134]
Length = 333
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 26/144 (18%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ RL+ S F H +HL NM++L + GR LE + G +FL+ V FL++F +
Sbjct: 156 EWWRLLTSGFLHYGLLHLAMNMLALWVLGRDLEMLLGRVRFLA-VYFLSMFAGGAAV--- 211
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILT-----RLQPDAYQQILNINVKAIYAPWF 180
++ D + + A G A+ M IL RL P I+ +NV
Sbjct: 212 ----FVFGDPATGTAGASG--AIYGLMGAILVAVLRLRLNPTTAIGIIVLNV-------- 257
Query: 181 ELIIIYLLVPNASFKGHLSGILVG 204
II + +PN S GHL G++ G
Sbjct: 258 ---IISVSIPNISLLGHLGGLVAG 278
>gi|154508338|ref|ZP_02043980.1| hypothetical protein ACTODO_00835 [Actinomyces odontolyticus ATCC
17982]
gi|153797972|gb|EDN80392.1| peptidase, S54 family [Actinomyces odontolyticus ATCC 17982]
Length = 231
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYIT 132
AF HG MH+ +NM+SL GR +E + G +FL+L + + S A+I+ +
Sbjct: 57 GAFLHGGIMHILFNMLSLYWVGRAIEPVLGRWRFLTLYLVSALGGS------AFILVWCL 110
Query: 133 NDTSELSHCAIGFSAV---LFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIIIYLL 188
SE+ +G S LF +L RL IL + + +Y +
Sbjct: 111 IQPSEIFVSTVGASGAVFGLFGAVFVLQRLGGSDTTAILTLLGINLVYG---------FM 161
Query: 189 VPNASFKGHLSGILVGLTYT 208
V S++GH+ G + G+ T
Sbjct: 162 VSGISWQGHIGGAIAGVCAT 181
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL+ +AF H + H+ NM+SL G +E + G +FL+L + V S
Sbjct: 173 VAEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGS--- 229
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+A +F N S +G S +F + IL + V+A P+
Sbjct: 230 --VASYLFAAPNAAS------LGASGAIFGLF---------GATGILVLRVRADVRPFVA 272
Query: 182 LIIIYLLV----PNASFKGHLSGILVGL 205
L++I L++ N +++ H+ G++VG+
Sbjct: 273 LLVINLIITFGWSNIAWQAHIGGLVVGV 300
>gi|87310180|ref|ZP_01092312.1| probable glpG protein [Blastopirellula marina DSM 3645]
gi|87287170|gb|EAQ79072.1| probable glpG protein [Blastopirellula marina DSM 3645]
Length = 312
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
I+ RLI F HG MH+ +NM G LE+ G G++L +V+ L +F +
Sbjct: 163 AIEAGQVWRLITPIFPHGGLMHIAFNMYMWYSFGGILERRLGSGRYLMMVLGLAIFGN-- 220
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAM---KTILTRLQPD-----AYQQILNINV 172
+ A +IT + SEL AIG S VLF + + + +P Q +L + +
Sbjct: 221 -VAAASASIFITGNASEL--YAIGISGVLFGLFGFAWVKSTFEPQFGIYLPSQSVLMMML 277
Query: 173 KAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTP 211
WF L + V N + GH G++ G+ P
Sbjct: 278 ------WFGLCWLG-FVGNIANWGHTCGLIAGVIAGFIP 309
>gi|169347291|ref|ZP_02866229.1| hypothetical protein CLOSPI_00006 [Clostridium spiroforme DSM 1552]
gi|169293908|gb|EDS76041.1| peptidase, S54 family [Clostridium spiroforme DSM 1552]
Length = 214
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 7/145 (4%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
VI +DY RLI + F H MH++ N SL+ G +E + G ++ ++V+ ++F +
Sbjct: 49 VIHLKDYYRLITANFIHFGLMHIFCNCYSLLNFGSVMEYLLGQKRY-AIVMIASMFATTI 107
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+ Y++ + S + G S +F + L L + ++ + K I +
Sbjct: 108 FPCALYLI-----NGSGANSVMGGISGAIFGLMGALLALAME-FKSVYAYVFKQIASSVI 161
Query: 181 ELIIIYLLVPNASFKGHLSGILVGL 205
+++I LVP+ S GH+SG++ G
Sbjct: 162 LMLLISFLVPSISLVGHVSGMIGGF 186
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL+ +AF H + H+ NM+SL G +E + G +FL+L + V S
Sbjct: 173 VAEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGS--- 229
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+A +F N S +G S +F + IL + V+A P+
Sbjct: 230 --VASYLFAAPNAAS------LGASGAIFGLF---------GATGILVLRVRADVRPFVA 272
Query: 182 LIIIYLLV----PNASFKGHLSGILVGL 205
L++I L++ N +++ H+ G++VG+
Sbjct: 273 LLVINLIITFGWSNIAWQAHIGGLVVGV 300
>gi|397573927|gb|EJK48937.1| hypothetical protein THAOC_32226 [Thalassiosira oceanica]
Length = 713
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 38/222 (17%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
PAT ++ + + + + + V ++ + ++ R I A H D +H+ +NM
Sbjct: 248 PATCVIILVNVALAFHYWNRRVDPSSVSKQYARIVHEHEWWRGITGATAHFDLLHVGFNM 307
Query: 88 VSLILKGRQLE-KIYGWGKFLSLVIFLTVFTSLYYILLAYI-VFYITND----------- 134
VS+ GR++E + +FL L V+T++ I + Y + Y+
Sbjct: 308 VSMDNLGREIEGTLLNSIEFLMWNFALVVYTTIIMIAMVYARIRYLQRKIDACGNAEIRA 367
Query: 135 TSEL------SHCAIGFSAVLFAMKTILT--RLQPD-----------AYQQILNIN-VKA 174
T E+ S ++G+SAVLFA + T R P A ++ ++ ++
Sbjct: 368 TYEMKQDKLRSTSSVGYSAVLFAWMVVSTMERKMPTCPIPFAKDVCFATYEVPGLSWLRF 427
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGL 216
++P LI ++ P SF GHL+GI+ G + WGL
Sbjct: 428 NWSPIVSLIFCQIIFPRVSFIGHLAGIICGFL-----LHWGL 464
>gi|377564810|ref|ZP_09794121.1| rhomboid family protein [Gordonia sputi NBRC 100414]
gi|377527964|dbj|GAB39286.1| rhomboid family protein [Gordonia sputi NBRC 100414]
Length = 234
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +Y RL+ + F H MH+ NM+SL + GR LE G +FL +V F+ +F
Sbjct: 53 VANGEYWRLLTAGFLHFTVMHIALNMISLYILGRDLETALGHSRFL-MVYFIALFGGSAA 111
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL--TRLQPDAYQQILNINVKAIYAPW 179
++L F N S + AI ++ AM I+ R+ P I+ IN
Sbjct: 112 VML----FEAGNVRSAGASGAI--YGLMGAMLVIVVKARISPTGVITIIVIN-------- 157
Query: 180 FELIIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
++ + +P S H+ G++ G T I
Sbjct: 158 ---LVFSVTMPGISLAAHVGGLVFGAAATAAVI 187
>gi|50547373|ref|XP_501156.1| YALI0B20878p [Yarrowia lipolytica]
gi|74635233|sp|Q6CDV6.1|RBD2_YARLI RecName: Full=Rhomboid protein 2
gi|49647022|emb|CAG83409.1| YALI0B20878p [Yarrowia lipolytica CLIB122]
Length = 297
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 27 PPA-TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
PPA +LGL ++++L R W D+ + + A + + R+ H HL
Sbjct: 17 PPALSLGLPIFLTVIFLLSQRYVWIEDDLELRSTA-LTNFELNRISFYPLVHATWFHLLL 75
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA--- 142
N+V+L Q E++ G + ++ L V T++ + LL+ F D + L A
Sbjct: 76 NLVALQPIVSQFERVNGTVRTGIVLNILAVVTAIPWCLLSIGFF---PDEAVLGSSAWIF 132
Query: 143 --IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
+G+ A+ + K T+L P N+ V P L++I +++P++SF GHL G
Sbjct: 133 SFMGYWAIRESSKQPTTQLAP-------NLVVPTWLLPIIYLVVIAIVIPSSSFIGHLLG 185
Query: 201 ILVG 204
++ G
Sbjct: 186 LIAG 189
>gi|282890177|ref|ZP_06298707.1| hypothetical protein pah_c014o028 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174300|ref|YP_004651110.1| hypothetical protein PUV_03060 [Parachlamydia acanthamoebae UV-7]
gi|281499834|gb|EFB42123.1| hypothetical protein pah_c014o028 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478658|emb|CCB85256.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 393
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 34/185 (18%)
Query: 45 FRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWG 104
F+ P ++ + I+Q + R+ A H D HL++NM+ LI+ G+Q+E+ G G
Sbjct: 218 FQHPDTSWEFKAPMFEKIKQGEIWRVFTPALLHSDLFHLFFNMIWLIVIGKQIEQRIGKG 277
Query: 105 KFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDA- 163
K++ ++ VF++ L++ F +GFS +L AM + Q A
Sbjct: 278 KYILFILLTGVFSNTAQYLMSGSNF-------------LGFSGILCAMIAFIWVRQRHAA 324
Query: 164 ---YQ--------------QILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
YQ +L I + + FE+I + P + HLSG L+G
Sbjct: 325 WEGYQVQRATLGFILFFIMTMLGIQLISFA---FEVIQHTAISPGIANTAHLSGALLGYI 381
Query: 207 YTDTP 211
P
Sbjct: 382 LGKMP 386
>gi|383316417|ref|YP_005377259.1| hypothetical protein [Frateuria aurantia DSM 6220]
gi|379043521|gb|AFC85577.1| putative membrane protein [Frateuria aurantia DSM 6220]
Length = 205
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
D+ + A+ + R+Y RL+ H D H+++NM++L GR LE +G +++
Sbjct: 27 DLILWPPAISRSREYYRLVTYGLVHADVQHVFFNMLTLFFFGRALEPFFG------MIMG 80
Query: 113 LTVFTSLYYI---LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN 169
T F +L+YI +++ + Y+ N + C +G S + A+ LQP + +L
Sbjct: 81 ATGF-ALFYIGALVVSVLPSYLQNRNNPRYRC-LGASGAVSAVMFAFILLQPWSKIFVLF 138
Query: 170 INVKAI 175
I + AI
Sbjct: 139 IPLPAI 144
>gi|397612198|gb|EJK61641.1| hypothetical protein THAOC_17833 [Thalassiosira oceanica]
Length = 620
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 54/231 (23%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P+T ++ L + + + + V ++ + ++ R + A H + +H+ +NM
Sbjct: 111 PSTCAVMLLNVALAFHYWNRRVDPSSVSKQYARIVGEHEWWRGLTGATAHFEPLHIGFNM 170
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFL------TVFTSLYYILLAYIVFYITNDTSELSHC 141
+S+ G ++E G L+ V FL V+T++ I++A + I ++ C
Sbjct: 171 MSMNTLGSEIE-----GSLLNSVEFLMWNGALVVYTTM--IMMAMVYARIRYLQRKIDAC 223
Query: 142 ----------------------AIGFSAVLFAMKTILT--RLQPDAYQQILNINVKAIY- 176
++G+SAVLFA I T R QP LN + Y
Sbjct: 224 GNAQPQLQATYEEKQELLRDTSSVGYSAVLFAWMVISTMERKQPTCPIPFLNDVCFSTYE 283
Query: 177 -----------APWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGL 216
+P L + ++P SF GHL+GI+ G + WGL
Sbjct: 284 VPGLPFLRFNLSPIVSLFVCQFIMPRVSFMGHLAGIVAGFL-----LHWGL 329
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 34/193 (17%)
Query: 33 LVFLQSMVY--LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSL 90
L+F+ ++ L+ F P + +I ++ RLI S F HG H+++NM++L
Sbjct: 15 LIFIMMFLFGGLSAFSNPRIYILFGAQLGNLITAGEWFRLITSMFVHGGLFHIFFNMIAL 74
Query: 91 ILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI-GFSAVL 149
G +E+ YG +F+S+ + +F +L L ++ N S + AI G +L
Sbjct: 75 FYVGNIVERAYGKERFISIYMLSGIFGNLLTHL------FLPNAISVGASGAIFGLIGLL 128
Query: 150 FAMK------TILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFK--GHLSGI 201
F TIL + A I+ INV I+ +P A+ HL G+
Sbjct: 129 FGAGFRHDTPTILRPVTGTALLPIILINV------------IWGFLPGANINNFAHLGGL 176
Query: 202 LVGLTYTDTPIGW 214
+G T+ GW
Sbjct: 177 GIGFTF-----GW 184
>gi|408370452|ref|ZP_11168229.1| putative transmembrane rhomboid family protein [Galbibacter sp.
ck-I2-15]
gi|407744210|gb|EKF55780.1| putative transmembrane rhomboid family protein [Galbibacter sp.
ck-I2-15]
Length = 288
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
LI +F HG MHL++NM+ L GR I+ +F+SL I + L + LL+Y +F
Sbjct: 65 LITYSFFHGSFMHLFWNMLLLFFVGRFFLMIHPTKRFISLYILGAMAGGLLF-LLSYNIF 123
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ---ILNINVKAIYAPWFELIIIY 186
+ S ++ IG SA + A+ + P + ILN+ + I A L ++
Sbjct: 124 PV---FSGVNSSLIGASAAVMAVMIFVCTSMPHQEVKLFFILNVKLWYIGAALVLLDLVS 180
Query: 187 LLVPNASFK-GHLSGILVGLTYTD-----TPIGWGLDYVVDKCQEMINGEEQEDM 235
L N+ HL G L+G Y +G G+ ++D + + ++ M
Sbjct: 181 LPFSNSGGHLAHLGGALLGFVYAKKLQQGNDMGRGIYMIMDSVSSLFSKSKKAPM 235
>gi|237732716|ref|ZP_04563197.1| predicted protein [Mollicutes bacterium D7]
gi|229384211|gb|EEO34302.1| predicted protein [Coprobacillus sp. D7]
Length = 209
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI----FLTVF 116
V+ Y RLI + F H MH++ N SL+ G +E + G ++L ++I T+
Sbjct: 49 VLAGNQYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTIL 108
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ---PDAYQQILNINVK 173
+++YIL N S + G S +F + L L D Y + K
Sbjct: 109 PTVFYILTG-------NGASSIMG---GISGAIFGLMGALLALAWKFKDVYAYLF----K 154
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
I + +++I +LVP+ S GH+SG++ G T
Sbjct: 155 QISSSVLLMLLISILVPSISLSGHISGMIGGFIAT 189
>gi|404370657|ref|ZP_10975977.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
gi|226913215|gb|EEH98416.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
Length = 325
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 49 WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLS 108
++ + + + +I + RL+ SAF HG +H+++NM +L + GR++E +YG ++++
Sbjct: 166 YTLIQMGAKVNVLINSGEIYRLLTSAFLHGGIIHIFFNMSALNIIGREVEAVYGSKRYIA 225
Query: 109 LVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL 168
+ + + S +V Y+ S ++G S +F + + +I
Sbjct: 226 IYVISALGGS--------VVSYLFKPNS----ISVGASGAIFGLLGAMLIFGLKERDKIG 273
Query: 169 NINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+K I +II + +PN HL G+++G
Sbjct: 274 KQYMKNILETIGLNVIIGITIPNIDNFAHLGGLILG 309
>gi|260063472|ref|YP_003196552.1| transmembrane rhomboid family protein [Robiginitalea biformata
HTCC2501]
gi|88782916|gb|EAR14090.1| putative transmembrane rhomboid family protein [Robiginitalea
biformata HTCC2501]
Length = 291
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
L+ +F HG H+++NM+ L GR YG +F++ V FL V + L AY +F
Sbjct: 64 LVTYSFLHGGLFHIFFNMLMLYYVGRIFLNFYGPRRFIN-VYFLGVILGGAFFLAAYNIF 122
Query: 130 YI-TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ S L + G AVL + T L P ++ N+K Y F +++ +L
Sbjct: 123 PVFYQSQSPLIGASAGVMAVLIFVCTYL----PQQEVRLFFFNLKLWYIGAFFVLLDLVL 178
Query: 189 VPNASFKG----HLSGILVGLTYTDTP-----IGWGLDYVVDKCQEMINGEEQE 233
+P G HL G L+G Y +G G ++D + E++
Sbjct: 179 IPTGDNPGGRIAHLGGALLGYLYARRSAQGGDLGAGFSRMLDWFAGLFEKRERK 232
>gi|389775483|ref|ZP_10193424.1| hypothetical protein UU7_05868 [Rhodanobacter spathiphylli B39]
gi|388437299|gb|EIL94105.1| hypothetical protein UU7_05868 [Rhodanobacter spathiphylli B39]
Length = 202
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
D+ + A+ +QR+Y RL+ H D MHL +NMV+L GR +E +
Sbjct: 27 DLILWPPAITRQREYHRLVTYGVVHADAMHLLFNMVTLFFFGRAMESFFA 76
>gi|385809854|ref|YP_005846250.1| hypothetical protein IALB_1272 [Ignavibacterium album JCM 16511]
gi|383801902|gb|AFH48982.1| Hypothetical protein IALB_1272 [Ignavibacterium album JCM 16511]
Length = 267
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+LI F HG H+++NM +L + G ++E I G KFL +F + L ++ ++ ++
Sbjct: 36 QLITYQFMHGGFGHIFFNMFALWMFGAEVEYILGSKKFLIFYLFSGITAGLLHLFISPLL 95
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI-LNINVKAIYAPWFELIIIYL 187
S L+ IG S +F + T L PD Y + I VKA Y F ++ +L
Sbjct: 96 ------GSPLA-VTIGASGAVFGVMTAFAMLFPDRYIFLYFLIPVKAKYLIGFLIVFEFL 148
Query: 188 LVPNASFK----GHLSGILVGLTY 207
+ +A+ HL G L G +
Sbjct: 149 AIDSAASNVAHLAHLGGALFGFLF 172
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 24/148 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL+ +AF H + H+ NM+SL G +E + G +FL+L + V S
Sbjct: 80 VAEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGRARFLALYLIAAVGGS--- 136
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+A +F N S +G S +F + IL + V+A P+
Sbjct: 137 --VASYLFAAPNAAS------LGASGAIFGLF---------GATGILVLRVRADVRPFVA 179
Query: 182 LIIIYLLV----PNASFKGHLSGILVGL 205
L++I L++ N +++ H+ G++VG+
Sbjct: 180 LLVINLIITFGWSNIAWQAHIGGLVVGV 207
>gi|167756710|ref|ZP_02428837.1| hypothetical protein CLORAM_02248 [Clostridium ramosum DSM 1402]
gi|374627722|ref|ZP_09700124.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
gi|167702885|gb|EDS17464.1| peptidase, S54 family [Clostridium ramosum DSM 1402]
gi|373912961|gb|EHQ44804.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
Length = 214
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI----FLTVF 116
V+ Y RLI + F H MH++ N SL+ G +E + G ++L ++I T+
Sbjct: 49 VLAGNQYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTIL 108
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ---PDAYQQILNINVK 173
+++YIL N S + G S +F + L L D Y + K
Sbjct: 109 PTVFYILTG-------NGASSIMG---GISGAIFGLMGALLALAWKFKDVYAYLF----K 154
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
I + +++I +LVP+ S GH+SG++ G T
Sbjct: 155 QISSSVLLMLLISILVPSISLSGHISGMIGGFIAT 189
>gi|365832927|ref|ZP_09374453.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
gi|365259760|gb|EHM89743.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
Length = 214
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI----FLTVF 116
V+ Y RLI + F H MH++ N SL+ G +E + G ++L ++I T+
Sbjct: 49 VLAGNQYWRLISANFIHFGIMHIFCNCYSLVNLGSVMEYLLGMKRYLIILIASALATTIL 108
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ---PDAYQQILNINVK 173
+++YIL N S + G S +F + L L D Y + K
Sbjct: 109 PTVFYILTG-------NGASSIMG---GISGAIFGLMGALLALAWKFKDVYAYLF----K 154
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
I + +++I +LVP+ S GH+SG++ G T
Sbjct: 155 QISSSVLLMLLISILVPSISLSGHISGMIGGFIAT 189
>gi|389792719|ref|ZP_10195903.1| hypothetical protein UU9_01024 [Rhodanobacter fulvus Jip2]
gi|388435906|gb|EIL92795.1| hypothetical protein UU9_01024 [Rhodanobacter fulvus Jip2]
Length = 201
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 93/204 (45%), Gaps = 19/204 (9%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P TL ++ + +V FR P D+ + A+ +QR+Y RL+ H D HL +NM
Sbjct: 2 PITLIIIAITCVVSYLAFRNPRLMNDLILWPPAIARQREYYRLVTYGLVHADFGHLLFNM 61
Query: 88 VSLILKGRQLEKIYG--WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIG- 144
+L GR +E + G F V+F + ++ IL Y+ ND + S A G
Sbjct: 62 FTLFFFGRVMEGFFAQRLGSF-GFVLF-YIGGLVFSILPTYLKH--RNDPNYRSLGASGA 117
Query: 145 FSAVLFAMKTILTRLQPDAYQQILNINVKA---IYAPWFELIIIYL---LVPNASFKGHL 198
SAVLFA L P +Q+IL + V +YA + IY+ N + HL
Sbjct: 118 VSAVLFA----FILLAP--WQRILVLVVPMPAIVYAVLYTAYSIYMDRRGQGNVNHSAHL 171
Query: 199 SGILVGLTYTDTPIGWGLDYVVDK 222
G G+ +T G L Y +++
Sbjct: 172 WGAAYGVIFTLLMDGRVLPYFLNQ 195
>gi|404378219|ref|ZP_10983316.1| hypothetical protein HMPREF9021_00169 [Simonsiella muelleri ATCC
29453]
gi|294484089|gb|EFG31772.1| hypothetical protein HMPREF9021_00169 [Simonsiella muelleri ATCC
29453]
Length = 220
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 13/166 (7%)
Query: 55 CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT 114
+ A+ + + Y R I SAF H D MHL++NM +L R + +YG FL L +
Sbjct: 33 AFNVGAITRDKQYYRFITSAFLHADMMHLFFNMFTLYFFSRVIAAVYGVWLFLGLYLASV 92
Query: 115 VFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKA 174
+ + + L Y + + G S VLFA L LQ Y + +
Sbjct: 93 LAGNAFSFWL-----YQKRPSYTAIGASGGVSGVLFA-TVALAPLQ-TIYLYFIPVTSWI 145
Query: 175 IYAPWFELIIIYLLVP----NASFKGHLSGILVGLTYTD--TPIGW 214
+F + +L P N HL G + G+ + TPI +
Sbjct: 146 FATLYFAYSVAMMLKPRQGDNTGHSAHLGGAMCGMIFVAIFTPIAY 191
>gi|300781971|ref|YP_003762262.1| hypothetical protein AMED_0036 [Amycolatopsis mediterranei U32]
gi|384145172|ref|YP_005527988.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|399533854|ref|YP_006546515.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
gi|299791485|gb|ADJ41860.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340523326|gb|AEK38531.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|398314624|gb|AFO73571.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
Length = 266
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 14/151 (9%)
Query: 58 ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT 117
DA + ++ R++ + F H +H+ NM SL + GR LE++ G G+FL+L +
Sbjct: 74 GDATLGHGEWWRILTNGFLHYGPIHIAVNMFSLWMMGRSLEQVCGRGRFLALYFVSMLGA 133
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
S +L Y T S G +A+ + RL P L +N
Sbjct: 134 SASVLLFGNPGGY--PGTVGASGALFGLMGA-YAVTVLKLRLNPTGLIITLALNA----- 185
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
I +P S GH+ G++ G T
Sbjct: 186 ------FITFGIPGISIFGHIGGLVTGALVT 210
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I + RL+ + F H +HL NM +L + GR LE G +FL+L + L
Sbjct: 134 IADGQWYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYL----VAGLGG 189
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ--QILNINVKAIYAPW 179
+ AY++ T+ S G A LF + R+ D Q IL IN
Sbjct: 190 NVAAYLISAPNAATAGASTAIFGLFAALF---VVGRRMGRDVSQVLPILVIN-------- 238
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
++ L VP S GHL G+ VG
Sbjct: 239 ---LVFTLTVPGISIPGHLGGLAVG 260
>gi|23098073|ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831]
gi|22776298|dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
I +A I+ + RLI F HG MH+ +N SL+L G LE++ G KF
Sbjct: 49 IGFNAAIEAGQWWRLITPIFLHGGLMHMLFNSFSLVLFGPALEQMLGRFKF--------- 99
Query: 116 FTSLYYILLAYIVFYITNDTS-----ELSHCAIGFSAVLFAMKTI---LTRLQPDAYQQI 167
+LAY+ IT + + +S+ +G S +F + I + + D Q
Sbjct: 100 -------ILAYLGTAITANIAIFFLQPMSYAHLGASGAIFGLFGIYVFMVMYRKDLIDQS 152
Query: 168 LNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
+ + I +++ + PN S GHL G L G+ Y
Sbjct: 153 SSQMIAVIVGIG---LVMTFIRPNISILGHLFGFLSGIIYA 190
>gi|440717205|ref|ZP_20897696.1| glpG protein [Rhodopirellula baltica SWK14]
gi|436437672|gb|ELP31290.1| glpG protein [Rhodopirellula baltica SWK14]
Length = 329
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 50 STLDVCISADA--VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG-WGKF 106
S +D + DA I++ + RL+ AF HG MHL +NM++L G +E+++G W F
Sbjct: 170 SPIDYATTGDAWVSIKKGEIWRLVTPAFLHGSTMHLVFNMMALFTLGSVVERLHGSW--F 227
Query: 107 LSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT---ILTRLQPDA 163
L+ ++ ++ ++ IV + D E S A+G S +F + I R QP
Sbjct: 228 LASLLLVSH-------IIGMIVQVVLPDWLE-SPMAVGASGAVFGVFGFIWIRPRFQPSY 279
Query: 164 YQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
I NV + F + L+ + H+ G+L G+
Sbjct: 280 PVGIPPFNVYLMLG--FMFACMTPLIQGIANGAHVGGLLTGMA 320
>gi|405362758|ref|ZP_11025811.1| rhomboid family protein [Chondromyces apiculatus DSM 436]
gi|397090218|gb|EJJ21092.1| rhomboid family protein [Myxococcus sp. (contaminant ex DSM 436)]
Length = 243
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 20/146 (13%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+Q Y RL+ + EHG +HL +NM ++ G LE+ G +FL L + + S +
Sbjct: 79 AVQAGQYWRLLGAVLEHGGAIHLLFNMSVVVTLGFTLERGIGSLRFLGLSLVTALGASAF 138
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
++ + V T S +G++ AM + TR + + + W
Sbjct: 139 SLIFDFDV-----PTVGASGMILGWAG---AMLPVATR---EGRRDLFI---------WL 178
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLT 206
+ + L+P S+ GHL G L GL
Sbjct: 179 AQVAVLSLLPFVSWAGHLGGFLFGLP 204
>gi|408530693|emb|CCK28867.1| integral membrane protein [Streptomyces davawensis JCM 4913]
Length = 296
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 33/176 (18%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ V + + Y RL+ S F HG +HL +NM+SL G LE G ++L+L +
Sbjct: 125 EGVAEGQSY-RLLTSMFLHGSVIHLLFNMLSLWWLGGPLEAALGRARYLALYF----VSG 179
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQ--QILNINV 172
L LAY++ +E + +G S +F A ++ RL D +L IN+
Sbjct: 180 LAGSALAYLL-------AEPNTATLGASGAIFGLFGATAVLMRRLNYDMRPIIALLAINL 232
Query: 173 KAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMIN 228
++P F N S++ H+ G++ G+ IG+G+ + + + +I
Sbjct: 233 IFTFSPGF----------NISWQAHIGGLVAGVV-----IGYGMVHAPRERRALIQ 273
>gi|385680095|ref|ZP_10054023.1| membrane protein [Amycolatopsis sp. ATCC 39116]
Length = 256
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
A+ + ++ RL++S F H +HL NM++L + GR +E + G + FT L
Sbjct: 69 AIAGEDEWWRLVMSGFLHYGPIHLAVNMLALWILGRDMETLLGRVR----------FTVL 118
Query: 120 YYILL--AYIVFYITNDTSELSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKAIY 176
Y + L + Y+ + + A G +L AM + RL+ + I I +
Sbjct: 119 YLVSLLGGAVAVYLFDGVDRGTAGASGAIYGLLGAMLVAVIRLRLNPAYAIGTIVLN--- 175
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
+II + +PN S GHL G++VG T
Sbjct: 176 ------LIITVSLPNISLLGHLGGLVVGALVT 201
>gi|443670730|ref|ZP_21135859.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
gi|443416665|emb|CCQ14196.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
Length = 251
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 32 GLVFLQSMVYLNIFRKP----WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
G+ QS + F P WS V ++ D RLI S F H +HL NM
Sbjct: 40 GITAAQSGSITSNFNSPLAREWSLNSVLVA------NGDLFRLIGSGFVHIGPIHLLVNM 93
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSA 147
+L L GR +E I G ++L+ V FL++ + V + N + + +
Sbjct: 94 FALYLIGRDVELILGRSRYLA-VYFLSLLGG------SASVMVLENPLAATAGASGAVFG 146
Query: 148 VLFAMKTILTRLQ--PDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
+L A IL RL+ P I+ +N I I + +P+ S GH+ G++ G
Sbjct: 147 LLGAQAVILLRLKRSPAPVLIIIALN-----------IFISVSIPSISLWGHMGGLVAGA 195
Query: 206 TYT 208
T
Sbjct: 196 AVT 198
>gi|403385795|ref|ZP_10927852.1| hypothetical protein KJC30_13905 [Kurthia sp. JC30]
Length = 206
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 28/186 (15%)
Query: 28 PATLGLVFLQSMVYLN--IFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
PA L+ + +VY+ + R + +A+ +I +Y RL+ + F HG +H+
Sbjct: 16 PAVATLILINLIVYVIGLVPRINSYIFNYGAAANWLIGAGEYWRLVTAIFIHGGFLHILS 75
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
NM L + G +LEKI G +F IF+ + + + + Y V +L + ++G
Sbjct: 76 NMFWLYVFGPELEKIAGRARF----IFIFLMSGIIGNVATYFV-------QDLGYVSVGA 124
Query: 146 SAVLFAM------KTILTR-LQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHL 198
S +F M TR + P Q IL + + + +II L PN + H+
Sbjct: 125 SGAVFGMLGAYLALVYYTRHIFPQLRQMILPLVIIS--------VIITFLQPNVNATAHI 176
Query: 199 SGILVG 204
+G++ G
Sbjct: 177 AGLITG 182
>gi|419760008|ref|ZP_14286293.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
gi|407515047|gb|EKF49833.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
Length = 223
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++ + R++ S F HG +HL +NM +L GR +E +YG KFL+ + +
Sbjct: 44 LVSHGQWFRIVTSMFVHGGFIHLIFNMYALFFLGRIVENVYGTEKFLTFYFLSGIVGN-- 101
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
LA +FY + + S G VLFA + D + I A+ P
Sbjct: 102 ---LATQIFYYNSFSVGASGAIFGLIGVLFA-----AGFRKDTPYSLKPITGSAL-LPMI 152
Query: 181 ELIIIYLLVP--NASFKGHLSGILVGL 205
+ II+ ++P N + H+ G L G+
Sbjct: 153 VINIIFGIMPGTNINNAAHIGGFLTGM 179
>gi|392945858|ref|ZP_10311500.1| putative membrane protein [Frankia sp. QA3]
gi|392289152|gb|EIV95176.1| putative membrane protein [Frankia sp. QA3]
Length = 341
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV-FTSLYYILL 124
Y RL+ +AF H +H+ +NM +L L G QLE I G ++L L + V +L Y+L
Sbjct: 178 QYYRLLTAAFLHAGVLHILFNMYALYLLGFQLEAILGRARYLGLFVAGAVGGNTLSYLL- 236
Query: 125 AYIVFYITNDTSELSHCAIGFSAVLFAMKT----ILTRLQPDAYQQILNINVKAIYAPWF 180
LS ++G S +FA + I RL+ D+ Q ++ + + + F
Sbjct: 237 -----------GGLSTASVGASTAIFAFFSAYYVIARRLRVDSQQILIVLGINLLITFSF 285
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTYTDTP 211
I + G +G++VGL Y P
Sbjct: 286 SSIDKW-----GHLGGLAAGLIVGLIYAYVP 311
>gi|385303446|gb|EIF47519.1| rbd2p [Dekkera bruxellensis AWRI1499]
Length = 298
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 14/171 (8%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
D+ + D++ + RL + H HL++N++SL + E+ G ++
Sbjct: 54 DMALKPDSLFHISELPRLSSYVWXHSGFFHLFFNVLSLWAPLAEFERTNGTFHTALVLSI 113
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN- 171
L ++ Y LL + F T +G S +F++ + + + +++ + N
Sbjct: 114 LATAVAIPYCLLGXLFFPNT--------VVLGASGWVFSLISYFSYVNSLSHRTVKLFNS 165
Query: 172 --VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVV 220
V + P+ ++ ++L+VPN+S GH GI+ G GW ++ V
Sbjct: 166 WEVPTLSIPFIFMLTVFLMVPNSSLIGHFLGIVTGFLLAK---GWFINLTV 213
>gi|377572160|ref|ZP_09801257.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
gi|377530656|dbj|GAB46422.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
Length = 237
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +Y RL+ + F H MH+ NM+SL + GR LE G G++L++ + + S
Sbjct: 53 VAAGEYWRLLTAGFLHFSVMHVAVNMLSLYILGRDLELALGIGRYLAVYVIALLGGSAAV 112
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL--TRLQPDAYQQILNINVKAIYAPW 179
+L ND + + + ++ AM I+ R+ P I+ NV
Sbjct: 113 MLF-------ENDRALTAGASGAIYGLMGAMLVIILKARVSPVPVLLIIGFNV------- 158
Query: 180 FELIIIYLLVPNASFKGHLSGILVGLTYT 208
++ +P S GHL G++ G T
Sbjct: 159 ----VLSFSLPGISVLGHLGGLVFGAAAT 183
>gi|217077443|ref|YP_002335161.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
gi|217037298|gb|ACJ75820.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
Length = 223
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++ + R++ S F HG +HL +NM +L GR +E +YG KFL+ + +
Sbjct: 44 LVSHGQWFRIVTSMFVHGGFIHLIFNMYALFFLGRIVENVYGTEKFLTFYFLSGIVGN-- 101
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
LA +FY + + S G VLFA + D + I A+ P
Sbjct: 102 ---LATQIFYYNSFSVGASGAIFGLIGVLFA-----AGFRKDTPYSLKPITGSAL-LPMI 152
Query: 181 ELIIIYLLVP--NASFKGHLSGILVGL 205
+ II+ ++P N + H+ G L G+
Sbjct: 153 VINIIFGIMPGTNINNAAHIGGFLTGM 179
>gi|421615034|ref|ZP_16056072.1| glpG protein [Rhodopirellula baltica SH28]
gi|408494207|gb|EKJ98827.1| glpG protein [Rhodopirellula baltica SH28]
Length = 329
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 50 STLDVCISADA--VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG-WGKF 106
S +D + DA I++ + RL+ AF HG MHL +NM++L G +E+++G W F
Sbjct: 170 SPIDYATTGDAWVSIKKGEIWRLVTPAFLHGSTMHLVFNMMALFTLGSVVERLHGSW--F 227
Query: 107 LSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT---ILTRLQPDA 163
L ++ ++ ++ IV + D E S A+G S +F + I R QP
Sbjct: 228 LGSLLLVSH-------IIGMIVQVVLPDWLE-SPMAVGASGAVFGVFGFIWIRPRFQPSY 279
Query: 164 YQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
I NV + F + L+ + H+ G+L G+
Sbjct: 280 PVGIPPFNVYLMLG--FMFACMTPLIQGIANGAHVGGLLTGMA 320
>gi|168210042|ref|ZP_02635667.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
gi|170711841|gb|EDT24023.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
Length = 342
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 20/215 (9%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAV 61
R R ++ IL+ ++IL I LG F +++V +N W +A+
Sbjct: 141 KRLRCGKVTGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAK---HNNAI 197
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I +Y RL+ S F HG +HL +NM +L + G +E+IYG K+L++ + S++
Sbjct: 198 IFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIFS 257
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+ + ++ +G S +F + + +I V I
Sbjct: 258 LYFSPVM-------------GVGASGAIFGLLGAALVFAYNEKDRIGKALVTNIIVIILL 304
Query: 182 LIIIYLLVPN----ASFKGHLSGILVGLTYTDTPI 212
+ I L + N A F G ++G ++GL + + I
Sbjct: 305 NVFISLSMSNIDISAHFGGFIAGAILGLFFHNYKI 339
>gi|417304444|ref|ZP_12091465.1| glpG protein [Rhodopirellula baltica WH47]
gi|327539221|gb|EGF25844.1| glpG protein [Rhodopirellula baltica WH47]
Length = 340
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 50 STLDVCISADA--VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG-WGKF 106
S +D + DA I++ + RL+ AF HG MHL +NM++L G +E+++G W F
Sbjct: 181 SPIDYATTGDAWVSIKKGEIWRLVTPAFLHGSTMHLVFNMMALFTLGSVVERLHGSW--F 238
Query: 107 LSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT---ILTRLQPDA 163
L+ ++ ++ ++ IV + D E S A+G S +F + I R QP
Sbjct: 239 LASLLLVSH-------IIGIIVQVVLPDWLE-SPMAVGASGAVFGVFGFIWIRPRFQPSY 290
Query: 164 YQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
I NV + F + L+ + H+ G+L G+
Sbjct: 291 PVGIPPFNVYLMLG--FMFACMTPLIQGIANGAHVGGLLTGMA 331
>gi|168214465|ref|ZP_02640090.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|168216839|ref|ZP_02642464.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|422346116|ref|ZP_16427030.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
gi|170714094|gb|EDT26276.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|182381088|gb|EDT78567.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|373226738|gb|EHP49060.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
Length = 342
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAV 61
R R ++ IL+ ++IL I LG F +++V +N W +A+
Sbjct: 141 KRLRCGKVTGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAK---HNNAI 197
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
I +Y RL+ S F HG +HL +NM +L + G +E+IYG K+L++ + S++
Sbjct: 198 IFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIF 256
>gi|326432618|gb|EGD78188.1| hypothetical protein PTSG_09065 [Salpingoeca sp. ATCC 50818]
Length = 224
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 167 ILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
IL + V YA W EL++I ++ P +S GHL GILVGL Y
Sbjct: 14 ILGMRVPTKYAYWVELLVIQVIAPQSSLLGHLCGILVGLAY 54
>gi|429239375|ref|NP_588499.2| rhomboid family protease [Schizosaccharomyces pombe 972h-]
gi|395398460|sp|O74926.2|RBD2_SCHPO RecName: Full=Rhomboid protein 2
gi|347834486|emb|CAA21293.2| rhomboid family protease [Schizosaccharomyces pombe]
Length = 251
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG-WGKFLS 108
ST + +S ++Q+R +I H +H+ +N VSL+ Q EK G L
Sbjct: 39 STGVLSLSWIGLLQKRQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILV 98
Query: 109 LVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL 168
VI T+F + ++++ + F++ D ++ G S FA + P
Sbjct: 99 TVIPYTLFPGIMHLIVYH--FFLRKDYVSIA----GLSGWAFAFISASCVHSPQRLISFF 152
Query: 169 NI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
N+ ++ A P LI+ +LVP ASF GH SG ++G
Sbjct: 153 NLFSIPAYCFPIIYLIMTTILVPKASFIGHASGAVMG 189
>gi|333992831|ref|YP_004525445.1| serine protease [Mycobacterium sp. JDM601]
gi|333488799|gb|AEF38191.1| serine protease [Mycobacterium sp. JDM601]
Length = 264
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 23 ADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
A T P + GL+ L + ++ ++ + + AV + Y RL+ SAF H MH
Sbjct: 57 ASTTPVISYGLIALNVLAFIGQMSSHQLDSELVLWSPAVADGQLY-RLLTSAFLHYGAMH 115
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
L NM +L + G LE + G +F +L + + S+ LLA + T+ S
Sbjct: 116 LLLNMWALYVVGPPLEGLLGRSRFSALYLLSALGGSVTVYLLA----PLNTATAGASGAI 171
Query: 143 IG-FSAVLFAMKTILTRLQPDA--YQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
G F A L + RLQ D I+ IN ++ +P S++GH+
Sbjct: 172 FGLFGATLIVGR----RLQMDIGWVAAIIVIN-----------LVFTFTIPQISWQGHVG 216
Query: 200 GILVGL 205
G++ GL
Sbjct: 217 GLVTGL 222
>gi|124027302|ref|YP_001012622.1| uncharacterized membrane protein [Hyperthermus butylicus DSM 5456]
gi|123977996|gb|ABM80277.1| uncharacterized membrane protein [Hyperthermus butylicus DSM 5456]
Length = 477
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 23 ADTIPPATLGLVFLQSMVYLNIFRKP---WSTLDVCIS-------ADAVIQQRDYKRLIL 72
A P AT ++ + +VYL + P W T D +S A ++ R++
Sbjct: 30 APETPLATYAIIAINVLVYL-VTSAPTGFWQTTDEWVSRLGFVPAALLATPPSEFPRILT 88
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+ F H + +H+++NM L L GR +EK G ++L+L + + ++++ + Y+V
Sbjct: 89 AMFTHANLIHIFFNMYFLYLFGRAVEKTLGHWRYLALYLVSGIVAAVFHTVFMYVV 144
>gi|256831415|ref|YP_003160142.1| rhomboid family protein [Jonesia denitrificans DSM 20603]
gi|256684946|gb|ACV07839.1| Rhomboid family protein [Jonesia denitrificans DSM 20603]
Length = 292
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 21/143 (14%)
Query: 69 RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R + +A H H+ +NM +L + G QLE I G +F++L + + + +LLA
Sbjct: 120 RFVTAALLHSTTRYFHILFNMWALWVVGSQLELILGRARFITLYVLSAIGGHVAVVLLAS 179
Query: 127 IV---FYITNDTSELSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
V ++I T S G F A++ MK + L+ A ++ INV
Sbjct: 180 PVNESWFI--PTLGASGAVFGLFGALVPVMKRVGADLRGIAV--LIGINV---------- 225
Query: 183 IIIYLLVPNASFKGHLSGILVGL 205
++ +VPN S++GHL G+L G+
Sbjct: 226 -VLGFIVPNISWQGHLGGLLTGV 247
>gi|110799144|ref|YP_696141.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|168206356|ref|ZP_02632361.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
gi|169347261|ref|ZP_02866200.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|110673791|gb|ABG82778.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|169296657|gb|EDS78788.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|170662212|gb|EDT14895.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
Length = 342
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 12 ILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLI 71
IL+ ++IL I LG F +++V +N W +A+I +Y RL+
Sbjct: 151 ILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAK---HNNAIIFHGEYYRLV 207
Query: 72 LSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
S F HG +HL +NM +L + G +E+IYG K+L++ + S++
Sbjct: 208 TSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIF 256
>gi|375092943|ref|ZP_09739208.1| putative membrane protein [Saccharomonospora marina XMU15]
gi|374653676|gb|EHR48509.1| putative membrane protein [Saccharomonospora marina XMU15]
Length = 309
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 20/141 (14%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ RL+ S F H +H+ NM++L + GR LE + G +FL++ F S+ A
Sbjct: 140 EWWRLVTSGFLHFGLLHIGMNMLALWILGRDLELLLGKVRFLAV-----YFVSMLGGSAA 194
Query: 126 YIVFYITNDTSELSHCAI-GF-SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
F N + + AI G A+L A+ + RL P A I+ +NV
Sbjct: 195 VFAFGAVNTGTAGASGAIYGLMGAILVAVLRL--RLNPTAAIGIIVLNV----------- 241
Query: 184 IIYLLVPNASFKGHLSGILVG 204
++ + +P S GHL G++VG
Sbjct: 242 VLTISIPGISLLGHLGGLVVG 262
>gi|365827061|ref|ZP_09368936.1| hypothetical protein HMPREF0975_00719 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265470|gb|EHM95232.1| hypothetical protein HMPREF0975_00719 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 279
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
LD ++ V+ + R + +AF H + MHL +NM +L + G LE + G +F ++ +
Sbjct: 97 LDARLAFVPVVAAGEPWRFLTTAFLHANYMHLGFNMWALWVLGGSLEPVLGRWRFTAVYL 156
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN 171
+ S L++ DT +G S +F + + + Q+ +
Sbjct: 157 LSALGGSTAIYWLSW------PDTDAWGTMTVGASGAVFGLFSTMF-----VVQRRFGRD 205
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
I A +I L N S++GHL G++VG
Sbjct: 206 TSGIVALLAINAVISFLGANISWQGHLGGLIVG 238
>gi|352081808|ref|ZP_08952650.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|389796489|ref|ZP_10199541.1| hypothetical protein UUC_02216 [Rhodanobacter sp. 116-2]
gi|351682714|gb|EHA65810.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|388448413|gb|EIM04397.1| hypothetical protein UUC_02216 [Rhodanobacter sp. 116-2]
Length = 201
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P TL ++ + +V F+ D+ + A+ +QR+Y RL+ H D HL +NM
Sbjct: 2 PITLAIIAITCIVSFMAFKNSRLLNDLILWPPAIARQREYHRLVTYGLVHADFGHLLFNM 61
Query: 88 VSLILKGRQLEKIYG 102
++L GR +E +
Sbjct: 62 ITLFFFGRVMEGFFA 76
>gi|86743118|ref|YP_483518.1| rhomboid-like protein [Frankia sp. CcI3]
gi|86569980|gb|ABD13789.1| Rhomboid-like protein [Frankia sp. CcI3]
Length = 275
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 42 LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
N F ++ + + I+AD Y RL+ +AF H +H+ +NM +L L G QLE I
Sbjct: 93 FNRFTGDFAMIGIRIAAD-----DQYYRLLTAAFLHAGVLHILFNMYALYLLGFQLEAIL 147
Query: 102 GWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT----ILT 157
G ++L+L + L + Y+ D +S +G S +FA I
Sbjct: 148 GRARYLALFVAGA--------LGGNTLSYVLGDGFTVS---VGASTAIFAFFAAYYIIAR 196
Query: 158 RLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
RL+ D+ Q ++ + + + I N GHL G+ VG
Sbjct: 197 RLRVDSRQILIVLGIN---------LAITFSFSNIDKWGHLGGLAVG 234
>gi|18310434|ref|NP_562368.1| rhomboid family protein [Clostridium perfringens str. 13]
gi|18145114|dbj|BAB81158.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 342
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAV 61
R R ++ IL+ ++IL I LG F +++V +N W +A+
Sbjct: 141 KRLRCGKVTGILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAK---HNNAI 197
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
I +Y RL+ S F HG +HL +NM +L + G +E+IYG K+L++ + S++
Sbjct: 198 IFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIF 256
>gi|229818522|ref|YP_002880048.1| rhomboid family protein [Beutenbergia cavernae DSM 12333]
gi|229564435|gb|ACQ78286.1| Rhomboid family protein [Beutenbergia cavernae DSM 12333]
Length = 315
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 15/148 (10%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
A I + R + +AF HG +HL +NM +L + G LE++ G ++ +L + + S
Sbjct: 140 SAAIGEVQPYRFLSAAFLHGGLLHLAFNMYALWIVGGFLEQMLGRWRYAALFLLSAIGGS 199
Query: 119 LYYILLA-YIVFYITNDTSELSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKAIY 176
+ Y+LLA + T S G F+A++F +++ +A Q ++ I +
Sbjct: 200 VGYLLLADPLSRAWTIPVVGASGAVFGLFAAIVFVLRSTGR----NASQILVLIAIN--- 252
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVG 204
++I +VP +++ HL G++ G
Sbjct: 253 ------VVIGFVVPGIAWQAHLGGMVTG 274
>gi|182627147|ref|ZP_02954861.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
gi|177907465|gb|EDT70134.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
Length = 342
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 12 ILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLI 71
IL+ ++IL I LG F +++V +N W +A+I +Y RL+
Sbjct: 151 ILIGLNILAFLVCLIVATALGAGFFRNIVEMNPQILYWMGAK---HNNAIIFHGEYYRLV 207
Query: 72 LSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
S F HG +HL +NM +L + G +E+IYG K+L++ + S++
Sbjct: 208 TSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIF 256
>gi|422874373|ref|ZP_16920858.1| rhomboid family protein [Clostridium perfringens F262]
gi|380304681|gb|EIA16968.1| rhomboid family protein [Clostridium perfringens F262]
Length = 342
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAV 61
R R ++ IL+ ++IL I LG F +++V +N W +A+
Sbjct: 141 KRLRCGKVTGILIGLNILAFLVCLIVANALGAGFFRNIVEMNPQILYWMGAK---HNNAI 197
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
I +Y RL+ S F HG +HL +NM +L + G +E+IYG K+L++ + S++
Sbjct: 198 IFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERIYGAKKYLAIYFVSGIVASIF 256
>gi|126651489|ref|ZP_01723693.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
gi|126591742|gb|EAZ85838.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
Length = 207
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
+ I A+ ++Q+ ++ R+ + F H MH+++NM SL L G +LEKI G +F+++ +
Sbjct: 43 NYGIQANFLVQKGEWWRVFSAIFLHAGFMHVFFNMFSLYLFGPELEKIAGKARFITIYLV 102
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
+ + +A +FY + S+ ++G S +F +
Sbjct: 103 SGIVGN-----MATYIFY------DSSYASLGASGAIFGI 131
>gi|32472115|ref|NP_865109.1| glpG protein [Rhodopirellula baltica SH 1]
gi|32397487|emb|CAD72793.1| probable glpG protein [Rhodopirellula baltica SH 1]
Length = 340
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 18/163 (11%)
Query: 50 STLDVCISADA--VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG-WGKF 106
S +D + DA I++ + RL+ AF HG MHL +NM++L G +E+++G W F
Sbjct: 181 SPIDYATTGDAWVSIKKGEIWRLVTPAFLHGSTMHLVFNMMALFTLGSVVERLHGSW--F 238
Query: 107 LSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT---ILTRLQPDA 163
L ++ L ++ IV + D E S A+G S +F + I R QP
Sbjct: 239 LGSLL-------LASHIIGMIVQVVLPDWLE-SPMAVGASGAVFGVFGFIWIRPRFQPSY 290
Query: 164 YQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
I NV + F + L+ + H+ G+L G+
Sbjct: 291 PVGIPPFNVYLMLG--FMFACMTPLIQGIANGAHVGGLLTGMA 331
>gi|358462907|ref|ZP_09173011.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
gi|357071027|gb|EHI80658.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
Length = 400
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 32 GLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLI 91
G+ L +N F +S + V I+ D +Y RL+ +AF HG +H+ +NM +L
Sbjct: 203 GVPGLTGTSRINQFTIDYSLIGVKIALD-----DEYWRLVTAAFLHGSVLHILFNMYALF 257
Query: 92 LKGRQLEKIYGWGKFLSLVIFLTV-FTSLYYILLAYIVFYITNDTS 136
L G QLE + G ++L+L + +L Y++ F T+
Sbjct: 258 LLGTQLEAVLGRARYLALFFACAIGGNTLSYLMSGERTFSYGASTA 303
>gi|154422081|ref|XP_001584053.1| Clan S-, family S54, Rhomboid-like serine peptidase [Trichomonas
vaginalis G3]
gi|121918298|gb|EAY23067.1| Clan S-, family S54, Rhomboid-like serine peptidase [Trichomonas
vaginalis G3]
Length = 256
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I+ R++ +L S F H HL+ N+V + + +EK G V +V L Y
Sbjct: 49 IEIRNFWKLFTSPFVHSSFPHLFLNIVFIWQRFSHIEKRAGMAFLFMHVFLFSVLIGLTY 108
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKAIYAPWF 180
+ I+F + IG +++L A+ I ++L + Y +L I+V + P
Sbjct: 109 SGII-ILFSVAGCFGLYYKPVIGMTSILLALNVIESQLSSNPYSSLLGLIHVPTRWLPIA 167
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTY 207
I ++ + N S H+ + VG TY
Sbjct: 168 ISITYHIALSNVSTFAHICALTVGYTY 194
>gi|300123463|emb|CBK24735.2| Peptidase S54 [Blastocystis hominis]
Length = 398
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 38/190 (20%)
Query: 38 SMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQL 97
++++ ++ K +V +S +V+++ + R+I ++F H D +H V L L +
Sbjct: 125 ALIFFWLWDKNVDATEVAVSYSSVMEKGEVWRVITASFSHLDLLH-----VGLNLTACHI 179
Query: 98 EKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC----AIGFSAVLFAMK 153
I+ S+ ++L V T ++ L ++ D L H +G+S VLFA+
Sbjct: 180 AIIF------SINLWLVVMTQAVHLFLVWLA-----DKMNLEHGKSVWGLGYSCVLFALM 228
Query: 154 TIL-----TRLQPDAYQQILNI-------------NVKAIYAPWFELIIIYLLVPNASFK 195
T + T+ + Y ++ P+ L+++ L+VP +SF
Sbjct: 229 TTIILKGDTQCPVNLYGMCFPTYEFKLLPFPSTCTGIRINLYPFVLLVVMKLIVPISSFF 288
Query: 196 GHLSGILVGL 205
GHL+GILVG+
Sbjct: 289 GHLAGILVGI 298
>gi|373253330|ref|ZP_09541448.1| rhomboid family protein [Nesterenkonia sp. F]
Length = 219
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 30/145 (20%)
Query: 69 RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R++ SA H MH+ +NM++L + GR +E G ++LSL++ S+ + L
Sbjct: 48 RMLTSAVLHSPSSVMHIAFNMMALWVVGRTIEPAVGTWRYLSLLVLSAFGASVAVLFL-- 105
Query: 127 IVFYITNDTSELSHCAIGFSAVLFAMKTIL------TRLQPDAYQQILNINVKAIYAPWF 180
SE +G S +F + L T Q ++ IN+
Sbjct: 106 ---------SEPGTLTVGASGAVFGLFGALFVLLRSTGAQTGGIIALVGINMA------- 149
Query: 181 ELIIIYLLVPNASFKGHLSGILVGL 205
+ LVP S++GHL G++ GL
Sbjct: 150 ----VSFLVPGISWQGHLGGLVTGL 170
>gi|6648207|gb|AAF21205.1|AC013483_29 unknown protein [Arabidopsis thaliana]
Length = 384
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIG 144
++ VSL+ G+ LE ++G +FL + + T L + A ++YIT L G
Sbjct: 149 FSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRLEVYLYMPFAG 208
Query: 145 FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
F VL + + ++ PD Q+IL + +K A W I++ L + ++ F + L
Sbjct: 209 FHGVLAGLLVGIKQIIPD--QEILLLKIK---AKWLPSIMLILSIASSFFTLDSAAYLPT 263
Query: 205 LTYTDTPIGW-GLDYVVDKCQEMINGEEQEDMG 236
L + T +GW L Y+ + + + G+ +D
Sbjct: 264 LIF-GTYMGWLYLRYLQRRPETKLRGDPSDDFA 295
>gi|302531387|ref|ZP_07283729.1| predicted protein [Streptomyces sp. AA4]
gi|302440282|gb|EFL12098.1| predicted protein [Streptomyces sp. AA4]
Length = 320
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ R+ S F H +H+ N SL + GR LE+++G +FL+L F S++ A
Sbjct: 133 EWWRIFTSGFLHYGPIHIAANAFSLWMMGRALEQVFGKSRFLAL-----YFVSMFGASTA 187
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
++F N S + AI +A+ + RL P A ++N+ + A +
Sbjct: 188 VLLFDAPNRPSAGASGAIFGLLGSYAVIVLKLRLNPTAL--LINLVINA---------YV 236
Query: 186 YLLVPNASFKGHLSGILVG 204
+P S H+ G++ G
Sbjct: 237 TFTIPQISILAHVGGLVTG 255
>gi|18398108|ref|NP_566326.1| rhomboid protein-like protein [Arabidopsis thaliana]
gi|21537325|gb|AAM61666.1| unknown [Arabidopsis thaliana]
gi|25083369|gb|AAN72066.1| expressed protein [Arabidopsis thaliana]
gi|31711794|gb|AAP68253.1| At3g07950 [Arabidopsis thaliana]
gi|332641103|gb|AEE74624.1| rhomboid protein-like protein [Arabidopsis thaliana]
Length = 304
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIG 144
++ VSL+ G+ LE ++G +FL + + T L + A ++YIT L G
Sbjct: 69 FSTVSLLFMGKFLEPVWGSTEFLKFIFVVNFLTYLCVFVTAIALYYITRLEVYLYMPFAG 128
Query: 145 FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
F VL + + ++ PD Q+IL + +K A W I++ L + ++ F + L
Sbjct: 129 FHGVLAGLLVGIKQIIPD--QEILLLKIK---AKWLPSIMLILSIASSFFTLDSAAYLPT 183
Query: 205 LTYTDTPIGW-GLDYVVDKCQEMINGEEQEDMG 236
L + T +GW L Y+ + + + G+ +D
Sbjct: 184 LIF-GTYMGWLYLRYLQRRPETKLRGDPSDDFA 215
>gi|6325010|ref|NP_015078.1| Rbd2p [Saccharomyces cerevisiae S288c]
gi|74583829|sp|Q12270.1|RBD2_YEAST RecName: Full=Rhomboid protein 2
gi|1061243|emb|CAA91598.1| putative protein [Saccharomyces cerevisiae]
gi|1370507|emb|CAA97967.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285815299|tpg|DAA11191.1| TPA: Rbd2p [Saccharomyces cerevisiae S288c]
gi|392296043|gb|EIW07146.1| Rbd2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 262
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 27 PPATL--GLVFLQSMVYLNIF----RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDD 80
PPA L GLV + +YL F R+ D+ ++ +++ + + RL L H
Sbjct: 13 PPAALTTGLVVFLTAIYLLSFIFALRE-----DLSLAPESLFKLQ-MSRLSLYPLIHLSL 66
Query: 81 MHLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE 137
HL +N++++ E+ +G G FL+L +F + Y LL +++
Sbjct: 67 PHLLFNVLAIWAPLNLFEETHGTVYTGVFLNLS---ALFAGILYCLLGKLLY-----PEA 118
Query: 138 LSHCAIGFSAVLFAMKTIL-TRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
L A G+ LFA + ++++P + ++ +Y P L+ I +++P +SF G
Sbjct: 119 LVAGASGWCFTLFAYYSFKESQIRPRTRIFRTDYSIPTLYTPLVLLVAIAVVIPGSSFWG 178
Query: 197 HLSGILVG--LTYTD------TPIGWGLDYVVDKCQEMING 229
H G+ VG + Y + TP GW ++ K ++ ++G
Sbjct: 179 HFFGLCVGYAIGYKESWFNKITPPGW----IITKIEKSLDG 215
>gi|108760756|ref|YP_632796.1| rhomboid family protein [Myxococcus xanthus DK 1622]
gi|108464636|gb|ABF89821.1| rhomboid family protein [Myxococcus xanthus DK 1622]
Length = 217
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 20/144 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+Q Y RL+ + EHG +HL +NM ++ G LE+ G +F L + + S +
Sbjct: 54 VQAGQYWRLLGAVLEHGSPLHLLFNMSVVVTLGFTLERGIGSLRFFGLSLVTALGASTFS 113
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
++ + V T S +G++ AM + TR + + + W
Sbjct: 114 LIFDFDV-----PTVGASGMILGWAG---AMLPVATR---EGRRDLFI---------WLA 153
Query: 182 LIIIYLLVPNASFKGHLSGILVGL 205
+ + L+P S+ GHL G L GL
Sbjct: 154 QVAVLSLLPFVSWAGHLGGFLFGL 177
>gi|449303984|gb|EMC99991.1| hypothetical protein BAUCODRAFT_30429 [Baudoinia compniacensis UAMH
10762]
Length = 286
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 24/200 (12%)
Query: 26 IPPATLGLVFLQSMVYL-NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
+P AT ++FL + Y+ ++F + I + I+ RL F H + +H
Sbjct: 31 LPLATRAVLFLLTAFYVAHLFAPALTHWGALIPQE--IRLDTLYRLNTYPFLHRNILHFA 88
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL---YYILLAYIVFYITNDTSELSHC 141
N +L+ + E +G ++ ++F +F +L Y LL VF+ L+
Sbjct: 89 LNCFALLPLLERFEAEHG--TVVTFILFTGMFGTLPGSLYTLLERYVFH-------LNGA 139
Query: 142 AIGFSAVLFAM--KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
A+G S +F + + + + Y ++ + + P F +++I LVP+ SF GH+
Sbjct: 140 AVGASVWVFLLLANEAVKTYRSNPYFELAGVKIPTWTTPIFFILVINFLVPHTSFLGHMC 199
Query: 200 GILVGLTYTDTPIGWGLDYV 219
G VG WGL Y+
Sbjct: 200 GAAVGYL-------WGLGYI 212
>gi|441509684|ref|ZP_20991598.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
gi|441446200|dbj|GAC49559.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
Length = 230
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 18/152 (11%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +Y RL+ + F H H+ NM+SL + GR LE G G++L +V F+ +F
Sbjct: 49 VANGEYWRLLTAGFLHFTVAHIALNMISLYILGRDLEAALGLGRYL-MVYFVALFGGSAA 107
Query: 122 ILLAYIVFYITNDTSELSHCAI-GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
++L F N S + AI G + + + R+ P I+ IN
Sbjct: 108 VML----FEAGNVRSAGASGAIYGLMGAVLVV-VLKARVSPTGVITIIVIN--------- 153
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
++ + +P S H+ G++ G T I
Sbjct: 154 --LVFSVTMPGISLAAHVGGLVFGAAATAAII 183
>gi|212224193|ref|YP_002307429.1| integral membrane protein [Thermococcus onnurineus NA1]
gi|212009150|gb|ACJ16532.1| integral membrane protein [Thermococcus onnurineus NA1]
Length = 202
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 23/161 (14%)
Query: 52 LDVCISADAVIQQRDYK-------RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWG 104
+D+ I A I Q +Y +L + F H +H+ +NM L++ G QLE+++G G
Sbjct: 36 IDISIEVLARIGQWNYAVLNGAWWQLFTAMFVHVGILHIVFNMYFLLMLGSQLERLFG-G 94
Query: 105 KFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAY 164
+ L VFT L L+ +V + +S A S LF + +L +
Sbjct: 95 RVL-------VFTYLAAGLVGNLVTLFLLPPNSISAGA---SGALFGIVGVLIMV----- 139
Query: 165 QQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
IL N+++++ F L +I + P + HL G++ G+
Sbjct: 140 SGILGGNIQSVFVNAFILFLINSMFPGVNAYAHLGGLITGI 180
>gi|255325720|ref|ZP_05366816.1| rhomboid family protein [Corynebacterium tuberculostearicum SK141]
gi|255297214|gb|EET76535.1| rhomboid family protein [Corynebacterium tuberculostearicum SK141]
Length = 217
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYIT 132
SAF H D HL NM+ L+L GR++E+ G G +L+ + + S +
Sbjct: 65 SAFMHLDAGHLAVNMIMLVLIGREVERALGTGLYLAAYLISCLGASAMIL---------- 114
Query: 133 NDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNA 192
T + +G S LFA+ +L AY+Q ++++A A ++ L
Sbjct: 115 --TFDFETPTVGASGALFALMAMLV----GAYRQ-RGLDLRAPIALVLANVVYTFLADGV 167
Query: 193 SFKGHLSGILVGLT-----YTDTP-IGWG 215
S GHL G+ G+ Y +P + WG
Sbjct: 168 SLWGHLGGLCTGIVLSLFLYRKSPTLRWG 196
>gi|254566099|ref|XP_002490160.1| Possible rhomboid protease, has similarity to eukaryotic rhomboid
proteases including Pcp1p [Komagataella pastoris GS115]
gi|238029956|emb|CAY67879.1| Possible rhomboid protease, has similarity to eukaryotic rhomboid
proteases including Pcp1p [Komagataella pastoris GS115]
gi|328350561|emb|CCA36961.1| rhomboid family protein [Komagataella pastoris CBS 7435]
Length = 258
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 16/193 (8%)
Query: 18 ILHLGADTIPPATLGLV-FLQSMVYLNIFRKPWSTLDVCISADA-VIQQRDYKRLILSAF 75
+ HLG P GLV FL S + +F ++L ++ D + + ++ L
Sbjct: 15 LFHLGGKYPPALVSGLVIFLISFYIVGVF----TSLRSSLALDPWALYHLNLNKISLYPL 70
Query: 76 EHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDT 135
H +HL++N+ +LI E+ G ++ L V T+L Y +L + F +
Sbjct: 71 VHSSFLHLFFNIFALISPLSLYERSNGTVHTGVVLNVLAVVTALPYCVLGMVFFPKVS-- 128
Query: 136 SELSHCAIGFSAVLFAMKTILTRLQPDAYQ--QILNINVKAIYAPWFELIIIYLLVPNAS 193
+G SA F+ + LQ +Y ++ + + I P+ L+ L+ P +S
Sbjct: 129 ------VVGASAWCFSFFGYYSYLQSLSYPTFKVQDYEIPTIATPFILLVASALIFPGSS 182
Query: 194 FKGHLSGILVGLT 206
F GHL G+L G
Sbjct: 183 FIGHLLGLLSGFA 195
>gi|256425736|ref|YP_003126389.1| rhomboid family protein [Chitinophaga pinensis DSM 2588]
gi|256040644|gb|ACU64188.1| Rhomboid family protein [Chitinophaga pinensis DSM 2588]
Length = 280
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
D ++ ++DYKRLI S F H MHL++NMVSL L LE G +L+L V +
Sbjct: 37 DRILIEKDYKRLITSGFLHVSWMHLFFNMVSLFLFSNSLEVKLGPTAYLTLYFASLVGGN 96
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFS----AVLFAMKTILTRLQPDAYQQILNINVKA 174
L +L+ + + A+G S V+FA + ++ + +I A
Sbjct: 97 LLSLLI---------HRNHGDYSAVGASGAVCGVIFASIALFPAMRLGFFGIPFSIPGWA 147
Query: 175 IYAPWFELIIIYLLVP---NASFKGHLSGILVGLT 206
Y F L IY + N + H+ G L+G+
Sbjct: 148 -YGSLFVLYSIYGIKSRRDNIGHEAHMGGALIGMV 181
>gi|260951065|ref|XP_002619829.1| hypothetical protein CLUG_00988 [Clavispora lusitaniae ATCC 42720]
gi|238847401|gb|EEQ36865.1| hypothetical protein CLUG_00988 [Clavispora lusitaniae ATCC 42720]
Length = 269
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYILLAYIVFYI 131
F H + H N+V+L + E+ +G G L+L L V T+L Y ++ ++
Sbjct: 61 FPHVNIFHWLINIVTLFPLLSRYERFHGTVYTGVTLNL---LAVVTALQYCVVGLFLY-- 115
Query: 132 TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN-------VKAIYAPWFELII 184
S G S + F+ T + + I+++N V IY P+F L +
Sbjct: 116 ------PSDAVAGLSGICFSFLTYFCYKEHEMKPVIMSLNFAGHELQVPTIYFPFFNLFL 169
Query: 185 IYLLVPNASFKGHLSGILVG 204
I L++P+ SF GHL+GI G
Sbjct: 170 IALIIPSTSFFGHLAGIGAG 189
>gi|443326975|ref|ZP_21055612.1| putative membrane protein [Xenococcus sp. PCC 7305]
gi|442793404|gb|ELS02854.1| putative membrane protein [Xenococcus sp. PCC 7305]
Length = 203
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 20/200 (10%)
Query: 30 TLGLVFLQSMVYLNIFRKPWST-------LDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
T L+F+ +V++ R ST L +S + I+Q ++ RLI + F H H
Sbjct: 12 TFILIFVNLVVFILEMRSGGSTDLPTLYRLGALVSEN--IKQGEWWRLINANFLHFGWFH 69
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
L NM++L G +E G ++L + + + L + LLA N T ++
Sbjct: 70 LISNMLALFFIGSIVELSIGVERYLIVYLLSGTGSMLTFALLA-------NYTGQVQVVL 122
Query: 143 IGFSAVLFA-MKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL---VPNASFKGHL 198
+G SA + + T+LT D + ++ K + F +++ ++L +PN SF HL
Sbjct: 123 MGASAAIMGTIGTMLTTSLADWLEYRTSLKAKRLQTVIFVVVLQFILDNIIPNVSFYSHL 182
Query: 199 SGILVGLTYTDTPIGWGLDY 218
G ++G + + W +
Sbjct: 183 FGFIIGFVVSLILMRWKFSF 202
>gi|255719446|ref|XP_002556003.1| KLTH0H02816p [Lachancea thermotolerans]
gi|238941969|emb|CAR30141.1| KLTH0H02816p [Lachancea thermotolerans CBS 6340]
Length = 284
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 23/190 (12%)
Query: 24 DTIPPATL--GLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQR-------DYKRLILSA 74
D PPA L GLV S++YL L + + + I + D RL L
Sbjct: 28 DGKPPAALTTGLVIFMSLIYL---------LSLVVDINGHISLKPNALFKLDLNRLSLYP 78
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
H HL N +SL E+ +G ++ L VFT++ Y L+ + F T
Sbjct: 79 LGHLSLTHLVLNSLSLFGPLTMFERSHGTVHTGVVLNLLAVFTAIVYCLMGSLFFSKTEV 138
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
C F+ F TI R Q + + + Y P L+++ + P +SF
Sbjct: 139 LGSSGWCFSLFAYFSFKEATI--RPQQRIFH---SFSAPTKYMPVLILVLVTIFFPGSSF 193
Query: 195 KGHLSGILVG 204
GH G+ +G
Sbjct: 194 WGHFIGMGMG 203
>gi|190348169|gb|EDK40578.2| hypothetical protein PGUG_04676 [Meyerozyma guilliermondii ATCC
6260]
Length = 291
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVF 116
I + + R+ + H H + N++SL + EK++G G L+L L V
Sbjct: 74 GAIFKLELNRISMYPLAHTGIFHWFVNVISLSPLLARFEKVHGTVYTGITLNL---LAVS 130
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLF-AMKTILTRLQPDAYQQILNINVKAI 175
T+L Y LLA I I+ T AI FS + F A+K P A+Q +
Sbjct: 131 TALIYSLLAGI---ISPSTRVEGLSAICFSFLEFYALKE--QSYYPIAFQWGDRYRLPTK 185
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVG 204
Y+ + LII ++LVPN+S GHL+GI G
Sbjct: 186 YSAFVVLIITFILVPNSSLLGHLAGIGSG 214
>gi|383809416|ref|ZP_09964936.1| peptidase, S54 family [Rothia aeria F0474]
gi|383447768|gb|EID50745.1| peptidase, S54 family [Rothia aeria F0474]
Length = 257
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 27 PPATLGLVFLQSMVYLNIFRKP--WSTLDVCISADAVIQQRDYKRLILSAFEHG--DDMH 82
P T L+ + +VYL + P W + AD V +Y R I S F H D H
Sbjct: 73 PNITYTLIGINVVVYLLQWIIPNYWVYNEFAYKADWVAYSHEYYRAITSGFLHSQNDPSH 132
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA 142
L NMVSL L G +EK+ G ++ L+++LT IL ++ + + +
Sbjct: 133 LLLNMVSLYLFGAAIEKMIGNWRY--LLVYLTA------ILGGSAAVWVLEPHAVVVGAS 184
Query: 143 IGFSAVLFAMKTILTRLQP-DAYQQILN-INVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
G ++ A TI+ L+ D + ++ I V IY ++P S++ HL G
Sbjct: 185 GGIFGLMGAYLTIMVALKERDNVRSVMVLIGVNVIYG---------FIMPGISWQAHLGG 235
Query: 201 ILVGLTYT 208
+ G T
Sbjct: 236 FIAGAIAT 243
>gi|312137531|ref|YP_004004867.1| serine peptidase [Rhodococcus equi 103S]
gi|311886870|emb|CBH46178.1| putative serine peptidase [Rhodococcus equi 103S]
Length = 321
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 49 WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLS 108
W LD + + Q + R+I S F H +HL NM +L + GR E + G ++L+
Sbjct: 131 WMVLD-----SSAVAQGELFRVIGSGFLHFGLIHLAVNMFALWVLGRDTEIVLGRSRYLA 185
Query: 109 LVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL 168
V +++ L+ F T S +G AVL L R++ A +
Sbjct: 186 -VYLISLLGGSASALMFESPFAFTAGASGAIFGIMGAQAVL------LLRMRRSATPVLT 238
Query: 169 NINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
I + ++I L VP S GHL G++ G T
Sbjct: 239 VIGIN---------VVISLTVPGISLWGHLGGLVAGAAAT 269
>gi|15643350|ref|NP_228394.1| hypothetical protein TM0584 [Thermotoga maritima MSB8]
gi|418045242|ref|ZP_12683338.1| Rhomboid family protein [Thermotoga maritima MSB8]
gi|4981102|gb|AAD35669.1|AE001733_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678324|gb|EHA61471.1| Rhomboid family protein [Thermotoga maritima MSB8]
Length = 235
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ D+ RLI + F HG +H+ +N +L G +E IYG KFL F + +
Sbjct: 49 VDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGN--- 105
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
LA VFY + S G +LFA + P + + +++ P
Sbjct: 106 --LATHVFYHDTISVGASGAIFGLIGILFAAG--FRKDTPFFMKPVTGVSL----LPIIL 157
Query: 182 LIIIYLLVP--NASFKGHLSGILVG--LTYTDTPIGW 214
+ ++Y +P N + HL G L G L YT +P W
Sbjct: 158 INVVYGFLPGTNINNAAHLGGFLSGMLLGYTMSPFSW 194
>gi|255534977|ref|YP_003095348.1| hypothetical protein FIC_00833 [Flavobacteriaceae bacterium
3519-10]
gi|255341173|gb|ACU07286.1| hypothetical protein FIC_00833 [Flavobacteriaceae bacterium
3519-10]
Length = 218
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF 116
+ A++Q+++Y RLI + F HGD MHL +NM++L G + + +G FL + + VF
Sbjct: 32 NVGAILQRKEYVRLISAGFLHGDMMHLLFNMMTLYFFGPIVLEAFGALGFLVVYLGSIVF 91
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAI--GFSAVLFAMKTILTRLQPDAYQQILNINVKA 174
+++ + Y+ + S S G S +LFA ++ L + + I
Sbjct: 92 GNVFSL-------YLYKNQSWYSAIGASGGVSGILFASIAMIPDLGIYFFFIPIAIPGYI 144
Query: 175 IYAPWFELIIIYLLVP----NASFKGHLSGILVGLTYT 208
+F + +L P N HL G GL Y
Sbjct: 145 FGFLYFAYSVYMMLNPREGDNIGHAAHLGGAFFGLVYA 182
>gi|71276309|ref|ZP_00652587.1| Rhomboid-like protein [Xylella fastidiosa Dixon]
gi|170730512|ref|YP_001775945.1| hypothetical protein Xfasm12_1387 [Xylella fastidiosa M12]
gi|71162917|gb|EAO12641.1| Rhomboid-like protein [Xylella fastidiosa Dixon]
gi|71729933|gb|EAO32028.1| Rhomboid-like protein [Xylella fastidiosa Ann-1]
gi|167965305|gb|ACA12315.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 202
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 63/138 (45%), Gaps = 25/138 (18%)
Query: 44 IFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG- 102
+FR P A+ + R Y RLI F H D HL +NMV+L G +E + G
Sbjct: 28 VFRPP-----------AIDRDRQYDRLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGE 76
Query: 103 -WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE--LSHCAIG-FSAVLFAMKTILTR 158
G L+ +F L +L++ + YI N + LS A G SAVLFA
Sbjct: 77 LTGSLLTYPLFY-----LGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAA----VL 127
Query: 159 LQPDAYQQILNINVKAIY 176
LQP A +L I AI+
Sbjct: 128 LQPWALIVVLFIPAPAIF 145
>gi|227549462|ref|ZP_03979511.1| S54 family peptidase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078461|gb|EEI16424.1| S54 family peptidase [Corynebacterium lipophiloflavum DSM 44291]
Length = 197
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ RL+ + F H D HL+ NM+ L+L G ++E+ G +F+ + T+ +S + +A
Sbjct: 60 GWLRLLTAGFLHLDLSHLFVNMLMLVLIGGEIERFIGTARFVVAWVVGTLASSAAVLAMA 119
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ DT G S LFA+ +L + AY++ + +++A A +
Sbjct: 120 F-------DTPT-----AGASGALFALLAVLVAI---AYRR--SSDLRAPIALLVLNVAF 162
Query: 186 YLLVPNASFKGHLSGILVGLTYTDTPIGWGLDY 218
+ P S GHL G+ G+ + W L Y
Sbjct: 163 TFIAPGVSVWGHLGGLAAGIL-----LAWPLTY 190
>gi|379706281|ref|YP_005261486.1| putative membrane-bound rhomboid protease [Nocardia cyriacigeorgica
GUH-2]
gi|374843780|emb|CCF60842.1| putative membrane-bound rhomboid protease [Nocardia cyriacigeorgica
GUH-2]
Length = 247
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ D+ R+I S F H +HL NM +L + GR +E + G ++L++ + SL
Sbjct: 72 VADGDWVRVIGSGFLHYGPIHLLLNMFALYVVGRDIELVLGRSRYLAVYL-----VSLLG 126
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
A +VF + T+ S G A+ IL RL+ +A + I +
Sbjct: 127 GSAAVMVFSQDSLTAGASGAVYGL---FGAITVILIRLRQNATNMFIIIGIN-------- 175
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYT 208
+ I +P S GHL G+ G T
Sbjct: 176 -VFISFSLPGISLFGHLGGLAAGTLAT 201
>gi|340356603|ref|ZP_08679245.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
gi|339620530|gb|EGQ25099.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
Length = 202
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
I + +I +Y RL+ F HG HL +NM SL + G +LEKI G +F+++ + +
Sbjct: 46 IGDNFLIANGEYWRLVTPMFLHGGLTHLLFNMFSLFIFGPELEKIAGKARFITIYMLAGL 105
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
F + L + + + F A+++ K + +L+ Q IL I V ++
Sbjct: 106 FGDVATYFLQSGDYRHLGASGAIFGVFGAFGALVYYTKHVFPQLK----QVILPIIVISV 161
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVGLTYTD 209
+ I A G ++G L+GL+Y +
Sbjct: 162 VMTFVGTNI----NVTAHIAGLITGFLIGLSYFN 191
>gi|288931169|ref|YP_003435229.1| rhomboid family protein [Ferroglobus placidus DSM 10642]
gi|288893417|gb|ADC64954.1| Rhomboid family protein [Ferroglobus placidus DSM 10642]
Length = 260
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+L+ S F HG H N + L+ G +LE+ G ++L + + +++YIL +
Sbjct: 111 QLVTSIFLHGSFDHYLVNAIVLLFFGGELERRLGSKRYLEIFFLSGIVGNIFYILFS--- 167
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ---ILNINVKA---IYAPWFEL 182
+ TN+ + A+G S L+ + L + P+ ++ +++K ++A + L
Sbjct: 168 -FATNNFAP----AVGASGALYGIMGALALIAPEIRVLLFFVIPVDIKTAILLFAAYNIL 222
Query: 183 IIIYLLVPNASFKGHLSGILVGLTY 207
++ + ++ HL G+LVGL Y
Sbjct: 223 MLPFTAFTGVAYIAHLGGLLVGLYY 247
>gi|151942556|gb|EDN60902.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190407719|gb|EDV10984.1| rhomboid protease [Saccharomyces cerevisiae RM11-1a]
gi|207340765|gb|EDZ69014.1| YPL246Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270648|gb|EEU05813.1| Rbd2p [Saccharomyces cerevisiae JAY291]
gi|259149911|emb|CAY86714.1| Rbd2p [Saccharomyces cerevisiae EC1118]
gi|323302636|gb|EGA56442.1| Rbd2p [Saccharomyces cerevisiae FostersB]
gi|323306904|gb|EGA60188.1| Rbd2p [Saccharomyces cerevisiae FostersO]
gi|323335253|gb|EGA76542.1| Rbd2p [Saccharomyces cerevisiae Vin13]
gi|323346079|gb|EGA80369.1| Rbd2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581576|dbj|GAA26733.1| K7_Rbd2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762680|gb|EHN04213.1| Rbd2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 262
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 27 PPATL--GLVFLQSMVYLNIF----RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDD 80
PPA L GLV + +YL F R+ D+ ++ +++ + + RL L H
Sbjct: 13 PPAALTTGLVVFLTAIYLLSFIFALRE-----DLSLAPESLFKLQ-MSRLSLYPLIHLSL 66
Query: 81 MHLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE 137
HL +N++++ E+ +G G FL+L +F + Y LL +++
Sbjct: 67 PHLLFNVLAIWAPLNLFEETHGTVYTGVFLNLS---ALFAGILYCLLGKLLY-----PEV 118
Query: 138 LSHCAIGFSAVLFAMKTIL-TRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
L A G+ LFA + ++++P + ++ +Y P L+ I +++P +SF G
Sbjct: 119 LVAGASGWCFTLFAYYSFKESQIRPRTRIFRTDYSIPTLYTPLVLLVAIAVVIPGSSFWG 178
Query: 197 HLSGILVG--LTYTD------TPIGWGLDYVVDKCQEMING 229
H G+ VG + Y + TP GW ++ K ++ ++G
Sbjct: 179 HFFGLCVGYAIGYKESWFNKITPPGW----IITKIEKSLDG 215
>gi|399524860|ref|ZP_10765362.1| peptidase, S54 family [Atopobium sp. ICM58]
gi|398373815|gb|EJN51650.1| peptidase, S54 family [Atopobium sp. ICM58]
Length = 292
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
++ AF HG H+ +NM+SL GR +E G +FL+L + + S A+I+
Sbjct: 115 VLTGAFLHGGITHILFNMLSLYWVGRAIEPAMGRWRFLALYLVSALGGS------AFIIA 168
Query: 130 YITNDTSELSHCAIGFSAV---LFAMKTILTRLQPDAYQQILN-INVKAIYAPWFELIII 185
+ SE+ +G S LF +L RL IL + + +Y
Sbjct: 169 WCLIQPSEIFVSTVGASGAVFGLFGAVFVLQRLGGSDTTVILTLLGINLVYG-------- 220
Query: 186 YLLVPNASFKGHLSGILVGLTYT 208
+V S++GH+ G + G+ T
Sbjct: 221 -FMVSGISWQGHIGGAIAGVAAT 242
>gi|410867339|ref|YP_006981950.1| Peptidase, S54 family protein [Propionibacterium acidipropionici
ATCC 4875]
gi|410823980|gb|AFV90595.1| Peptidase, S54 family protein [Propionibacterium acidipropionici
ATCC 4875]
Length = 229
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDM-HLYY 85
P T L+ + +++L P + +SA A + + R + SAF H ++ H+ +
Sbjct: 10 PVVTWTLIGVCVLIWLGELAIPGFINTIALSAAA--GKTEPWRFLTSAFAHSTNITHIGF 67
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
NM +L GR LE+ G G+FL+ + + ++++A Y + +G
Sbjct: 68 NMFALWSLGRVLERFLGRGRFLATYLLSALAGGALFVVMAAGTEYGSAVIPGWYDGVVGA 127
Query: 146 SAVLFAM-KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
S +F + T+L Q+ L + ++++ + + +P+ +++ H+ G +VG
Sbjct: 128 SGAIFGLFGTLLV------VQRRLGGSTRSLWMVLILNVALVFFIPDIAWQAHVGGFIVG 181
>gi|270307582|ref|YP_003329640.1| rhomboid [Dehalococcoides sp. VS]
gi|270153474|gb|ACZ61312.1| rhomboid [Dehalococcoides sp. VS]
Length = 190
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
+I S F H D HL+ NM++L G L ++ +L + + SL +ILL
Sbjct: 51 IITSLFVHADLWHLFANMITLYFFGNALLQMINQRSWLIIFFGGGLAGSLLFILL----- 105
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI---IIY 186
+ + IG S +FA+ L L+P++ + + V W +I II
Sbjct: 106 ----NAGSFGYV-IGASGAVFALGGTLAVLRPNSKVMVFPLPVPIPL--WIAVIGSFIIL 158
Query: 187 LLVPNASFKGHLSGILVG 204
+P+ +++GHL G+LVG
Sbjct: 159 SFLPSVAWQGHLGGLLVG 176
>gi|260439384|ref|ZP_05793200.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
gi|292808180|gb|EFF67385.1| rhomboid family protein [Butyrivibrio crossotus DSM 2876]
Length = 337
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 69/165 (41%), Gaps = 36/165 (21%)
Query: 58 ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGK----FLSLVIFL 113
A VI ++Y RL S F H HL NM+ L+ G +E+I G + +L+ +F
Sbjct: 184 AKYVIDYKEYYRLFTSMFLHAGVQHLASNMIMLLFVGDTIERIVGHVRYAIIYLAGGLFA 243
Query: 114 TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVK 173
+V T LYY T ++ C IG S +FA+ L Y I N
Sbjct: 244 SVGTLLYY------------RTYDMYACCIGASGAIFAVMGALI------YILICNRG-- 283
Query: 174 AIYAPWFELIIIYLLVPNASFKG----------HLSGILVGLTYT 208
F ++ I L V A + G H++G+L GL T
Sbjct: 284 --RTEGFSIVRIILFVAYAIYSGLTTQGTCNAAHIAGLLGGLLIT 326
>gi|330798987|ref|XP_003287530.1| hypothetical protein DICPUDRAFT_78374 [Dictyostelium purpureum]
gi|325082476|gb|EGC35957.1| hypothetical protein DICPUDRAFT_78374 [Dictyostelium purpureum]
Length = 196
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I ++ + R+I S+F H + +H +N +S I +++E + G + I L +FT+
Sbjct: 49 NEIINKKQFWRIIFSSFSHLNFIHFIFNSIS-IWSSKEIEVVKGSYYYFICTILLVLFTN 107
Query: 119 LYYILLAYIVFYITNDTS-----ELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVK 173
+ ++L YI F N E +H +G+S + F + + RL LN N
Sbjct: 108 ILFLLELYI-FKKANGKQNPQLGENNH-YLGYSCIAFGLMVVNIRLIS------LNGNEI 159
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILV 203
+ P+ L+ +++ ++S GHL+GI V
Sbjct: 160 ISFLPFLSLLYSSIIIKSSSIIGHLNGITV 189
>gi|409095895|ref|ZP_11215919.1| hypothetical protein TzilA_04480 [Thermococcus zilligii AN1]
Length = 206
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
+ L V + V +Y RLI + F H D +HL N L+ G QLE + G +FL L
Sbjct: 43 ALLKVALVNYCVTYCHEYWRLISAIFVHLDWIHLAMNTFFLLYLGSQLEILVGRARFLVL 102
Query: 110 VIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN 169
+ +F +L + L ++ +I + G S LF + L ++ L
Sbjct: 103 YLTAGIFGNL--LTLKFLGPFIISG---------GASGALFGIAGALIMIEGT-----LK 146
Query: 170 INVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
N++ F L +I +P ++ HL G++VGL +
Sbjct: 147 RNIQMALGNAFFLFLINSWLPGVNWVAHLGGLIVGLAF 184
>gi|381163863|ref|ZP_09873093.1| putative membrane protein [Saccharomonospora azurea NA-128]
gi|379255768|gb|EHY89694.1| putative membrane protein [Saccharomonospora azurea NA-128]
Length = 317
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+AV+ ++ RL+ S F H +HL NM++L + GR LE + G +F++L FL++F
Sbjct: 133 EAVVVLDEWWRLLTSGFLHYGLIHLAMNMLALWVLGRDLEMLLGRVRFVAL-YFLSMFAG 191
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
+ T S + +G A+L A+ + RL P I+ +NV
Sbjct: 192 GAAVFAFGAADTGTAGASGAIYGLMG--AILVAVLRL--RLNPTTAIGIIVLNV------ 241
Query: 179 WFELIIIYLLVPNASFKGHLSGILVG 204
I+ + +PN S GHL G++ G
Sbjct: 242 -----ILSVSIPNISLLGHLGGLVAG 262
>gi|297570706|ref|YP_003696480.1| rhomboid family protein [Arcanobacterium haemolyticum DSM 20595]
gi|296931053|gb|ADH91861.1| Rhomboid family protein [Arcanobacterium haemolyticum DSM 20595]
Length = 210
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 20/145 (13%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R + AF H MH+ +N+++LI G +LE G+F +L + + + V
Sbjct: 65 RFLTGAFLHSGFMHILFNVMALIFLGAELEPALKSGRFAALYLGSAIGGNA-------AV 117
Query: 129 FYITNDTSELSHCAIGFSAV---LFAMKTILTR-LQPDAYQQILNINVKAIYAPWFELII 184
+ + T E + A+G S LF +LTR L D ++ + + A +
Sbjct: 118 YAWSAWTGEWNTAAVGASGAIFGLFGALIVLTRALHTDMRGILILLGINA---------L 168
Query: 185 IYLLVPNASFKGHLSGILVGLTYTD 209
I + P S++ HL G L G+ T
Sbjct: 169 IAITTPQISWQAHLGGFLTGIILTG 193
>gi|444918952|ref|ZP_21239006.1| rhomboid family protein [Cystobacter fuscus DSM 2262]
gi|444709235|gb|ELW50258.1| rhomboid family protein [Cystobacter fuscus DSM 2262]
Length = 205
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 20/145 (13%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++Q Y R++ HG +HL +NM G E+ G G+FL L + + +S +
Sbjct: 42 LVQDGQYWRVLGCILTHGGPLHLAFNMWVAYSLGTPFERAIGSGRFLLLSLIAALGSSAF 101
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+L + V + L + AM TR I+ W
Sbjct: 102 ALLFNFKVVTVGASGMILGYGG--------AMLVTATR----------EFRRGIIF--WL 141
Query: 181 ELIIIYLLVPNASFKGHLSGILVGL 205
+ + L+P S+ GHL G L GL
Sbjct: 142 AQVAVLSLIPGVSWAGHLGGFLFGL 166
>gi|436837540|ref|YP_007322756.1| rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384068953|emb|CCH02163.1| rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 275
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 29 ATLGLVF--LQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYN 86
T+GL+ + +++ + FR+P + D ++ R+Y RLI + F H D HL++N
Sbjct: 5 GTIGLLLAIITALITFSAFRRPSVFERYAFTVDGILTHREYSRLISAGFVHVDWWHLFFN 64
Query: 87 MVSLILKGRQLEKIYGWGKFLSL 109
M +L+ +E + G K L L
Sbjct: 65 MYALLSFAGTVEWVVGPWKVLIL 87
>gi|283457105|ref|YP_003361668.1| membrane protein [Rothia mucilaginosa DY-18]
gi|283133083|dbj|BAI63848.1| uncharacterized membrane protein [Rothia mucilaginosa DY-18]
Length = 188
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 17/145 (11%)
Query: 62 IQQRDYKRLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
+Q +Y RLI F H D MHL +NM+ L + G LE++ G KFL + + TV L
Sbjct: 24 VQHGEYYRLISYGFLHSQNDPMHLVWNMIYLFIFGVSLERMMGRWKFLFVYMAATVGAGL 83
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
+ AY S G F + +L R + A IL I +
Sbjct: 84 SVYIFAY-----YRGAVGASGGVYGLYGAFFVI-LLLRRQKDTARLFILLIGIG------ 131
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
++ L P+ S GH G++ G
Sbjct: 132 ---VVQNLFTPHISHAGHFGGLVSG 153
>gi|169829737|ref|YP_001699895.1| hypothetical protein Bsph_4306 [Lysinibacillus sphaericus C3-41]
gi|168994225|gb|ACA41765.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 167
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
+ I A+ +IQ+ ++ R+ + F H MH+++N SL L G +LEKI G +F+++ +
Sbjct: 3 NYGIQANFLIQKGEWWRVFSAMFLHAGFMHMFFNTFSLYLFGPELEKIAGKARFITIYLV 62
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINV 172
+ + +A +FY + S+ ++G S +F + L ++ + +
Sbjct: 63 SGIVGN-----MATYIFY------DSSYASLGASGAIFGIFGAFGALVYYT-RKTMPMLR 110
Query: 173 KAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
K I +I+ L PN + HL G++ G
Sbjct: 111 KLILPIIIISVIMTFLQPNVNVFAHLGGLVTGF 143
>gi|389805798|ref|ZP_10202945.1| hypothetical protein UUA_01125 [Rhodanobacter thiooxydans LCS2]
gi|388447039|gb|EIM03053.1| hypothetical protein UUA_01125 [Rhodanobacter thiooxydans LCS2]
Length = 202
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 30 TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVS 89
TL ++ + +V F+ D+ + A+ +QR+Y RL+ H D HL +NM++
Sbjct: 4 TLAIIAITCIVSFMAFKNSRLLNDLILWPPAIARQREYHRLVTYGLVHADFGHLLFNMIT 63
Query: 90 LILKGRQLEKIYG 102
L GR +E +
Sbjct: 64 LFFFGRVMESFFA 76
>gi|386820316|ref|ZP_10107532.1| putative membrane protein [Joostella marina DSM 19592]
gi|386425422|gb|EIJ39252.1| putative membrane protein [Joostella marina DSM 19592]
Length = 287
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 21/204 (10%)
Query: 45 FRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWG 104
F+ P S LD + +++ AF HG MHL++NM+ L R ++
Sbjct: 49 FQLPKSFLDFIVQPWSIVTY---------AFFHGGFMHLFWNMLLLYFSSRIFLNLFSKR 99
Query: 105 KFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAY 164
FL+ V FL + LL+Y +F + S ++ IG SA + A+ + P+
Sbjct: 100 YFLN-VYFLGAVLGGAFFLLSYNIFPV---FSRVNSPLIGASAAIMAILIFVCTYIPNQE 155
Query: 165 QQILNINVKAIYAPWFELIIIYLLVPNASFKG---HLSGILVGLTYTD-----TPIGWGL 216
+++ N+K Y +++ + +P + G HL G L+G Y IG G+
Sbjct: 156 VRLIFFNIKLWYLGVAFVLLDLVQLPLGNSGGHIAHLGGALLGYVYAKKLQEGKDIGSGV 215
Query: 217 DYVVDKCQEMINGEEQEDMGEEQK 240
D V + +++ + K
Sbjct: 216 DGFVSSISNIFKRKKKSPLKTVHK 239
>gi|124003019|ref|ZP_01687870.1| cytoplasmic membrane protein [Microscilla marina ATCC 23134]
gi|123991669|gb|EAY31077.1| cytoplasmic membrane protein [Microscilla marina ATCC 23134]
Length = 219
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY-----GWGKFLSLVIFLT 114
+++Y R + S F HG HL +NM++L RQ+E IY G+G + +VI+L
Sbjct: 47 SRKEYYRFLSSGFIHGGSTHLLFNMLTLFFFARQVELIYGAVFPGYGSIMFVVIYLA 103
>gi|297829360|ref|XP_002882562.1| hypothetical protein ARALYDRAFT_896969 [Arabidopsis lyrata subsp.
lyrata]
gi|297328402|gb|EFH58821.1| hypothetical protein ARALYDRAFT_896969 [Arabidopsis lyrata subsp.
lyrata]
Length = 304
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIG 144
++ VSL+ G+ LE ++G +FL + + L + A ++YIT L G
Sbjct: 69 FSTVSLLFMGKFLEPVWGSKEFLKFIFVVNFLAYLCVFVTAIALYYITRLEIYLYMPFAG 128
Query: 145 FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
F VL + + ++ PD Q+IL + +K A W I++ L + ++ F + + L
Sbjct: 129 FHGVLAGLLVGIKQIIPD--QEILLLKIK---AKWLPSIMLILSIASSFFTLNSAAYLPT 183
Query: 205 LTYTDTPIGW-GLDYVVDKCQEMINGEEQEDMG 236
L + T +GW L Y+ + + + G+ +D
Sbjct: 184 LIF-GTYMGWLYLRYLQRRPETKLRGDPSDDFA 215
>gi|330818616|ref|YP_004362321.1| Rhomboid-like protein [Burkholderia gladioli BSR3]
gi|327371009|gb|AEA62365.1| Rhomboid-like protein [Burkholderia gladioli BSR3]
Length = 553
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
D+ RL+ S+FEH +HL N++ L G E++YG +FLSL +F V S+ +L
Sbjct: 217 DWWRLLTSSFEHFGALHLAVNLLVLARFGPLAERLYGSFRFLSLYLFAGVIASMASVL 274
>gi|397733720|ref|ZP_10500434.1| rhomboid family protein [Rhodococcus sp. JVH1]
gi|396930518|gb|EJI97713.1| rhomboid family protein [Rhodococcus sp. JVH1]
Length = 305
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R++ S F H +HL NM +L + GR E + G ++ + F SL A ++
Sbjct: 132 RVLGSGFLHFGIIHLAVNMFALWVIGRDTELVLGRARYACV-----YFASLLGGSAAVML 186
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPWFELIIIY 186
F + T+ S G + A IL RL+ P ++ INV II
Sbjct: 187 FQLGAVTAGASGAVFGL---MGAQAVILLRLRRSPAPVISVIAINV-----------IIS 232
Query: 187 LLVPNASFKGHLSGILVGLTYT 208
+ +P S GHL G++ G T
Sbjct: 233 ITIPGISLWGHLGGLVAGAAAT 254
>gi|398390255|ref|XP_003848588.1| hypothetical protein MYCGRDRAFT_63728 [Zymoseptoria tritici IPO323]
gi|339468463|gb|EGP83564.1| hypothetical protein MYCGRDRAFT_63728 [Zymoseptoria tritici IPO323]
Length = 270
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 22/177 (12%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I + +RL L H + H N+++ + + E +G ++ +FT +
Sbjct: 49 INLQTLRRLNLFPMLHTNFFHYLLNLIAFVPLVERFESEHG------TIVTFALFTGPFG 102
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAM---KTILTRLQPDAYQQILNINVKAIYAP 178
+L + + ++ +G S +F + + I T Q + + +I ++ + P
Sbjct: 103 LLPGLLYTVLERYVLRMNTTVVGASVWVFLLLSNEAIKTYRQ-NPHFEISDVKIPTWTTP 161
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVV-----DKCQEMINGE 230
F +++I++LVP S GHL G LVG WGL Y+ DK + G+
Sbjct: 162 LFLIVVIWVLVPGTSLLGHLCGALVGYL-------WGLGYIRFLAPHDKILRWVEGK 211
>gi|407036589|gb|EKE38247.1| peptidase S54 (rhomboid) family protein [Entamoeba nuttalli P19]
Length = 266
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 59 DAVIQQRDYKR----LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT 114
++ +RD+ ++ F H HL+ N +SL++ G +EK G + + L I
Sbjct: 49 SPLMSRRDFIHQIGPMLYHCFIHEGIFHLFGNSISLLVFGALVEKKIGTTRVILLFILSI 108
Query: 115 VFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKA 174
V + I L + N +G S +F + I+ QP Y I+ V
Sbjct: 109 VLQPILMISLFSLKLASGNS-------VVGISGYIFTL-IIIFYYQPGKYMDIVYCCVLN 160
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGW 214
I F L LL+ S GH GI++G+ YT + W
Sbjct: 161 IITYIFSL----LLLAQVSLSGHFCGIIIGVLYTRGFLDW 196
>gi|187934985|ref|YP_001884978.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
gi|187723138|gb|ACD24359.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
Length = 321
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I Q + RLI AF HG HL NM SL + G Q+E+I+G K+L + + +S
Sbjct: 176 NPLIYQGEIWRLITCAFLHGGIAHLLSNMYSLYILGPQVERIFGLKKYLCIYFTSAITSS 235
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L +LL N+ S ++G S +F + + +I K Y
Sbjct: 236 LLSVLL--------NENS----VSVGASGAIFGLLGAILIFSIKERHRI-----KKGYIL 278
Query: 179 WFELIIIYLLVPNASFK-----GHLSGILVGL 205
III +L+ + + GH+ G L GL
Sbjct: 279 NLVGIIILILMSGFTIRGIDNLGHIGGFLGGL 310
>gi|297564157|ref|YP_003683130.1| rhomboid family protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848606|gb|ADH70624.1| Rhomboid family protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 306
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ RL+ +AF HG HL +N ++ L G QLE+ G +FL+L + L F LLA
Sbjct: 137 EWYRLLTAAFLHGSIFHLLFNGYAMYLLGTQLERWLGHVRFLTLWV-LGAFAGSVLSLLA 195
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAM-KTILTRLQPDAYQQILNINVKAIYAPWFELII 184
E + ++G S +FA+ +L + L ++++ I ++
Sbjct: 196 -----------EPNQFSVGASGAIFALFGAVLV------IGRRLRLDLRMIGVLLVVNLV 238
Query: 185 IYLLVPNASFKGHLSGILVGLT 206
+ +VPN S+ H+ G++ GL
Sbjct: 239 LTFVVPNISWTAHIGGLVAGLA 260
>gi|418459787|ref|ZP_13030898.1| membrane protein [Saccharomonospora azurea SZMC 14600]
gi|359740100|gb|EHK88949.1| membrane protein [Saccharomonospora azurea SZMC 14600]
Length = 267
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+AV+ ++ RL+ S F H +HL NM++L + GR LE + G +F++L FL++F
Sbjct: 83 EAVVVLDEWWRLLTSGFLHYGLIHLAMNMLALWVLGRDLEMLLGRVRFVAL-YFLSMFAG 141
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
+ T S + +G A+L A+ + RL P I+ +NV
Sbjct: 142 GAAVFAFGAADTGTAGASGAIYGLMG--AILVAVLRL--RLNPTTAIGIIVLNV------ 191
Query: 179 WFELIIIYLLVPNASFKGHLSGILVG 204
I+ + +PN S GHL G++ G
Sbjct: 192 -----ILSVSIPNISLLGHLGGLVAG 212
>gi|183235522|ref|XP_649571.2| peptidase S54 (rhomboid) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|169800503|gb|EAL44183.2| peptidase S54 (rhomboid) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|449710571|gb|EMD49623.1| peptidase S54 (rhomboid) family protein [Entamoeba histolytica
KU27]
Length = 266
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 59 DAVIQQRDYKR----LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT 114
++ +RD+ ++ F H HL+ N +SL++ G +EK G + + L I
Sbjct: 49 SPLMSRRDFIHQIGPMLYHCFIHEGIFHLFGNSISLLVFGASVEKKIGTTQVILLFIVSI 108
Query: 115 VFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKA 174
V + I L + N +G S +F + I+ QP Y I+ V
Sbjct: 109 VLQPILMISLFSLKLASGNS-------VVGISGYIFTL-IIIFYYQPGKYMDIVYCCVLN 160
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGW 214
I F L LL+ S GH GI++G+ YT + W
Sbjct: 161 IITYIFSL----LLLAQVSLSGHFCGIIIGVLYTRGFLDW 196
>gi|302872967|ref|YP_003841600.1| rhomboid family protein [Clostridium cellulovorans 743B]
gi|307686518|ref|ZP_07628964.1| Rhomboid family protein [Clostridium cellulovorans 743B]
gi|302575824|gb|ADL49836.1| Rhomboid family protein [Clostridium cellulovorans 743B]
Length = 326
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
++ I ++ RL+ F H MH+ +NM +L GR +E++YGW KF+ + IF + S
Sbjct: 177 NSYIINGEFYRLLTCTFLHSGLMHIAFNMYALNNIGRLIERVYGWKKFILIYIFAGLSGS 236
Query: 119 L 119
L
Sbjct: 237 L 237
>gi|400290912|ref|ZP_10792939.1| hypothetical protein SRA_08281 [Streptococcus ratti FA-1 = DSM
20564]
gi|399921703|gb|EJN94520.1| hypothetical protein SRA_08281 [Streptococcus ratti FA-1 = DSM
20564]
Length = 223
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 58 ADAVIQQRDYK-RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF 116
D V+Q + RLI F H H +N ++L G+ E I+G GKFL L + V
Sbjct: 46 GDLVVQMPNQLWRLITPIFVHIGWEHFLFNGLTLYFVGQLAEGIWGSGKFLLLYLLSGVM 105
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVL--FAMKTILTRLQPDAYQQILNINVKA 174
+++ + V TS G AVL F L +L + YQ ++ IN
Sbjct: 106 GNIFTLFFTPSVVAAGASTSLFG--LFGAIAVLGYFGHNPFLKQLGRN-YQALIAIN--- 159
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
+I L +P+ S GHL GI+ GL
Sbjct: 160 --------LIFNLFMPSVSIAGHLGGIVGGL 182
>gi|251778447|ref|ZP_04821367.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082762|gb|EES48652.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 321
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
L++ + +I Q + RL+ AF HG HL +NM +L + G Q+EKI+G K+L ++
Sbjct: 169 LNLGAKYNPLIYQGEVWRLVTCAFLHGGITHLLFNMYALYILGPQVEKIFGIKKYL-IIY 227
Query: 112 FLTVFTS 118
F++ TS
Sbjct: 228 FVSAITS 234
>gi|258650339|ref|YP_003199495.1| rhomboid family protein [Nakamurella multipartita DSM 44233]
gi|258553564|gb|ACV76506.1| Rhomboid family protein [Nakamurella multipartita DSM 44233]
Length = 292
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
A + +Y RL+ S F HG+ +HL NM+SL G LE+I G G+ L++ + + S
Sbjct: 103 PAEVASGEYWRLLTSGFLHGNLVHLATNMLSLYWLGIPLERILGRGRMLTIYLISLLGAS 162
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFA-MKTILTRLQPDAYQQILNINVKAIYA 177
+ +L + V IG S ++ M +L + + + A+
Sbjct: 163 VSVLLFSAPV-----------SLTIGASGAVYGLMGALLATFRRLRLDLRPLVVILALN- 210
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVG 204
+ I P S++GHL G + G
Sbjct: 211 -----VFITFSYPGLSWQGHLGGFVAG 232
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL+ S F H H +NM+SL G LE G ++L+L + S +
Sbjct: 126 VAEGEWWRLVTSMFTHEAVWHFAFNMLSLWWLGGPLEAALGRARYLALYFCSGLAGSAFT 185
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQ--QILNINVKAI 175
LLA D S +G S +F A +L RLQ D +L IN+
Sbjct: 186 YLLA--------DPHTAS---LGASGAIFGLFGATAVLLRRLQYDMRPIIALLVINLIFT 234
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVGL 205
+AP F N S++ H+ G++ G+
Sbjct: 235 FAPGF----------NISWQAHIGGLVAGV 254
>gi|257054112|ref|YP_003131944.1| membrane protein [Saccharomonospora viridis DSM 43017]
gi|256583984|gb|ACU95117.1| uncharacterized membrane protein [Saccharomonospora viridis DSM
43017]
Length = 336
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
AV+ ++ RL+ S F H +HL NM++L + GR LE + G +FL+ V FL++F
Sbjct: 154 AVVLFDEWWRLLASGFLHYGLLHLAMNMLALWVLGRDLELLLGRIRFLA-VYFLSMFAGA 212
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
+ + T S + +G AVL A+ + RL A I+ +N
Sbjct: 213 VAVFVFGAADTATAGASGAIYGLMG--AVLVAVLRL--RLNATAAIGIIVLN-------- 260
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
I+I + +P S GHL G++ G
Sbjct: 261 ---IVISVSLPGISLLGHLGGLVAG 282
>gi|423315755|ref|ZP_17293660.1| hypothetical protein HMPREF9699_00231 [Bergeyella zoohelcum ATCC
43767]
gi|405585471|gb|EKB59295.1| hypothetical protein HMPREF9699_00231 [Bergeyella zoohelcum ATCC
43767]
Length = 243
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 25 TIPPATLGLVFLQSMVY-LNIFRKPWSTLDVCISADAVIQQRDYK--RLILSAFEHGDDM 81
IPPA ++ L ++V+ L F P L ++A + Q D+K ++I F HGD M
Sbjct: 5 NIPPAVKAILLLNAIVFVLTQFLFP--PLKTFLAAYYPMSQ-DFKIWQIITHMFVHGDFM 61
Query: 82 HLYYNMVSLILKGRQLEKIYGWGKFLSL 109
H+ +NM++L G LE+I G KF++
Sbjct: 62 HILFNMLTLFSFGPVLERIMGQKKFITF 89
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ D+ RLI + F HG +H+ +N +L G +E IYG KFL F V +
Sbjct: 50 VDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGSEKFLFSYFFTGVVGN--- 106
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+A +FY + S G VLFA + P + + +++ P
Sbjct: 107 --IATHIFYHDTISVGASGAIFGLIGVLFAAG--FRKDTPFFMKPVTGVSL----LPIIL 158
Query: 182 LIIIYLLVP--NASFKGHLSGILVG--LTYTDTPIGW 214
+ ++Y +P N + HL G L G L YT P W
Sbjct: 159 INVVYGFLPGTNINNAAHLGGFLSGMLLGYTMKPFSW 195
>gi|148269479|ref|YP_001243939.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170288153|ref|YP_001738391.1| rhomboid family protein [Thermotoga sp. RQ2]
gi|281411803|ref|YP_003345882.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
gi|147735023|gb|ABQ46363.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170175656|gb|ACB08708.1| Rhomboid family protein [Thermotoga sp. RQ2]
gi|281372906|gb|ADA66468.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
Length = 235
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ D+ RLI + F HG +H+ +N +L G +E IYG KFL F + +
Sbjct: 49 VDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGN--- 105
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
LA VFY + S G +LFA + P + + +++ P
Sbjct: 106 --LATHVFYHDTISVGASGAIFGLIGILFAAG--FRKDTPFFMKPVTGMSL----LPIIL 157
Query: 182 LIIIYLLVP--NASFKGHLSGILVG--LTYTDTPIGW 214
+ ++Y +P N + HL G L G L YT P W
Sbjct: 158 INVVYGFLPGTNINNAAHLGGFLSGMLLGYTMRPFSW 194
>gi|281205968|gb|EFA80157.1| hypothetical protein PPL_06979 [Polysphondylium pallidum PN500]
Length = 338
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 20/200 (10%)
Query: 8 ELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFR---KPWSTLDVCISADAVIQQ 64
E+ LI H+L ++ P T ++ L ++L F P+ C A +
Sbjct: 95 EINLIFAGFHVLE-SLQSLTPGTSIMMMLIISIWLYQFNYDIGPYHLTSSCNRA----LK 149
Query: 65 RDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
+Y+R +LS F H +HL N VSLI + +E+ G ++L L + + I++
Sbjct: 150 GEYRRTLLSIFSHSGLIHLVLNCVSLI-DLKSIEETEGSFRYLQYTFMLIITCVVVEIII 208
Query: 125 AYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELII 184
+ + N + ++G+S VLF + I T I++ A+Y+ LII
Sbjct: 209 SKQL--SGNGQRLMDVESLGYSGVLFGLLVIST-----FRYGIMSSARTALYS----LII 257
Query: 185 IYLLVPNASFKGHLSGILVG 204
+ NA F GHL+GI+ G
Sbjct: 258 TQIFNRNAHFIGHLAGIVAG 277
>gi|380300997|ref|ZP_09850690.1| membrane protein [Brachybacterium squillarum M-6-3]
Length = 310
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 21/144 (14%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
+ + F HG MHL NM +L + G+ LEK G +F + I+LT + + ++ +
Sbjct: 131 FLTAGFLHGGVMHLLLNMYALWIIGQYLEKTLGHVRFAA--IYLTSILAGHTAVMLF--- 185
Query: 130 YITNDTSELSHCA-IGFSAVLFAMKTIL----TRLQPDAYQQILNINVKAIYAPWFELII 184
T+ TS+ + +G S +F + L RL Q + I + ++
Sbjct: 186 --TDATSQAWYSGTLGASGGIFGLFAALFIVNRRLGGQTAQVAVLIGLN---------LV 234
Query: 185 IYLLVPNASFKGHLSGILVGLTYT 208
I L PN S++GHL G+++G T
Sbjct: 235 ITFLFPNISWQGHLGGLVMGAALT 258
>gi|433629203|ref|YP_007262831.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
gi|432160796|emb|CCK58126.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
Length = 249
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 35/187 (18%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
LVF+ + + + R+ + + AV + Y RL+ SAF H MHL NM +L +
Sbjct: 49 LVFVMQVTVMGLERQ------LALWPPAVASGQTY-RLVTSAFLHYGAMHLLLNMWALYV 101
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
G LE G +F +L ++L +L Y++ + T+ S G LF
Sbjct: 102 VGPPLEMWLGRLRFGALY----AVSALGGSVLVYLIAPLNTATAGASGAVFG----LFGA 153
Query: 153 KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL----LVPNASFKGHLSGI----LVG 204
++ R L+++V+ + A LI+I L L P S++GH+ G+ LVG
Sbjct: 154 TFMVARR--------LHLDVRWVVA----LIVINLAFTFLAPAISWQGHVGGLVTGALVG 201
Query: 205 LTYTDTP 211
TY P
Sbjct: 202 ATYVYAP 208
>gi|188589117|ref|YP_001920138.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
gi|188499398|gb|ACD52534.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
Length = 321
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I Q + RL+ AF HG HL +NM +L + G Q+EKI+G K+L ++ F++ TS
Sbjct: 176 NPLIYQGEVWRLVACAFLHGGITHLLFNMYALYILGPQVEKIFGIKKYL-IIYFVSAITS 234
>gi|296268056|ref|YP_003650688.1| rhomboid family protein [Thermobispora bispora DSM 43833]
gi|296090843|gb|ADG86795.1| Rhomboid family protein [Thermobispora bispora DSM 43833]
Length = 286
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 35/174 (20%)
Query: 62 IQQRDYKRLILSAFEHGDD---MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ Q ++ RLI SAF H H+ +NM +L + G LE++ G +F +L + + S
Sbjct: 114 VYQGEWWRLITSAFLHAPPPSFWHILFNMWALYVIGPDLERLLGSARFAALYLLSALGGS 173
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQQILNINVKA 174
+ L A+G S ++ A+ + RL D + I +
Sbjct: 174 VAIYLFGV--------------AALGASGAIYGLFGALFVVARRLGTDVRGVLWLIGIN- 218
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMIN 228
++I +VP S++GHL G++ G T + GL Y ++ + ++
Sbjct: 219 --------VLITFVVPGISWQGHLGGLVTG-----TVVAAGLVYAPERHRTLVQ 259
>gi|300742642|ref|ZP_07072663.1| rhomboid family protein [Rothia dentocariosa M567]
gi|300381827|gb|EFJ78389.1| rhomboid family protein [Rothia dentocariosa M567]
Length = 261
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 66 DYKRLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
+Y R++ S F H D H+ NM+SL + G LE++ GW ++L LV L++ + +L
Sbjct: 114 EYYRVLTSGFLHSQNDYSHIVMNMLSLYIFGIALEQMMGWWRYL-LVYLLSIVGGSFGVL 172
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
L + + T+E+ + G ++ A I+ L+ + L I + A F
Sbjct: 173 L------LDDPTAEVVGASGGIFGLIGAYLVIMVILRERDNIRALMIMIAVNVAFGF--- 223
Query: 184 IIYLLVPNASFKGHLSGILVG 204
LVP S++ H G +VG
Sbjct: 224 ----LVPGISWQAHAGGFVVG 240
>gi|168056652|ref|XP_001780333.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668281|gb|EDQ54892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 311
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++++L+L G+ LE +G +F+ ++F+ +FT LA +++ T L GF
Sbjct: 76 SVLALLLAGKHLEPFWGSREFIKFIVFVNLFTCASTFALAIFLYFTTRRGDYLYAPISGF 135
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
VL + ++ P+ Q+I + ++A ++P L +I+ +V
Sbjct: 136 HGVLAGFLVAVKQISPE--QEIPALKLRAKWSP--SLFVIFSIV 175
>gi|372223812|ref|ZP_09502233.1| putative transmembrane rhomboid family protein [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 289
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
+I +F H H+++NM+ L R ++G ++L+ V FL V T + LL+Y VF
Sbjct: 64 IITYSFFHAGFGHIFWNMIMLWFASRIFLNLFGDKRYLT-VYFLGVITGGLFFLLSYNVF 122
Query: 130 -YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ N + L + G +AVL + + + P+ +++ NVK + F +++ +
Sbjct: 123 PALLNSNTALVGASAGVTAVLLFVCSYI----PNQDVRVIFFNVKLWHVGAFFVLVDLIQ 178
Query: 189 VPNASFKG----HLSGILVGLTYT 208
+P G HL G L+G Y
Sbjct: 179 IPYGGNIGGRLAHLGGALLGYVYA 202
>gi|328870427|gb|EGG18801.1| methionyl-tRNA synthetase beta subunit [Dictyostelium fasciculatum]
Length = 277
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 23/140 (16%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI S H + +HL +NM++ I LE G + L++ + +SL ++++ +
Sbjct: 68 RLITSTLFHINLLHLLFNMMAFIPFSTLLENSCGSVLYGYLMLVFMITSSLMAVIISNTI 127
Query: 129 FYITNDTSELSH-CAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL 187
++I D + +S+ C IG S V+F + T +N + P ++
Sbjct: 128 YWI--DPTAISYSCTIGLSGVVFLLVT---------------VNCHWVTTPR-----SFI 165
Query: 188 LVPNASFKGHLSGILVGLTY 207
L P +SF GHL GI+ Y
Sbjct: 166 LFPQSSFIGHLGGIVAAYIY 185
>gi|384107096|ref|ZP_10007998.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
gi|383833031|gb|EID72500.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
Length = 305
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R++ S F H +HL NM +L + GR E + G ++ + F SL A ++
Sbjct: 132 RVLGSGFLHFGIIHLAVNMFALWVIGRDTELVLGRARYACV-----YFVSLLGGSAAVML 186
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPWFELIIIY 186
F + T+ S G + A IL RL+ P ++ +NV II
Sbjct: 187 FQLGAVTAGASGAVFGL---MGAQAVILLRLRRSPAPVISVIAVNV-----------IIS 232
Query: 187 LLVPNASFKGHLSGILVGLTYT 208
+ +P S GHL G++ G T
Sbjct: 233 ITIPGISLWGHLGGLVAGAAAT 254
>gi|403252324|ref|ZP_10918634.1| Rhomboid family protein [Thermotoga sp. EMP]
gi|402812337|gb|EJX26816.1| Rhomboid family protein [Thermotoga sp. EMP]
Length = 235
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ D+ RLI + F HG +H+ +N +L G +E IYG KFL F + +
Sbjct: 49 VDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGN--- 105
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
LA VFY + S G +LFA + P + + +++ P
Sbjct: 106 --LATHVFYHDTISVGASGAIFGLIGILFAAG--FRKDTPFFMKPVTGMSL----LPIIL 157
Query: 182 LIIIYLLVP--NASFKGHLSGILVG--LTYTDTPIGW 214
+ ++Y +P N + HL G L G L YT P W
Sbjct: 158 INVVYGFLPGTNINNAAHLGGFLSGMLLGYTMRPFSW 194
>gi|148271189|ref|YP_001220750.1| hypothetical protein CMM_0011 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829119|emb|CAN00017.1| conserved membrane protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 287
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 28/145 (19%)
Query: 69 RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R++ SAF H D +H+ +NM+S+ + GR LE + G +FL+L + + SL
Sbjct: 121 RMLTSAFTHSPDSILHIVFNMLSVFVFGRVLEPMLGRARFLALFLISALGGSLA------ 174
Query: 127 IVFYITNDTSELSHCAIGFSAVLFAMKT---ILTRLQPDAYQQILNINVKAIYAPWFELI 183
V I + E +G S +F + +L R L NV P +I
Sbjct: 175 -VEVIGSAMGEPLQAVVGASGAIFGLMGGYFVLARK--------LGGNV----GPLLGII 221
Query: 184 IIYLL----VPNASFKGHLSGILVG 204
I LL V S++ H+ G++ G
Sbjct: 222 AINLLLGFVVQGVSWQAHVGGLVTG 246
>gi|20093492|ref|NP_613339.1| membrane serine protease [Methanopyrus kandleri AV19]
gi|19886321|gb|AAM01269.1| Predicted membrane serine protease of the Rhomboid superfamily
[Methanopyrus kandleri AV19]
Length = 210
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
LI F H + +HL +NM+ L+ G QLE++ +FL L + + L L
Sbjct: 47 LITYMFLHANLIHLLFNMLGLLTFGVQLERVLSTSEFLVLYLLSGLMGGLAQTAL----- 101
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVK-AIYAPWFELIIIYLL 188
T D +G SA +F + LT L+P + L I + A++A + + ++++
Sbjct: 102 --TPDVP-----VVGASAAIFGLLGCLTMLRPMSMMMFLFIPMPLALFAVLYAALALFVI 154
Query: 189 ----VPNASFKGHLSGILVG 204
V + GHL G++VG
Sbjct: 155 QSGVVTQVAHAGHLVGMIVG 174
>gi|419967548|ref|ZP_14483436.1| rhomboid family protein [Rhodococcus opacus M213]
gi|424859689|ref|ZP_18283671.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|356661133|gb|EHI41465.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|414567056|gb|EKT77861.1| rhomboid family protein [Rhodococcus opacus M213]
Length = 305
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R++ S F H +HL NM +L + GR E + G ++ + F SL A ++
Sbjct: 132 RVLGSGFLHFGIIHLAVNMFALWVIGRDTELVLGRARYACV-----YFVSLLGGSAAVML 186
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPWFELIIIY 186
F + T+ S G + A IL RL+ P ++ +NV II
Sbjct: 187 FQLGAVTAGASGAVFGL---MGAQAVILLRLRRSPAPVISVIAVNV-----------IIS 232
Query: 187 LLVPNASFKGHLSGILVGLTYT 208
+ +P S GHL G++ G T
Sbjct: 233 ITIPGISLWGHLGGLVAGAAAT 254
>gi|403387738|ref|ZP_10929795.1| membrane associated peptidase [Clostridium sp. JC122]
Length = 216
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +++ +Y RL + F H +HL NM++L G +EK+ G GKF+ + I +F S
Sbjct: 61 NLLVKNGEYYRLFTAGFLHASVLHLTLNMIALNAIGSIVEKVLGKGKFIIVYILSLIFAS 120
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT---ILTRLQPDAYQQILNINVKAI 175
Y + + N + ++G S +F + I+ L + K +
Sbjct: 121 -------YGSYVVANVKLGIG-ISVGASGAIFGLLGSLLIIVFLNKKVFG-------KTV 165
Query: 176 YAPWFELIIIYLL----VPNASFKGHLSGILVG 204
E+I++ LL VPN H++G + G
Sbjct: 166 LRGITEVIVVNLLIGFFVPNIDITAHVTGGIAG 198
>gi|282163047|ref|YP_003355432.1| peptidase S54, rhomboid family protein [Methanocella paludicola
SANAE]
gi|282155361|dbj|BAI60449.1| peptidase S54, rhomboid family protein [Methanocella paludicola
SANAE]
Length = 261
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
++ S F H MHL++NM++L G LE+ G G+FL L + L IL
Sbjct: 114 ILTSIFLHSSLMHLFFNMLALFFFGPLLERRIGSGRFLGLYFGTGIIAGLAQIL------ 167
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
+ +G S +F + LT L PD + + +K +Y ++ V
Sbjct: 168 ------AFPGSAVLGASGAIFGVLGTLTVLTPDLVVYLYFVPLKMVYVTILFAVLDLFPV 221
Query: 190 PNASFKG-----HLSGILVGLT 206
+ G HL+G+ +GL
Sbjct: 222 LTGTSDGVAHIAHLAGLAIGLA 243
>gi|441518028|ref|ZP_20999756.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441455057|dbj|GAC57717.1| hypothetical protein GOHSU_24_00060 [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 244
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
+Y RL+ S F H HL NM+SL + GR+LE+++G ++L+ + +++F +LL
Sbjct: 69 EYWRLLTSGFLHSSVPHLALNMISLYIVGRELERLFGPARYLT-IYLMSLFGGSAAVLL 126
>gi|162449650|ref|YP_001612017.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
gi|161160232|emb|CAN91537.1| hypothetical protein sce1379 [Sorangium cellulosum So ce56]
Length = 565
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++ + RL+ SAF H D MHL+ NM++L G LE + G +FL L + SL
Sbjct: 218 AVRHGELYRLLASAFLHADPMHLFVNMLALWSFGPMLEALLGPRRFLLLYGASALGGSLA 277
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT--ILTRLQPDAY---QQILNINVKAI 175
+L ++G S ++ + T I L+P I + +A
Sbjct: 278 SAMLE-------------DRWSVGASGAIWGLMTAGIGVALRPHGLLPPAMIAQMRSRA- 323
Query: 176 YAPWFELI--IIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
W L ++Y P HL G +VG T + GL VD+ + + E +
Sbjct: 324 ---WLPLGLNLVYSFQPGVDLLAHLGGGVVGFALVVTVLPRGL-TPVDRRERAADAEPR 378
>gi|311112557|ref|YP_003983779.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
gi|310944051|gb|ADP40345.1| rhomboid family protein [Rothia dentocariosa ATCC 17931]
Length = 261
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 66 DYKRLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
+Y R++ S F H D H+ NM+SL + G LE++ GW ++L LV L++ + +L
Sbjct: 114 EYYRVLTSGFLHSQNDYSHIVMNMLSLYIFGIALEQMMGWWRYL-LVYLLSIVGGSFGVL 172
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
L + + T+E+ + G ++ A I+ L+ + L I + A F
Sbjct: 173 L------LDDPTAEVVGASGGIFGLIGAYLVIMVVLRERDNIRALMIMIAVNVAFGF--- 223
Query: 184 IIYLLVPNASFKGHLSGILVG 204
LVP S++ H G ++G
Sbjct: 224 ----LVPGISWQAHAGGFVIG 240
>gi|383829530|ref|ZP_09984619.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
gi|383462183|gb|EID54273.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
Length = 317
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
AV+ ++ RLI S F H +HL NM++L + GR LE + G +FL++ F S
Sbjct: 133 QAVVAFDEWWRLITSGFLHYGLLHLAMNMLALWVLGRDLEMLLGRVRFLAV-----YFVS 187
Query: 119 LYYILLAYIVFYITNDTSELSHCAI-GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
+ A F ++ + AI G + + + RL P I+ +N
Sbjct: 188 MLGGGAAVFAFGAPETSTAGASGAIYGLMGAML-VAVLRLRLNPTTAIGIIVLN------ 240
Query: 178 PWFELIIIYLLVPNASFKGHLSGI 201
+I+ + +PN S GHL G+
Sbjct: 241 -----LILTVSIPNISLLGHLGGL 259
>gi|338535843|ref|YP_004669177.1| rhomboid family protein [Myxococcus fulvus HW-1]
gi|337261939|gb|AEI68099.1| rhomboid family protein [Myxococcus fulvus HW-1]
Length = 212
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+Q Y RL+ + EHG +HL +NM ++ G E+ G +F L + + S +
Sbjct: 49 VQAGQYWRLLGAVLEHGSPLHLLFNMSVVVTLGFTAERGIGSLRFFGLSLVTALGASTFS 108
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
++ + V T S +G++ AM + TR + + + W
Sbjct: 109 LIFDFDV-----PTVGASGMILGWAG---AMLPVATR---EGRRDLFI---------WLA 148
Query: 182 LIIIYLLVPNASFKGHLSGILVGL 205
+ + L+P S+ GHL G L GL
Sbjct: 149 QVAVLSLLPFVSWAGHLGGFLFGL 172
>gi|295837743|ref|ZP_06824676.1| rhomboid family protein [Streptomyces sp. SPB74]
gi|295826650|gb|EFG64961.1| rhomboid family protein [Streptomyces sp. SPB74]
Length = 338
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 24/147 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL+ + F H + H+ NM+SL + G +E + G +FL+L + V S+
Sbjct: 170 VAEGEWYRLLTATFLHEEVWHIGLNMLSLWMLGGPIEALLGRARFLTLYLLAGVGGSVAS 229
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
L A + ++G S +F + +L + V+A + P+
Sbjct: 230 FLFA-----------DPLGASLGASGAIFGLF---------GATGVLVLRVRADFRPFVA 269
Query: 182 LIIIYLLV----PNASFKGHLSGILVG 204
L++I L++ +++ H+ G++VG
Sbjct: 270 LLVINLIITFGWSGIAWQAHIGGLVVG 296
>gi|150019138|ref|YP_001311392.1| rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
gi|149905603|gb|ABR36436.1| Rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
Length = 328
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 43 NIFR-KPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
NIF W L + +I Q Y RL+ AF HG +H+ NM SL + G ++++IY
Sbjct: 164 NIFNIDYWVLLKYGGKVNELINQGQYWRLLTCAFLHGGLIHIVGNMYSLYILGPEIQQIY 223
Query: 102 GWGKFLSLVIFLTVFTSL 119
G K+ + IF + +SL
Sbjct: 224 GVYKYFIIYIFSCLTSSL 241
>gi|389722438|ref|ZP_10189077.1| hypothetical protein UU5_04134 [Rhodanobacter sp. 115]
gi|388441874|gb|EIL98110.1| hypothetical protein UU5_04134 [Rhodanobacter sp. 115]
Length = 202
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
D+ + AV ++R+Y RL+ H D HL++NM++L GR + +Y
Sbjct: 28 DLILWPPAVARKREYYRLLTYGLVHADGTHLFFNMLTLFFFGRAMAPVY 76
>gi|403509381|ref|YP_006641019.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402803589|gb|AFR10999.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 256
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 58 ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
V+ ++ RLI +AF HG +HL +N ++ G QLE+ G G+FL+L
Sbjct: 76 GQGVVWHGEWYRLITAAFLHGGVLHLLFNSYAMYALGPQLERWLGHGRFLAL 127
>gi|385651543|ref|ZP_10046096.1| rhomboid family membrane protein [Leucobacter chromiiresistens JG
31]
Length = 308
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 69 RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
RL+ + F H +H+ +N+ +L L GR LE+ G F L +F V SL ++ AY
Sbjct: 133 RLLTAMFTHSPTFFLHILFNLYALWLFGRNLEQAIGRAAFAVLFLFAGVGGSLGVMMWAY 192
Query: 127 IVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY 186
+ D L +G S +F + A I ++ V LI I
Sbjct: 193 V------DPQALVVPTVGASGAIFGVLAATLVAMRAARANITSLAV---------LIAIN 237
Query: 187 L---LVPNA--SFKGHLSGILVG 204
L+P A S++ HL G++VG
Sbjct: 238 FAIGLIPGAAISWQAHLGGLIVG 260
>gi|91772866|ref|YP_565558.1| rhomboid-like protein [Methanococcoides burtonii DSM 6242]
gi|91711881|gb|ABE51808.1| Rhomboid family protein with AN1-like zinc finger domain
[Methanococcoides burtonii DSM 6242]
Length = 279
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 35/166 (21%)
Query: 44 IFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW 103
+F KPW+ LI F H HL++NM+ L GR+LEK G
Sbjct: 123 MFLKPWT-------------------LITHMFLHASFGHLFFNMLVLFFFGRELEKRIGK 163
Query: 104 GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDA 163
FL + + +L Y + TS + IG S + + LT L P+
Sbjct: 164 DLFLYVYFISGIIAALGYSI-----------TSANNVPIIGASGAIMGVFAALTILAPNM 212
Query: 164 YQQILNINVKAIYAPWFELIIIYLLVPNA----SFKGHLSGILVGL 205
+ I +K YA +++ ++L+ NA + HLSG+LVG+
Sbjct: 213 EVYVYFIPMKIKYALLLFVLLDFMLL-NANDMVAHTAHLSGVLVGV 257
>gi|254445602|ref|ZP_05059078.1| peptidase, S54 (rhomboid) family, putative [Verrucomicrobiae
bacterium DG1235]
gi|198259910|gb|EDY84218.1| peptidase, S54 (rhomboid) family, putative [Verrucomicrobiae
bacterium DG1235]
Length = 286
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 16/185 (8%)
Query: 30 TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVS 89
T+ L + ++V F KP + +++ + + RL SA HG MH +N+ +
Sbjct: 6 TISLCIVTAIVTQIAFTKPAVLDRLLFKPRSILVDKQWDRLFSSALIHGSWMHAGFNLFA 65
Query: 90 LILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVL 149
L G LE YGW FL + F S+ L + + +D + L G ++
Sbjct: 66 LYSFGSALEIYYGWKTFLVIYAF-----SILGGSLLSLYLHRHHDYAALGASG-GVCGII 119
Query: 150 FAMKTILTRLQPDAYQQILNINVK---AIYAPWFELIIIYLL---VPNASFKGHLSGILV 203
FA TI L P Q+ I + +A + L Y L V N H G +V
Sbjct: 120 FA--TIF--LAPGTGVQMFFIPITIPGNFFAVAYLLGTFYALRKGVGNIGHDAHFGGAIV 175
Query: 204 GLTYT 208
GL +
Sbjct: 176 GLVFA 180
>gi|220929279|ref|YP_002506188.1| rhomboid family protein [Clostridium cellulolyticum H10]
gi|219999607|gb|ACL76208.1| Rhomboid family protein [Clostridium cellulolyticum H10]
Length = 519
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
+ +I + Y R I F HGD +HL N SL + G Q+EKI+G G+FL++
Sbjct: 222 NNLIMEGQYWRFISPMFLHGDIVHLAVNCYSLYIIGSQVEKIFGRGRFLAI 272
>gi|319957644|ref|YP_004168907.1| rhomboid family protein [Nitratifractor salsuginis DSM 16511]
gi|319420048|gb|ADV47158.1| Rhomboid family protein [Nitratifractor salsuginis DSM 16511]
Length = 230
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 62/209 (29%)
Query: 28 PATLGLVFLQSMVYLN--IFRKPWSTLDVC-------ISADAVIQQRDYKRLILSAFEHG 78
P T GL+ L + Y+ I WS + V + A AV++ ++ RL+ F HG
Sbjct: 8 PLTWGLILLSLLGYVAELICGGSWSDIPVSSLIACGGVYAPAVLEGGEWWRLLSGLFLHG 67
Query: 79 DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY-------- 130
HL NM+SL + GR +E LY+ LL Y++ Y
Sbjct: 68 GPEHLALNMISLYIVGRIVE--------------------LYFPLLDYLILYFLSGIGGF 107
Query: 131 ITNDTSELSHCAIGFSAVLFAMKTILT--------------RLQPDAYQQILNINVKAIY 176
+ + T IG S +F + L R + IL IN
Sbjct: 108 LVSMTLHPETVIIGASGAIFGLFGALGGFMFFHRERFGASYRAFVREFGAILAIN----- 162
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVGL 205
+I LLVP H++G+++G+
Sbjct: 163 ------LIFDLLVPGIDLSAHITGLILGI 185
>gi|294506415|ref|YP_003570473.1| Rhomboid protease glpG [Salinibacter ruber M8]
gi|294342743|emb|CBH23521.1| Rhomboid protease glpG [Salinibacter ruber M8]
Length = 230
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P TL L+ V L F P ++ + R++ R + + F H HL +NM
Sbjct: 25 PITLALLLSNLGVSLYAFTDPSLLRELSFRPHRIRTHREFYRFLTAGFVHASGTHLAFNM 84
Query: 88 VSLILKGRQLEKIYGWGKFLSL 109
++ G LE I G G FL L
Sbjct: 85 ITFYFFGPLLEGILGIGAFLLL 106
>gi|242035691|ref|XP_002465240.1| hypothetical protein SORBIDRAFT_01g034860 [Sorghum bicolor]
gi|241919094|gb|EER92238.1| hypothetical protein SORBIDRAFT_01g034860 [Sorghum bicolor]
Length = 321
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L+L G+ LE ++G + L + + + TS + +++YIT + S L GF
Sbjct: 77 SIVGLLLFGKVLEPLWGAKELLKFIFIVNLSTSACVFVTTIVLYYITQEESYLYTPVSGF 136
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
VL + + ++ PD Q LN+ V I A W I+ ++ V
Sbjct: 137 YGVLSGLLVGIKQILPD---QELNLLVLKISAKWIPSIVAFISV 177
>gi|452838363|gb|EME40304.1| hypothetical protein DOTSEDRAFT_112179, partial [Dothistroma
septosporum NZE10]
Length = 232
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 34/183 (18%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL-- 119
I R RL H D H N+++L+ + E +G + ++F F L
Sbjct: 13 INFRTLYRLNTYPLIHRDIFHYLLNILALVPLLERFESEHG--TITTFILFTGPFGLLPG 70
Query: 120 -YYILLAYIVFYITNDTSELSHCAIGFSAVLF------AMKTILTRLQPDAYQQILNINV 172
Y +L +F+ A+G S +F AMKT + + Y Q+ +I +
Sbjct: 71 GLYTILERFIFHFNG-------AAVGSSVWVFLLLCNEAMKT----YRANPYFQLEDIKI 119
Query: 173 KAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVV-----DKCQEMI 227
P F +++I L+P+ S GHLSG G WGL Y+ DK I
Sbjct: 120 PTWTTPLFLILVINFLIPHTSLLGHLSGAATGYL-------WGLGYIRFLAPHDKILTWI 172
Query: 228 NGE 230
G+
Sbjct: 173 EGK 175
>gi|15838777|ref|NP_299465.1| hypothetical protein XF2186 [Xylella fastidiosa 9a5c]
gi|9107328|gb|AAF84985.1|AE004032_4 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 206
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG--WGKFLSLVIFLTVFT 117
A+ + R Y RLI F H + HL +NMV+L G +E + G G L+ +F
Sbjct: 37 AIDRDRQYDRLITYGFVHANISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFY---- 92
Query: 118 SLYYILLAYIVFYITNDTSE--LSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKA 174
L +L++ + YI N + LS A G SAVLFA LQP A +L I A
Sbjct: 93 -LGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAA----VLLQPWALIVVLFIPAPA 147
Query: 175 IY 176
I+
Sbjct: 148 IF 149
>gi|223935890|ref|ZP_03627805.1| Rhomboid family protein [bacterium Ellin514]
gi|223895491|gb|EEF61937.1| Rhomboid family protein [bacterium Ellin514]
Length = 282
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
++ ++ Y RL+ SAF H + HL++NM L GR +E I+G FLS+
Sbjct: 40 ILAEKQYHRLVTSAFLHANWRHLFFNMFGLYAFGRLIESIHGPLMFLSI 88
>gi|431796050|ref|YP_007222954.1| hypothetical protein Echvi_0667 [Echinicola vietnamensis DSM 17526]
gi|430786815|gb|AGA76944.1| putative membrane protein [Echinicola vietnamensis DSM 17526]
Length = 209
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEK--IYGWGKFLSLVIFL 113
V Q+ Y R +LS F H D MHL +NM++ GR +E+ Y +G +V+F+
Sbjct: 37 VNQKGQYDRFVLSGFIHKDGMHLLFNMITFYFFGRLVEQYLTYRFGGMTGVVVFV 91
>gi|359425053|ref|ZP_09216156.1| rhomboid family protein [Gordonia amarae NBRC 15530]
gi|358239633|dbj|GAB05738.1| rhomboid family protein [Gordonia amarae NBRC 15530]
Length = 299
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +Y RL+ + F H H+ NM+SL L GR LE G+ ++ + + V S
Sbjct: 115 VHDGEYWRLLTAGFLHFSLTHIAANMLSLFLLGRDLELAIGYPRYAGVYLASLVGGSAAV 174
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPW 179
+L A D + + + ++ AM I+ R++ P I+ +N
Sbjct: 175 MLFA-------GDLTINAGASGAIYGLMGAMLVIVLRMRASPVPVLSIIGLN-------- 219
Query: 180 FELIIIYLLVPNASFKGHLSGILVGLTYT 208
I++ + VP S HL G+L G T
Sbjct: 220 ---IVLSITVPGISLAAHLGGLLFGALAT 245
>gi|284162630|ref|YP_003401253.1| rhomboid family protein [Archaeoglobus profundus DSM 5631]
gi|284012627|gb|ADB58580.1| Rhomboid family protein [Archaeoglobus profundus DSM 5631]
Length = 225
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
++I S F H D HL+ NM L G +LE+ G K+ L+IF F S LAY+V
Sbjct: 74 QIITSIFVHADFWHLFINMFVLFFFGNELERRLGERKY--LIIF---FASGIAGNLAYLV 128
Query: 129 F-YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY- 186
+ ++TN A+G SA +F + L + P+ I + + L IY
Sbjct: 129 YAFLTNPFIP----AMGASAAIFGVMGALAIIAPEIRVVIFPLPIPVSIKVAILLFAIYD 184
Query: 187 -LLVPNASFKG-----HLSGILVGL 205
LL+P + G HL+G+LVGL
Sbjct: 185 LLLLPFSYSTGVAHIAHLAGLLVGL 209
>gi|256810190|ref|YP_003127559.1| rhomboid family protein [Methanocaldococcus fervens AG86]
gi|256793390|gb|ACV24059.1| Rhomboid family protein [Methanocaldococcus fervens AG86]
Length = 190
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 27/150 (18%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT--VFTSLYYILLAY 126
++++S F HG HL NM L + G LE+I G + L+IFLT + +L YIL A
Sbjct: 40 QIVMSIFMHGSITHLLVNMFVLFIFGTYLERIVGSKNY--LLIFLTSGIVGNLAYILYA- 96
Query: 127 IVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI------LNINVKAIYAPWF 180
Y+T D + ++G S +F + L L P + ++I + I
Sbjct: 97 ---YLTGDYAP----SVGASGAIFGVMGALAILAPHLRVVVFPLPVPISIKLAVIIFALI 149
Query: 181 ELIIIYLLVPNASFKG-----HLSGILVGL 205
+LI L+P S G HL+G++ GL
Sbjct: 150 DLI----LLPYTSKTGIAHITHLAGLITGL 175
>gi|432333562|ref|ZP_19585328.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
gi|430779509|gb|ELB94666.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
Length = 249
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R++ S F H +HL NM +L + GR E + G ++ + F SL A ++
Sbjct: 76 RVLGSGFLHFGIIHLAVNMFALWVIGRDTELVLGRARYACV-----YFVSLLGGSAAVML 130
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPWFELIIIY 186
F + T+ S G + A IL RL+ P ++ +NV II
Sbjct: 131 FQLGAVTAGASGAVFGL---MGAQAVILLRLRRSPAPVISVIAVNV-----------IIS 176
Query: 187 LLVPNASFKGHLSGILVGLTYT 208
+ +P S GHL G++ G T
Sbjct: 177 ITIPGISLWGHLGGLVAGAAAT 198
>gi|319786966|ref|YP_004146441.1| rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
gi|317465478|gb|ADV27210.1| Rhomboid family protein [Pseudoxanthomonas suwonensis 11-1]
Length = 205
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P TL L+ + ++V F + + AV +QR+Y RL+ F H D HL +NM
Sbjct: 4 PVTLALIAITALVSWRAFSDRRLLDRMILWPPAVARQREYWRLLTHGFLHADFPHLLFNM 63
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN--DTSELSHCAIG- 144
+L G +E++ G S + FL + S I++A + Y+ N + S A G
Sbjct: 64 FTLFFFGGLIERLMT-GITGSRLTFLLFYLSA--IVVAILPSYLKNIGNPRYFSLGASGA 120
Query: 145 FSAVLFA 151
SAVLFA
Sbjct: 121 VSAVLFA 127
>gi|227494200|ref|ZP_03924516.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831934|gb|EEH64317.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 309
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ ++ ++ R + HG +HL NM SL L G LE++ G ++L+L + + S
Sbjct: 123 NPILGYKEPWRFLTVMLVHGGLIHLALNMYSLYLVGNSLERVLGTYRYLALYVASGLGGS 182
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L +L A + H +G S +F + + +Q + ++ +A+
Sbjct: 183 LAVLLWAMV------SLDSFYHVTVGASGAIFGLFAAVYVVQRKS-----GMDARAMGIL 231
Query: 179 WFELIIIYLLVPNASFKGHLSGILVG 204
+ + + N S++GHL G++VG
Sbjct: 232 LAVNLALGFTISNVSWQGHLGGMIVG 257
>gi|240103462|ref|YP_002959771.1| peptidase [Thermococcus gammatolerans EJ3]
gi|239911016|gb|ACS33907.1| Peptidase, putative, Rhomboid-like protein protein [Thermococcus
gammatolerans EJ3]
Length = 207
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q ++ RL + F H +HL N LI G QLE G ++L L I +F ++
Sbjct: 55 VTQHHEWWRLFTAMFVHLSWIHLAMNTFFLIYLGSQLELFVGRWRYLILYITAGLFGNVL 114
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+ L D +S A S LF + L ++ IL N+++ A F
Sbjct: 115 SVALM--------DPYTISGGA---SGALFGIAGALIMIEG-----ILKKNIQSALANAF 158
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEE 231
L +I +P+ + HL G+LVG+ + +G +YV ++ M+ +E
Sbjct: 159 FLFLINSWMPHVNAIAHLGGLLVGIAFGYI---YG-NYVKERMMRMLYWDE 205
>gi|71731775|gb|EAO33834.1| Rhomboid-like protein [Xylella fastidiosa subsp. sandyi Ann-1]
Length = 202
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG--WGKFLSLVIFLTVFT 117
A+ + R Y RLI F H D HL +NMV+L G +E + G L+ +F
Sbjct: 33 AIDRDRQYDRLITYGFVHADISHLLFNMVTLYFFGSMIEAVMSELTGSLLTYPLFY---- 88
Query: 118 SLYYILLAYIVFYITNDTSE--LSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKA 174
L +L++ + YI N + LS A G SAVLFA LQP A +L I A
Sbjct: 89 -LGALLVSILPSYIKNQNNPKYLSLGASGAVSAVLFAA----VLLQPWALIVVLFIPAPA 143
Query: 175 IY 176
I+
Sbjct: 144 IF 145
>gi|336121537|ref|YP_004576312.1| Rhomboid family protein [Methanothermococcus okinawensis IH1]
gi|334856058|gb|AEH06534.1| Rhomboid family protein [Methanothermococcus okinawensis IH1]
Length = 191
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+ I S F HG HL+ NM L G +LEK G FL + + ++ Y+L +
Sbjct: 41 QFITSIFIHGSFTHLFLNMFVLFFFGLRLEKWIGGANFLKIFFISGIAGNIAYLLYS--- 97
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI--LNINVKAIYA----PWFE- 181
Y TN A+G S + + LT L P+ I I +K YA FE
Sbjct: 98 -YSTNQYIP----AVGASGAISGIIGALTILDPNMEIMIFPFPIPIKLKYATILFAGFEI 152
Query: 182 LIIIYLLVPNASFKGHLSGILVGL 205
L +I+ ++P HL G+ G+
Sbjct: 153 LCLIFSIMPTIGHAAHLGGLFTGM 176
>gi|400289188|ref|ZP_10791220.1| rhomboid-like protein [Psychrobacter sp. PAMC 21119]
Length = 202
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY-----GWGKFLSLVIFLTVF 116
+ + R + F H D MHL +NM +L GR +E +Y G+G V+F +
Sbjct: 36 VNNGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAIEGLYQSFLFGYG----FVVFYVL- 90
Query: 117 TSLYYILLAYIVFYI--TNDTSELSHCAI-GFSAVLFAM 152
I++A I YI N+ S LS A G SAVLFA
Sbjct: 91 ----AIIIAMIPSYIKNKNNASYLSLGASGGVSAVLFAF 125
>gi|146413501|ref|XP_001482721.1| hypothetical protein PGUG_04676 [Meyerozyma guilliermondii ATCC
6260]
Length = 291
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 15/187 (8%)
Query: 24 DTIPPA-TLGL-VFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDM 81
D + PA T+GL VF +V ++ + + A A+ + + R+ + H
Sbjct: 37 DRLQPALTVGLPVFTFVLVLIDFVTGNAVSNAFALYAGAIFKL-ELNRISMYPLAHTGIF 95
Query: 82 HLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL 138
H + N++SL + EK++G G L+L L V T+L Y LLA I I+ T
Sbjct: 96 HWFVNVISLSPLLARFEKVHGTVYTGITLNL---LAVSTALIYSLLAGI---ISPSTRVE 149
Query: 139 SHCAIGFSAVLF-AMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGH 197
AI F + F A+K P A+Q + Y+ + LII ++LVPN+S GH
Sbjct: 150 GLSAICFLFLEFYALKE--QSYYPIAFQWGDRYRLPTKYSAFVVLIITFILVPNSSLLGH 207
Query: 198 LSGILVG 204
L+GI G
Sbjct: 208 LAGIGSG 214
>gi|311031134|ref|ZP_07709224.1| hypothetical protein Bm3-1_11396 [Bacillus sp. m3-13]
Length = 237
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 17/194 (8%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
L++ + + I Q ++ RL+ F H H +N +SL+L G +E++ G GKF++ +
Sbjct: 39 LNLTVGFNLFIWQGEWWRLVTPIFLHASLTHFLFNSLSLVLFGPAVERMLGKGKFITFYL 98
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTI---LTRLQPDAYQQIL 168
+ ++ +LL ++ SH +G S +FA+ + + L+PD +
Sbjct: 99 LGGILANVATLLLKPDIY---------SH--LGASGAIFAIFGLYFYMVFLRPDLLDR-- 145
Query: 169 NINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMIN 228
N + I +++ L N ++ HL G G +G G + +
Sbjct: 146 -ANSQVILTILGVGLVMTFLNSNINWIAHLFGFFAGTVLAPFFLGRGPATSPRSLRAIFP 204
Query: 229 GEEQEDMGEEQKQN 242
+ KQN
Sbjct: 205 NIGRPSAPRGGKQN 218
>gi|333395939|ref|ZP_08477756.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145094|ref|ZP_14652570.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403329|gb|EJN56584.1| Membrane-associated serine protease [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 223
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +IQQ + RLI+ F H MH+ N V+L G Q+E ++G + FT
Sbjct: 49 NILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWR----------FTL 98
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
+Y LL+ IV I + + ++G S LF + L +A++Q N ++A+
Sbjct: 99 IY--LLSGIVGNIASFVFNMG-ISVGASTALFGLFGAFFML-VEAFRQ--NTAIRAM-GQ 151
Query: 179 WFELIIIY-----LLVPNASFKGHLSGILVGLTYTD 209
F L I+ L P GH+ G+L G +
Sbjct: 152 QFALFIVLNLAFDLFNPGIDLAGHVGGLLGGFLVAN 187
>gi|225449084|ref|XP_002275709.1| PREDICTED: transmembrane protein 115 [Vitis vinifera]
gi|296086036|emb|CBI31477.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+ V L+ G+ LE I+G +FL + + TS+ + A ++YIT + L GF
Sbjct: 74 STVGLLFLGKLLEPIWGTREFLKFIFVVNFLTSVCVFITAIALYYITRQENYLYMPLSGF 133
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
VL + ++ PD Q++ ++ I A W +++ L + + F + L L
Sbjct: 134 HGVLSGFLVGIKQIIPD--QELSLFSLLKIRARWLPSLMLLLSIAISFFTTESAAYLPAL 191
Query: 206 TYTDTPIGW-GLDYVVDKCQEMINGEEQEDM 235
+ T +GW L Y+ K + + G+ ++
Sbjct: 192 IF-GTYMGWIYLRYLQRKPETRLKGDPSDEF 221
>gi|170780474|ref|YP_001708806.1| rhomboid family membrane protein [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155042|emb|CAQ00138.1| putative rhomboid family membrane protein [Clavibacter
michiganensis subsp. sepedonicus]
Length = 287
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 30/154 (19%)
Query: 62 IQQRDYK--RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT 117
+ DY+ R++ SAF H +H+ +NM+S+ + GR LE + G +FL+L + +
Sbjct: 112 VASGDYEPWRMLTSAFTHSPSSILHIVFNMLSVFVFGRVLEPMLGRARFLALFLISALGG 171
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT---ILTRLQPDAYQQILNINVKA 174
SL V I + E +G S +F + +L R L NV
Sbjct: 172 SLA-------VEVIGSAMGEPLQAVVGASGAIFGLMGGYFVLARK--------LGGNV-- 214
Query: 175 IYAPWFELIIIYLL----VPNASFKGHLSGILVG 204
P +I I LL V S++ H+ G++ G
Sbjct: 215 --GPLLGIIAINLLLGFVVQGVSWQAHVGGLVTG 246
>gi|110803398|ref|YP_698757.1| rhomboid family protein [Clostridium perfringens SM101]
gi|110683899|gb|ABG87269.1| rhomboid family protein [Clostridium perfringens SM101]
Length = 342
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 12 ILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLI 71
IL+ ++IL I LG F +++V +N W +A+I +Y RL+
Sbjct: 151 ILIGLNILAFLVCLIVATALGAGFFRNIVEMNPKILYWMGAK---HNNAIIFHGEYYRLV 207
Query: 72 LSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
S F H +HL +NM +L + G +E+IYG K+L + + S++
Sbjct: 208 TSMFLHSGIVHLLFNMYALYILGDFIERIYGAKKYLVIYFVSGIVASIF 256
>gi|182681852|ref|YP_001830012.1| rhomboid family protein [Xylella fastidiosa M23]
gi|386083155|ref|YP_005999437.1| rhomboid family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417558058|ref|ZP_12209051.1| membrane protein [Xylella fastidiosa EB92.1]
gi|182631962|gb|ACB92738.1| Rhomboid family protein [Xylella fastidiosa M23]
gi|307578102|gb|ADN62071.1| rhomboid family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338179302|gb|EGO82255.1| membrane protein [Xylella fastidiosa EB92.1]
Length = 202
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG--WGKFLSLVIFLTVFT 117
A+ + Y RLI F H D HL +NMV+L G +E + G G L+ +F
Sbjct: 33 AIDRDHQYDRLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFY---- 88
Query: 118 SLYYILLAYIVFYITNDTSE--LSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKA 174
L +L++ + YI N + LS A G SAVLFA LQP A +L I A
Sbjct: 89 -LGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAA----VLLQPWALIVVLFIPAPA 143
Query: 175 IY 176
I+
Sbjct: 144 IF 145
>gi|22122463|ref|NP_666114.1| rhomboid domain-containing protein 2 [Mus musculus]
gi|81879423|sp|Q8VEK2.1|RHBD2_MOUSE RecName: Full=Rhomboid domain-containing protein 2; AltName:
Full=Rhomboid-like protein 7
gi|17390840|gb|AAH18360.1| Rhomboid domain containing 2 [Mus musculus]
gi|26334761|dbj|BAC31081.1| unnamed protein product [Mus musculus]
gi|74139145|dbj|BAE38463.1| unnamed protein product [Mus musculus]
Length = 361
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
L L S L + + P + + + ++A+ + Y RL+ F + + + L + +
Sbjct: 27 LSLLVSGPRLFLLQPPLAPSGLSLRSEALRNWQVY-RLVTYIFVYENPVSLLCGAIIIWR 85
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC--AIGFSAVLF 150
E+ G + + TVF+++ Y+ F + S+L A GF+ V F
Sbjct: 86 FAGNFERTVGTVRHCFFTLIFTVFSAIIYL-----SFESVSSLSKLGEVEDARGFTPVAF 140
Query: 151 AM---KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
AM ++ +R++ + + V ++ PW L+ L+P SF ++SG+L+GL+Y
Sbjct: 141 AMLGVTSVRSRMR---RALVFGVVVPSVLVPWL-LLCASWLIPQTSFLSNVSGLLIGLSY 196
>gi|408673735|ref|YP_006873483.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387855359|gb|AFK03456.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 307
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 46 RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGK 105
RKPW+ + C F H +HL +NM++ G +++ G K
Sbjct: 67 RKPWTIVTYC-------------------FTHYGFLHLLFNMLTFFWFGTLVQEFIGSRK 107
Query: 106 FLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL-----SHCAIGFSAVLFAMKTILTRLQ 160
L++ + + + L+YI + Y + + N + L + +G SA ++A+ L
Sbjct: 108 LLNIYLIGGILSGLFYITI-YNLIALANQSGSLNLNNITPTILGASAAVYAVMFAAVALL 166
Query: 161 PDAYQQILNIN-VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
P+ + I +K Y WF LI+ +++ P++ HL G + G Y
Sbjct: 167 PEYEFYLFGIVLIKIRYVAWFFLILSFIM-PSSGIS-HLGGAISGYFY 212
>gi|383786745|ref|YP_005471314.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109592|gb|AFG35195.1| putative membrane protein [Fervidobacterium pennivorans DSM 9078]
Length = 233
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 47 KPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKF 106
+P++ L ++ Q ++ R++ + F HG +HL +NM +L + G E IYG +F
Sbjct: 39 EPYAYLLFGAQYGPLVDQGEWWRIVTAMFMHGGFLHLAFNMYALYILGSYAEGIYGTYRF 98
Query: 107 LSLVI 111
LS I
Sbjct: 99 LSYFI 103
>gi|400293315|ref|ZP_10795191.1| peptidase, S54 family [Actinomyces naeslundii str. Howell 279]
gi|399901556|gb|EJN84435.1| peptidase, S54 family [Actinomyces naeslundii str. Howell 279]
Length = 285
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
LDV + + R + +AF H + MHL +NM +L + G LE + G +F ++ +
Sbjct: 103 LDVMLGFFPAAAASEPWRFLTTAFLHANYMHLGFNMWALWVLGGALEPVLGRWRFTAVYL 162
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN 171
+ S L++ +T + +G S +F + + + Q+ +
Sbjct: 163 LSALGGSTAIYWLSW------PETEAWTTLTVGASGAVFGLFSTMF-----VVQRRFGRD 211
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
I A ++ L N S++GHL G++VG
Sbjct: 212 TSGIVALLVINGVVSFLGANISWQGHLGGLIVG 244
>gi|28199124|ref|NP_779438.1| hypothetical protein PD1237 [Xylella fastidiosa Temecula1]
gi|28057222|gb|AAO29087.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
Length = 206
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG--WGKFLSLVIFLTVFT 117
A+ + Y RLI F H D HL +NMV+L G +E + G G L+ +F
Sbjct: 37 AIDRDHQYDRLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFY---- 92
Query: 118 SLYYILLAYIVFYITNDTSE--LSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKA 174
L +L++ + YI N + LS A G SAVLFA LQP A +L I A
Sbjct: 93 -LGALLVSILPSYIKNQKNPKYLSLGASGAVSAVLFAA----VLLQPWALIVVLFIPAPA 147
Query: 175 IY 176
I+
Sbjct: 148 IF 149
>gi|410452631|ref|ZP_11306595.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
gi|409934113|gb|EKN71029.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
Length = 193
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 42 LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
L IF W ++ + I + + RLI F H H+ +N SL+L G LE++
Sbjct: 34 LPIFPNQW-FIETFSGVNLYIMEGEVWRLITPTFMHSGFAHMLFNSFSLVLFGPALERML 92
Query: 102 GWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM-----KTIL 156
G G+FL Y+L I T L++ +G S +F + I+
Sbjct: 93 GGGRFL-----------FVYLLSGLIANVATLLLEPLTYTHVGSSGAIFGLFGYYIAIII 141
Query: 157 TR---LQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
R L Q IL + V ++ +F+ PN + HL G++ G
Sbjct: 142 FRKHMLSKQNSQIILVLCVVSLIMTFFQ--------PNINITAHLFGLISGF 185
>gi|420152492|ref|ZP_14659536.1| peptidase, S54 family [Actinomyces massiliensis F0489]
gi|394764617|gb|EJF46356.1| peptidase, S54 family [Actinomyces massiliensis F0489]
Length = 279
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R + +AF H MHL +NM +L + G LE I G +F +L +L + + ++
Sbjct: 113 RFMTTAFLHASLMHLAFNMWALWVLGSALEPILGRWRFAALC-------ALSALGGSTMI 165
Query: 129 FYITNDTSELS--HCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY 186
+++ + T+ S +G S +F + L + Q+ + AI + I
Sbjct: 166 YWLASPTAPASWLTSTVGASGAVFGLFAALFII-----QRRFGRDTSAIVGLLVLNLAIS 220
Query: 187 LLVPNASFKGHLSGILVG 204
+ N S++GHL G++ G
Sbjct: 221 FIGANISWQGHLGGLVTG 238
>gi|325677503|ref|ZP_08157167.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
gi|325551750|gb|EGD21448.1| rhomboid family protein [Rhodococcus equi ATCC 33707]
Length = 300
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++ R++ S F H MHL NM +L + GR E + G ++ ++ + + S
Sbjct: 127 VAAGEFSRIVTSGFLHIGLMHLAVNMFALYVIGRDTEMVLGRARYFAVYVIALLGGSASV 186
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPW 179
++L +V T+ S G L A IL RL+ P ++ INV
Sbjct: 187 LMLDPLV-----PTAGASGAIFGL---LGAQAVILLRLKRSPTPVLAVIAINV------- 231
Query: 180 FELIIIYLLVPNASFKGHL 198
II + +P S GH+
Sbjct: 232 ----IISITIPGISLWGHM 246
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ SAF H HL +NM++L G LE G +F++L + + S+ LL +
Sbjct: 108 RLLTSAFLHFGLTHLAFNMLALYFVGPPLEAALGRARFVTLYLVSALGGSVLVYLLTF-- 165
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ L+ A G LF ++ R LN++V+++ A + L
Sbjct: 166 -------NALTAGASGAVFGLFGATFVVGRK--------LNMDVRSVMAIIVLNLAFTFL 210
Query: 189 VP-----NASFKGHLSGILVG 204
+P N S++GH+ G++ G
Sbjct: 211 IPLFTSQNISWQGHIGGLVTG 231
>gi|327349312|gb|EGE78169.1| rhomboid protein 2 [Ajellomyces dermatitidis ATCC 18188]
Length = 275
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 77 HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL---YYILLAYIVFYITN 133
H H ++N+V+L + E +G S+ +F+ ++L Y+L ++ +
Sbjct: 73 HNGLFHTFWNIVALTPLLERFEAEHG--TLTSVALFVGPLSTLPAGLYLLFEKVI--LRG 128
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
+T+ L F +L ++ I T Q + + I + P +I+++ LVPN S
Sbjct: 129 NTAVLGSSVWIF--LLLGIEAIKT-FQTNPHFVIGTYRIPTWTTPLLLVILVFALVPNTS 185
Query: 194 FKGHLSGILVGLTYTDTPIGWG-LDYVV--DKCQEMINGE 230
GHLSG+ VG Y +G G L ++V +K I G+
Sbjct: 186 LLGHLSGLAVGYVYMKNEVGLGYLKFLVPPEKILRWIEGK 225
>gi|239617958|ref|YP_002941280.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
gi|239506789|gb|ACR80276.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
Length = 285
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 29/197 (14%)
Query: 29 ATLGLVFLQSMVYLNIF--RKPWSTLDV--------CISADAVIQQRDYKRLILSAFEHG 78
AT+ L+ + VY +F T+D+ IS A+++ Y L + F HG
Sbjct: 9 ATIILIIINLAVYFFVFILSHSRRTIDLYNLILIYGGISRGALLRGLFYTPLT-ALFLHG 67
Query: 79 DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL 138
+ +H+ +NM +L G +E IYG KFL IF V + + A + YIT +S
Sbjct: 68 NMLHILFNMYALFQLGYLVEGIYGMRKFL---IFYFVSGIIGNLTAATMTPYITIGSSS- 123
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY-LLVPNASFKGH 197
G VLFA+ + P + + +++ P L +++ L++PN S H
Sbjct: 124 --AIFGLVGVLFALG--FKKDTPVVLKSVTGLSL----LPIILLNLMFGLMIPNISNSAH 175
Query: 198 LSGILVGLTYTDTPIGW 214
+ G++ G + +GW
Sbjct: 176 VGGLIAG-----SLLGW 187
>gi|295107387|emb|CBL04930.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
+Q + R + F H D MHL +NMV+L G LE++ G G FL+L
Sbjct: 106 VQAGELFRFVTPMFLHMDLMHLGFNMVALFSVGEVLERVLGRGNFLAL 153
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ + F H + H+ +N++ L GR +E G +FL+L + + L LAY+V
Sbjct: 140 RLLTAVFLHQELSHILFNLLGLWFLGRMVEPALGRRRFLALYL----LSGLGGSTLAYLV 195
Query: 129 FYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQQILNINVKAIYAPWFELII 184
+E + ++G S +F A + R+Q D +L + V ++
Sbjct: 196 -------AEPNQPSLGASGAIFGLMGAFVVLARRVQLDMRPVVLILGVS---------LV 239
Query: 185 IYLLVPNASFKGHLSGILVG 204
+ P+ S++GH+ G++ G
Sbjct: 240 LTFTRPDISWEGHIGGLVTG 259
>gi|422323889|ref|ZP_16404926.1| hypothetical protein HMPREF0737_00036 [Rothia mucilaginosa M508]
gi|353344682|gb|EHB88983.1| hypothetical protein HMPREF0737_00036 [Rothia mucilaginosa M508]
Length = 276
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 62 IQQRDYKRLILSAFEH--GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
+Q +Y R+I F H D MHL +NM+SL + G LE++ G KFL + + +F +L
Sbjct: 114 VQHGEYYRVISYGFLHMQHDPMHLVWNMISLFIYGVSLERMMGRWKFLVVYLGSIIFGAL 173
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFA-MKTILT----RLQPDAYQQILNINVKA 174
V+ + TS +G S LF M + LT R Q D + + I
Sbjct: 174 G-------VYVLAPGTS-----VVGASGGLFGLMGSFLTLLIIRKQKDTARVFVMITAPN 221
Query: 175 IYAPWFELIIIYLLVP-NASFKGHLSGILVGLTYT 208
II ++ P N S H G + G+ T
Sbjct: 222 --------IIYSIMTPSNISHACHAGGFVGGVLLT 248
>gi|357390844|ref|YP_004905685.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311897321|dbj|BAJ29729.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 307
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF-TSLYYILL 124
++ RL+ + F HG MH+ N+ SL + G QLE++ G ++L+L + + +L Y+L
Sbjct: 141 EWYRLVSAQFVHGGLMHIAANVFSLWVLGPQLERVLGRARYLTLYLVSGIAGNALGYLLT 200
Query: 125 AYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQP 161
++ + + +G +AVLF + T +QP
Sbjct: 201 GADMWAVGASGAIFG--LLGATAVLF--RVTRTPMQP 233
>gi|378732203|gb|EHY58662.1| glycosylphosphatidylinositol transamidase [Exophiala dermatitidis
NIH/UT8656]
Length = 284
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Query: 45 FRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWG 104
F+ WS + A I RL AF H H+ + + LI + E WG
Sbjct: 51 FQTVWSVIQWGSLAPKEIGFGSLYRLNTFAFIHNGFWHMLMDAICLIPLLERFEA--EWG 108
Query: 105 KFLSLVIFLTVFTSL---YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQP 161
SL +F+ + Y+LL ++ D + + +I + +L A ++I T +
Sbjct: 109 TLNSLALFMGPLGQIPAGIYLLLDGVIL---RDNTPVVGSSI-WVFLLLASESIKT-YKA 163
Query: 162 DAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYV 219
+ + +I + +P L++ L+PN SF GHLSG + G WGL Y+
Sbjct: 164 NPHFEISGHQIPTWISPLVILVVTSALIPNTSFLGHLSGCITGYL-------WGLGYI 214
>gi|158311990|ref|YP_001504498.1| rhomboid family protein [Frankia sp. EAN1pec]
gi|158107395|gb|ABW09592.1| Rhomboid family protein [Frankia sp. EAN1pec]
Length = 381
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
Y RL+ +AF H + +H+ N+ +L + G QLE I G + ++L + V + L+
Sbjct: 214 QYYRLLTAAFLHVNYLHVLVNLYALFVLGYQLEAILGRLRLVALFVACAVGGN----TLS 269
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
Y+V ++ ++ S GF A I RL+ D Q ++ I + +A F L I
Sbjct: 270 YLVNGVSVNSVGASTAIFGF---FGAYYVIARRLRADTTQILILIGIN--FALTFTLSFI 324
Query: 186 YLLVPNASFKGHLSGILVGLTYTDTP 211
G ++G+LVGL Y P
Sbjct: 325 DRW---GHVGGLVAGVLVGLLYAYVP 347
>gi|300797244|ref|NP_001178756.1| rhomboid domain-containing protein 2 [Rattus norvegicus]
Length = 361
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
L L S L + + P + + + ++A+ + Y RL+ F + + + L + +
Sbjct: 27 LSLLVSGPRLFLLQPPLAPSGLSLRSEALRNWQVY-RLVTYIFVYENPISLLCGAIIIWR 85
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC--AIGFSAVLF 150
E+ G + + TVF+++ Y+ F + S+L A GF+ V F
Sbjct: 86 FAGNFERSVGTVRHCFFTLIFTVFSAIIYL-----SFESVSSLSKLGEVEDARGFTPVAF 140
Query: 151 AM---KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
AM ++ +R++ + + V ++ PW L+ L+P SF ++SG+L+GL+Y
Sbjct: 141 AMLGVTSVRSRMR---RALVFGVVVPSVLVPWL-LLCASWLIPQTSFLSNVSGLLIGLSY 196
>gi|68535096|ref|YP_249801.1| hypothetical protein jk0034 [Corynebacterium jeikeium K411]
gi|68262695|emb|CAI36183.1| putative membrane protein [Corynebacterium jeikeium K411]
Length = 241
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ R++ +AF H D HL +NM+ + L GR +E+ YG LSL++ +L
Sbjct: 72 EWWRILTAAFVHLDPAHLGFNMLLIFLIGRDVERFYGPVVMLSLIVASAAGGAL------ 125
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRL-QPDAYQQILNINVKAIYAPWFELII 184
Y + +G+ LFAM L+R+ Q D I+ + V Y+
Sbjct: 126 -ACMYFQPNVPVGGASTVGYG--LFAMLISLSRIRQRDLRGPIILLLVNLGYS------- 175
Query: 185 IYLLVPNASFKGHLSGILVG 204
L+ N S GH+ G+ G
Sbjct: 176 --LMYSNVSLWGHIGGLAGG 193
>gi|325267381|ref|ZP_08134042.1| rhomboid family protein [Kingella denitrificans ATCC 33394]
gi|324981176|gb|EGC16827.1| rhomboid family protein [Kingella denitrificans ATCC 33394]
Length = 223
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF 116
S A+ + Y RLI SAF H + HL++N+ +L + +YGW FL L+ F +V
Sbjct: 37 SVGAIRYHKQYVRLISSAFLHANGWHLFFNLFTLYFFSGIITLVYGWLGFL-LLFFGSVL 95
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAI----GFSAVLFAMKTI 155
+ L Y + S+ AI G S +LFA T+
Sbjct: 96 AGNLFSLWLY--------KNRPSYAAIGASGGVSGILFAAITL 130
>gi|384099561|ref|ZP_10000647.1| putative transmembrane rhomboid family protein [Imtechella
halotolerans K1]
gi|383832909|gb|EID72379.1| putative transmembrane rhomboid family protein [Imtechella
halotolerans K1]
Length = 288
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
L+ AF HG MH+++NM+ L GR ++ +FL+ V FL ++ LL+Y +F
Sbjct: 65 LLTYAFFHGGLMHIFWNMLLLYFAGRMFLNLFDGRRFLN-VYFLGALAGGFFFLLSYNLF 123
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
+ + IG SA + A+ + P Q K + F ++ L +
Sbjct: 124 PVFVGVNS---VLIGASAAVMAVLIFMCTYTPYQELQFFFFRFKLWHLGVFLVLWDLLQL 180
Query: 190 PNASFKG---HLSGILVGLTYTD 209
P ++ G HL G L G Y
Sbjct: 181 PMSNPGGRIAHLGGALWGFIYAK 203
>gi|403070966|ref|ZP_10912298.1| hypothetical protein ONdio_15397 [Oceanobacillus sp. Ndiop]
Length = 253
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++ ++ +Y RL+ F HGD MH +N SL+L G LE++ G KFL
Sbjct: 49 VGSNFMVAAGEYWRLVTPIFLHGDLMHALFNSFSLVLFGPALEQMLGKSKFL 100
>gi|404212656|ref|YP_006666831.1| putative membrane protein [Gordonia sp. KTR9]
gi|403643455|gb|AFR46695.1| putative membrane protein [Gordonia sp. KTR9]
Length = 237
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +Y RL+ + F H MH+ NM+SL + GR LE G G++L ++Y
Sbjct: 53 VASGEYWRLLTAGFLHFSVMHVAVNMLSLYILGRDLELALGIGRYL----------AVYG 102
Query: 122 ILL---AYIVFYITNDTSELSHCAIGFSAVLFAMKTIL--TRLQPDAYQQILNINVKAIY 176
I L + V +D + + + ++ AM I+ R+ P I+ NV
Sbjct: 103 IALLGGSAAVMLFEDDRALTAGASGAIYGLMGAMLVIVLKARVSPVPVLLIIGFNV---- 158
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
++ +P S GHL G+ G T
Sbjct: 159 -------VLSFSLPGISVLGHLGGLFFGAAAT 183
>gi|344233876|gb|EGV65746.1| hypothetical protein CANTEDRAFT_112606 [Candida tenuis ATCC 10573]
Length = 284
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D R+ H H N++++ E+ +G + L V L Y LL
Sbjct: 60 DLNRVSFYVLYHTGFTHYLVNILAIAAPMCHFERAHGTVHTGITLNLLAVTAGLQYCLLG 119
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILT----RLQPDAYQQILN---INVKAIYAP 178
++ T IG S ++F+ T QP +++ LN I++ Y+P
Sbjct: 120 SFLYPNTR--------VIGLSGIIFSFVTYFAVKEHEFQPVSFRFPLNGTDISLPTKYSP 171
Query: 179 WFELIIIYLLVPNASFKGHLSGILVG 204
+ L I+ ++ P +SF GHL+GI G
Sbjct: 172 FVSLAIVTVIFPGSSFFGHLAGISSG 197
>gi|325913985|ref|ZP_08176341.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
gi|325539754|gb|EGD11394.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
Length = 202
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 34/131 (25%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
A+ +QR Y RL+ F H D HL +NM++L GR +E V T L
Sbjct: 33 ALDKQRQYDRLVTYGFIHADVGHLVFNMITLFFFGRVIEN---------------VMTQL 77
Query: 120 YYILLAYIVFYIT--------------NDTSELSHCAIG-FSAVLFAMKTILTRLQPDAY 164
+L Y +FY+ N+ + LS A G SAVLFA LQP
Sbjct: 78 TGSMLTYPLFYLAALVVSILPSYLKNQNNPNYLSLGASGAVSAVLFA----FILLQPWTI 133
Query: 165 QQILNINVKAI 175
+L I AI
Sbjct: 134 ILVLFIPAPAI 144
>gi|312086620|ref|XP_003145149.1| hypothetical protein LOAG_09574 [Loa loa]
Length = 121
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 187 LLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMIN 228
+L PNASF GHLSGI+VGL YT P L VVD + +I+
Sbjct: 1 MLTPNASFIGHLSGIIVGLAYTMGP----LKTVVDILESIIS 38
>gi|192360678|ref|YP_001980797.1| peptidase, rhomboid family [Cellvibrio japonicus Ueda107]
gi|190686843|gb|ACE84521.1| peptidase, rhomboid family [Cellvibrio japonicus Ueda107]
Length = 385
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 58 ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT 117
+ + I+ R+Y R I + F H + +HL N++SL + G LE+ +G K+ +++I L+ F+
Sbjct: 209 SKSTIEFREYYRFITAFFLHLNPVHLLINLISLGVLGGMLEQYFGRAKYFNILI-LSTFS 267
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
+F + L A G LF L L +A Q +V +
Sbjct: 268 GW--------IFSLAFSPFNLVVGASGGIFGLFGSYIALKILSKEALQP----SVDPMPF 315
Query: 178 PWFELIIIY-----LLVPNASFKGHLSGILVGLTY 207
W +I+I+ L + N+ F H+ G++ G Y
Sbjct: 316 WWAIIILIFQVISDLYIHNSDFYAHIGGVIGGSLY 350
>gi|299471469|emb|CBN79420.1| Protein secE/sec61-gamma protein; Rhomboid-like protein [Ectocarpus
siliculosus]
Length = 766
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 19/151 (12%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
D ++ D+ RLI F H +H +NM+ + G +E+++GW + S+ + VF +
Sbjct: 467 DLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVASIYLVSGVFGT 526
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ-ILNINVKAIYA 177
+ + + +G S +F + L D +Q +N + ++
Sbjct: 527 IVSAIFV------------PTQVMVGASGAIFG---VFGALWADLWQNWSVNQDRCRMFT 571
Query: 178 PWFELI---IIYLLVPNASFKGHLSGILVGL 205
F L II L+P H G+L+GL
Sbjct: 572 VLFILTAVNIILGLMPFLDNFAHCGGMLMGL 602
>gi|224541443|ref|ZP_03681982.1| hypothetical protein CATMIT_00605 [Catenibacterium mitsuokai DSM
15897]
gi|224525635|gb|EEF94740.1| peptidase, S54 family [Catenibacterium mitsuokai DSM 15897]
Length = 183
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 40 VYLNIFRKPWSTLDV----CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGR 95
VY+N F K T + + V + +Y R I SAF H + +HL+ NM + GR
Sbjct: 9 VYINYFSKDNKTSEAMHLGALYTPYVKNRGEYWRFITSAFIHTEFLHLFMNMYCIFYLGR 68
Query: 96 QLEKIYGWGKFLSLVIFLTVFTSL--YYILLAYIVFYITNDTSELSHCAIGFSAVLFA 151
E I G ++L LV+ V +SL YY Y D+S + IG S + +
Sbjct: 69 LFETILGPVRYLILVLVSIVMSSLATYY--------YSFRDSSVDNSITIGASGLFYG 118
>gi|420236439|ref|ZP_14740922.1| hypothetical protein A200_01381 [Parascardovia denticolens IPLA
20019]
gi|391880266|gb|EIT88760.1| hypothetical protein A200_01381 [Parascardovia denticolens IPLA
20019]
Length = 266
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 75 FEHGDDM-HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
F H D+ H+++NMVSL L G LEK+ G +FL+L + + S+ ++L A + +
Sbjct: 98 FMHSIDISHIFFNMVSLYLAGLSLEKMLGHWEFLALYLVSGLGASVAFLLSA-----LAS 152
Query: 134 DTSELSHCAIGFSAVLFAM--KTILTRLQPDAYQQILNINVKAIYAPWFELIII--YLLV 189
S IG S +F + ++T L+ Q ++ V + LI++ L
Sbjct: 153 GPSSAVASMIGASGAIFGLFGAMVVTALKSPGRQNAWSMVV------FLGLILVVPMLFG 206
Query: 190 PNASFKGHLSGILVG 204
+++ HL G VG
Sbjct: 207 SGVAWQAHLGGFAVG 221
>gi|260579595|ref|ZP_05847464.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258602236|gb|EEW15544.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length = 214
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 19/153 (12%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
++ +A V ++ R++ +AF H D HL +NM+ + L GR +E+ YG LSL++
Sbjct: 32 EMLFNAANVTLFGEWWRILTAAFVHLDPAHLGFNMLLIFLIGRDVERFYGPVVMLSLIVA 91
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRL-QPDAYQQILNIN 171
+L Y + +G+ LFAM L+R+ Q D I+ +
Sbjct: 92 SAAGGAL-------ACMYFQPNVPVGGASTVGYG--LFAMLISLSRIRQRDLRGPIILLL 142
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
V Y+ L+ N S GH+ G+ G
Sbjct: 143 VNLGYS---------LMYSNVSLWGHIGGLAGG 166
>gi|150864296|ref|XP_001383053.2| Rhomboid family proteins Function unknown [Scheffersomyces stipitis
CBS 6054]
gi|149385552|gb|ABN65024.2| Rhomboid family proteins Function unknown [Scheffersomyces stipitis
CBS 6054]
Length = 282
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+ + D R+ H H + N+++L EK +G + L V T+L
Sbjct: 54 ALGELDLNRVSFYPLFHSGLFHWFLNVLTLFQPLAIFEKTHGTVYTGITLNLLAVLTALQ 113
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTR----LQPDAY---QQILNINVK 173
Y + Y ++ T+ AIG SA++F+ L ++P+ Q+ I +
Sbjct: 114 YCIAGYWLYPGTH--------AIGLSALVFSFLAWLAYKEHFVRPNIVLYRQEGSEIKLP 165
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
++AP L I +L+P +SF GHL+G+ G
Sbjct: 166 TLFAPVAYLFISMILLPGSSFWGHLAGLFAG 196
>gi|358010724|ref|ZP_09142534.1| hypothetical protein AP8-3_04340 [Acinetobacter sp. P8-3-8]
Length = 205
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
+ I+Q Y R + F H D MHL++NM +L GR +E + +LS + F+ + S
Sbjct: 36 SAIKQGQYDRFLTHGFIHNDGMHLFFNMFTLYFFGRSIEWFF--RDYLSGMGFVLFYCSA 93
Query: 120 YYILLAYIVFYI--TNDTSELSHCAIG------FSAVLF 150
I++A I YI N S S A G FSA+LF
Sbjct: 94 --IIVAAIPSYIQYRNLNSYRSLGASGAVNAVLFSAILF 130
>gi|46446094|ref|YP_007459.1| glpG protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399735|emb|CAF23184.1| putative glpG protein [Candidatus Protochlamydia amoebophila UWE25]
Length = 391
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I++ RL A HGD HL++NM+ L++ G+QLE ++L ++ +F++
Sbjct: 233 IREGQIWRLFSPALLHGDIFHLFFNMLWLMVLGKQLELRLKASRYLLFILITGIFSNTSQ 292
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQP----DAYQQ----------- 166
L++ F +GFS +L AM T + Q + YQ
Sbjct: 293 YLMSGSNF-------------VGFSGILCAMLTFIWIRQNQTPWEGYQLDRLSFSFMMFF 339
Query: 167 ILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
I+ + + + + + E + P+ + HLSG L+G+
Sbjct: 340 IIGMALLQLVSLFLEKFFQIEIAPHIANTAHLSGALIGI 378
>gi|336391270|ref|ZP_08572669.1| membrane-associated serine protease [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 209
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +IQQ + RLI+ F H MH+ N V+L G Q+E ++G +F +
Sbjct: 35 NILIQQGQWWRLIMPIFLHSGLMHIAVNSVTLYFIGMQIESLFGHWRF-----------T 83
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L Y LL+ IV I + + ++G S LF + L +A++Q N ++A+
Sbjct: 84 LIY-LLSGIVGNIASFVFN-TGISVGASTALFGLFGAFFML-VEAFRQ--NTAIRAM-GQ 137
Query: 179 WFELIIIY-----LLVPNASFKGHLSGILVGLTYTD 209
F L I+ L P GH+ G+L G +
Sbjct: 138 QFALFIVLNLAFDLFNPGIDLAGHVGGLLGGFLVAN 173
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++ + R++ + F HG +HL +NM +L GR +E +YG KFL + +
Sbjct: 44 LVSSGQWYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENVYGTDKFLFFYFSTGIIGN-- 101
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
LA FY + + S G VLFA R P + I + P
Sbjct: 102 ---LATQFFYYNSFSVGASGAIFGLVGVLFAAG--FRRDTPYTLKPI----TGTAFLPMI 152
Query: 181 ELIIIYLLVPNASFK--GHLSGILVGLT 206
+ I +P ++ HL G L G+
Sbjct: 153 LVNIFLGFIPGSNINNAAHLGGFLSGMA 180
>gi|311739300|ref|ZP_07713136.1| rhomboid family protein [Corynebacterium pseudogenitalium ATCC
33035]
gi|311305598|gb|EFQ81665.1| rhomboid family protein [Corynebacterium pseudogenitalium ATCC
33035]
Length = 217
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 31/153 (20%)
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYIT 132
S F H D HL NMV L+L GR++E+ G T+LY L AY++ +
Sbjct: 65 SEFMHLDAGHLAVNMVMLLLIGREVERALG--------------TALY--LAAYLISCLG 108
Query: 133 ND----TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
T + +G S LFA+ +L AY+Q ++++A A + L
Sbjct: 109 ASAMILTFDFETPTVGASGALFALMAMLV----GAYRQ-RGLDLRAPIALVLANVAYTFL 163
Query: 189 VPNASFKGHLSGILVGLT-----YTDTP-IGWG 215
S GHL G+ G+ Y +P + WG
Sbjct: 164 ADGVSLWGHLGGLCTGIVLSLFLYRKSPTLRWG 196
>gi|373955987|ref|ZP_09615947.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
gi|373892587|gb|EHQ28484.1| Rhomboid family protein [Mucilaginibacter paludis DSM 18603]
Length = 288
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F HG +HL +NM+ G+ E+ G K ++L I + +L Y+ +AY VF + +
Sbjct: 78 FMHGGILHLLFNMLWFFWIGQIFEEYLGGKKLITLYILGGLAGALVYV-VAYNVFPLFTE 136
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV----- 189
E ++ +G +A + A+ L PD ++ A+ W L I+Y+L
Sbjct: 137 VKETANT-VGATASVMAVIVGTATLLPDYTISMMFFG--AVKLKW--LAIVYILFDLLSI 191
Query: 190 --PNASFK-GHLSGILVGLTY 207
PNA + HL G L+G Y
Sbjct: 192 VGPNAGGEFAHLGGALLGFIY 212
>gi|401623399|gb|EJS41500.1| rbd2p [Saccharomyces arboricola H-6]
Length = 262
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 28/217 (12%)
Query: 27 PPATL--GLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
PPA L GLV + V+L F D+ ++ +++ + + RL L H HL
Sbjct: 13 PPAALTTGLVVFLTAVFLLSFVFALGD-DLSLAPESLFKLQ-MSRLSLYPLIHLSLPHLL 70
Query: 85 YNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC 141
+N++++ E+ +G G FL+L +F + Y LL +++
Sbjct: 71 FNVLAIWAPLNLFEETHGTVYTGVFLNLS---ALFAGILYCLLGKLLY-----PGVFVAG 122
Query: 142 AIGFSAVLFAMKTIL-TRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
A G+ LFA + ++++P +V +Y P LI I ++VP +SF GH G
Sbjct: 123 ASGWCFTLFAYYSYKESQVRPRTRLFHTEYSVPTLYTPIALLIAIAVIVPGSSFWGHFFG 182
Query: 201 ILVG--LTYTD------TPIGWGLDYVVDKCQEMING 229
+ VG + Y + TP GW ++ K + ++G
Sbjct: 183 LCVGYAIGYKESWFHKITPPGW----IITKIENSLDG 215
>gi|116628516|ref|YP_821135.1| membrane-associated serine protease [Streptococcus thermophilus
LMD-9]
gi|387910529|ref|YP_006340835.1| membrane-associated serine protease [Streptococcus thermophilus
MN-ZLW-002]
gi|116101793|gb|ABJ66939.1| Membrane-associated serine protease [Streptococcus thermophilus
LMD-9]
gi|387575464|gb|AFJ84170.1| membrane-associated serine protease [Streptococcus thermophilus
MN-ZLW-002]
Length = 224
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI F H H +NM++L GR E+I+G +FL L + V + A+ +
Sbjct: 60 RLITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGN------AFTL 113
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
F+ N A G S LF + + + L ++ +LN + A +I L
Sbjct: 114 FFTPNV------IAAGASTSLFGLFSAIVILGYYSHSPLLNQLGRNYLALIVINLIFNLF 167
Query: 189 VPNASFKGHLSGILVG 204
P+ GHL G++ G
Sbjct: 168 TPSVGITGHLGGLVGG 183
>gi|187735290|ref|YP_001877402.1| rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425342|gb|ACD04621.1| Rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
Length = 291
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ F H + H+ +NM++L G +E+ +G +FL +F V +L+ LL Y+
Sbjct: 78 RLLTYQFLHANLGHIMFNMIALWFFGPVVEERFGHWRFLLYYLFCGVAAALFSSLLGYMG 137
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL----NINVKAI---YAPWFE 181
F+ D +G S ++ + L P A Q+L N++V+
Sbjct: 138 FF---DPEWRFIPMVGASGSIYGIMAACAVLFPHARVQLLFPPVNLSVRQFALAVLGVAA 194
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYT 208
+II+ GHL G+ G T
Sbjct: 195 AVIIFQWNNAGGEAGHLGGMFAGFILT 221
>gi|408672893|ref|YP_006872641.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387854517|gb|AFK02614.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 234
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
AV ++++Y R I S F H D MHL++NM +L G +E+++
Sbjct: 60 AVERRKEYHRFITSGFVHADYMHLFFNMYTLYSFGEFMEQVF 101
>gi|116787110|gb|ABK24379.1| unknown [Picea sitchensis]
Length = 308
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 35/188 (18%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
N+ L+ G+ LE ++G +FL + + TS+ A ++FYIT L GF
Sbjct: 69 NIACLLFSGKLLEPVWGPREFLKFIAAVNFSTSISIFFTAILLFYITGRDEFLYTPLSGF 128
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE--LIIIYLLV-------------- 189
VL + ++ P YQ+I +V + A W ++++ ++V
Sbjct: 129 HGVLSGFLVGVKQIMP--YQEITAFHVFKMQAKWLPSLMVLVSIVVSFLTTESMLYLPFV 186
Query: 190 -----------------PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
P + KGH S T+ + +D CQ++ G Q
Sbjct: 187 IFGTYWSWLYLRYFQRNPETNLKGHRSDDFAFSTFFPGFLRPIIDAFASICQKLFCGNAQ 246
Query: 233 EDMGEEQK 240
E+
Sbjct: 247 SSSDEQDS 254
>gi|387815997|ref|YP_005431492.1| hypothetical protein MARHY3615 [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381341022|emb|CCG97069.1| conserved hypothetical protein, Rhomboid protease domain
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 364
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 27 PPATLGLVFLQSMVY----LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
P T LVFL ++V+ L+ W +++ +++D +L+ F HG MH
Sbjct: 153 PWVTRTLVFLCALVFGVGALSAEANEWIFVNLGLNSDTQSPSHFVLQLLSYQFVHGGLMH 212
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
L NM L + G LE G G FL+L +F + +L +LL
Sbjct: 213 LVGNMYFLWIIGDNLEDALGHGAFLALYLFAGIMAALVELLL 254
>gi|332638068|ref|ZP_08416931.1| membrane-associated serine protease [Weissella cibaria KACC 11862]
Length = 233
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 28 PATLGLVFLQSMVYL-NIFRKPWSTLDVCI-------SADAVIQQRDYKRLILSAFEHGD 79
PAT GLV + +VYL + + T++ + + AV Q + RLI + F H
Sbjct: 13 PATAGLVTVMVLVYLWEVLQAHSFTINSQVLFHSGAQFSPAVYQLHQWWRLITAGFLHVT 72
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
HL +NM++L GR LE G +FL+L FLTV +
Sbjct: 73 FSHLAFNMITLYFIGRLLEIELGPWRFLAL-FFLTVISG 110
>gi|325285171|ref|YP_004260961.1| peptidase S54, rhomboid domain-containing protein [Cellulophaga
lytica DSM 7489]
gi|324320625|gb|ADY28090.1| Peptidase S54, rhomboid domain protein [Cellulophaga lytica DSM
7489]
Length = 293
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 33 LVFLQSMVYLNIFRKP----WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMV 88
++FL +++ +N+FR P W L I D ++Q ++ +F H H+++NM+
Sbjct: 24 VIFLLNLILVNLFRLPNIVNWFNLPENI-GDFILQPWS---IVTYSFFHSGFGHIFWNML 79
Query: 89 SLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY-IVFYITNDTSELSHCAIGFSA 147
L GR ++ KFL+ V FL V + ++ Y + + N L + G +A
Sbjct: 80 MLYFFGRTFLNLFDAKKFLN-VYFLGVIVGGFLFMIGYNTIPALLNQNGVLIGASAGVTA 138
Query: 148 VLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG----HLSGILV 203
+L + T L P+ ++L I++K + +++ L + N G HL G +
Sbjct: 139 ILIYVCTYL----PNQTVRLLIIDLKLWHLGVIIVVLDLLRLSNGQNVGGMLSHLGGAAL 194
Query: 204 GLTYTD-----TPIGWGLDYVVDKCQEMINGEEQEDM 235
G Y IG G +D + +++ M
Sbjct: 195 GYFYAKQLMNGKDIGAGFGRFMDSIANLFRRDKKAPM 231
>gi|152993649|ref|YP_001359370.1| hypothetical protein SUN_2072 [Sulfurovum sp. NBC37-1]
gi|151425510|dbj|BAF73013.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 192
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL + F HG H+ NMVSL + GR +E + +LS+ +F + L
Sbjct: 18 VLKGEWWRLFTAMFLHGGMTHILMNMVSLYIIGRGMEMYFDTKSYLSIYLFSGLLGGL-- 75
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+ YI + IG S +F + L A+++ L + KA +
Sbjct: 76 -----VSLYI-----HPASVGIGASGAIFGVFGALAGFF-IAHRKHLGKHTKAFMKEFTV 124
Query: 182 LIIIYLL----VPNASFKGHLSGILVGL 205
+I+I L+ +PN H++G +VG
Sbjct: 125 IIVINLVIGFSIPNVDVSAHVAGTVVGF 152
>gi|335420156|ref|ZP_08551197.1| hypothetical protein SSPSH_05704 [Salinisphaera shabanensis E1L3A]
gi|335420944|ref|ZP_08551976.1| hypothetical protein SSPSH_09685 [Salinisphaera shabanensis E1L3A]
gi|334893514|gb|EGM31727.1| hypothetical protein SSPSH_09685 [Salinisphaera shabanensis E1L3A]
gi|334895259|gb|EGM33435.1| hypothetical protein SSPSH_05704 [Salinisphaera shabanensis E1L3A]
Length = 201
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 35/173 (20%)
Query: 30 TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVS 89
T+ L+ L V F+ ++ I + + +Y+RL+ F H D HL +NM++
Sbjct: 4 TIALIALTCAVSFTAFQNR-DMMERLIFWPPAVNRGEYQRLLTHGFIHADGQHLLFNMIT 62
Query: 90 LILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY---ILLAYIVFYI--TNDTSELSHCAIG 144
L GR +E + +++ V F +L+Y +++A + Y+ ND+ S A G
Sbjct: 63 LFFFGRVIEGFF--ERYIGAVGF-----ALFYLVGVVVAIVPSYLQHRNDSRYRSLGASG 115
Query: 145 -FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
SAVLFA I APW + + + +P + G
Sbjct: 116 AVSAVLFAYVLI---------------------APWSTIYVFFFPIPAIVYAG 147
>gi|196231140|ref|ZP_03130000.1| Rhomboid family protein [Chthoniobacter flavus Ellin428]
gi|196224970|gb|EDY19480.1| Rhomboid family protein [Chthoniobacter flavus Ellin428]
Length = 262
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 21/166 (12%)
Query: 18 ILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEH 77
++ LGA + L I R+ W LD D VI+ + + + H
Sbjct: 3 VVALGAGAFGAQFITETLLSGQPTHEILRQ-WLALD-----DGVIKSGQWWKFLSFGLLH 56
Query: 78 GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI---LLAYIVFYITND 134
D + + N++ L L GR+LE I G F S+ Y+ LL + +
Sbjct: 57 ADPVQMAVNLLLLFLAGRELEPIVGARHF-----------SIIYVVGNLLGGLAHWTFMS 105
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ-ILNINVKAIYAPW 179
L + G SAV+ A TIL L+ + ++ + ++A Y W
Sbjct: 106 AKPLMGVSAGVSAVIVAYTTILPELEVTCHLLFVMPVRIRAKYLTW 151
>gi|377562581|ref|ZP_09791962.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
gi|377520256|dbj|GAB37127.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
Length = 212
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 16/153 (10%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
A + +Y RL+ + F H H+ NM+SL + GR LE G G++L +V F+ +F
Sbjct: 29 AYVADGEYWRLLTAGFLHFTVAHIALNMISLYILGRDLEAALGLGRYL-MVYFIALFGGS 87
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
++L F N S + AI + + ++ P I+ IN
Sbjct: 88 AAVML----FEAANVRSAGASGAIYGLMGAVLVVVLKAKVSPTGVITIIVIN-------- 135
Query: 180 FELIIIYLLVPNASFKGHLSGILVGLTYTDTPI 212
++ + +P S H+ G++ G T I
Sbjct: 136 ---LVFSVTMPGISLAAHVGGLVFGAAATAAII 165
>gi|254549044|ref|ZP_05139491.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length = 247
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
LVF+ + + + R+ + + AV + Y RL+ SAF H MHL NM +L +
Sbjct: 47 LVFVMQVTVMGLERQ------LALWPPAVASGQTY-RLVTSAFLHYGAMHLLLNMWALYV 99
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
G LE G +F +L ++L +L Y++ + T+ S G LF
Sbjct: 100 VGPPLEMWLGRLRFGALY----AVSALGGSVLVYLIAPLNTATAGASGAVFG----LFGA 151
Query: 153 KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL----LVPNASFKGHLSGI----LVG 204
++ R L+++V+ + A LI+I L L P S++GH+ G+ LV
Sbjct: 152 TFMVARR--------LHLDVRWVVA----LIVINLAFTFLAPAISWQGHVGGLVTGALVA 199
Query: 205 LTYTDTP 211
TY P
Sbjct: 200 ATYVYAP 206
>gi|333917705|ref|YP_004491286.1| rhomboid family protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333479926|gb|AEF38486.1| Rhomboid family protein [Amycolicicoccus subflavus DQS3-9A1]
Length = 255
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +Y+RLI S F H +HL NM +L + GR++E + G ++L++ SL
Sbjct: 73 VAAGEYERLIGSGFLHYGPIHLLVNMFALFIVGREIELVLGRWRYLAVYAI-----SLLS 127
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ--PDAYQQILNINV 172
A + I T+ S G A+ ILTRL+ P I+ +NV
Sbjct: 128 GSAAVMWMQIDAATAGASGAVFGL---FGALAVILTRLRQNPTGILVIIGLNV 177
>gi|375105058|ref|ZP_09751319.1| putative membrane protein [Burkholderiales bacterium JOSHI_001]
gi|374665789|gb|EHR70574.1| putative membrane protein [Burkholderiales bacterium JOSHI_001]
Length = 195
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 24 DTIPPATLGLVFLQSMVY-LNIFRKPWSTLDVCISADAVIQQRDYKRLILS-AFEHGDDM 81
+PP T L+ + + +Y L +F W ++ ++ + + Y + S AF HG M
Sbjct: 2 PPLPPVTQALMLICTAMYCLGVF---WPGIEGPLALWPIGSGQFYPWQLFSYAFLHGSMM 58
Query: 82 HLYYNMVSLILKGRQLEKIYG 102
HL +NM+ L + G +LE+++G
Sbjct: 59 HLLFNMLGLWMFGSELERLWG 79
>gi|333371980|ref|ZP_08463918.1| rhomboid protease GluP [Desmospora sp. 8437]
gi|332975161|gb|EGK12063.1| rhomboid protease GluP [Desmospora sp. 8437]
Length = 215
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDV------CISADAVIQQRDYKRLILSAFEHGDDM 81
P G++ +Q++++L + ST + + A++ ++ RL+ F H
Sbjct: 33 PVVTGILAIQTLLFLLMTISGGSTNPLVLLRFGALENTALLIDGEWWRLVTPVFLHIGIT 92
Query: 82 HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC 141
H +N SL L G QLE ++G +F++L + + +L + L + I+ S +
Sbjct: 93 HFLFNSFSLYLLGPQLEWLFGRWRFIALYLLTGIMGNLATVYLGEV--GISAGASGAIYG 150
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQIL---NINVKAIYAPWFELIIIYLLVPNASFKGHL 198
+G LF + + PD + +L IN ++I +L P + HL
Sbjct: 151 LLGVYVYLFLFRR--GSMDPDTGKGLLALVGIN-----------LVISILTPTINLTAHL 197
Query: 199 SGILVG 204
G++ G
Sbjct: 198 GGLVAG 203
>gi|372325402|ref|ZP_09519991.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
gi|366984210|gb|EHN59609.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
Length = 234
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
D++ ++ R F H MH++ NM++L++ G +EK++G GKFL
Sbjct: 53 GVDSLFMSGEWYRAFTPIFLHASLMHIFSNMLTLVIVGPFVEKLFGKGKFL 103
>gi|342885334|gb|EGU85375.1| hypothetical protein FOXB_04086 [Fusarium oxysporum Fo5176]
Length = 267
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 24/165 (14%)
Query: 72 LSAFE--HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF---LTVFTSLYYILLAY 126
LS F H + +H N+ +L + E +G SL +F LT ++ Y+L+
Sbjct: 64 LSTFPLIHLNIIHAILNLAALTPLMERFENEHG--TLTSLALFFGPLTSIPAVMYVLIER 121
Query: 127 IVFYITNDTSELSHCAIGFSA---VLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
VF++ +H +G S L AM++I T + + + + +++ P +
Sbjct: 122 YVFHV-------NHGVLGASMWVFTLLAMESIQT-YKTNPHFVVGTVHIPTWTTPLIMCM 173
Query: 184 IIYLLVPNASFKGHLSGILV----GLTYTD--TPIGWGLDYVVDK 222
++ LVP S GHL GI + G Y P WGL +V ++
Sbjct: 174 VVRALVPGTSLLGHLCGIAIGYVAGFGYAKLLAPPEWGLRWVENR 218
>gi|433640241|ref|YP_007286000.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
gi|432156789|emb|CCK54054.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
Length = 249
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
LVF+ + + + R+ + + AV + Y RL+ SAF H MHL NM +L +
Sbjct: 49 LVFVMQVTVMGLERQ------LALWPPAVASGQTY-RLVTSAFLHYGAMHLLLNMWALYV 101
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
G LE G +F +L ++L +L Y++ + T+ S G LF
Sbjct: 102 VGPPLEMWLGRLRFGALY----AVSALGGSVLVYLIAPLNTATAGASGAVFG----LFGA 153
Query: 153 KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL----LVPNASFKGHLSGI----LVG 204
++ R L+++V+ + A LI+I L L P S++GH+ G+ LV
Sbjct: 154 TFMVARR--------LHLDVRWVVA----LIVINLAFTFLAPAISWQGHVGGLVTGALVA 201
Query: 205 LTYTDTP 211
TY P
Sbjct: 202 ATYVYAP 208
>gi|406669543|ref|ZP_11076813.1| hypothetical protein HMPREF9707_00716 [Facklamia ignava CCUG 37419]
gi|405583239|gb|EKB57207.1| hypothetical protein HMPREF9707_00716 [Facklamia ignava CCUG 37419]
Length = 228
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 26 IPPATLGLVFLQSMVY---LNIFRKPWSTLDVCISADA-----VIQQRDYKRLILSAFEH 77
+P T GL+ L VY L +R ++D I A V Q ++ R I ++F H
Sbjct: 11 VPLVTYGLITLNIAVYGWMLYHYRTT-ESIDALIQTGAMYSPLVYLQNEWWRFITASFIH 69
Query: 78 GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE 137
H +NM++L G+ +E + G F + +F V +L+ L N ++
Sbjct: 70 IGFEHFIFNMITLYFLGKDIEALLGHFNFSCIYLFACVGGNLFSSLAN------LNVSAG 123
Query: 138 LSHCAIGFSAVLFAMKTILTRLQPDAY 164
S G LFA IL+ L PD+Y
Sbjct: 124 ASTGIFG----LFACYIILSYLNPDSY 146
>gi|116754601|ref|YP_843719.1| rhomboid family protein [Methanosaeta thermophila PT]
gi|116666052|gb|ABK15079.1| Rhomboid family protein [Methanosaeta thermophila PT]
Length = 205
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 29 ATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMV 88
A+L ++ L +V + + PW+ A+++ R + L+ F H D HL++NM+
Sbjct: 22 ASLAIIALCILVSIAMAIDPWAVRGYLSLNPALVESRPWT-LVTHIFVHADIGHLFWNML 80
Query: 89 SLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+L+ G +LE+ G FL + +F + +L+A
Sbjct: 81 ALLFFGTELERRVGERNFLLVFFASGIFGGIIEMLVA 117
>gi|120556610|ref|YP_960961.1| rhomboid family protein [Marinobacter aquaeolei VT8]
gi|120326459|gb|ABM20774.1| Rhomboid family protein [Marinobacter aquaeolei VT8]
Length = 364
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 27 PPATLGLVFLQSMVY----LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMH 82
P T LVFL ++V+ L+ W +++ +++D +L+ F HG MH
Sbjct: 153 PWVTRTLVFLCALVFGVGALSAEANEWIFVNLGLNSDTQSPSHFVLQLLSYQFVHGGLMH 212
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
L NM L + G LE G G FL+L +F + +L +LL
Sbjct: 213 LVGNMYFLWIIGDNLEDALGHGAFLALYLFAGIMAALAELLL 254
>gi|378550610|ref|ZP_09825826.1| hypothetical protein CCH26_11002 [Citricoccus sp. CH26A]
Length = 215
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 69 RLILSAFEH--GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
R++ SAF H G+ +H+ N+ +L + GR LE + GW +FL+L
Sbjct: 42 RMLTSAFLHSPGNPLHILLNLFTLWMMGRVLEPVLGWARFLAL 84
>gi|15607252|ref|NP_214624.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
gi|31791288|ref|NP_853781.1| hypothetical protein Mb0114 [Mycobacterium bovis AF2122/97]
gi|121636023|ref|YP_976246.1| integral membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659873|ref|YP_001281396.1| rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|167967299|ref|ZP_02549576.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|224988496|ref|YP_002643183.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|254366565|ref|ZP_04982609.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|289441479|ref|ZP_06431223.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568003|ref|ZP_06448230.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289572690|ref|ZP_06452917.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289748582|ref|ZP_06507960.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289756172|ref|ZP_06515550.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289760210|ref|ZP_06519588.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|289764227|ref|ZP_06523605.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|294992953|ref|ZP_06798644.1| putative integral membrane protein [Mycobacterium tuberculosis 210]
gi|297632583|ref|ZP_06950363.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297729557|ref|ZP_06958675.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|298527502|ref|ZP_07014911.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|306774194|ref|ZP_07412531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|306778939|ref|ZP_07417276.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306782726|ref|ZP_07421048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787094|ref|ZP_07425416.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791651|ref|ZP_07429953.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|306798472|ref|ZP_07436774.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|306801688|ref|ZP_07438356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|306805900|ref|ZP_07442568.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|306974529|ref|ZP_07487190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|307082237|ref|ZP_07491407.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|313656884|ref|ZP_07813764.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|339630194|ref|YP_004721836.1| hypothetical protein MAF_01110 [Mycobacterium africanum GM041182]
gi|340625145|ref|YP_004743597.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|378769856|ref|YP_005169589.1| hypothetical protein BCGMEX_0114 [Mycobacterium bovis BCG str.
Mexico]
gi|385996882|ref|YP_005915180.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|386003192|ref|YP_005921471.1| hypothetical protein MRGA423_00715 [Mycobacterium tuberculosis
RGTB423]
gi|392384830|ref|YP_005306459.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|397671894|ref|YP_006513428.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|424806593|ref|ZP_18232024.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|433625211|ref|YP_007258840.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|31616873|emb|CAD92975.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121491670|emb|CAL70128.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134152077|gb|EBA44122.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148504025|gb|ABQ71834.1| Rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|224771609|dbj|BAH24415.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289414398|gb|EFD11638.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289537121|gb|EFD41699.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289541756|gb|EFD45405.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689169|gb|EFD56598.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289696759|gb|EFD64188.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289711733|gb|EFD75749.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|289715774|gb|EFD79786.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|298497296|gb|EFI32590.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|308217202|gb|EFO76601.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308328061|gb|EFP16912.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308332433|gb|EFP21284.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|308336197|gb|EFP25048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308339800|gb|EFP28651.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308341295|gb|EFP30146.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|308347577|gb|EFP36428.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308351519|gb|EFP40370.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|308356167|gb|EFP45018.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308360107|gb|EFP48958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|326905869|gb|EGE52802.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|339329550|emb|CCC25185.1| putative conserved integral membrane protein [Mycobacterium
africanum GM041182]
gi|340003335|emb|CCC42454.1| putative conserved integral membrane protein [Mycobacterium
canettii CIPT 140010059]
gi|341600039|emb|CCC62707.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344217928|gb|AEM98558.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|356592177|gb|AET17406.1| Conserved integral membrane protein [Mycobacterium bovis BCG str.
Mexico]
gi|378543381|emb|CCE35652.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380723680|gb|AFE11475.1| putative integral membrane protein [Mycobacterium tuberculosis
RGTB423]
gi|395136798|gb|AFN47957.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|432152817|emb|CCK50026.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|440579558|emb|CCG09961.1| putative CONSERVED INTEGRAL membrane protein [Mycobacterium
tuberculosis 7199-99]
gi|444893582|emb|CCP42835.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
Length = 249
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
LVF+ + + + R+ + + AV + Y RL+ SAF H MHL NM +L +
Sbjct: 49 LVFVMQVTVMGLERQ------LALWPPAVASGQTY-RLVTSAFLHYGAMHLLLNMWALYV 101
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
G LE G +F +L ++L +L Y++ + T+ S G LF
Sbjct: 102 VGPPLEMWLGRLRFGALY----AVSALGGSVLVYLIAPLNTATAGASGAVFG----LFGA 153
Query: 153 KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL----LVPNASFKGHLSGI----LVG 204
++ R L+++V+ + A LI+I L L P S++GH+ G+ LV
Sbjct: 154 TFMVARR--------LHLDVRWVVA----LIVINLAFTFLAPAISWQGHVGGLVTGALVA 201
Query: 205 LTYTDTP 211
TY P
Sbjct: 202 ATYVYAP 208
>gi|21222264|ref|NP_628043.1| hypothetical protein SCO3855 [Streptomyces coelicolor A3(2)]
gi|289770532|ref|ZP_06529910.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5102807|emb|CAB45222.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700731|gb|EFD68160.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 297
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL+ + F H + H+ +NM+SL G LE G ++L+L + + L
Sbjct: 129 VAEGEWYRLVTTMFTHEEIWHIGFNMISLWFLGGPLEAALGRARYLALYL----VSGLAG 184
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LAY++ T T S G LF L R LN +++ P
Sbjct: 185 SVLAYLLASPTTATLGASGAIFG----LFGATAALVRR--------LNADMR----PVVI 228
Query: 182 LIIIYLLVP----NASFKGHLSGILVG 204
L++I L+ N S++ H+ G++ G
Sbjct: 229 LLVISLIFTFTRGNISWQAHVGGLVAG 255
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + + RL+ + F H +HL NM +L + G+ LE + G +F +L F + +
Sbjct: 100 VAEGQWYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAAL-----YFIAGFG 154
Query: 122 ILLAYIVFYITNDTSELSHCAI-GFSAVLFAMKTILTRLQPD--AYQQILNINVKAIYAP 178
+A VF N S + AI G A +F I+ RL D A IL IN
Sbjct: 155 GNVAVYVFSPPNQMSAGASTAIFGLFAAIF---VIMRRLGRDTSAILPILVIN------- 204
Query: 179 WFELIIIYLLVPNASFKGHLSGILVG 204
+I VP S GHL G++ G
Sbjct: 205 ----LIFTFTVPQISIAGHLGGLVFG 226
>gi|320168488|gb|EFW45387.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 327
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA------PWFELIIIYLLVPNASFK 195
+IG S V+F++ I +A ++ AI+ PW L++I +P+ SF
Sbjct: 138 SIGMSGVIFSLLVISIHRTANASAANEQRSLCAIFTVPSSVYPWALLLVIQAFIPSVSFL 197
Query: 196 GHLSGILVG 204
GHLSGILVG
Sbjct: 198 GHLSGILVG 206
>gi|93005136|ref|YP_579573.1| rhomboid-like protein [Psychrobacter cryohalolentis K5]
gi|92392814|gb|ABE74089.1| Rhomboid-like protein [Psychrobacter cryohalolentis K5]
Length = 230
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + R + F H D MHL +NM +L GR +E +Y KFL FL L+Y
Sbjct: 64 VNNGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAIEGLY--QKFLFGYGFL-----LFY 116
Query: 122 IL---LAYIVFYITNDTSELSHCAI----GFSAVLFAM 152
+L +A I YI + S S+ ++ G SAVLFA
Sbjct: 117 VLAIIVAMIPSYIKHKQSA-SYLSLGASGGVSAVLFAF 153
>gi|333368401|ref|ZP_08460601.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
gi|332977324|gb|EGK14112.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
Length = 206
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+ + ++ R I F H D HL +NM +L GR +E+ + +FL FL V+ L
Sbjct: 39 AVNKGEWYRFITHGFIHADSTHLLFNMFTLYFFGRAVERFF--NQFLGGFGFLAVY--LG 94
Query: 121 YILLAYIVFYI--TNDTSELSHCAI-GFSAVLFA 151
I++A I Y+ ND + S A G SA+LF+
Sbjct: 95 AIIVAMIPSYLQHKNDANYRSLGASGGVSAILFS 128
>gi|305666512|ref|YP_003862799.1| putative transmembrane rhomboid family protein [Maribacter sp.
HTCC2170]
gi|88708779|gb|EAR01014.1| putative transmembrane rhomboid family protein [Maribacter sp.
HTCC2170]
Length = 291
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
+I +F H H+++NM+ L GR ++ +FL+ V FL V + +++Y VF
Sbjct: 64 IITYSFFHAGLGHIFWNMLVLYFVGRIFLNLFNGKRFLN-VYFLGVILGGLFFMVSYNVF 122
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
+++ IG SA + A+ + P+ +++ N+K Y F I++ LV
Sbjct: 123 ---PAFFKVNAALIGASAGVRAILIFICAYIPNQEVRLIVFNIKLWYIGAF--IVLTDLV 177
Query: 190 -------PNASFKGHLSGILVGLTYT-----DTPIGWGLDYVVDKCQEMINGEEQE 233
P F HL G L+G Y IG G +VD + E++
Sbjct: 178 QLSMGINPGGQF-AHLGGALLGYVYARQLLKGKDIGEGFSRIVDSIANLFKKSEKK 232
>gi|46127153|ref|XP_388130.1| hypothetical protein FG07954.1 [Gibberella zeae PH-1]
gi|83288432|sp|Q4I4A4.1|RBD2_GIBZE RecName: Full=Rhomboid protein 2
Length = 267
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 24/165 (14%)
Query: 72 LSAFE--HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF---LTVFTSLYYILLAY 126
LS F H + +H N+++L + E +G SL +F LT ++ Y+L+
Sbjct: 64 LSTFPLIHLNVIHAILNLLALTPLMERFETEHG--TLTSLALFFGPLTSIPAVAYVLIER 121
Query: 127 IVFYITNDTSELSHCAIGFSA---VLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
+F +H +G S L AM++I T + + + I ++N+ P +
Sbjct: 122 CIF-------RANHGVLGASMWVFTLLAMESIQT-YKSNPHFVIGSVNIPTWTTPLIMSL 173
Query: 184 IIYLLVPNASFKGHLSGILV----GLTYTD--TPIGWGLDYVVDK 222
++ L+P S GHL GI + G Y P WGL +V ++
Sbjct: 174 VVAALIPGTSLLGHLCGIAIGYVAGFGYAKLLAPPEWGLRWVENR 218
>gi|403714833|ref|ZP_10940699.1| rhomboid family protein [Kineosphaera limosa NBRC 100340]
gi|403211161|dbj|GAB95382.1| rhomboid family protein [Kineosphaera limosa NBRC 100340]
Length = 213
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 69 RLILSAFEHGDDM--HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
R + SAF H M H+ +NM+ L G+ LE + GW +FL+L + + S+ Y+LLA
Sbjct: 28 RFLTSAFLHSPTMFAHILFNMLCLWSIGQWLEPMLGWARFLTLYLVSALGGSVGYLLLA 86
>gi|345022776|ref|ZP_08786389.1| hypothetical protein OTW25_15910 [Ornithinibacillus scapharcae
TW25]
Length = 254
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
D+ + +I Q +Y R I F HG MH+ +N SL+L G LE++ G FL
Sbjct: 46 DLGVGHHYMIHQGEYWRFITPIFLHGGLMHMLFNSFSLVLFGPALERMIGKSMFL 100
>gi|255326467|ref|ZP_05367549.1| rhomboid family protein [Rothia mucilaginosa ATCC 25296]
gi|255296507|gb|EET75842.1| rhomboid family protein [Rothia mucilaginosa ATCC 25296]
Length = 270
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 62 IQQRDYKRLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
+ +Y RLI F H D MH+ +NM+ L + G LE++ G KFL + + T+ L
Sbjct: 109 VHHGEYYRLITHGFVHSQNDPMHMVWNMIYLFIFGVSLERMMGRWKFLFVYMAATLGAGL 168
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ-ILNINVKAIYAP 178
L Y S G F + +L R Q D + +L I + + +
Sbjct: 169 SVYLFDYY-----RGAVGASGGVYGLYGAFFVI--LLLRRQKDTARLFMLLIGIGVVQS- 220
Query: 179 WFELIIIYLLVPNASFKGHLSGILVG 204
L PN S GH G++ G
Sbjct: 221 --------LFHPNISHAGHFGGLVSG 238
>gi|407641198|ref|YP_006804957.1| putative membrane-bound rhomboid protease [Nocardia brasiliensis
ATCC 700358]
gi|407304082|gb|AFT97982.1| putative membrane-bound rhomboid protease [Nocardia brasiliensis
ATCC 700358]
Length = 235
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + R++ S F H +HL NM +L + GR E + G ++LS+ + SL
Sbjct: 61 VADGQWWRVLGSGFLHYGPIHLLLNMFALYVIGRDAELVLGRLRYLSVYL-----VSLLG 115
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
A +VF + T+ S G A+ IL RL+ + Q ++ I +
Sbjct: 116 GAAAVMVFAQDSATAGASGAVYGL---FGAITVILIRLRQNPNQMLILIAIN-------- 164
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYT 208
+ I +P S GHL G+ G T
Sbjct: 165 -VFISFSLPGISLWGHLGGLAAGTLAT 190
>gi|427439986|ref|ZP_18924515.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
gi|425787818|dbj|GAC45303.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
Length = 229
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWST-LDVCISADAVI-----QQRDYKRLILSAFEHGDD 80
P T+ LV L +VYL + ST L V ++ A++ + L S F H
Sbjct: 15 PFVTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAGWASLFTSMFVHIGF 74
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH 140
HL +NM++L GR LE++ G G+FL + + +F + + + F N S +
Sbjct: 75 EHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFAN-----VVSLAFAAPNSISAGAS 129
Query: 141 CAI 143
AI
Sbjct: 130 GAI 132
>gi|71064855|ref|YP_263582.1| rhomboid family protein [Psychrobacter arcticus 273-4]
gi|71037840|gb|AAZ18148.1| possible Rhomboid family protein [Psychrobacter arcticus 273-4]
Length = 202
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+ + R + F H D MHL +NM +L GR +E +Y KFL FL L+
Sbjct: 35 AVNNGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAIEGLY--QKFLFGYGFL-----LF 87
Query: 121 YIL---LAYIVFYITNDTSELSHCAI----GFSAVLFAM 152
Y+L +A I YI + S S+ ++ G SAVLFA
Sbjct: 88 YVLAIIVAMIPSYIKHKQSA-SYLSLGASGGVSAVLFAF 125
>gi|408387854|gb|EKJ67557.1| hypothetical protein FPSE_12265 [Fusarium pseudograminearum CS3096]
Length = 267
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 24/165 (14%)
Query: 72 LSAFE--HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF---LTVFTSLYYILLAY 126
LS F H + +H N+++L + E +G SL +F LT ++ Y+L+
Sbjct: 64 LSTFPLIHLNVIHAILNLLALTPLMERFETEHG--TLTSLALFFGPLTSIPAVVYVLIER 121
Query: 127 IVFYITNDTSELSHCAIGFSA---VLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
+F +H +G S L AM++I T + + + I ++N+ P +
Sbjct: 122 CIF-------RANHGVLGASMWVFTLLAMESIQT-YKSNPHFVIGSVNIPTWTTPLIMSL 173
Query: 184 IIYLLVPNASFKGHLSGILV----GLTYTD--TPIGWGLDYVVDK 222
++ L+P S GHL GI + G Y P WGL +V ++
Sbjct: 174 VVAALIPGTSLLGHLCGIAIGYVAGFGYAKLLAPPEWGLRWVENR 218
>gi|406672776|ref|ZP_11080001.1| hypothetical protein HMPREF9700_00543 [Bergeyella zoohelcum CCUG
30536]
gi|405587320|gb|EKB61048.1| hypothetical protein HMPREF9700_00543 [Bergeyella zoohelcum CCUG
30536]
Length = 243
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 25 TIPPATLGLVFLQSMV-YLNIFRKPWSTLDVCISADAVIQQRDYK--RLILSAFEHGDDM 81
IPPA ++ L ++V L F P L ++A + Q D+K ++I F HGD M
Sbjct: 5 NIPPAVKAILLLNAIVSVLTQFLFP--PLKTFLAAYYPMSQ-DFKIWQIITHMFVHGDFM 61
Query: 82 HLYYNMVSLILKGRQLEKIYGWGKFLSL 109
H+ +NM++L G LE I G KF++
Sbjct: 62 HILFNMLTLFSFGPVLESIMGQKKFITF 89
>gi|120406695|ref|YP_956524.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119959513|gb|ABM16518.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length = 290
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ SAF H H+ +NM++L G LE G +F++L +F + S+ LL +
Sbjct: 119 RLLTSAFLHFSVTHIAFNMLALYFVGAPLEFALGRLRFVALYLFSALGGSVLVYLLTFNA 178
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
T+ S G F + RL D ++ I + F +I
Sbjct: 179 L-----TAGASGAVFGLFGATFVVG---KRLNMDVRSVVMIIGLNLA----FTFLIPLFT 226
Query: 189 VPNASFKGHLSGILVG 204
N S++GH+ G++ G
Sbjct: 227 SQNISWQGHIGGLVTG 242
>gi|319654680|ref|ZP_08008759.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
gi|317393596|gb|EFV74355.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I Q +Y RL+ H H+ +N SL+L G LE++ G +F+ L I ++
Sbjct: 53 IVQGEYWRLLSPIILHSGFPHVLFNSFSLVLFGPVLERMLGKTRFILLYITAGAAANIAT 112
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + + + + F+A++ K +L+R + Q IL I +
Sbjct: 113 LLLEPLTYIHVGASGAIFGLFGYFAAIIVFRKELLSR---ENSQIILTITIIG------- 162
Query: 182 LIIIYLLVPNASFKGHLSGILVG 204
+I+ L PN + HL G+L G
Sbjct: 163 -VIMTFLQPNINVTAHLFGLLAG 184
>gi|378715572|ref|YP_005280461.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
gi|375750275|gb|AFA71095.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
Length = 302
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
Y RL+ + F H +HL NM+SL + GR LE G G+F +++++T +L
Sbjct: 121 QYWRLLTAGFLHYSLIHLAVNMISLYILGRDLEIALGIGRF--VMVYMTA------LLGG 172
Query: 126 YIVFYITNDTSELSHCAIG-FSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPWFEL 182
I S A G ++ AM ++ RL+ P I+ IN
Sbjct: 173 SAAVMIAQSNEARSAGASGAIYGLMGAMLIVVLRLRVSPAPVLTIIAIN----------- 221
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYT 208
+++ +P S H+ G++ G T
Sbjct: 222 LVMSFSIPGISLAAHVGGLVFGAAAT 247
>gi|159475046|ref|XP_001695634.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158275645|gb|EDP01421.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 429
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 142 AIGFSAVLFAMKT-ILTRLQ---PDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGH 197
A+G S++ FA++ + R + P A +L + V A +A +L + ++ P+ASF GH
Sbjct: 263 AVGLSSLAFALQVEAVVRGEARGPGARVWLLGLPVPAAHAWLAQLALTHVTAPDASFAGH 322
Query: 198 LSGILVGLTY 207
++G+L G+ +
Sbjct: 323 VAGVLAGVAH 332
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 26 IPPATLGLVFLQSMVYLN-IFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
+PP TL L +LN + + W C+S V+++R+ RL S H D HL
Sbjct: 125 LPPVTLALTAAAVWRFLNPVMLREW-----CLSPYCVVERREVGRLWRSGLVHLDAPHLL 179
Query: 85 YNMVSLILKGRQLE 98
N+ +LI LE
Sbjct: 180 SNLAALIPDCAALE 193
>gi|329938622|ref|ZP_08288018.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329302113|gb|EGG46005.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 303
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + Y RL+ + F HG H+ +NM+SL G LEK G +FL+L + + S
Sbjct: 135 VAEGQYYRLLTAMFLHGGYAHIIFNMLSLWWLGAPLEKALGRARFLALYLVSGLAGSALS 194
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
LLA ++ S A G LF +L R LN +++ + A
Sbjct: 195 YLLA--------AANQPSLGASGAIFGLFGATAVLVRR--------LNYDMRPVIA---- 234
Query: 182 LIIIYLLV----PNASFKGHLSGILVGL 205
L++I L++ +++ H+ G++ G+
Sbjct: 235 LLVINLVLTFGWSGIAWEAHIGGLVAGV 262
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I Q ++ RL+ + F H +HL NM +L + GR LE G +FL+L + +
Sbjct: 134 IVQGEWYRLVTAMFLHYGVVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGFGGN--- 190
Query: 122 ILLAYIVFYITNDTSELSHCAI-GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A +F N T+ + AI G A L ++ + R + +L IN
Sbjct: 191 --VAAYLFSAENATTAGASTAIFGLFAALIVIERRMGR-DISSVLPVLVIN--------- 238
Query: 181 ELIIIYLLVPNASFKGHLSGILVG 204
++ L VP S GHL G++ G
Sbjct: 239 --LVFTLTVPGISIPGHLGGLVTG 260
>gi|55823724|ref|YP_142165.1| hypothetical protein str1836 [Streptococcus thermophilus CNRZ1066]
gi|55739709|gb|AAV63350.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 224
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI F H H +NM++L GR E+I+G +FL L + V + A+ +
Sbjct: 60 RLITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGN------AFTL 113
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
F+ N A G S LF + + L ++ +LN + A +I L
Sbjct: 114 FFTPNV------IAAGASTSLFGLFAAIVILGYYSHSPLLNQLGRNYLALIVINLIFNLF 167
Query: 189 VPNASFKGHLSGILVG 204
P+ GHL G++ G
Sbjct: 168 TPSVGITGHLGGLVGG 183
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 20/145 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I + + RL+ + F H +HL NM +L + GR LE G +F +L + L
Sbjct: 134 IAEGQWYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALYL----IAGLGG 189
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ--QILNINVKAIYAPW 179
+ AY+ + T+ S G A L ++ L R D Q IL IN
Sbjct: 190 NVAAYLFSAQNSATAGASTAVFGLFAALIIIERKLGR---DISQVIPILVIN-------- 238
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
++ L VP S GHL G++VG
Sbjct: 239 ---LVFTLTVPGISIPGHLGGLVVG 260
>gi|339441829|ref|YP_004707834.1| hypothetical protein CXIVA_07650 [Clostridium sp. SY8519]
gi|338901230|dbj|BAK46732.1| hypothetical protein CXIVA_07650 [Clostridium sp. SY8519]
Length = 218
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 26 IPPATLGLVFLQSMVYL------NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGD 79
+ P G+V L ++++L + + L + DAV ++ RL+ S+F H
Sbjct: 20 LTPVNTGIVLLNAVIFLILSVLGDTEDGAFMYLHGAMYPDAVFDSGEWYRLLTSSFLHFG 79
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
HL NMV L G LEK +G K+ + VF+SL
Sbjct: 80 ISHLVNNMVMLFCLGSYLEKAFGRIKYAVFYAAVCVFSSL 119
>gi|55821808|ref|YP_140250.1| hypothetical protein stu1836 [Streptococcus thermophilus LMG 18311]
gi|55737793|gb|AAV61435.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus thermophilus LMG 18311]
Length = 224
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI F H H +NM++L GR E+I+G +FL L + V + A+ +
Sbjct: 60 RLITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGN------AFTL 113
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
F+ N A G S LF + + L ++ +LN + A +I L
Sbjct: 114 FFTPNV------IAAGASTSLFGLFAAIVILGYYSHSPLLNQLGRNYLALIVINLIFNLF 167
Query: 189 VPNASFKGHLSGILVG 204
P+ GHL G++ G
Sbjct: 168 TPSVGITGHLGGLVGG 183
>gi|15839491|ref|NP_334528.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|148821302|ref|YP_001286056.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253797028|ref|YP_003030029.1| hypothetical protein TBMG_00111 [Mycobacterium tuberculosis KZN
1435]
gi|254233504|ref|ZP_04926830.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|289445640|ref|ZP_06435384.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289747877|ref|ZP_06507255.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308378549|ref|ZP_07482957.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394636|ref|ZP_07491694.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|375294312|ref|YP_005098579.1| hypothetical protein TBSG_00111 [Mycobacterium tuberculosis KZN
4207]
gi|392430521|ref|YP_006471565.1| hypothetical protein TBXG_000111 [Mycobacterium tuberculosis KZN
605]
gi|422815296|ref|ZP_16863514.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|13879598|gb|AAK44342.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|124603297|gb|EAY61572.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|148719829|gb|ABR04454.1| conserved integral membrane protein [Mycobacterium tuberculosis
F11]
gi|253318531|gb|ACT23134.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289418598|gb|EFD15799.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289688405|gb|EFD55893.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308197784|gb|ADO17908.1| rhomboid protease 1 [Mycobacterium tuberculosis H37Rv]
gi|308197788|gb|ADO17910.1| rhomboid protease 1 [Mycobacterium tuberculosis]
gi|308197792|gb|ADO17912.1| rhomboid protease 1 [Mycobacterium bovis BCG]
gi|308197796|gb|ADO17914.1| rhomboid protease 1 [Mycobacterium bovis]
gi|308352202|gb|EFP41053.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367674|gb|EFP56525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717250|gb|EGB26458.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|328456817|gb|AEB02240.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|392051930|gb|AFM47488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length = 284
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
AV + Y RL+ SAF H MHL NM +L + G LE G +F +L ++
Sbjct: 104 PAVASGQTY-RLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALY----AVSA 158
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L +L Y++ + T+ S G LF ++ R L+++V+ + A
Sbjct: 159 LGGSVLVYLIAPLNTATAGASGAVFG----LFGATFMVARR--------LHLDVRWVVA- 205
Query: 179 WFELIIIYL----LVPNASFKGHLSGI----LVGLTYTDTP 211
LI+I L L P S++GH+ G+ LV TY P
Sbjct: 206 ---LIVINLAFTFLAPAISWQGHVGGLVTGALVAATYVYAP 243
>gi|294786262|ref|ZP_06751516.1| rhomboid family protein [Parascardovia denticolens F0305]
gi|315225796|ref|ZP_07867584.1| rhomboid family membrane protein [Parascardovia denticolens DSM
10105 = JCM 12538]
gi|294485095|gb|EFG32729.1| rhomboid family protein [Parascardovia denticolens F0305]
gi|315119928|gb|EFT83060.1| rhomboid family membrane protein [Parascardovia denticolens DSM
10105 = JCM 12538]
Length = 266
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 75 FEHGDDM-HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
F H D+ H+++NMVSL L G LE++ G +FL+L + + S+ ++L A + +
Sbjct: 98 FMHSIDISHIFFNMVSLYLAGLSLERMLGHWEFLALYLVSGLGASVAFLLSA-----LAS 152
Query: 134 DTSELSHCAIGFSAVLFAM--KTILTRLQPDAYQQILNINVKAIYAPWFELIII--YLLV 189
S IG S +F + ++T L+ Q ++ V + LI++ L
Sbjct: 153 GPSSAVASMIGASGAIFGLFGAMVVTALKSPGRQNAWSMVV------FLGLILVVPMLFG 206
Query: 190 PNASFKGHLSGILVG 204
+++ HL G VG
Sbjct: 207 SGVAWQAHLGGFAVG 221
>gi|255326468|ref|ZP_05367550.1| rhomboid family protein [Rothia mucilaginosa ATCC 25296]
gi|255296508|gb|EET75843.1| rhomboid family protein [Rothia mucilaginosa ATCC 25296]
Length = 276
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 62 IQQRDYKRLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
+Q +Y R+I F H D MHL +NM++L + G LE++ G KFL + + VF +L
Sbjct: 114 VQHGEYYRIISYGFLHAQNDPMHLVWNMINLFIYGVSLERMMGRWKFLFVYLGSIVFGAL 173
>gi|262200065|ref|YP_003271273.1| rhomboid family protein [Gordonia bronchialis DSM 43247]
gi|262083412|gb|ACY19380.1| Rhomboid family protein [Gordonia bronchialis DSM 43247]
Length = 303
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
++ + +Y RL+ + F H MH+ NM+SL + GR LE+ G ++L++ + S
Sbjct: 116 KGIVGEGEYWRLLTAGFLHFSVMHVAVNMISLYIIGRDLERALGTYRYLAVYLI-----S 170
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L A ++F N + + AI ++ AM I+ + + A ++ I
Sbjct: 171 LLGGSAAVMLFEADNVQTAGASGAI--YGLIGAMLVIVLKARVPATPVLVIIGFN----- 223
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLTYT 208
+++ + +P S HL G+ G+ T
Sbjct: 224 ----VVLSVSLPGISLMAHLGGLAFGVAAT 249
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ SAF H HL +NM++L G LE G +F++L + + S+ LL
Sbjct: 108 RLLTSAFLHFGLTHLAFNMLALYFVGPPLEAALGRARFITLYLVSALGGSVLVYLLTL-- 165
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ L+ A G LF ++ R LN++V+++ A + L
Sbjct: 166 -------NALTAGASGAVFGLFGATFVVGR--------KLNMDVRSVMAIIVLNLAFTFL 210
Query: 189 VP-----NASFKGHLSGILVG 204
+P N S++GH+ G++ G
Sbjct: 211 IPLFTSQNISWQGHIGGLVTG 231
>gi|118485684|gb|ABK94692.1| unknown [Populus trichocarpa]
Length = 303
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+ + L++ G+ LE ++G +FL + + S+ + A ++YIT + L GF
Sbjct: 74 STLCLLIMGKLLEPVWGSKEFLKFIFIVNFLISICVFITAISLYYITRQENYLYMPISGF 133
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
+L + ++ PD +L I K WF +++ + + + F + L L
Sbjct: 134 QGILAGFLVGIKQIIPDQELSLLRIKAK-----WFPSLMLLIAIAISFFTAESAAYLPTL 188
Query: 206 TYTDTPIGW-GLDYVVDKCQEMINGEEQEDMG 236
+ T + W L Y K + + G+ +D
Sbjct: 189 IF-GTYMSWIYLRYFQRKPETKLRGDPSDDFA 219
>gi|71051311|gb|AAH98493.1| Rhbdd2 protein, partial [Mus musculus]
Length = 274
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 96 QLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC--AIGFSAVLFAM- 152
E+ G + + TVF+++ Y+ F + S+L A GF+ V FAM
Sbjct: 2 NFERTVGTVRHCFFTLIFTVFSAIIYL-----SFESVSSLSKLGEVEDARGFTPVAFAML 56
Query: 153 --KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
++ +R++ + + V ++ PW L+ L+P SF ++SG+L+GL+Y
Sbjct: 57 GVTSVRSRMR---RALVFGVVVPSVLVPWL-LLCASWLIPQTSFLSNVSGLLIGLSY 109
>gi|386712717|ref|YP_006179039.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384072272|emb|CCG43762.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 256
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 10/159 (6%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
L I + +I + +Y RL+ F H H +N SL+L G LE+I G KF+ + +
Sbjct: 44 LRFGIGVNVLILEGEYWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQILGKFKFIFMYL 103
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN 171
F + +L +I N + H +G S +F + + + I N
Sbjct: 104 FAGIVGNLGT--------FIVNPDAYYQH--LGASGAIFGIFGVYVFMVLFRKHLIDQAN 153
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDT 210
+ + + + + PN + GHL G++ G T
Sbjct: 154 SQIVMVIFILGLFMTFTRPNINVLGHLFGLIGGFAIAPT 192
>gi|356533975|ref|XP_003535533.1| PREDICTED: transmembrane protein 115-like [Glycine max]
Length = 325
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 7/152 (4%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+ + L+ G+ LE ++G +FL + + TSL + A ++ IT S L GF
Sbjct: 96 STIGLLFIGKLLEPVWGPREFLKFIFIVNFLTSLCIFITAIALYCITGQESYLYMPFSGF 155
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
V+F + ++ PD L I VK W I + + + + + L +
Sbjct: 156 HGVIFGFLVGIKQIVPDQELPFLKIKVK-----WLPSIALLCSIATSFWSLEAASYLPTV 210
Query: 206 TYTDTPIGW-GLDYVVDKCQEMINGEEQEDMG 236
Y T + W L Y K + + G+ ED
Sbjct: 211 IY-GTYMSWIYLRYWQRKPETKLKGDPSEDFA 241
>gi|194466614|ref|ZP_03072601.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
gi|194453650|gb|EDX42547.1| Rhomboid family protein [Lactobacillus reuteri 100-23]
Length = 219
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 26 IPPATLGLVFLQSMVYLNIFRKPWST-----LDVCISADAVIQQRDYKRLILSAFEHGDD 80
+ P TL L+ Q +VY + ST L + + ++I++ ++ RL+ F H
Sbjct: 8 LAPVTLILIVFQVLVYCWLVYAGGSTNTVILLKMGARSTSLIREGEWWRLVSPVFLHVGL 67
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH 140
HL N V+L+ GR +E+ +G + + + +F + LA VF ++ S
Sbjct: 68 SHLVVNSVTLLYIGRYIEEFFGHWRMVVIYFISAIFGN-----LASAVFMPLTISAGAST 122
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL----VPNASFKG 196
G + R NI V+ + + +II ++ +P G
Sbjct: 123 AIFGLFGAFLMLGVCFHR----------NIVVRVLSRTFLLFVIINIVMDFFLPGVDLVG 172
Query: 197 HLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGE 230
H+ G+ G + +G + VD+ + ++G
Sbjct: 173 HIGGLFGGF-FIAFIVGAPMLGTVDRLKRFLSGA 205
>gi|373859824|ref|ZP_09602547.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372450467|gb|EHP23955.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 244
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 53/200 (26%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I + +Y R I F H H+ +N SL+L G LEK+ G KF +L Y
Sbjct: 53 IAEGEYWRFITPIFLHSGFAHMLFNSFSLVLFGPALEKMLGKTKF-----------TLLY 101
Query: 122 I---LLAYIVFYITNDTSELSHCAIGFSAVLFAM-----------KTILTRLQPDAYQQI 167
+ LA + Y+ N LS+ +G S +FA+ K +L+R Q +
Sbjct: 102 LAGGTLANVATYLVNP---LSYSHVGSSGAIFALFGFYLAIILFKKHLLSR---QNSQIV 155
Query: 168 LNINVKAIYAPWFELIIIYLLVPNASFKGH----LSGILVG-LTYTDTPIGWGLDYVVDK 222
L I V +++ + PN + H +SG L+G + Y D + K
Sbjct: 156 LTITVIG--------LVMTFIQPNVNVAAHVFGLISGFLIGSIVYFDKNV---------K 198
Query: 223 CQEMINGEEQEDMGEEQKQN 242
+G+ Q KQN
Sbjct: 199 VTIPFSGKFQSTNIRSVKQN 218
>gi|300777685|ref|ZP_07087543.1| S54 family peptidase [Chryseobacterium gleum ATCC 35910]
gi|300503195|gb|EFK34335.1| S54 family peptidase [Chryseobacterium gleum ATCC 35910]
Length = 213
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSL 90
A+ +++Y RLI SAF H D MHL++NM+SL
Sbjct: 35 AIANRKEYVRLISSAFLHADFMHLFFNMLSL 65
>gi|254459891|ref|ZP_05073307.1| peptidase, S54 (rhomboid) family [Rhodobacterales bacterium
HTCC2083]
gi|206676480|gb|EDZ40967.1| peptidase, S54 (rhomboid) family [Rhodobacteraceae bacterium
HTCC2083]
Length = 255
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Query: 42 LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
LN+F W + + IS + +D+ L+ S F HG MH+ NM+ L + G +E
Sbjct: 49 LNVFYYDWGMVPLHIS-----RGQDFYTLVTSQFLHGGIMHIGGNMLFLWIFGDNMEDEM 103
Query: 102 GWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQP 161
G FL + VF +L ++ +T S +G +LF + L
Sbjct: 104 GHIGFLIFYLVSGVFAALAQWIVEPSSTIVTIGASGAIAGVMGGYLLLFPKAKVDILLIL 163
Query: 162 DAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG-----HLSGILVGL 205
+ +I I + WF L I +V + G H G +VGL
Sbjct: 164 IVFFRIFPIPAWVMLGVWFALQIGNGVVSDPDLGGVAYWAHAGGFMVGL 212
>gi|116331862|ref|YP_801580.1| intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116125551|gb|ABJ76822.1| Intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 197
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y LI S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RNKNYYTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPVKFL 80
>gi|260906986|ref|ZP_05915308.1| Rhomboid family protein [Brevibacterium linens BL2]
Length = 235
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 37/197 (18%)
Query: 11 LILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRL 70
+I++L ++ L A +P +L LV S V + +PW L V +
Sbjct: 26 IIMILTGVVFL-AQLLP--SLDLVHRLSFVPALVLEQPWRVLSVAL-------------- 68
Query: 71 ILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA--YIV 128
E HL NM+ L G +E+ G +FL++ + TV S+ ++LA + V
Sbjct: 69 ---VHEQPSPFHLLANMIGLFFFGSFIERALGRWRFLTIYLLGTVGGSVMVLVLAKPFTV 125
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY-L 187
++TN+ IG S +FA+ +L L P Q L+ N+ + + L Y
Sbjct: 126 DWVTNN--------IGASGAVFAIVGVL--LVPT---QKLDRNITGVVL-FVALNFGYGF 171
Query: 188 LVPNASFKGHLSGILVG 204
LV S++ HL G++ G
Sbjct: 172 LVAGVSWQAHLGGLIAG 188
>gi|399024170|ref|ZP_10726216.1| putative membrane protein [Chryseobacterium sp. CF314]
gi|398081044|gb|EJL71829.1| putative membrane protein [Chryseobacterium sp. CF314]
Length = 213
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSL 90
+ A+ +++Y RLI SAF H D MHL++NM+SL
Sbjct: 32 NVGAITGRKEYIRLISSAFLHADFMHLFFNMLSL 65
>gi|357112157|ref|XP_003557876.1| PREDICTED: transmembrane protein 115-like [Brachypodium distachyon]
Length = 320
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L+L G+ LE ++G + L + + + TS+ + A I++Y T L GF
Sbjct: 87 SIVGLLLFGKLLEPLWGAKELLKFIFIVNISTSMCVFVTAIILYYTTQQEIYLYTPLSGF 146
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
VL + ++ PD Q LNI V I A W ++ ++ V
Sbjct: 147 CGVLSGFLVGIKQILPD---QELNILVLKIKAKWIPSLVAFISV 187
>gi|302870601|ref|YP_003839238.1| rhomboid family protein [Micromonospora aurantiaca ATCC 27029]
gi|302573460|gb|ADL49662.1| Rhomboid family protein [Micromonospora aurantiaca ATCC 27029]
Length = 298
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++ RL+ + F H +HL NM +L + GR LE + G +FL+L + + ++
Sbjct: 129 VADGEWYRLVTAMFLHYGVLHLLLNMWALWVLGRTLEAVLGPLRFLALYLLAGLGGNVA- 187
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPD--AYQQILNINVKAIYAPW 179
AY+ T+ S G A +F I+ RL D A IL IN
Sbjct: 188 ---AYVFTEPNRFTAGASTAVFGLFAAVF---VIMRRLGRDTSAIVPILVIN-------- 233
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
+I VP+ S GHL G++ G
Sbjct: 234 ---LIFTFTVPSISVAGHLGGLVAG 255
>gi|270290405|ref|ZP_06196630.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
gi|270281186|gb|EFA27019.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
Length = 222
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWST-LDVCISADAVI-----QQRDYKRLILSAFEHGDD 80
P T+ LV L +VYL + ST L V ++ A++ + L S F H
Sbjct: 8 PFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAGWASLFTSMFVHIGF 67
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH 140
HL +NM++L GR LE++ G G+FL + + +F + + + F N S +
Sbjct: 68 EHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFAN-----VVSLAFAAPNSISAGAS 122
Query: 141 CAI 143
AI
Sbjct: 123 GAI 125
>gi|223478122|ref|YP_002582479.1| hypothetical protein [Thermococcus sp. AM4]
gi|214033348|gb|EEB74175.1| hypothetical protein TAM4_1542 [Thermococcus sp. AM4]
Length = 207
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q ++ RL + F H +HL N LI G QLE G ++L L I +F ++
Sbjct: 55 VTQYHEWWRLFTAMFVHLSWIHLAMNTFFLIYLGSQLELFVGRWRYLVLYITAGLFGNVL 114
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+ L D +S A S LF + L ++ IL N+++ A F
Sbjct: 115 SVALM--------DPYTISGGA---SGALFGIAGALIMIEG-----ILKKNIQSALANAF 158
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEE 231
L +I +P+ + HL G++VG+ +G +YV ++ M+ EE
Sbjct: 159 FLFLINSWMPHVNAIAHLGGLIVGIALGYI---YG-NYVKERMARMLYWEE 205
>gi|403251941|ref|ZP_10918256.1| putative membrane protein [actinobacterium SCGC AAA027-L06]
gi|402914686|gb|EJX35694.1| putative membrane protein [actinobacterium SCGC AAA027-L06]
Length = 178
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I + RL+ A HG +HL +NM++L G +E +G K++ +++ VF SL
Sbjct: 37 INNGQWYRLLTVALVHGGWLHLLFNMLALYSLGFTIENYFGKNKYIFILLTSLVFGSLTS 96
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL----TRLQPDAYQQILNINVKAIYA 177
L + L+ A+G S ++F + L R+ + + + I +
Sbjct: 97 YLF-----------NPLTSFAVGSSGMIFGLFGCLLVIGKRMGANLREGLGLIGLN---- 141
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
++I ++P +K HL G++ G+ T
Sbjct: 142 -----LVIPFVIPGIDWKAHLGGLVGGVLAT 167
>gi|83814935|ref|YP_444663.1| integral membrane protein [Salinibacter ruber DSM 13855]
gi|83756329|gb|ABC44442.1| putative integral membrane protein [Salinibacter ruber DSM 13855]
Length = 230
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P TL L+ V L F P ++ + R+ R + + F H HL +NM
Sbjct: 25 PITLALLLSNLGVSLYAFTDPSLLRELSFRPHRIRTHREGYRFLTAGFVHASGTHLAFNM 84
Query: 88 VSLILKGRQLEKIYGWGKFLSL 109
++ G LE I G G FL L
Sbjct: 85 ITFYFFGPLLEGILGIGAFLLL 106
>gi|315506838|ref|YP_004085725.1| rhomboid family protein [Micromonospora sp. L5]
gi|315413457|gb|ADU11574.1| Rhomboid family protein [Micromonospora sp. L5]
Length = 298
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++ RL+ + F H +HL NM +L + GR LE + G +FL+L + + ++
Sbjct: 129 VADGEWYRLVTAMFLHYGVLHLLLNMWALWVLGRTLEAVLGPLRFLALYLLAGLGGNVA- 187
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPD--AYQQILNINVKAIYAPW 179
AY+ T+ S G A +F I+ RL D A IL IN
Sbjct: 188 ---AYVFTEPNRFTAGASTAVFGLFAAVF---VIMRRLGRDTSAIVPILVIN-------- 233
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
+I VP+ S GHL G++ G
Sbjct: 234 ---LIFTFTVPSISVAGHLGGLVAG 255
>gi|269793370|ref|YP_003312825.1| hypothetical protein Sked_00140 [Sanguibacter keddieii DSM 10542]
gi|269095555|gb|ACZ19991.1| uncharacterized membrane protein [Sanguibacter keddieii DSM 10542]
Length = 286
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 24/143 (16%)
Query: 69 RLILSAFEHGDDM-HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
R + +AF H H+ NM +L + G LE + G +F +L + + + +LLA
Sbjct: 120 RFVTAAFVHSTSFFHIALNMYALWIVGPYLENLLGRVRFTALYLLSAIGGQVAVVLLA-- 177
Query: 128 VFYITNDTSELS--HCAIGFSAVLF----AMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
D S S +G S +F A+ ++ ++ +A ++ I +
Sbjct: 178 ------DPSGASWFTGTVGASGAVFGLFGAIFVVMRKMGQEARGMLVIIGLN-------- 223
Query: 182 LIIIYLLVPNASFKGHLSGILVG 204
+++ +VPN S++GHL G++ G
Sbjct: 224 -LVVGFVVPNISWQGHLGGLVTG 245
>gi|359765361|ref|ZP_09269192.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
gi|359317295|dbj|GAB22025.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
Length = 264
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
Y RL+ + F H +HL NM+SL + GR LE G G+F +++++T +L
Sbjct: 83 QYWRLLTAGFLHYSLIHLAVNMISLYILGRDLEIALGIGRF--VMVYMTA------LLGG 134
Query: 126 YIVFYITNDTSELSHCAIG-FSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPWFEL 182
I S A G ++ AM ++ RL+ P I+ IN
Sbjct: 135 SAAVMIAQSNEARSAGASGAIYGLMGAMLIVVLRLRVSPAPVLTIIAIN----------- 183
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYT 208
+++ +P S H+ G++ G T
Sbjct: 184 LVMSFSIPGISLAAHVGGLVFGAAAT 209
>gi|418027820|ref|ZP_12666426.1| Serine endopeptidase [Streptococcus thermophilus CNCM I-1630]
gi|354689564|gb|EHE89549.1| Serine endopeptidase [Streptococcus thermophilus CNCM I-1630]
Length = 179
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI F H H +NM++L GR E+I+G +FL L + V + A+ +
Sbjct: 15 RLITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGN------AFTL 68
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
F+ N A G S LF + + L ++ +LN + A +I L
Sbjct: 69 FFTPNV------IAAGASTSLFGLFAAIVILGYYSHSPLLNQLGRNYLALIVINLIFNLF 122
Query: 189 VPNASFKGHLSGILVG 204
P+ GHL G++ G
Sbjct: 123 TPSVGITGHLGGLVGG 138
>gi|304384713|ref|ZP_07367059.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|418068986|ref|ZP_12706266.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
gi|304328907|gb|EFL96127.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|357537719|gb|EHJ21742.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
Length = 229
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWST-LDVCISADAVI-----QQRDYKRLILSAFEHGDD 80
P T+ LV L +VYL + ST L V ++ A++ + L S F H
Sbjct: 15 PFMTITLVALNVLVYLWLTLAGGSTDLTVLVTHGAMVPAMIKDGAGWASLFTSMFVHIGF 74
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH 140
HL +NM++L GR LE++ G G+FL + + +F + + + F N S +
Sbjct: 75 EHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFAN-----VVSLAFAAPNSISAGAS 129
Query: 141 CAI 143
AI
Sbjct: 130 GAI 132
>gi|224097969|ref|XP_002311100.1| predicted protein [Populus trichocarpa]
gi|222850920|gb|EEE88467.1| predicted protein [Populus trichocarpa]
Length = 275
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+ + L++ G+ LE ++G +FL + + S+ + A ++YIT + L GF
Sbjct: 74 STLCLLIMGKLLEPVWGSKEFLKFIFIVNFLISICVFITAISLYYITRQENYLYMPISGF 133
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
+L + ++ PD +L I K WF +++ + + + F + L L
Sbjct: 134 QGILAGFLVGIKQIIPDQELSLLRIKAK-----WFPSLMLLIAIAISFFTAESAAYLPTL 188
Query: 206 TYTDTPIGW-GLDYVVDKCQEMINGEEQEDMG 236
+ T + W L Y K + + G+ +D
Sbjct: 189 IF-GTYMSWIYLRYFQRKPETKLRGDPSDDFA 219
>gi|424841080|ref|ZP_18265705.1| putative membrane protein [Saprospira grandis DSM 2844]
gi|395319278|gb|EJF52199.1| putative membrane protein [Saprospira grandis DSM 2844]
Length = 223
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYN 86
P L ++ + +V L F+K + + ++ ++++ R S H D MHL N
Sbjct: 14 APVNLAILVITVIVSLQAFQKREIYAQLIFNPAVIVNRKEWYRFFSSGLIHADGMHLGLN 73
Query: 87 MVSLILKGRQLEKIYG------WGKFLSLVIFLTVFTS 118
M L G Q+E+++ WG L L+++++ +
Sbjct: 74 MFVLYQFGGQVEQVFTLVFGNIWGHILYLLLYVSALAA 111
>gi|418738312|ref|ZP_13294708.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410746486|gb|EKQ99393.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 197
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y LI S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RNKNYYTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFL 80
>gi|421876784|ref|ZP_16308338.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
gi|372557462|emb|CCF24458.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
Length = 229
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+ + Y RL+ F H MH+ NM++L G E+ +G +FL L F + +++
Sbjct: 54 IAHNQAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAERAFGSWRFLMLYAFGGIVGNIF 113
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
LL+ + ++G S+ LFAM L L Y+ N ++A A +
Sbjct: 114 SYLLSPLA------------ISVGASSALFAMFAGLI-LYGVRYRD--NPTIRAQGATFL 158
Query: 181 ELIIIY----LLVPNASFKGHLSGILVGLTYT 208
+++ LL P GH+ G++ G+ T
Sbjct: 159 LFVVLNLFSGLLAPTIDLWGHIGGLIGGMMST 190
>gi|163846340|ref|YP_001634384.1| rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222524105|ref|YP_002568576.1| rhomboid family protein [Chloroflexus sp. Y-400-fl]
gi|163667629|gb|ABY33995.1| Rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222447984|gb|ACM52250.1| Rhomboid family protein [Chloroflexus sp. Y-400-fl]
Length = 271
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 30 TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQR----DYKRLILSAFEHGDDMHLYY 85
+G+V++ S V F +P V A I +R + RL+ + F H + +H+++
Sbjct: 53 AIGIVYVLSCVLSGSFFQP--AFPVLAVLGAKINERIADGELWRLLTAVFLHANLIHIFF 110
Query: 86 NMVSLILKGRQLEKIYGWGKFLSL 109
N +L + G + E+ YG G+FL+L
Sbjct: 111 NGYALSVLGPETERFYGHGRFLAL 134
>gi|357417155|ref|YP_004930175.1| hypothetical protein DSC_07415 [Pseudoxanthomonas spadix BD-a59]
gi|355334733|gb|AER56134.1| hypothetical protein DSC_07415 [Pseudoxanthomonas spadix BD-a59]
Length = 201
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLE 98
A+ + Y RL+ F H D MHL++NM++L GR +E
Sbjct: 33 AIARNHQYDRLLTHGFIHADFMHLFFNMLTLFFFGRPIE 71
>gi|449452106|ref|XP_004143801.1| PREDICTED: transmembrane protein 115-like [Cucumis sativus]
gi|449529888|ref|XP_004171930.1| PREDICTED: transmembrane protein 115-like [Cucumis sativus]
Length = 308
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+ V L+ G+ LE I+G +FL + + TSL + A ++YIT + S L GF
Sbjct: 74 STVGLLFVGKLLEPIWGSREFLKFIFVVNFLTSLCVFITAIALYYITQEESYLYLPVSGF 133
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVK 173
+L + ++ PD +L + K
Sbjct: 134 YGILAGFLVGIKQMIPDQELPVLKLKAK 161
>gi|418718375|ref|ZP_13277909.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|421092732|ref|ZP_15553464.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410364583|gb|EKP15604.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410744855|gb|EKQ93590.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|456889841|gb|EMG00711.1| peptidase, S54 family [Leptospira borgpetersenii str. 200701203]
Length = 197
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y LI S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RNKNYYTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFL 80
>gi|170017498|ref|YP_001728417.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|414597489|ref|ZP_11447055.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
gi|169804355|gb|ACA82973.1| Small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|390481770|emb|CCF29116.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
Length = 229
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+ + Y RL+ F H MH+ NM++L G E+ +G +FL L F + +++
Sbjct: 54 IAHNQAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAERAFGSWRFLMLYAFGGIVGNIF 113
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
LL+ + ++G S+ LFAM L L Y+ N ++A A +
Sbjct: 114 SYLLSPLA------------ISVGASSALFAMFAGLI-LYGVRYRD--NPTIRAQGATFL 158
Query: 181 ELIIIY----LLVPNASFKGHLSGILVGLTYT 208
+++ LL P GH+ G++ G+ T
Sbjct: 159 LFVVLNLFSGLLAPTIDLWGHIGGLIGGMMST 190
>gi|338730738|ref|YP_004660130.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
gi|335365089|gb|AEH51034.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
Length = 230
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 25/154 (16%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++ ++ R+I + F HG +HL +N +L G +E IYG KF+ ++
Sbjct: 47 LVSGGEWYRVITAMFVHGGLLHLLFNSYALFYFGTIVESIYGTEKFV-----------IF 95
Query: 121 YIL------LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKA 174
Y+L LA VFY + + S G +LFA+ R P +Q + +
Sbjct: 96 YLLAGAVGNLATHVFYYRSISVGASGAIFGLVGILFALG--FRRDTPIFMRQFTGMAL-- 151
Query: 175 IYAPWFELIIIYLLVPNASFK--GHLSGILVGLT 206
P ++Y +P ++ HL G L G+
Sbjct: 152 --LPMIIFNVVYGFMPGSNINNAAHLGGFLAGMA 183
>gi|328876128|gb|EGG24491.1| transmembrane protein [Dictyostelium fasciculatum]
Length = 254
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 94 GRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY--ITNDTSELSHC-AIGFSAVLF 150
G+Q E I+G +F+ + + +F+ L + Y +FY IT +S L + GFS V+
Sbjct: 93 GKQFEPIWGSTEFMKFISIVNIFSGL--CVFLYFIFYYSITGQSSVLYEANSCGFSGVIA 150
Query: 151 AMKTILTRLQPDAYQQI-LNINVKAIYAPWFELII--IYLLVPNASFKGH--LSGILVGL 205
+L +L P+ I +N++A + P ++I +++++ S H + G +V
Sbjct: 151 GFTVVLKQLFPEQIIPIFFGVNIRAKHLPSIYVLITLVFMVIGLYSRSSHFVIFGTIVSW 210
Query: 206 TYTDTPIGWGLDYVVDKCQEMINGEEQEDM 235
Y L + K +E + G+ E
Sbjct: 211 IY--------LRFYQRKGRENVRGDRNESF 232
>gi|428186510|gb|EKX55360.1| hypothetical protein GUITHDRAFT_52711, partial [Guillardia theta
CCMP2712]
Length = 157
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
+ IS AV Q+ + +I S F H D +HL NM L G + +I G KFL+L +
Sbjct: 24 NFAISTAAVTQEGRFHTIITSFFSHYDWVHLGANMCCLWFFGAETLRILGGRKFLALYVG 83
Query: 113 LTVFTSLYYIL 123
+ +S++ +L
Sbjct: 84 GGLVSSIFQVL 94
>gi|297626390|ref|YP_003688153.1| hypothetical protein PFREUD_12010 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922155|emb|CBL56723.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 205
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 64 QRDYKRLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
Q RLI SAF H MH+ NM+ L L GR +E G ++ + + S +
Sbjct: 36 QSQPWRLITSAFAHSVSGFMHIAGNMLMLWLLGRAIEPAIGRRDYVLSYLLSALGGSALF 95
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
IL A + S +G SA +F + +L L ++ I I+
Sbjct: 96 ILFAAL--------SGTHSAVVGASAAVFGLFGLLVGLY-----KLAGIRNTGIWVLLGI 142
Query: 182 LIIIYLLVPNASFKGHLSGILVGL 205
++ +VP +++GHL G L+GL
Sbjct: 143 NLVFDFVVPGIAWQGHLGGFLIGL 166
>gi|327401074|ref|YP_004341913.1| peptidase S54, rhomboid domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316582|gb|AEA47198.1| Peptidase S54, rhomboid domain protein [Archaeoglobus veneficus
SNP6]
Length = 262
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+++ F HG H NM+ L+ G +LE+ G +L + + +L Y+L AY
Sbjct: 113 QIVTCIFLHGSFDHYLVNMIVLLFFGSELERRAGGNNYLKIFFLSGIAGNLAYLLFAY-- 170
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDA---YQQILNINVKA---IYAPWFEL 182
T EL + A+G S ++ + L + P+ + ++ + ++ ++A +
Sbjct: 171 -----STGEL-YPALGASGAIYGIMGTLAIIAPEIRVLFFFMIPMGIRTALLLFAAYDLF 224
Query: 183 IIIYLLVPNASFKGHLSGILVGLTY 207
++ + + HL+G+LVGL Y
Sbjct: 225 MLPFSAQTGVAHAAHLAGLLVGLYY 249
>gi|323135989|ref|ZP_08071072.1| Rhomboid family protein [Methylocystis sp. ATCC 49242]
gi|322399080|gb|EFY01599.1| Rhomboid family protein [Methylocystis sp. ATCC 49242]
Length = 537
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V+QQ + RL+ SAF H MH NM+ L L GR +E G + L+L + +F+S +
Sbjct: 384 VLQQGEDWRLLTSAFLHFGGMHFALNMLMLALIGRDVEHEIGAIRTLALYLGGALFSSAF 443
Query: 121 YI-LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ-PDAYQQILNINVKAIYAP 178
+ L+A+ S +G S +FA+ ++ L+ D + +++ A
Sbjct: 444 VLGLMAF--------GSVAYGLYVGASGAIFALFGVVGALRVRDWLRHRASLDTFRTAAL 495
Query: 179 WFELII---IYLLVPNASFKGHLSGILVGL 205
+++ L+P +S HLSG GL
Sbjct: 496 ALAILVQIGADFLLPMSSLAAHLSGFGFGL 525
>gi|354477575|ref|XP_003500995.1| PREDICTED: rhomboid domain-containing protein 2-like [Cricetulus
griseus]
Length = 306
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ F + + + L + + E+ G + + T+F+++ Y+
Sbjct: 7 RLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGTVRHCFFTLIFTIFSAIIYL-----S 61
Query: 129 FYITNDTSELSHC--AIGFSAVLFAM---KTILTRLQPDAYQQILNINVKAIYAPWFELI 183
F + S+L A GF+ V FAM ++ +R++ + + V ++ PW L+
Sbjct: 62 FESVSSLSKLGEVEDARGFTPVAFAMLGVTSVRSRMR---RALVFGVVVPSVLVPWL-LL 117
Query: 184 IIYLLVPNASFKGHLSGILVGLTY 207
L+P SF ++SG+L+GL+Y
Sbjct: 118 CASWLIPQTSFLSNVSGLLIGLSY 141
>gi|374815406|ref|ZP_09719143.1| rhomboid family protein [Treponema primitia ZAS-1]
Length = 207
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+IQ+ Y + + F HG H+ +NM++L + G Q+E+ G +F LV +L+ T +
Sbjct: 46 LIQRGFYWQFVTYMFAHGGISHILFNMLALFIFGAQVERRMGSKEF--LVYYLS--TGIL 101
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDA 163
L++++++ T +G S LFA++ PD+
Sbjct: 102 AGFLSFVIYWFTGSYGVF---LLGASGALFAVQLAYATFFPDS 141
>gi|288916640|ref|ZP_06411015.1| Rhomboid family protein [Frankia sp. EUN1f]
gi|288351895|gb|EFC86097.1| Rhomboid family protein [Frankia sp. EUN1f]
Length = 208
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 51 TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLV 110
+LD +S + Y R + +AF HG+ +H+ N+ +L + G QLE + G + + L
Sbjct: 27 SLDFLLSGVDIAFYDQYYRFVAAAFLHGNFLHILVNLYALFIMGHQLEAVVGRLRLIGLF 86
Query: 111 IFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ 165
+ V + +L+Y+V + + S GF A I R++ D Q
Sbjct: 87 LAGAVGGN----VLSYVVNGLETSSLGASTAIFGFFG---AFYVIARRMRADTTQ 134
>gi|189910395|ref|YP_001961950.1| rhomboid family protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775071|gb|ABZ93372.1| Rhomboid family protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
Length = 317
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDT---SE 137
+HL++NM + + G + I G KF L V ++ +L AY+ +
Sbjct: 74 LHLFFNMYGMYMLGNHIIPIIGKTKFTILYFVSQVGAGIFVVLSAYLNVVLGGQVPLLES 133
Query: 138 LSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL--VPNASFK 195
++ IG S +F + + P+A + I VKA A W L+I +L+ N S
Sbjct: 134 MTSQTIGASGAIFGLLALFGIFYPNAELLLFIIPVKAKNAVWAALLIGFLISQFGNGSIS 193
Query: 196 G--HLSGILVGL 205
HL G L L
Sbjct: 194 STCHLGGALTAL 205
>gi|323490567|ref|ZP_08095773.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
gi|323395833|gb|EGA88673.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
Length = 202
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
+ ++ I + + R F H MHL +NM SL L G +LE++ G +F ++ +
Sbjct: 46 VGSNFYIAEGQWWRFFTPMFLHNGVMHLLFNMFSLFLFGPELERLTGKVRFTTIYLLAGF 105
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
F S L + ++ + + F A+++ L +L+ I+ V
Sbjct: 106 FASAATYFLQPLDYFHVGASGAIFGVFGAFGALVYYGGRALPQLKQIILPIIVISIVMT- 164
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGI----LVGLTY 207
L PN + H++G+ L+GL+Y
Sbjct: 165 -----------FLTPNVNVTAHIAGMITGFLIGLSY 189
>gi|168004597|ref|XP_001754998.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694102|gb|EDQ80452.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 313
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V+L+L G+ LE +G +F+ + F+ +FT +LA +++I+ + L GF
Sbjct: 77 SIVALLLAGKHLEPFWGSKEFVKFIAFVNLFTCASTFVLAIFLYFISRQGNYLYAPISGF 136
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
V+ + ++ P+ Q+I + ++ ++P
Sbjct: 137 HGVVAGFLVAVKQIIPE--QEIPALKLRVKWSP 167
>gi|429753713|ref|ZP_19286492.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429171918|gb|EKY13506.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 265
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%)
Query: 37 QSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQ 96
Q +VY IF + +C+ + L+ AF H HL++NM L G
Sbjct: 26 QGLVYGGIFSQSQLNQWLCVPQQLPLFLERPWTLLSYAFYHVSIEHLFWNMFFLFFSGHV 85
Query: 97 LEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL 156
+++ F+S+ F + + ++L YI I N+ + L G SA + + +
Sbjct: 86 FFRLFKTKTFISVYFFSLIGGGIAFLLWGYITPEIANNNALL-----GASAAVIGLLFFV 140
Query: 157 TRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPN------ASFKGHLSGILVGLTY 207
+ P + + ++ ++ ++ + + N A F G LSGILVG +Y
Sbjct: 141 VTIFPSYKIYVFSFRIRLLFFLLALILFDCIDISNNFGGKIAHFGGILSGILVGFSY 197
>gi|403669619|ref|ZP_10934810.1| hypothetical protein KJC8E_12316 [Kurthia sp. JC8E]
Length = 206
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 26/149 (17%)
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF 116
+ + +I Q +Y R++ + F HG MH+ NM L + G +LE+I G +F ++ + +
Sbjct: 47 AINFLIAQGEYWRVVTAIFIHGGFMHVLSNMFWLYVFGPELERIAGKARFFTIYMLAGIL 106
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLF-------AMKTILTRLQPDAYQQILN 169
+++ T L++ ++G S +F A+ ++ P Q I+
Sbjct: 107 GNVF-----------TYIWQPLNYASVGASGAIFGILGAFLALVYYTRKIFPQLKQMIVP 155
Query: 170 INVKAIYAPWFELIIIYLLVPNASFKGHL 198
+ V + +II L PN + H+
Sbjct: 156 LVVIS--------VIITFLQPNVNVIAHI 176
>gi|260940587|ref|XP_002614593.1| hypothetical protein CLUG_05371 [Clavispora lusitaniae ATCC 42720]
gi|238851779|gb|EEQ41243.1| hypothetical protein CLUG_05371 [Clavispora lusitaniae ATCC 42720]
Length = 380
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 37/164 (22%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
L+ SAF H + MHL +NM+ L G L G FL++ + V +S + L +
Sbjct: 226 LLGSAFSHQEGMHLLFNMLMLYSFGSTLCGYVGASNFLTMYLNSAVLSSFVSLALPIVT- 284
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPD----------------AYQQILNINVK 173
S +S ++G S +F++ + L P A+ + NV
Sbjct: 285 -----RSSMSIASLGASGAIFSVFGAFSYLFPRSAIAFFFLPIPGGAWFAFLGTMAFNVA 339
Query: 174 AIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLD 217
++ W + HL G L G+ Y GW D
Sbjct: 340 GLFMKWGRY----------DYAAHLGGCLAGIGY-----GWWFD 368
>gi|312132101|ref|YP_003999441.1| rhomboid family protein [Leadbetterella byssophila DSM 17132]
gi|311908647|gb|ADQ19088.1| Rhomboid family protein [Leadbetterella byssophila DSM 17132]
Length = 205
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 45 FRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
F P + + AV ++++Y RL+ S F H D +HL NM L + G +E I+G
Sbjct: 17 FSNPSFLYKLLDNPYAVSRRKEYYRLLTSGFVHADYLHLLLNMYVLYMFGSNMETIFG 74
>gi|444429847|ref|ZP_21225028.1| rhomboid family protein [Gordonia soli NBRC 108243]
gi|443889267|dbj|GAC66749.1| rhomboid family protein [Gordonia soli NBRC 108243]
Length = 268
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I Y RL S F H +H+ NM++L + GR LE G +++++ + ++F +
Sbjct: 83 IADGQYWRLFTSGFLHLSVIHIAGNMLALYILGRDLELALGIPRYVAVYV-TSLFGGSAF 141
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL--TRLQPDAYQQILNINVKAIYAPW 179
++L +DT+ + + ++ A+ +L RL P I+ +N
Sbjct: 142 VML------FESDTAVTAGASGAIYGLMGAILVVLLKARLSPVPVLSIIGLN-------- 187
Query: 180 FELIIIYLLVPNASFKGHLSGILVGLTYT 208
I++ + +P S H+ G++ G T
Sbjct: 188 ---IVLSIAIPGISIWAHIGGLVFGAVAT 213
>gi|357639493|ref|ZP_09137366.1| peptidase, S54 family [Streptococcus urinalis 2285-97]
gi|418417068|ref|ZP_12990266.1| hypothetical protein HMPREF9318_01014 [Streptococcus urinalis
FB127-CNA-2]
gi|357587947|gb|EHJ57355.1| peptidase, S54 family [Streptococcus urinalis 2285-97]
gi|410873124|gb|EKS21060.1| hypothetical protein HMPREF9318_01014 [Streptococcus urinalis
FB127-CNA-2]
Length = 222
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ F H H + N+++L G+ E I+G FL L I + +++ +L V
Sbjct: 59 RLVTPIFVHIGLGHFFLNILALYFVGQMAEGIWGSPYFLLLYILAGISGNVFTLLFTPDV 118
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
TS LFA ++ PDA ++K + +F LI+I L+
Sbjct: 119 IAAGASTSLFG---------LFAAIMMVAVFSPDA-------SLKGLGRDYFMLILINLV 162
Query: 189 ----VPNASFKGHLSGILVGL 205
+PN S GH+ G++ G+
Sbjct: 163 MNIFMPNVSIAGHIGGLVGGI 183
>gi|227432339|ref|ZP_03914331.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|381336263|ref|YP_005174038.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|227351860|gb|EEJ42094.1| S54 family peptidase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|356644229|gb|AET30072.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 227
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
+ +Y RL+ F H +H+ NM++L G +E+ +G KF L F + +++ L
Sbjct: 56 KHEYWRLLTPVFLHAGFLHIVTNMITLWFIGPLVERAFGSAKFFGLYFFGGIIGNIFSYL 115
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAM 152
LA S ++G S LFAM
Sbjct: 116 LAP------------SSVSVGASTALFAM 132
>gi|171184682|ref|YP_001793601.1| rhomboid family protein [Pyrobaculum neutrophilum V24Sta]
gi|170933894|gb|ACB39155.1| Rhomboid family protein [Pyrobaculum neutrophilum V24Sta]
Length = 232
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
T P T LVF+ V++ +P +D A+ + Y R + F HG +H+
Sbjct: 12 STFPLVTKALVFVNIAVFIYELMRP-EVVDQYAFVPALAWEEPY-RWVTHMFLHGGLLHI 69
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSL 109
NM+ L + G +E YG G+FL+L
Sbjct: 70 VGNMIYLWVFGDNVEDHYGHGRFLAL 95
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 46 RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGK 105
+ P+ + + +I Y RL+ S F H HL +N+ +LI+ G+ E+++G G+
Sbjct: 40 QNPYVLIFFGAKMNTLIDAGQYWRLLTSMFIHIGFTHLLFNVYALIVLGKLAERLFGHGR 99
Query: 106 FLSLVIFLTVFTSL 119
FL + +F + SL
Sbjct: 100 FLLIYLFSGLAGSL 113
>gi|422759921|ref|ZP_16813683.1| hypothetical protein SDD27957_10405 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|322412756|gb|EFY03664.1| hypothetical protein SDD27957_10405 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 224
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 16/145 (11%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ F H H + N ++L G+ E+I+G +FL L +F + + + +
Sbjct: 59 RLVTPIFVHIGWGHFFVNALTLYFVGQMAEEIWGSHRFLLLYVFSGIMGNAFTM------ 112
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
++T +T A G S LF + + L Q L KA +++ L+
Sbjct: 113 -WLTPET-----VAAGGSTSLFGLFAAIMVLGAFGNNQALRELGKAYQTLIIVNLVLNLV 166
Query: 189 VPNASFKGHLSGI----LVGLTYTD 209
+PN S GH+ GI L+GL +++
Sbjct: 167 MPNVSMAGHVGGIVGGALLGLGFSN 191
>gi|326335850|ref|ZP_08202029.1| S54 family peptidase [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691994|gb|EGD33954.1| S54 family peptidase [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 209
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFL--TVFT 117
+Q+ DY RLI S F H + HL +NM+SL + I+G G F+ L+I+L VF
Sbjct: 36 GAVQRGDYLRLISSGFLHANWEHLIFNMISLYFFHGII--IHGMGSFIFLLIYLGSIVFG 93
Query: 118 SLYYILLAYIVFYITNDTSELSHCAI--GFSAVLFAMKTILTRLQPD 162
+L+ + YI S S G S ++FA + LQ +
Sbjct: 94 NLFSL-------YIYRHQSYYSAIGASGGVSGIIFAAIALFPYLQVN 133
>gi|389818133|ref|ZP_10208574.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
gi|388464065|gb|EIM06401.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
Length = 202
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
+ ++ I + + R F HG MHL +NM SL L G +LE++ G +F ++ + +
Sbjct: 46 VGSNFYIAEGQWWRFFTPIFLHGGLMHLLFNMFSLFLFGPELERLTGKVRFTTIYLSAGL 105
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
F S T L + +G S +F + L + + + + I
Sbjct: 106 FASA-----------ATYFLQPLDYAHVGASGAIFGVFGAFGALVYYGGRALPQLK-QII 153
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGI----LVGLTY 207
I++ L PN + H++G+ L+GL+Y
Sbjct: 154 LPIIVISIVMTFLTPNVNVTAHIAGMITGFLIGLSY 189
>gi|388513695|gb|AFK44909.1| unknown [Medicago truncatula]
Length = 317
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 17/157 (10%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L+L G+ LE ++G +F+ + + + TSL + A ++YIT L GF
Sbjct: 83 SIVCLLLIGKLLEPVWGPREFIKFIFIVNILTSLCIFITAIALYYITRQEIYLYTPLSGF 142
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
V+ + ++ PD Q++ +N+K + P L+ L SF I+
Sbjct: 143 HGVISGFLVSIKQIIPD--QELPFVNIKMKWLPSIALLCSIAL----SF-----WIIEAT 191
Query: 206 TYTDTPI-----GW-GLDYVVDKCQEMINGEEQEDMG 236
TY T I W L Y K + + G+ ED
Sbjct: 192 TYLPTVIFGTYMSWIHLRYWQKKPETKLKGDPSEDFA 228
>gi|226507044|ref|NP_001140408.1| hypothetical protein [Zea mays]
gi|194699368|gb|ACF83768.1| unknown [Zea mays]
gi|413955675|gb|AFW88324.1| hypothetical protein ZEAMMB73_179598 [Zea mays]
Length = 324
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L+L G+ LE ++G + L + + + S + +++YIT + S L GF
Sbjct: 77 SIVGLLLFGKVLEPLWGAKELLKFIFIVNLSISACVFVTMIVLYYITQEESYLYTPVSGF 136
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
VL + + ++ PD Q LN+ V I A W I+ ++ V + F
Sbjct: 137 YGVLSGLLVGIKQILPD---QELNLFVFKISAKWIPSIVAFISVAVSFF 182
>gi|283782497|ref|YP_003373252.1| rhomboid family protein [Pirellula staleyi DSM 6068]
gi|283440950|gb|ADB19392.1| Rhomboid family protein [Pirellula staleyi DSM 6068]
Length = 290
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 21/185 (11%)
Query: 54 VCISADAVIQQRDYKRLILSAFEH-GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
+ ++A + + ++ + + + F H H+ NM+ L G +E G +FL +
Sbjct: 54 LSVNATSFLHPLEWWKFLTAGFVHSARPSHIIGNMIGLYFFGTAIEGRSGRWEFLRFYLL 113
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAV------LFAMKTILTRL---QPDA 163
VF+S+++ + Y Y N S + G +AV L+ TIL + P
Sbjct: 114 AIVFSSIFWCVTEY---YFGNPLSTARGASGGVTAVVILYCLLYPRSTILLMMFIPMPAW 170
Query: 164 YQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
IL I +++ + N +F H+ G L L Y I G + V+K
Sbjct: 171 LAGILIIGG--------DVLQLQNQGANIAFTAHIGGALFALAYWSLGINLGRFWPVEKA 222
Query: 224 QEMIN 228
+E+++
Sbjct: 223 RELLS 227
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ SAF H H+ +NM++L G LE G +F++L + + S+ LL +
Sbjct: 118 RLVTSAFLHFSVTHIAFNMLALYFVGPPLEHALGRLRFVALYLLSALGGSVLVYLLTF-- 175
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP-----WFELI 183
+ L+ A G LF ++ R LN++V+++ A F +
Sbjct: 176 -------NALTAGASGAVFGLFGATFVVGR--------KLNMDVRSVLAIIGLNLAFTFL 220
Query: 184 IIYLLVPNASFKGHLSGILVG 204
I N S++GH+ G++ G
Sbjct: 221 IPLFTSQNISWQGHIGGLVTG 241
>gi|183220277|ref|YP_001838273.1| putative rhomboid-like protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|167778699|gb|ABZ96997.1| Putative rhomboid-like protein; putative membrane protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 307
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDT---SE 137
+HL++NM + + G + I G KF L V ++ +L AY+ +
Sbjct: 64 LHLFFNMYGMYMLGNHIIPIIGKTKFTILYFVSQVGAGIFVVLSAYLNVVLGGQVPLLES 123
Query: 138 LSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL--VPNASFK 195
++ IG S +F + + P+A + I VKA A W L+I +L+ N S
Sbjct: 124 MTSQTIGASGAIFGLLALFGIFYPNAELLLFIIPVKAKNAVWAALLIGFLISQFGNGSIS 183
Query: 196 G--HLSGILVGL 205
HL G L L
Sbjct: 184 STCHLGGALTAL 195
>gi|365961479|ref|YP_004943046.1| rhomboid family protein [Flavobacterium columnare ATCC 49512]
gi|365738160|gb|AEW87253.1| rhomboid family protein [Flavobacterium columnare ATCC 49512]
Length = 293
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 45/235 (19%)
Query: 11 LILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRL 70
I+ L+ I +G D L F Q +F +PWS + C
Sbjct: 33 FIVYLLKIGGMGVDVYQWVALSSNFKQ------LFCRPWSLISYC--------------- 71
Query: 71 ILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY 130
F H +HL +NM+ L GR + + LS+ + +F YI Y++F
Sbjct: 72 ----FFHSSFVHLIFNMLMLHFAGRIFTIYFTQKQLLSVYLLGGLFAGFIYI-FTYLLFP 126
Query: 131 I--TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL-----NINVKAIYAPWFELI 183
T T L + A++FA T QP Y +I NI + I + +
Sbjct: 127 FLSTKKTVLLVGASASIMAIVFATAT----YQP--YMKIRLALFGNIYIWQIALAFLVID 180
Query: 184 IIYLLVPNASFK-GHLSGILVGLTYTD-----TPIGWGLDYVVDKCQEMINGEEQ 232
+I L + N HL G G Y +G GL++V+D+ + +G+++
Sbjct: 181 LIQLPLKNTGGHISHLGGAFFGFVYIKLVQEGLDLGKGLNWVLDRVVNVFSGKKR 235
>gi|433633128|ref|YP_007266755.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
gi|432164721|emb|CCK62183.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
Length = 249
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ SAF H MHL NM +L + G LE G +F +L ++L +L Y++
Sbjct: 78 RLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALY----AVSALGGSVLVYLI 133
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL- 187
+ T+ S G LF ++ R L+++V+ + A LI+I L
Sbjct: 134 APLNTATAGASGAVFG----LFGATFMVARR--------LHLDVRWVVA----LIVINLA 177
Query: 188 ---LVPNASFKGHLSGILVG 204
L P S++GH+ G++ G
Sbjct: 178 FTFLAPAISWQGHVGGLVTG 197
>gi|435851157|ref|YP_007312743.1| putative membrane protein [Methanomethylovorans hollandica DSM
15978]
gi|433661787|gb|AGB49213.1| putative membrane protein [Methanomethylovorans hollandica DSM
15978]
Length = 290
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
++ F H D HL++NM+ L GR+LE G +F + + ++ Y L
Sbjct: 138 IVTHMFLHVDFGHLFFNMLVLFFFGRELENRIGKSRFWGVYFVSGIVAAIGYSLT----- 192
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
+ N S + +G S + + LT L PD + I +K YA ++ + ++
Sbjct: 193 -VANPYSAV----VGASGAILGVFATLTVLAPDMRIYVYFIPMKIKYALLLFALLDFAMM 247
Query: 190 PNA---SFKGHLSGILVGL 205
++ + HLSG+LVGL
Sbjct: 248 GSSDMVAHTAHLSGMLVGL 266
>gi|320533147|ref|ZP_08033872.1| peptidase, S54 family protein [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320134642|gb|EFW26865.1| peptidase, S54 family protein [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 215
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
V+ ++ R + +AF H D MH+ +NM++L + GR LE + G +F S+
Sbjct: 42 VVAAQEPWRFLTTAFLHADYMHIGFNMLTLWVLGRTLEPLLGRWRFTSI 90
>gi|255037309|ref|YP_003087930.1| rhomboid family protein [Dyadobacter fermentans DSM 18053]
gi|254950065|gb|ACT94765.1| Rhomboid family protein [Dyadobacter fermentans DSM 18053]
Length = 206
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q+ +Y R I S F H D HL +NM+SL G +E+++ ++F + + +
Sbjct: 35 VTQRNEYYRFITSGFVHADFGHLIFNMLSLWFVGESIERLFA-------MLFGS--SGTF 85
Query: 121 YILLAYIVFYITNDT-SELSH----------CAIGFSAVLFA 151
Y L Y+V + +D + L H + G SAVLFA
Sbjct: 86 YYLFLYLVGIVVSDIPTFLKHRKNSRYNSLGASGGVSAVLFA 127
>gi|359460821|ref|ZP_09249384.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 537
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Query: 51 TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLV 110
TL I ++ V D+ RL+ +AF H HL NM L L G +EK+ G +FL
Sbjct: 365 TLGALIPSEVVAG--DWWRLLAAAFLHFGIQHLSLNMFGLALLGPFVEKMLGTWRFLVSY 422
Query: 111 IFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI 170
+ + + L LL ++T S +G A++ + R Q ++
Sbjct: 423 LMTAIGSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQLRIIRQQSS---KVAAT 479
Query: 171 NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
++ I +I + P SF GH SG+++G
Sbjct: 480 RLRLIGLFVVIQMIFDAMTPQVSFIGHASGLVIG 513
>gi|398784354|ref|ZP_10547618.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
gi|396995277|gb|EJJ06295.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
Length = 303
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS-LY 120
+ + ++ RL+ + F H H+ +NM+SL G LE G +F++L + + S L
Sbjct: 134 VAEGEWYRLLTAMFLHQQVAHIAFNMLSLWWLGPPLEAALGRARFIALYLLAGLGGSALS 193
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
Y L A N S + AI +L A +L RL+ D ++ + +
Sbjct: 194 YFLAA------QNQPSLGASGAI--FGLLGATAVLLRRLRYDMKPVLILLGLN------- 238
Query: 181 ELIIIYLLVPNASFKGHLSGILVG 204
++ L PN +++ H+ G++VG
Sbjct: 239 --LVFTFLWPNIAWQAHVGGLVVG 260
>gi|408673736|ref|YP_006873484.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387855360|gb|AFK03457.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 212
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS-LYYILLAYIVFYITN 133
F HG H++ NM L + G LE G +FL+L + + L+ ++ Y + +
Sbjct: 56 FLHGGTGHIFSNMFGLYMFGPMLEHFLGSKRFLTLYLVSGIGACVLHGVVNLYEISQLPI 115
Query: 134 DTSE----LSHCAIGFSAVLFAMKTILTRLQPDAYQQI--LNINVKAIYA----PWFELI 183
D+ E +S +G S +F M RL P+ I L I +KA Y FE+
Sbjct: 116 DSPEYTMMMSIPMVGASGAIFGMLGAFARLFPNTEMIIFPLPIPIKAKYLVSLYALFEIF 175
Query: 184 I-IYLLVPNASFKGHLSGILVGL 205
IY ++P + H+ G++ G+
Sbjct: 176 SGIYSIMPGVAHFAHIGGLIFGI 198
>gi|422323890|ref|ZP_16404927.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
gi|353344683|gb|EHB88984.1| hypothetical protein HMPREF0737_00037 [Rothia mucilaginosa M508]
Length = 270
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 62 IQQRDYKRLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
+ + +Y RLI F H D MHL +NM+ L + G LE++ G KFL F+ + +L
Sbjct: 109 VHRGEYYRLITHGFLHSQNDPMHLVWNMIYLFIFGVSLERMMGRWKFL----FVYMAATL 164
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ-ILNINVKAIYAP 178
YI Y + T S G F + +L R Q D + +L I + + +
Sbjct: 165 GAGFSVYIFDYYSR-TVGASGGVYGLYGAFFVI--LLLRRQKDTARLFMLLIGIDVVQS- 220
Query: 179 WFELIIIYLLVPNASFKGHLSGILVG 204
L P+ S GH G++ G
Sbjct: 221 --------LFHPHISLAGHFGGLVSG 238
>gi|167752897|ref|ZP_02425024.1| hypothetical protein ALIPUT_01159 [Alistipes putredinis DSM 17216]
gi|167659966|gb|EDS04096.1| peptidase, S54 family [Alistipes putredinis DSM 17216]
Length = 213
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYK--RLILSAFEHGDDM 81
+ PP L L+ + +++ L P V A ++ + +L+ F HG
Sbjct: 8 SSTPPVVLNLIIINALMLLATELLPVGNRIVGALALFNVESPLFHSYQLVTYMFLHGGFS 67
Query: 82 HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN-DTSELSH 140
HL++NM +L + GR LE G +FL+ + V + +L+ ++ + N L
Sbjct: 68 HLFFNMFALWMFGRTLEYELGSKRFLTYYMVCGVGAGVLQLLVGWLEYRYGNVGMMALMV 127
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
+G S +F + + P+A +L I + A WF ++
Sbjct: 128 PTVGASGAVFGLLLAFGVMHPNAVIMLL-IPPIPMKAKWFVVV 169
>gi|410672092|ref|YP_006924463.1| rhomboid family protein [Methanolobus psychrophilus R15]
gi|409171220|gb|AFV25095.1| rhomboid family protein [Methanolobus psychrophilus R15]
Length = 287
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
LI F H HL++NM+ L G +LE+ G FL + + L Y L
Sbjct: 138 LITHLFLHNGFFHLFFNMMVLFFFGPELERRAGKATFLRVYFIAGIVAVLGYSL------ 191
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
TS+ + +G S + + L + P+ + I ++ ++A ++ +LL+
Sbjct: 192 ----TTSQPNIGVVGASGAIMGVFAALAVIAPEIRVYVYFIPMRIVHALILFALVDFLLI 247
Query: 190 PN---ASFKGHLSGILVGL 205
+ HL+GIL+GL
Sbjct: 248 GANDMVAHTAHLTGILIGL 266
>gi|326432288|gb|EGD77858.1| hypothetical protein PTSG_09492 [Salpingoeca sp. ATCC 50818]
Length = 433
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Query: 18 ILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEH 77
++ G +P T +V Q + ++ P +C+ I RL A H
Sbjct: 4 MVQAGFGAMPLVTRVVVVFQLLGFIIGASFPQVIPALCLQPATAIMYFQLHRLFTYAVIH 63
Query: 78 GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN-DTS 136
+ +H NM+ L++ +LE G ++ + + +T ++ Y + A + + I + S
Sbjct: 64 RNLIHFVLNMIGLLMVSSRLETSMGSVRYAHMFLAMTAVVAVTYCMGAALAYLIVGINFS 123
Query: 137 ELSHCAIGFSAVLFAMKTILTRL--QPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
+ C IG ++ L M I + + + + P LI + L P SF
Sbjct: 124 FWNICTIGLTSPLLTMAVIYVYCFSTSSSVISVYGLQMPPTILPPLMLICTHFL-PTTSF 182
Query: 195 KGHLSGILVGLTYTD 209
+ +G+++G Y
Sbjct: 183 WCNFTGLVMGYMYVQ 197
>gi|402758443|ref|ZP_10860699.1| hypothetical protein ANCT7_12185 [Acinetobacter sp. NCTC 7422]
Length = 205
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
+ ++ I +Q+ Y R I F H D MHL +NM++L G +E Y
Sbjct: 28 AVMNRLIFWPPAMQRGQYDRFITHGFIHADGMHLLFNMITLFFFGNIIESFY 79
>gi|241205206|ref|YP_002976302.1| rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859096|gb|ACS56763.1| Rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 579
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 16/150 (10%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
++++ + RL + F HG +HL +N VSL G E++ GW ++ + + F +
Sbjct: 248 SIVEHGQWWRLFTAPFMHGGILHLAFNCVSLWFAGGLFERLIGW-RWFAAIFFASA---- 302
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT-RLQPDAYQQILNINVKAIYAP 178
L + N + + A G LFA + R + L I I P
Sbjct: 303 ---LGGSVASVWINAPNTIGVGASGGIVGLFAAVIAASFRFRSGPIADTLRIGAAQILIP 359
Query: 179 WFELIIIYLLVP----NASFKGHLSGILVG 204
++ +L N + GH G L+G
Sbjct: 360 ---SLLPFLSAARGGENIDYAGHFGGALIG 386
>gi|381208752|ref|ZP_09915823.1| hypothetical protein LGrbi_02305 [Lentibacillus sp. Grbi]
Length = 252
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 28 PATLGLVFLQSMVYL--NIFRKPWSTL--DVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
P L+ +Q +++L P L D + + I Q Y RLI S F H MH+
Sbjct: 17 PVVAWLIIIQLVLWLLTGFLHTPLGNLIRDWGMGINFAISQGQYWRLITSIFLHAGLMHV 76
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLS 108
+N +L+L G LE++ G KF++
Sbjct: 77 LFNSFALVLFGPALEQMLGKVKFIT 101
>gi|436833412|ref|YP_007318628.1| rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384064825|emb|CCG98035.1| rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 262
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
+ PA L+ + +VY +D + QQ + +LI F HG+ HL+
Sbjct: 3 SFTPAVRTLLLVNVLVYFLTSSVREEVIDQFALHSLLSQQFNIIQLITHMFMHGNFSHLF 62
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
NM+ L++ G LEK +G +FL+ + + + Y+ + Y
Sbjct: 63 SNMLGLLVFGPLLEKTWGASRFLTFYLLTGLGAAALYLAVNY 104
>gi|124025914|ref|YP_001015030.1| hypothetical protein NATL1_12071 [Prochlorococcus marinus str.
NATL1A]
gi|123960982|gb|ABM75765.1| Hypothetical protein NATL1_12071 [Prochlorococcus marinus str.
NATL1A]
Length = 195
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLI-----LKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
R+I S F HGD HL N+ +I LK L+ Y + F++L++ L F I
Sbjct: 50 RMITSHFFHGDLNHLLANVSGIIVARYFLKSLGLKSDYFFLAFVALIMPLQAF-----IC 104
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF--- 180
+ + N S AIGFS VLF + + + L+I+ + P
Sbjct: 105 WCLDILVLGNPMS----LAIGFSGVLFGIDAFILMTTIYGKNKFLSISCELKKDPGLLKS 160
Query: 181 -----ELIIIYLLVPNASFKGHLSGILVGL 205
+ II+ +P S GH+SG+L G
Sbjct: 161 ISLLTGVGIIWSFLPGISLFGHMSGLLAGF 190
>gi|322515950|ref|ZP_08068891.1| rhomboid family protein [Streptococcus vestibularis ATCC 49124]
gi|322125624|gb|EFX96954.1| rhomboid family protein [Streptococcus vestibularis ATCC 49124]
Length = 224
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D RL+ F H H +NM++L GR E+I+G +FL L + V + + +L
Sbjct: 57 DLWRLVTPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGNAFTLLFT 116
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
V A G S LF + + L ++ +LN + A +I
Sbjct: 117 PNV------------IAAGASTSLFGLFAAIVILGYYSHSPLLNQLGRNYLALIVINLIF 164
Query: 186 YLLVPNASFKGHLSGILVG 204
L P+ GHL G++ G
Sbjct: 165 NLFTPSVGITGHLGGLVGG 183
>gi|375138853|ref|YP_004999502.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359819474|gb|AEV72287.1| putative membrane protein [Mycobacterium rhodesiae NBB3]
Length = 282
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++ RLI SAF H H+ +NM +L + G LE G +F SL + ++L
Sbjct: 103 VADGEWYRLISSAFLHYGPTHILFNMWALYVVGPPLEAALGRLRFASLYL----VSALGG 158
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI--LNINVKAIYAPW 179
+L Y++ + T+ S G F + RL D + + +N+
Sbjct: 159 SVLVYLLSALGAQTAGASGAIFGLFGATFVVG---KRLNLDVRWVVGLIALNLA------ 209
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
F +I + N S++GH+ G++ G
Sbjct: 210 FTFVIPLISSQNISWQGHIGGLVTG 234
>gi|302552712|ref|ZP_07305054.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
gi|302470330|gb|EFL33423.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
Length = 296
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ R++ S F H + H+ +NM+SL G LE G ++L+L + + L LA
Sbjct: 131 EWYRMVTSMFTHQEIWHIAFNMLSLWWLGGPLEAALGRVRYLALYL----VSGLAGSALA 186
Query: 126 YIVFYITNDTSELSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELII 184
Y++ T S G F A M+ + ++P +L IN+ ++P F
Sbjct: 187 YLLASPNTATLGASGAIFGLFGATAVLMRRLNYDMRP--IIALLAINLIFTFSPGF---- 240
Query: 185 IYLLVPNASFKGHLSGILVGL 205
N S++ H+ G++ G+
Sbjct: 241 ------NISWQAHIGGLVAGV 255
>gi|224537591|ref|ZP_03678130.1| hypothetical protein BACCELL_02471 [Bacteroides cellulosilyticus
DSM 14838]
gi|423226890|ref|ZP_17213355.1| hypothetical protein HMPREF1062_05541 [Bacteroides cellulosilyticus
CL02T12C19]
gi|224520788|gb|EEF89893.1| hypothetical protein BACCELL_02471 [Bacteroides cellulosilyticus
DSM 14838]
gi|392626761|gb|EIY20804.1| hypothetical protein HMPREF1062_05541 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 244
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVC--------ISADAVIQQRDYKRLILSAF 75
+ IP T L+ + +V+L LD+ ++ D + Q LI F
Sbjct: 2 NAIPTVTKNLLIINVLVFLATIVAQSYHLDLARYLGLHFFLADDFNVAQ-----LITYMF 56
Query: 76 EHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
HG HL++NM ++ + GR LE+++G +FLS + + L +L+ YI
Sbjct: 57 MHGGFTHLFFNMFAVWMFGRILEQVWGPKRFLSYYMICGIGAGLISMLVTYI 108
>gi|357443327|ref|XP_003591941.1| Transmembrane protein [Medicago truncatula]
gi|355480989|gb|AES62192.1| Transmembrane protein [Medicago truncatula]
Length = 317
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L+L G+ LE ++G +F+ + + + TSL + A ++YIT L GF
Sbjct: 83 SIVCLLLIGKLLEPVWGPREFIKFIFIVNILTSLCIFITAIALYYITRQEIYLYTPLSGF 142
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
V+ + ++ PD Q++ +N+K + P L+
Sbjct: 143 HGVISGFLVSIKQIIPD--QELPFVNIKMKWLPSIALL 178
>gi|449480070|ref|XP_004177070.1| PREDICTED: rhomboid domain-containing protein 2 [Taeniopygia
guttata]
Length = 312
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 11/163 (6%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
A + + RLI F + D + L V + E+ G K L +V ++
Sbjct: 60 PAALHDGEVHRLITYIFIYEDLISLACGTVIIWYFAGSFERNVGTVKHCILTATFSVLSA 119
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L Y+ L +V + A GF V FAM + T + V + P
Sbjct: 120 LLYLSLQPLVSRLLEVGD-----AKGFMPVAFAMLGVSTTRSRMKRTLLFGCRVPVVLVP 174
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVD 221
W L + VP++S G+L G+LVG Y G G + +D
Sbjct: 175 WLGLCPAWF-VPHSSLLGNLCGLLVGEAY-----GLGYCFCLD 211
>gi|359727457|ref|ZP_09266153.1| intramembrane protease [Leptospira weilii str. 2006001855]
Length = 197
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RNKNYHTLLTSGFIHADWMHLIFNMISFYSFGKNLEMTVGPIKFL 80
>gi|417780433|ref|ZP_12428195.1| peptidase, S54 family [Leptospira weilii str. 2006001853]
gi|410779475|gb|EKR64091.1| peptidase, S54 family [Leptospira weilii str. 2006001853]
Length = 197
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RNKNYHTLLTSGFIHADWMHLIFNMISFYSFGKNLEMTVGPIKFL 80
>gi|359461031|ref|ZP_09249594.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 239
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 27 PPATLGLVFLQSMVY----------LNIFRKPWSTLDVCISAD----AVIQQRDYKRLIL 72
P T GL+ L +++ L++F + W+ + + ++A + + ++ LI
Sbjct: 14 PYVTYGLIVLNVLIFGYELSLSPGQLSLFMQRWAVVPIELTASFGGFSAVDAGEWGTLIT 73
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
S F HG +H+ NM+ L + G +E+ G G+FL
Sbjct: 74 SQFLHGGFLHVAGNMLYLWIFGNNVEEQLGRGRFL 108
>gi|256374174|ref|YP_003097834.1| rhomboid family protein [Actinosynnema mirum DSM 43827]
gi|255918477|gb|ACU33988.1| Rhomboid family protein [Actinosynnema mirum DSM 43827]
Length = 298
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ RL+ S F H H+ NM SL + GR LE + G +FL+ V L++ + L
Sbjct: 132 EWWRLVTSGFLHLGVTHIGLNMASLYILGRDLEPVLGRARFLA-VYLLSLLGGSASVYLF 190
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
V +T S + +G V+ + + I+ INV +
Sbjct: 191 EEVVSLTAGASGAIYGLMGSLLVVLLRRRL----NATPVLAIIAINV-----------FL 235
Query: 186 YLLVPNASFKGHLSGILVGLTYT 208
+PN S GHL GI VG T
Sbjct: 236 SFSLPNISILGHLGGIAVGAAVT 258
>gi|116252699|ref|YP_768537.1| transmembrane rhomboid family protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257347|emb|CAK08442.1| putative transmembrane rhomboid family protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 579
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
++++ + RL + F HG +HL +N VSL G E++ GW F ++ + S
Sbjct: 247 QSIVEHGQWWRLFTAPFMHGGILHLAFNCVSLWFAGGLFERLIGWRWFAAIFFASALGGS 306
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT-RLQPDAYQQILNINVKAIYA 177
+ + + N + + A G LFA + R + L I I
Sbjct: 307 VASVWI--------NAPNTIGVGASGGIVGLFAAVIAASFRFRSGPIADTLRIGAAQILI 358
Query: 178 PWFELIIIYLLVP----NASFKGHLSGILVG 204
P ++ +L N + GH G L+G
Sbjct: 359 P---SLLPFLSAARGGENIDYAGHFGGALIG 386
>gi|392418856|ref|YP_006455461.1| putative membrane protein [Mycobacterium chubuense NBB4]
gi|390618632|gb|AFM19782.1| putative membrane protein [Mycobacterium chubuense NBB4]
Length = 285
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D RL+ +AF H H+ +NM +L + G LE G ++ +L + ++L +LA
Sbjct: 110 DLYRLLTAAFLHYGFTHILFNMWALYVVGAPLEAALGRLRYGALYL----LSALGGSVLA 165
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
Y++ + + T+ S G LF + L + I+ +N+ F II
Sbjct: 166 YLLSPLNSATAGASGAVFGLFGALFVVGRKLN-MDVRGVVVIIVLNLA------FTFIIP 218
Query: 186 YLLVPNASFKGHLSGILVG 204
+ N S++GH+ G++ G
Sbjct: 219 LVSSQNISWQGHIGGLVTG 237
>gi|170290174|ref|YP_001736990.1| rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174254|gb|ACB07307.1| Rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 452
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 29 ATLGLVFLQSMVYL-----NIF---RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDD 80
AT+ L+ + S++YL N F W T+ S + + R + S F H D
Sbjct: 18 ATISLIVINSIIYLATSYNNFFLSVSDYWVTVG-GFSPSLLTHTDQWYRFLTSMFLHADI 76
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
H+++NM L GR +E G +F+ L + + S+++ ++I
Sbjct: 77 FHIFFNMYFLFFAGRAVEDALGSTRFIFLYLISGLAASIFHSAYSFI 123
>gi|116327525|ref|YP_797245.1| intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116120269|gb|ABJ78312.1| Intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
Length = 197
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 27/147 (18%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY- 121
+ ++Y LI S F H D MHL +NM+S G+ LE G KFL L+Y
Sbjct: 36 RNKNYYTLITSGFIHEDWMHLIFNMISFYSFGKNLETTVGPVKFL-----------LFYL 84
Query: 122 --ILLAYIVFYITNDTSELSH---CAIGFSAVLFAMKTILTRLQPDAYQQILNINVK-AI 175
IL+ ++ + N + L + G VLFA TIL Y + I + AI
Sbjct: 85 GTILITSVISWRKNLENPLYATLGASGGVCGVLFA--TILFYPNLSLYMMFIPIPIPGAI 142
Query: 176 YAPWFELIIIYLLVPNASFK-GHLSGI 201
YA ++YL+ S K GH GI
Sbjct: 143 YA------VLYLVYAYFSSKSGHSDGI 163
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++ RL SAF H MHL +NM +L + G LE G +F +L ++L
Sbjct: 110 VADGEWYRLATSAFLHYGAMHLLFNMWALYVVGPPLEMWLGRLRFGALY----ALSALGG 165
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+L Y++ I T+ S G +F + + LN++++ I A
Sbjct: 166 SVLVYLLSPINAATAGASGAVFGLFGAMFVVA------------RKLNLDIRGIAAIIIL 213
Query: 182 LIIIYLLVP-----NASFKGHLSGILVGLT----YTDTPIG 213
++ + P S++GH+ G++ G Y P G
Sbjct: 214 NLVFTFVYPLISGQGISWQGHVGGLVTGAAIAGVYAYAPAG 254
>gi|340619653|ref|YP_004738106.1| serine endopeptidase [Zobellia galactanivorans]
gi|339734450|emb|CAZ97827.1| Serine endopeptidase, family S54 [Zobellia galactanivorans]
Length = 289
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
+F HG H+ +NM L + GR L ++ +FL+ + FL V LL+Y +F
Sbjct: 65 SFLHGGIFHIIWNMYVLYVAGRILLNLFDGRRFLN-IYFLGVILGGLLFLLSYNIF---P 120
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
++ IG SA + A+ + P+ +++ NVK F +++ + +P
Sbjct: 121 TLIGVNASLIGASAGVMAVLIFVCTYIPNQEVRLIFFNVKLWQIGLFVVLMDLVQIPMGG 180
Query: 194 FKG----HLSGILVGLTYTD-----TPIGWGLDYVVDKCQEMINGEEQE 233
G HL G L+G Y IG G +VD + E++
Sbjct: 181 NVGGRIAHLGGALLGYMYAKQLYNGKDIGEGFSKMVDAIANLFKKTEKK 229
>gi|363748985|ref|XP_003644710.1| hypothetical protein Ecym_2141 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888343|gb|AET37893.1| Hypothetical protein Ecym_2141 [Eremothecium cymbalariae
DBVPG#7215]
Length = 262
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Query: 58 ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF--LTV 115
+ A +++ RL L H HL +N +SL + E ++G F + ++ L +
Sbjct: 44 STASLKKIQLNRLTLYPLAHLSLAHLVFNCMSLFPQLTIFEAVHG--TFYTAIVLNMLAL 101
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
FT+++Y LL + F S++ + ++L + L+P YQ N + I
Sbjct: 102 FTAVFYCLLGMLFF----PNSQVGGASGWCFSLLGYYSAKESELRP-YYQVTANHKIPTI 156
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVG 204
P ++++ LL+P +SF GH+ G+ +G
Sbjct: 157 LFPLILVVLLSLLLPQSSFWGHIIGLCLG 185
>gi|385989630|ref|YP_005907928.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|385993221|ref|YP_005911519.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|424945902|ref|ZP_18361598.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|449062098|ref|YP_007429181.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
gi|339293175|gb|AEJ45286.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339296823|gb|AEJ48933.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|358230417|dbj|GAA43909.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|379026212|dbj|BAL63945.1| integral membrane protein [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|449030606|gb|AGE66033.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
Length = 212
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
LVF+ + + + R+ + + AV + Y RL+ SAF H MHL NM +L +
Sbjct: 12 LVFVMQVTVMGLERQ------LALWPPAVASGQTY-RLVTSAFLHYGAMHLLLNMWALYV 64
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
G LE G +F +L ++L +L Y++ + T+ S G LF
Sbjct: 65 VGPPLEMWLGRLRFGALY----AVSALGGSVLVYLIAPLNTATAGASGAVFG----LFGA 116
Query: 153 KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL----LVPNASFKGHLSGI----LVG 204
++ R L+++V+ + A LI+I L L P S++GH+ G+ LV
Sbjct: 117 TFMVARR--------LHLDVRWVVA----LIVINLAFTFLAPAISWQGHVGGLVTGALVA 164
Query: 205 LTYTDTP 211
TY P
Sbjct: 165 ATYVYAP 171
>gi|255585086|ref|XP_002533249.1| Transmembrane protein, putative [Ricinus communis]
gi|223526929|gb|EEF29134.1| Transmembrane protein, putative [Ricinus communis]
Length = 308
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+ + L++ G+ LE ++G +FL + + TS+ + A ++YIT + L GF
Sbjct: 74 STLCLLIMGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAIALYYITTQENYLYMPISGF 133
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL---IIIYLLVPNASFKGHLSGIL 202
VL + ++ PD Q++ + +KA + P L I + P + +L I+
Sbjct: 134 QGVLSGFLVGMKQIIPD--QELSVLRIKAKWLPSLALLLSIAVSFFTPESV--TYLPTII 189
Query: 203 VGLTYTDTPIGW-GLDYVVDKCQEMINGEEQEDMG 236
G TY + W L Y+ K + + G+ +D
Sbjct: 190 FG-TY----LSWIYLRYLQRKPETKLRGDPNDDFA 219
>gi|399041650|ref|ZP_10736664.1| putative membrane protein [Rhizobium sp. CF122]
gi|398060103|gb|EJL51937.1| putative membrane protein [Rhizobium sp. CF122]
Length = 1049
Score = 40.0 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 4 PRRYELGLILLLVHI----LHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISAD 59
P+ LI LLV I L G D P+ G +Q++ L ++ +
Sbjct: 267 PQVLSYVLISLLVAIYAGELIFGVD---PSQAGSPSIQTLFMLGATQQ-----------E 312
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
A++Q + RL + HG +HL +N ++L GR LE++ GW F ++
Sbjct: 313 ALLQDHQWWRLFTAPLLHGSIVHLGFNCLALWFAGRLLERLIGWRWFAAI 362
>gi|89099491|ref|ZP_01172367.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
gi|89085877|gb|EAR65002.1| hypothetical protein B14911_19975 [Bacillus sp. NRRL B-14911]
Length = 196
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I++ + RL F H H+ +N SL+L G LE+I G KF + + + ++
Sbjct: 53 IREGEVWRLATPIFMHSGFTHVLFNSFSLVLFGPALERIAGKAKFAGIYLITGISANVAT 112
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + + + + F+AV + K +++R + Q I+ I V
Sbjct: 113 LLLEPLTYTHVGSSGAIFGLFGFFAAVAYFRKDLMSR---ENSQIIITIAVIG------- 162
Query: 182 LIIIYLLVPNASFKGHLSGILVGL 205
+I+ + PN + H+ G + G
Sbjct: 163 -LIMTFIQPNINISAHIFGFISGF 185
>gi|347755936|ref|YP_004863500.1| hypothetical protein [Candidatus Chloracidobacterium thermophilum
B]
gi|347588454|gb|AEP12984.1| putative membrane protein [Candidatus Chloracidobacterium
thermophilum B]
Length = 424
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+I Q + RL++ F H +HL NM +L + G QLE +YG +F ++
Sbjct: 97 LIDQGEVWRLVVPMFLHIGMIHLLANMYALWVLGPQLESLYGSARF-----------TIL 145
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI--YAP 178
Y+L F + + G S LF M L Y+ + V+A
Sbjct: 146 YLLSGIGGFVASYFFAHPESIGAGASGALFGMFGALLVFV-YKYRAEIPPMVRATMQRGV 204
Query: 179 WFELII---IYLLVPNASFKGHLSGILVGL 205
W LII I +P S GH+ G+L G+
Sbjct: 205 WLTLIINLVITFSIPFISRSGHVGGLLTGI 234
>gi|331694001|ref|YP_004330240.1| peptidase S54, rhomboid domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326948690|gb|AEA22387.1| Peptidase S54, rhomboid domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 284
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ Q ++ R++ + F H +HL +NM++L + GR +E + G + L++ + + S
Sbjct: 120 VAQGEWWRVVTAGFLHYGPLHLLFNMLALWVIGRDMEMLLGRTRLLAVYLVALLGGS--- 176
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
A ++FY N SE++ + ++ + L R++ Q ++ I
Sbjct: 177 --AAALLFYGAN--SEVAGASGAVFGLMGGLAVALRRMRVPMTQVVVVI---------AI 223
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYT 208
I++ + +P S GHL G++VG T
Sbjct: 224 NIVLSVTLPGVSLIGHLGGLIVGAVAT 250
>gi|289193057|ref|YP_003458998.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
gi|288939507|gb|ADC70262.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
Length = 190
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
++I S F H + HL NM L + G LE + G K+L + + + +L YI A
Sbjct: 40 QIITSMFMHANITHLLVNMFVLFIFGTYLENMIGSKKYLIIFLLSGIIGNLAYIAYA--- 96
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQI------LNINVKAIYAPWFEL 182
Y+T D + ++G S +F + L L P + ++I V I +L
Sbjct: 97 -YLTGDYNP----SVGASGAIFGIMGALAILAPHLKVVVFPLPIPVSIRVAVIVFALIDL 151
Query: 183 III-YLLVPNASFKGHLSGILVGLTYTDT 210
I++ Y L + HL+G++ GL + +
Sbjct: 152 ILLPYSLKTGIAHITHLAGLISGLIFGKS 180
>gi|365862905|ref|ZP_09402633.1| Peptidase S54, rhomboid domain protein [Streptomyces sp. W007]
gi|364007635|gb|EHM28647.1| Peptidase S54, rhomboid domain protein [Streptomyces sp. W007]
Length = 308
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 62 IQQRDYKRLILSAFEHGDD------MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
I ++ RL+ AF H MHL +NM +L GR +E G ++L+L + V
Sbjct: 131 IADGEWYRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAV 190
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
S+ +V+ + DTS +G S +F + + + + +N
Sbjct: 191 GGSV-------LVYLLAPDTST-----VGASGAVFGLAAAYWVIHRRLGRDMAAVN---- 234
Query: 176 YAPWFELIIIYLLVPNA--SFKGHLSGILVGLTYT 208
+ ++++L+ A S++GHL G+L G T
Sbjct: 235 --RFMAGFLLWMLISAAFTSWQGHLGGLLTGALVT 267
>gi|255526224|ref|ZP_05393142.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296185575|ref|ZP_06853984.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
gi|255510064|gb|EET86386.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296049703|gb|EFG89128.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
Length = 323
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I + +Y RLI F HG MHL NM +L G +EKIYG ++L + + +S
Sbjct: 178 NYLIARGEYYRLITCMFLHGGIMHLLLNMFALYSLGPFIEKIYGKTRYLIIYFLSGIVSS 237
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGF--SAVLFAMK 153
++ + + V + S G +A++FAMK
Sbjct: 238 IFSYMFSTAV------SIGASGAIFGLLGAALIFAMK 268
>gi|299823020|ref|ZP_07054906.1| possible Rhomboid protease [Listeria grayi DSM 20601]
gi|299816549|gb|EFI83787.1| possible Rhomboid protease [Listeria grayi DSM 20601]
Length = 512
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I ++ RLI F H MH+ N V L + G EKIYG +F +L++ + F
Sbjct: 219 NPLIYAGEWWRLITPMFLHNGWMHIAANAVMLYIVGPWAEKIYGKWRF-ALILLIGGFA- 276
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTI---LTRLQPDAYQQILNINVKAI 175
+ ++ N+ H ++G S +FA+ L L+P+ Y + + NV +
Sbjct: 277 ------GNLASFVLNN-----HLSVGASTSVFAVFGALLYLVVLKPNLYAKTIGTNVATL 325
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVGL 205
I+I L GH+ G++ G
Sbjct: 326 VVV---NILIGLFSAEIDMMGHIGGLVGGF 352
>gi|333905961|ref|YP_004479832.1| rhomboid family membrane protein [Streptococcus parauberis KCTC
11537]
gi|333121226|gb|AEF26160.1| rhomboid family membrane protein [Streptococcus parauberis KCTC
11537]
gi|456369739|gb|EMF48639.1| GlpG protein (membrane protein of glp regulon) [Streptococcus
parauberis KRS-02109]
gi|457094502|gb|EMG25021.1| GlpG protein (membrane protein of glp regulon) [Streptococcus
parauberis KRS-02083]
Length = 224
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ + F H H N ++L+ G+ EK++G FL L + + +L+ V
Sbjct: 59 RLVSAIFVHIGWEHFLLNGLTLVFVGQLSEKLWGARHFLLLYLLSGIMGNLF-------V 111
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
T T A G S LF + +T L + Q N+++KA+ + LI + LL
Sbjct: 112 LAFTPST-----VAAGASTSLFGLFAAITVL--GYFSQ--NLSLKALSKSYQSLIFVNLL 162
Query: 189 ----VPNASFKGHLSGILVG 204
+PN S GH+ GI+ G
Sbjct: 163 MNIFMPNVSIAGHIGGIVGG 182
>gi|269976061|ref|ZP_06183065.1| rhomboid family membrane protein [Mobiluncus mulieris 28-1]
gi|307700490|ref|ZP_07637526.1| peptidase, S54 family [Mobiluncus mulieris FB024-16]
gi|269935889|gb|EEZ92419.1| rhomboid family membrane protein [Mobiluncus mulieris 28-1]
gi|307614297|gb|EFN93530.1| peptidase, S54 family [Mobiluncus mulieris FB024-16]
Length = 267
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 69 RLILSAFEHGDDM--HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R + +AF H M HL +N +L + GR LE I G K L + + SL L A
Sbjct: 59 RFLSAAFLHSIPMPFHLGFNCWALWVVGRALEPIMGHTKLLLSFVICALAASLACCLTAL 118
Query: 127 IVF--YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELII 184
+ ++T T S GF ++ A++ +L RL ++ IN +
Sbjct: 119 LNLQAWLT-FTVGASGAVFGFFGIMLAIQRML-RLPYTEMAALIGIN-----------FV 165
Query: 185 IYLLVPNASFKGHLSGILVGLT 206
I ++PN ++ HL G+ GL
Sbjct: 166 IGFVLPNVAWVAHLGGLAAGLA 187
>gi|219121723|ref|XP_002181210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407196|gb|EEC47133.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 342
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 58 ADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLS 108
++ +++ + RLI F HG H++ NM+SL G +E+++G G+FL+
Sbjct: 117 SEKILRGEELYRLITPVFLHGGFGHIFTNMISLSRVGPDVERLFGSGRFLT 167
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++ RL SAF H MHL +NM +L + G LE G +F +L ++L
Sbjct: 110 VADGEWYRLATSAFLHYGAMHLLFNMWALYVVGPPLEMWLGRLRFGALY----ALSALGG 165
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+L Y++ I T+ S G +F + + LN++++ I A
Sbjct: 166 SVLVYLLSPINAATAGASGAVFGLFGAMFVVA------------RKLNLDIRGIAAIIIL 213
Query: 182 LIIIYLLVP-----NASFKGHLSGILVGLT----YTDTPIG 213
++ + P S++GH+ G++ G Y P G
Sbjct: 214 NLVFTFVYPLISGQGISWQGHVGGLVTGAAIAGVYAYAPAG 254
>gi|344289781|ref|XP_003416619.1| PREDICTED: rhomboid domain-containing protein 2 [Loxodonta
africana]
Length = 367
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHC--AIGFSAVLFAM---KTILTRLQPDAYQQ 166
F VFT + I+ Y+ F + ++L A GF+ V FAM ++ +R++
Sbjct: 105 FTLVFTVISAII--YLSFEAVSSLTKLGEVEDARGFTPVAFAMLGVSSVRSRMR---RAL 159
Query: 167 ILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDT 210
+ + V ++ PW L+ I L+P SF ++ G+++GLTY T
Sbjct: 160 VFGVVVPSVLVPWL-LLGISWLIPQTSFLSNVCGLVIGLTYGVT 202
>gi|239986984|ref|ZP_04707648.1| hypothetical protein SrosN1_06732 [Streptomyces roseosporus NRRL
11379]
gi|291443931|ref|ZP_06583321.1| rhomboid family protein [Streptomyces roseosporus NRRL 15998]
gi|291346878|gb|EFE73782.1| rhomboid family protein [Streptomyces roseosporus NRRL 15998]
Length = 303
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 29/168 (17%)
Query: 62 IQQRDYKRLILSAFEHGDD------MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
I ++ RL+ AF H MHL +NM +L GR +E G ++L+L + V
Sbjct: 126 IADGEWYRLVTGAFLHLPPDASFGVMHLLFNMFALWNIGRAVEGQLGRARYLALYLLSAV 185
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN-VKA 174
S+ +V+ + DTS +G S +F + + + +N A
Sbjct: 186 GGSV-------LVYLLAPDTST-----VGASGAVFGLAAAYWVIHRRLGHDMAAVNRFMA 233
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDK 222
+ W L ++ S++GHL G+L G T +GL Y K
Sbjct: 234 GFLIWMVLSALF-----TSWQGHLGGLLTGALVT-----YGLAYAPAK 271
>gi|226952463|ref|ZP_03822927.1| rhomboid-like protein [Acinetobacter sp. ATCC 27244]
gi|294649751|ref|ZP_06727156.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|226836785|gb|EEH69168.1| rhomboid-like protein [Acinetobacter sp. ATCC 27244]
gi|292824360|gb|EFF83158.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 205
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 51 TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
++ I +Q+ Y R I F H D MHL +NM++L G +E Y
Sbjct: 29 VMNRLIFWPPAMQRGQYDRFITHGFVHADGMHLLFNMITLFFFGNIIESFY 79
>gi|456012071|gb|EMF45791.1| Rhomboid family protein [Planococcus halocryophilus Or1]
Length = 202
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
+ ++ I + + R F H MHL +NM SL L G +LE++ G +F+++
Sbjct: 46 VGSNFYIAEGQWWRFFTPMFLHSGVMHLLFNMFSLFLFGPELERLTGKIRFITI------ 99
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
Y+L + T L + +G S +F + L + + + + I
Sbjct: 100 -----YLLAGFFASAATYFLQPLDYSHVGASGAIFGVFGAFGALVYYGGRALPQLK-QII 153
Query: 176 YAPWFELIIIYLLVPN----ASFKGHLSGILVGLTY 207
I++ L PN A G ++G L+GL+Y
Sbjct: 154 LPIIVISIVMTFLTPNINVTAHIAGMITGFLIGLSY 189
>gi|421879273|ref|ZP_16310744.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C11]
gi|390446828|emb|CCF26864.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C11]
Length = 229
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+ + Y RL+ F H MH+ NM++L G E +G +FL L F + +++
Sbjct: 54 IAHNQAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAEHAFGSWRFLMLYAFGGIVGNIF 113
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
LL+ + ++G S+ LFAM L L Y+ N ++A A +
Sbjct: 114 SYLLSPLA------------ISVGASSALFAMFAGLI-LYGVRYRD--NPTIRAQGATFL 158
Query: 181 ELIIIY----LLVPNASFKGHLSGILVGLTYT 208
+++ LL P GH+ G++ G+ T
Sbjct: 159 LFVVLNLFSGLLAPTIDLWGHIGGLIGGMMST 190
>gi|298706212|emb|CBJ29253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 29 ATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMV 88
AT L+ L ++VYL R P T A A+ QQ + RL+ HG HL N +
Sbjct: 59 ATNVLLALNAIVYLFQMRYPAITKAGWKMAPAITQQGQWYRLLTPIVLHGSFTHLAVNSM 118
Query: 89 SLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAV 148
S G +E++ G K F+TV+T LA I + + ++G S
Sbjct: 119 SFSSVGPVVERVMGKAK------FVTVYT------LAGIAGNVLSCIVNPRTPSVGASGA 166
Query: 149 LFAM 152
+F M
Sbjct: 167 IFGM 170
>gi|407985614|ref|ZP_11166204.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
gi|407372772|gb|EKF21798.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
Length = 221
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + RL+ S F H +HL +NM +L + G LE G +F +L + + S
Sbjct: 98 VADGQWYRLLTSTFLHFGPVHLLFNMWALYVVGPPLESALGRLRFTALYLAGALGGS--- 154
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+L Y++ + T+ S G LFA ++ R LN++V+ + A
Sbjct: 155 -VLVYLLAPLNAATAGASGAVFG----LFAATLVIGRR--------LNLDVRWVLALIVI 201
Query: 182 LIIIYLLVPNASFKGHLS 199
++I VP S++GH+
Sbjct: 202 NLVITFSVPGISWQGHIG 219
>gi|308197805|gb|ADO17919.1| rhomboid protease 1 [Mycobacterium smegmatis]
Length = 296
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+Y RL+ S F H MHL +NM +L + G LEK G +F L + L +L
Sbjct: 122 EYYRLVTSMFLHYGAMHLLFNMWALYVVGPPLEKWLGLTRF----GVLYALSGLGGSVLV 177
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
Y++ + + T+ S G +F + + LN++V+AI ++
Sbjct: 178 YMLSPLNSATAGASGAIFGLFGAIFVVA------------RHLNLDVRAIGVIVVINLVF 225
Query: 186 YLLVP----NASFKGHLSGILVG 204
+ P S++GH+ G++ G
Sbjct: 226 TFVGPALGTAISWQGHIGGLVTG 248
>gi|411116458|ref|ZP_11388945.1| putative membrane protein [Oscillatoriales cyanobacterium JSC-12]
gi|410712561|gb|EKQ70062.1| putative membrane protein [Oscillatoriales cyanobacterium JSC-12]
Length = 518
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ R I + F H +HL NM+ L + G E G KFL FT + +L
Sbjct: 369 EWWRAIAAIFLHHGIVHLLTNMLGLYVFGALAEAALGRKKFL----ITYFFTGVGSMLAV 424
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAY----QQILNINVKAIYAPWFE 181
V +TN T++L+ +G S + M +Q + +I ++ I
Sbjct: 425 VFVSTLTNSTTQLT---VGASGAVLGMVGAEGAIQLKGWWVEKAKIAQERLRLIGIIMIL 481
Query: 182 LIIIYLLVPNASFKGHLSGILVGL 205
+ L+ P S GHLSG+++GL
Sbjct: 482 QLFSDLITPQVSIVGHLSGMILGL 505
>gi|329116435|ref|ZP_08245152.1| peptidase, S54 family [Streptococcus parauberis NCFD 2020]
gi|326906840|gb|EGE53754.1| peptidase, S54 family [Streptococcus parauberis NCFD 2020]
Length = 224
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ + F H H N ++L+ G+ EK++G FL L + + +L+ V
Sbjct: 59 RLVSAIFVHIGWEHFLLNGLTLVFVGQLSEKLWGARHFLLLYLLSGIMGNLF-------V 111
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
T T A G S LF + +T L + Q N+++KA+ + LI + LL
Sbjct: 112 LAFTPST-----VAAGASTSLFGLFAAITVL--GYFSQ--NLSLKALSKSYQSLIFVNLL 162
Query: 189 ----VPNASFKGHLSGILVG 204
+PN S GH+ GI+ G
Sbjct: 163 MNIFMPNVSIAGHIGGIVGG 182
>gi|116617786|ref|YP_818157.1| membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096633|gb|ABJ61784.1| Membrane-associated serine protease [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 227
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
+ +Y RL+ F H +H+ NM++L G +E+ +G KF L F + +++ L
Sbjct: 56 KHEYWRLLTPVFLHAGFLHIVTNMITLWFIGPLVERAFGSTKFFGLYFFGGIIGNIFSYL 115
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAM 152
LA S ++G S LFAM
Sbjct: 116 LAP------------SSVSVGASTALFAM 132
>gi|256963891|ref|ZP_05568062.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257416957|ref|ZP_05593951.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|307272082|ref|ZP_07553345.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
gi|307280665|ref|ZP_07561713.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|256954387|gb|EEU71019.1| membrane-associated serine protease [Enterococcus faecalis
HIP11704]
gi|257158785|gb|EEU88745.1| membrane-associated serine protease [Enterococcus faecalis ARO1/DG]
gi|306504031|gb|EFM73248.1| peptidase, S54 family protein [Enterococcus faecalis TX0860]
gi|306511198|gb|EFM80205.1| peptidase, S54 family protein [Enterococcus faecalis TX0855]
Length = 236
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L + + + +
Sbjct: 56 VAQNHEYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN-- 113
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A F N S + A+ F LF IL R D N + + +
Sbjct: 114 ---IASFAFGTPNSVSAGASTAL-FG--LFGAFVILGRHFRD------NPAIMYMVQRYS 161
Query: 181 ELIIIYLLV----PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
I+I LL + GH+ G++ GL + V QE N E+
Sbjct: 162 MFIVINLLFNLFSSSVDMMGHVGGLIGGLLVATA-------FAVPNRQEAFNKHER 210
>gi|384220483|ref|YP_005611649.1| hypothetical protein BJ6T_68120 [Bradyrhizobium japonicum USDA 6]
gi|354959382|dbj|BAL12061.1| hypothetical protein BJ6T_68120 [Bradyrhizobium japonicum USDA 6]
Length = 363
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
A I + +Y RL+ F H + +HL NM+ L+L G LEK G FL + + VF +
Sbjct: 54 SAAIARHEYWRLVAYGFLHVNFVHLTVNMLCLVLWGGHLEKRVGPAYFLIIYLCAMVFGA 113
Query: 119 L 119
+
Sbjct: 114 V 114
>gi|421593641|ref|ZP_16038177.1| hypothetical protein RCCGEPOP_30149 [Rhizobium sp. Pop5]
gi|403700367|gb|EJZ17554.1| hypothetical protein RCCGEPOP_30149 [Rhizobium sp. Pop5]
Length = 439
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
++ ++ RL + F HG +HL N V+L + GR E++ GW ++ + + F +
Sbjct: 109 IVGDGEWWRLFTAPFMHGSIIHLALNCVALWVAGRLFERLIGW-RWFAAIFFASA----- 162
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT-RLQPDAYQQILNINVKAIYAPW 179
L I ND + + A G LFA + + +P L I P
Sbjct: 163 --LGGSIASVWINDANTVGVGASGGIVGLFAAVIVASFHFRPTPIASSLQTGAIQILIP- 219
Query: 180 FELIIIYLLVPNAS---FKGHLSGILVG 204
L+ I+ + + GH G + G
Sbjct: 220 -SLLPIFNSARDGQTIDYAGHFGGAVTG 246
>gi|255729592|ref|XP_002549721.1| hypothetical protein CTRG_04018 [Candida tropicalis MYA-3404]
gi|240132790|gb|EER32347.1| hypothetical protein CTRG_04018 [Candida tropicalis MYA-3404]
Length = 286
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN--- 169
LTV L Y L A ++FY LS A F + + ++ + +P Y N
Sbjct: 103 LTVVAGLQYCL-AGLLFYPNTGVVGLSGIAFSFMSYMAYQES---KFKPIFYTWHFNNME 158
Query: 170 INVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ + IY P+F + +L P++SF GH++GIL G
Sbjct: 159 LKIYTIYLPFFIALFFMVLFPSSSFPGHVTGILTG 193
>gi|397671735|ref|YP_006513270.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
gi|395143082|gb|AFN47189.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
Length = 272
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + +++ +AF H D +H+ +NMV+L + G QLE + G +FL+L + + S
Sbjct: 102 VASGAWWQVLTNAFTHLDVIHIAFNMVALYVLGPQLESVLGRARFLALYLVSALTGS--- 158
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
A +V++ T+ + G S +F M
Sbjct: 159 ---AAVVWFSAPYTTTM-----GASGAIFGM 181
>gi|255974810|ref|ZP_05425396.1| membrane-associated serine protease [Enterococcus faecalis T2]
gi|255967682|gb|EET98304.1| membrane-associated serine protease [Enterococcus faecalis T2]
Length = 230
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L + + + +
Sbjct: 50 VAQNHEYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN-- 107
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A F N S + A+ F LF IL R D N + + +
Sbjct: 108 ---IASFAFGTPNSVSAGASTAL-FG--LFGAFVILGRHFRD------NPAIMYMVQRYS 155
Query: 181 ELIIIYLLV----PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
I+I LL + GH+ G++ GL + V QE N E+
Sbjct: 156 MFIVINLLFNLFSSSVDMMGHVGGLIGGLLVATA-------FAVPNRQEAFNKHER 204
>gi|363419988|ref|ZP_09308085.1| serine peptidase [Rhodococcus pyridinivorans AK37]
gi|359736660|gb|EHK85603.1| serine peptidase [Rhodococcus pyridinivorans AK37]
Length = 308
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+Y R++ S F H +HL NM +L + GR E + G ++LS+ + + S A
Sbjct: 132 EYIRILGSGFLHFGLLHLAVNMFALWVIGRDTELVLGRARYLSVYLVSILGGS------A 185
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQ--PDAYQQILNINVKAIYAPWFELI 183
++F T + + A+ +L A IL RL+ P I+ +NV
Sbjct: 186 AVMFMETGAVTAGASGAV--FGLLGAQAVILLRLRRSPAPVLTIVGLNV----------- 232
Query: 184 IIYLLVPNASFKGH 197
II + VP S GH
Sbjct: 233 IISITVPGISLWGH 246
>gi|413955676|gb|AFW88325.1| hypothetical protein ZEAMMB73_179598 [Zea mays]
Length = 293
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L+L G+ LE ++G + L + + + S + +++YIT + S L GF
Sbjct: 77 SIVGLLLFGKVLEPLWGAKELLKFIFIVNLSISACVFVTMIVLYYITQEESYLYTPVSGF 136
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
VL + + ++ PD Q LN+ V I A W I+ ++ V + F
Sbjct: 137 YGVLSGLLVGIKQILPD---QELNLFVFKISAKWIPSIVAFISVAVSFF 182
>gi|326791743|ref|YP_004309564.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326542507|gb|ADZ84366.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 187
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 55 CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLT 114
C+ + + Y RL H D H N + ++L G LE+ YG K L +++F
Sbjct: 41 CVYKSSPLNPLSYIRLFTHILGHADWQHFLNNFMLILLVGPMLEEKYGSKKLLGMIVFTA 100
Query: 115 VFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFA 151
T L I+F+ DT+ L I F +L +
Sbjct: 101 FITG-----LINIIFF---DTALLGASGIAFMLILLS 129
>gi|421111197|ref|ZP_15571676.1| peptidase, S54 family [Leptospira santarosai str. JET]
gi|410803379|gb|EKS09518.1| peptidase, S54 family [Leptospira santarosai str. JET]
Length = 197
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RDKNYYTLLTSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFL 80
>gi|375289754|ref|YP_005124294.1| hypothetical protein CD241_0025 [Corynebacterium diphtheriae 241]
gi|371579425|gb|AEX43092.1| putative membrane protein [Corynebacterium diphtheriae 241]
Length = 204
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 17/136 (12%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R++ + F H HL NM L GR++E G G+F I + S +L+ +
Sbjct: 67 RMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDPLA 126
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
T S G A+ AM RL+ D ++ I V Y+ LL
Sbjct: 127 -----PTVGASGAVYGLMAIFVAMS---YRLRRDLTAPLILIAVNVGYS---------LL 169
Query: 189 VPNASFKGHLSGILVG 204
+ S GHL G+L G
Sbjct: 170 MDGVSLWGHLGGLLTG 185
>gi|374297549|ref|YP_005047740.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359827043|gb|AEV69816.1| putative membrane protein [Clostridium clariflavum DSM 19732]
Length = 517
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 24 DTIPPATLGLVFLQSMVYL--NIFRKPWST------LDVCISADAVIQQRDYKRLILSAF 75
D +P T GL+ + +++L NI+ T + +++I +Y R + F
Sbjct: 181 DKVPFITYGLIIINVLMWLVMNIYALVKGTNVQSLFIPFGAKENSLIFAGEYWRFLTPIF 240
Query: 76 EHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDT 135
H D HL N +SL + GR +E +YG KF+ + + S+ + +
Sbjct: 241 LHADLEHLIMNCLSLFVFGRIVEGMYGHKKFVFIYFMAGIMGSIASFMFS---------- 290
Query: 136 SELSHCAIGFSAVLFAM 152
H A+G S +F +
Sbjct: 291 ---PHSAVGASGAIFGL 304
>gi|388512181|gb|AFK44152.1| unknown [Lotus japonicus]
Length = 309
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+ SL+ G+ LE I+G G+F + + TS+ + A ++YIT + L GF
Sbjct: 75 STFSLLFFGKLLEPIWGSGEFCKFIFVVNFLTSVSVFITAIALYYITRQENYLYMPLSGF 134
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELII 184
V+ L ++ PD Q++ I +K + P L++
Sbjct: 135 HGVISGFLVGLKQIIPD--QELPFIKIKTKWLPSITLLL 171
>gi|219849715|ref|YP_002464148.1| rhomboid family protein [Chloroflexus aggregans DSM 9485]
gi|219543974|gb|ACL25712.1| Rhomboid family protein [Chloroflexus aggregans DSM 9485]
Length = 271
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 31/190 (16%)
Query: 31 LGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQR----DYKRLILSAFEHGDDMHLYYN 86
+G+V+L S V F +P TL V + A + +R + RL+ + H + +H+++N
Sbjct: 54 IGIVYLLSCVLSGSFFQP--TLSVLVVLGAKVNERIAAGEVWRLLTATVLHANLIHIFFN 111
Query: 87 MVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFS 146
+L + G + E+ YG +FL L + V S+ L+ S A+G S
Sbjct: 112 GYALSVLGPETERFYGHVRFLVLYLLSGVGGSIASYALS-------------SAPAVGAS 158
Query: 147 AVLFAMKTILTR---LQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFK-----GHL 198
+F + L L Q V+ I A + +I LL+ A+ GHL
Sbjct: 159 GAIFGLIGGLGMFYYLNRQVLGQFGQDQVRGIVA----IAVINLLIGFAAQGVIDNWGHL 214
Query: 199 SGILVGLTYT 208
G++ G+ +
Sbjct: 215 GGLVSGVVVS 224
>gi|398335808|ref|ZP_10520513.1| intramembrane protease [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 199
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NMVS GR LE G KF+
Sbjct: 36 RNKNYYTLLTSGFIHADWMHLIFNMVSFYSFGRNLEITVGPIKFV 80
>gi|376250196|ref|YP_005137077.1| hypothetical protein CDHC03_0028 [Corynebacterium diphtheriae HC03]
gi|372111700|gb|AEX77759.1| putative membrane protein [Corynebacterium diphtheriae HC03]
Length = 205
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ R++ + F H HL NM L GR++E G G+F I + S +L+
Sbjct: 65 GWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ T S G A+ AM RL+ D ++ I V Y+
Sbjct: 125 PLA-----PTVGASGAVYGLMAIFVAMS---YRLRRDLTAPLILIAVNVGYS-------- 168
Query: 186 YLLVPNASFKGHLSGILVG 204
LL+ S GHL G+L G
Sbjct: 169 -LLMDGVSLWGHLGGLLTG 186
>gi|419861887|ref|ZP_14384511.1| hypothetical protein W5M_11313 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387981722|gb|EIK55267.1| hypothetical protein W5M_11313 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 205
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ R++ + F H HL NM L GR++E G G+F I + S +L+
Sbjct: 65 GWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ T S G A+ AM RL+ D ++ I V Y+
Sbjct: 125 PLA-----PTVGASGAVYGLMAIFVAMS---YRLRRDLTAPLILIAVNVGYS-------- 168
Query: 186 YLLVPNASFKGHLSGILVG 204
LL+ S GHL G+L G
Sbjct: 169 -LLMDGVSLWGHLGGLLTG 186
>gi|376247391|ref|YP_005139335.1| hypothetical protein CDHC04_0024 [Corynebacterium diphtheriae HC04]
gi|372113959|gb|AEX80017.1| putative membrane protein [Corynebacterium diphtheriae HC04]
Length = 205
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ R++ + F H HL NM L GR++E G G+F I + S +L+
Sbjct: 65 GWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ T S G A+ AM RL+ D ++ I V Y+
Sbjct: 125 PLA-----PTVGASGAVYGLMAIFVAMS---YRLRRDLTAPLILIAVNVGYS-------- 168
Query: 186 YLLVPNASFKGHLSGILVG 204
LL+ S GHL G+L G
Sbjct: 169 -LLMDGVSLWGHLGGLLTG 186
>gi|294626557|ref|ZP_06705155.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664949|ref|ZP_06730262.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599124|gb|EFF43263.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605282|gb|EFF48620.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 202
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW--GKFLSLVIFLTVFT 117
AV + R Y RL+ F H D HL +NM++L GR +E + G L+ +F
Sbjct: 33 AVDKHRQYDRLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFY---- 88
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
L ++++ + Y+ N + ++ ++G S + A+ LQP +L I AI
Sbjct: 89 -LAALVVSILPSYLKNQKNP-NYLSLGASGAVSAVLFAFILLQPWTIILVLFIPAPAI 144
>gi|118576956|ref|YP_876699.1| uncharacterized membrane protein [Cenarchaeum symbiosum A]
gi|118195477|gb|ABK78395.1| uncharacterized membrane protein [Cenarchaeum symbiosum A]
Length = 255
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 29 ATLGLVFLQSMVYLNI--FRKP--------WSTLDVCISADAVIQQRD---------YKR 69
A +G+ Q+MV F P W + C++ + I+ + Y
Sbjct: 25 ANVGVFIYQAMVAGQFWEFSSPGAASMFYEWGAVPACVTGSSFIEPQGIRMACPDMPYVS 84
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
L+ S F HG MHL NM+ L + G +E +G KF + I V L +IL+
Sbjct: 85 LLSSMFMHGGLMHLGGNMLFLWIFGDNIELKFGRAKFFLIYIAWGVGAGLAHILI 139
>gi|376244587|ref|YP_005134826.1| hypothetical protein CDHC01_0025 [Corynebacterium diphtheriae HC01]
gi|372107217|gb|AEX73278.1| putative membrane protein [Corynebacterium diphtheriae HC01]
Length = 205
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 17/136 (12%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R++ + F H HL NM L GR++E G G+F I + S +L+ +
Sbjct: 68 RMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDPLA 127
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
T S G A+ AM RL+ D ++ I V Y+ LL
Sbjct: 128 -----PTVGASGAVYGLMAIFVAMS---YRLRRDLTAPLILIAVNVGYS---------LL 170
Query: 189 VPNASFKGHLSGILVG 204
+ S GHL G+L G
Sbjct: 171 MDGVSLWGHLGGLLTG 186
>gi|148652124|ref|YP_001279217.1| rhomboid family protein [Psychrobacter sp. PRwf-1]
gi|148571208|gb|ABQ93267.1| Rhomboid family protein [Psychrobacter sp. PRwf-1]
Length = 206
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+ + ++ R I F H D HL +NM +L GR +E+ + +FL F+ V+ L
Sbjct: 39 AVNKGEWYRFITHGFVHADSTHLLFNMFTLYFFGRAVERFF--NQFLGGFGFVAVY--LG 94
Query: 121 YILLAYIVFYI--TNDTSELSHCAI-GFSAVLFA 151
I++A I Y+ ND S A G SA+LF+
Sbjct: 95 AIIVAMIPSYLQHKNDPRYRSLGASGGVSAILFS 128
>gi|88803293|ref|ZP_01118819.1| putative transmembrane rhomboid family protein [Polaribacter
irgensii 23-P]
gi|88780859|gb|EAR12038.1| putative transmembrane rhomboid family protein [Polaribacter
irgensii 23-P]
Length = 284
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 29/168 (17%)
Query: 47 KPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKF 106
KPWS L F H + +HL +NM++L G + + +
Sbjct: 64 KPWSILSY-------------------GFLHANFIHLIFNMITLYFVGNLFTQYFTQKQT 104
Query: 107 LSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ 166
L+ +F T+F + +IL S L + G SA+ + T + P+ +
Sbjct: 105 LNFYLFGTLFGGVLFILSQSYFPLFEGRNSTLVGASAGISAIFIGISTYM----PNYELK 160
Query: 167 ILNINVKAIYA---PWFELIIIYLLVPNA--SFKGHLSGILVGLTYTD 209
I + ++ W L II L+ PNA SF HL G L G Y +
Sbjct: 161 IRFLGFVKLWHLALIWLALDIIGLVGPNAGGSF-SHLGGSLFGFLYVN 207
>gi|441521785|ref|ZP_21003443.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
gi|441458723|dbj|GAC61404.1| rhomboid family protein [Gordonia sihwensis NBRC 108236]
Length = 248
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQ----------RDYKRLILSAFE 76
P T GL+ + ++ + + T ++ + + ++QQ +Y RL+ S F
Sbjct: 26 PVVTYGLIAVNLAAFIAVVLQAGGTSNLLLKSS-IMQQGALVTGLGLENEYWRLLTSGFL 84
Query: 77 HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
H +H+ NM+SL L G LE++ G ++L++
Sbjct: 85 HWSILHVAMNMISLYLIGADLERVLGPARYLAV 117
>gi|430745812|ref|YP_007204941.1| hypothetical protein Sinac_5094 [Singulisphaera acidiphila DSM
18658]
gi|430017532|gb|AGA29246.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 306
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF 116
S+D + + +L+ + F H HL +NMV L + GR++E YG F++ + V
Sbjct: 55 SSDGIFRHGYVWQLLTATFMHAGVYHLLWNMVFLWMVGREMESFYGTRDFVAFYLCAAVL 114
Query: 117 TSLYYI 122
++L ++
Sbjct: 115 STLGWV 120
>gi|375292001|ref|YP_005126540.1| hypothetical protein CDB402_0026 [Corynebacterium diphtheriae INCA
402]
gi|376241724|ref|YP_005132576.1| hypothetical protein CDCE8392_0024 [Corynebacterium diphtheriae
CDCE 8392]
gi|376289234|ref|YP_005161481.1| hypothetical protein CDC7B_0026 [Corynebacterium diphtheriae C7
(beta)]
gi|371581672|gb|AEX45338.1| putative membrane protein [Corynebacterium diphtheriae INCA 402]
gi|372102630|gb|AEX66227.1| putative membrane protein [Corynebacterium diphtheriae C7 (beta)]
gi|372104966|gb|AEX71028.1| putative membrane protein [Corynebacterium diphtheriae CDCE 8392]
Length = 214
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ R++ + F H HL NM L GR++E G G+F I + S +L+
Sbjct: 74 GWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 133
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ T S G A+ AM RL+ D ++ I V Y+
Sbjct: 134 PLA-----PTVGASGAVYGLMAIFVAMS---YRLRRDLTAPLILIAVNVGYS-------- 177
Query: 186 YLLVPNASFKGHLSGILVG 204
LL+ S GHL G+L G
Sbjct: 178 -LLMDGVSLWGHLGGLLTG 195
>gi|410940231|ref|ZP_11372047.1| peptidase, S54 family [Leptospira noguchii str. 2006001870]
gi|410784675|gb|EKR73650.1| peptidase, S54 family [Leptospira noguchii str. 2006001870]
Length = 199
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
+ ++Y L+ S F H D MHL +NMVS GR LE G
Sbjct: 36 RNKNYYTLLTSGFIHADWMHLIFNMVSFYSFGRNLEMTVG 75
>gi|359683182|ref|ZP_09253183.1| intramembrane protease [Leptospira santarosai str. 2000030832]
gi|410450906|ref|ZP_11304933.1| peptidase, S54 family [Leptospira sp. Fiocruz LV3954]
gi|418746239|ref|ZP_13302569.1| peptidase, S54 family [Leptospira santarosai str. CBC379]
gi|418752404|ref|ZP_13308670.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|422002893|ref|ZP_16350127.1| intramembrane protease [Leptospira santarosai serovar Shermani str.
LT 821]
gi|409967293|gb|EKO35124.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|410015218|gb|EKO77323.1| peptidase, S54 family [Leptospira sp. Fiocruz LV3954]
gi|410792786|gb|EKR90711.1| peptidase, S54 family [Leptospira santarosai str. CBC379]
gi|417258363|gb|EKT87751.1| intramembrane protease [Leptospira santarosai serovar Shermani str.
LT 821]
gi|456873624|gb|EMF88986.1| peptidase, S54 family [Leptospira santarosai str. ST188]
Length = 197
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RDKNYYTLLTSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFL 80
>gi|38232669|ref|NP_938436.1| hypothetical protein DIP0027 [Corynebacterium diphtheriae NCTC
13129]
gi|376253148|ref|YP_005141607.1| hypothetical protein CDPW8_0020 [Corynebacterium diphtheriae PW8]
gi|376256043|ref|YP_005143934.1| hypothetical protein CDVA01_0025 [Corynebacterium diphtheriae VA01]
gi|376286557|ref|YP_005159123.1| hypothetical protein CDBH8_0029 [Corynebacterium diphtheriae BH8]
gi|376292146|ref|YP_005163820.1| hypothetical protein CDHC02_0028 [Corynebacterium diphtheriae HC02]
gi|38198927|emb|CAE48538.1| Putative membrane protein [Corynebacterium diphtheriae]
gi|371583891|gb|AEX47556.1| putative membrane protein [Corynebacterium diphtheriae BH8]
gi|372109469|gb|AEX75529.1| putative membrane protein [Corynebacterium diphtheriae HC02]
gi|372116232|gb|AEX68702.1| putative membrane protein [Corynebacterium diphtheriae PW8]
gi|372118560|gb|AEX82294.1| putative membrane protein [Corynebacterium diphtheriae VA01]
Length = 205
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ R++ + F H HL NM L GR++E G G+F I + S +L+
Sbjct: 65 GWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ T S G A+ AM RL+ D ++ I V Y+
Sbjct: 125 PLA-----PTVGASGAVYGLMAIFVAMS---YRLRRDLTAPLILIAVNVGYS-------- 168
Query: 186 YLLVPNASFKGHLSGILVG 204
LL+ S GHL G+L G
Sbjct: 169 -LLMDGVSLWGHLGGLLTG 186
>gi|403052072|ref|ZP_10906556.1| hypothetical protein AberL1_11122 [Acinetobacter bereziniae LMG
1003]
Length = 206
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY-GWGKFLSLVIF 112
+ I+ Y R + F H D MHL++NM +L GR +E + G+ + V+F
Sbjct: 37 SAIKHGQYDRFLTHGFIHNDGMHLFFNMFTLYFFGRNIEWFFRGYLSGMGFVLF 90
>gi|296127888|ref|YP_003635138.1| rhomboid family protein [Cellulomonas flavigena DSM 20109]
gi|296019703|gb|ADG72939.1| Rhomboid family protein [Cellulomonas flavigena DSM 20109]
Length = 238
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 19/138 (13%)
Query: 69 RLILSAFEHGDDM-HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
R + +AF H + H+ +NMV+L + G LE+ G +F +L + + S+ +LLA
Sbjct: 70 RFLTAAFLHSTGVFHILFNMVALWMVGPSLEQTLGRARFATLYLVSALGGSVGAVLLAPA 129
Query: 128 VFYITNDTSELSHCAIG-FSAVLFAMKTILTRLQPDAYQ--QILNINVKAIYAPWFELII 184
S G F AVL +L R+ DA IL +N +
Sbjct: 130 TGSWLTPIVGASGAVFGMFGAVL----VVLRRMGRDAGPIIGILVLNG-----------V 174
Query: 185 IYLLVPNASFKGHLSGIL 202
+ ++PN +++ HL G++
Sbjct: 175 LGFVLPNIAWQAHLGGLV 192
>gi|15613080|ref|NP_241383.1| hypothetical protein BH0517 [Bacillus halodurans C-125]
gi|10173130|dbj|BAB04236.1| BH0517 [Bacillus halodurans C-125]
Length = 248
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWST--LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
P LVF+ +++ I P + + + Q +Y RLI F H HL +
Sbjct: 16 PIITALVFIHIALFVWIHLLPGGAWVYATGVGFNLAVSQGEYWRLITPVFLHVSIGHLVF 75
Query: 86 NMVSLILKGRQLEKIYGWGKFL 107
N +L++ G LE++ G GKFL
Sbjct: 76 NSFALVIFGPALERMLGKGKFL 97
>gi|300120076|emb|CBK19630.2| unnamed protein product [Blastocystis hominis]
Length = 152
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 110 VIFL-TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL 168
VIFL T+ L Y+L+ ++ I ++S L A GFS V+F++ ++T ++
Sbjct: 4 VIFLFTIINGLLYVLIYKLLSLI--NSSFLYVAAAGFSGVIFSLLLVMT--------YVI 53
Query: 169 NINVKAIYA------PWFE---LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYV 219
+++ +I+ W+ LI++ +L+P SF GHL GIL G + + W +
Sbjct: 54 DVDTLSIFGLFSVPRKWYAIIYLILMSVLIPGVSFIGHLCGILSGYLFVFGYLNWAIP-- 111
Query: 220 VDKCQEMINGEEQEDMGEEQKQN 242
+ E+ +G K++
Sbjct: 112 ----MHCLVAMEKGFIGSVLKKS 130
>gi|256763410|ref|ZP_05503990.1| membrane-associated serine protease [Enterococcus faecalis T3]
gi|256684661|gb|EEU24356.1| membrane-associated serine protease [Enterococcus faecalis T3]
Length = 230
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L + + + +
Sbjct: 50 VAQNHEYWRFITPIFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN-- 107
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A F N S + A+ F LF IL R D N + + +
Sbjct: 108 ---IASFAFGTPNSVSAGASTAL-FG--LFGAFVILGRHFRD------NPAIMYMVQRYS 155
Query: 181 ELIIIYLLV----PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
I+I LL + GH+ G++ GL + V QE N E+
Sbjct: 156 MFIVINLLFNLFSSSVDMMGHVGGLIGGLLVATA-------FAVPNRQEAFNKHER 204
>gi|449134320|ref|ZP_21769821.1| glpG protein [Rhodopirellula europaea 6C]
gi|448886950|gb|EMB17338.1| glpG protein [Rhodopirellula europaea 6C]
Length = 340
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG-WGKFLSLVIFLTVFTSLY 120
I++ + R+I A HG MHL +NM+ + + G +E+++G W ++FL T +
Sbjct: 195 IKKGEVWRIITPAVLHGSPMHLVFNMMWVYMLGGVIERLHGSW-----FLVFLMTITHVS 249
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAV---LFAMKTILTRLQPDAYQQILNINVKAIYA 177
IV + D E S AIG S +F I R QP I NV I
Sbjct: 250 ----GMIVQIVLPDWLE-SPMAIGASGAALGIFGFIWIRPRFQPTYPVGIPPFNVYLILG 304
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVGLT 206
F + + L+ + H+ G++ G+
Sbjct: 305 --FTVACMTPLIQGIANGAHVGGLVAGMA 331
>gi|268317852|ref|YP_003291571.1| rhomboid family protein [Rhodothermus marinus DSM 4252]
gi|345304133|ref|YP_004826035.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
gi|262335386|gb|ACY49183.1| Rhomboid family protein [Rhodothermus marinus DSM 4252]
gi|345113366|gb|AEN74198.1| Rhomboid family protein [Rhodothermus marinus SG0.5JP17-172]
Length = 203
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+++ R+Y R+I + F H HL +NM++L GR +E + G +FL
Sbjct: 40 ILRGREYHRMITAGFVHVGWAHLAFNMITLFFFGRPMEVLMGPVRFL 86
>gi|445422784|ref|ZP_21436494.1| peptidase, S54 family [Acinetobacter sp. WC-743]
gi|444756135|gb|ELW80690.1| peptidase, S54 family [Acinetobacter sp. WC-743]
Length = 206
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY-GWGKFLSLVIF 112
+ I+ Y R + F H D MHL++NM +L GR +E + G+ + V+F
Sbjct: 37 SAIKHGQYDRFLTHGFIHNDGMHLFFNMFTLYFFGRNIEWFFRGYLSGMGFVLF 90
>gi|423721476|ref|ZP_17695658.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383365527|gb|EID42822.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 204
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
I +A I++ +Y R + H H+ N +SLIL G LE + G GKFL L I +
Sbjct: 47 IGFNAAIKKGEYWRFVTPLILHVRFEHMVINSISLILFGPALENMLGKGKFLILYIGSGI 106
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAV-LFAMKTILTRLQPDAYQQILNINVKA 174
F ++ L + SH S LF M L + D + + +
Sbjct: 107 FANVATFFLL---------PAMYSHAGASGSIFGLFGMYGYLATFRRDIIEA---QHARL 154
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVG 204
++A + I P+A+ HL G L G
Sbjct: 155 LFAVLCVSLFIAFTAPDANMAAHLFGFLGG 184
>gi|417937077|ref|ZP_12580383.1| peptidase, S54 family [Streptococcus infantis X]
gi|343399519|gb|EGV12041.1| peptidase, S54 family [Streptococcus infantis X]
Length = 230
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL + F H H NM+SL GRQ+E+I+G +F + + + +L+ +V
Sbjct: 66 RLFSATFVHIGLQHFLVNMLSLYFLGRQMEQIFGSKQFFFIYLLSGMMGNLF-----VLV 120
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL- 187
F T+ S G +FA +L + Y Q L + + L++I L
Sbjct: 121 FSPDAITAGASTALYG----MFASIVVLRYASRNPYLQQLGQS-------YLSLLVINLV 169
Query: 188 ---LVPNASFKGHLSGILVG 204
L+P S GHL G + G
Sbjct: 170 GSVLIPGISLAGHLGGAVGG 189
>gi|297200957|ref|ZP_06918354.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712264|gb|EDY56298.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 294
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ Y RL+ S F H + H+ +NM+SL G LE G ++L+ V F+ + L
Sbjct: 126 VADGQYYRLVTSMFAHQEIWHIGFNMMSLWWLGGPLEAALGRARYLT-VYFV---SGLAG 181
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
LAY++ + T S G LF +L R LN +++ I A
Sbjct: 182 GALAYLLASPSTATLGASGAIFG----LFGATAVLMRR--------LNYDLRPIIA---- 225
Query: 182 LIIIYLLV----PNASFKGHLSGILVGL 205
L++I L+ S++ H+ G++ GL
Sbjct: 226 LLVINLIFTFSWSGISWQAHIGGLVAGL 253
>gi|417938970|ref|ZP_12582263.1| peptidase, S54 family [Streptococcus infantis SK970]
gi|343390415|gb|EGV02995.1| peptidase, S54 family [Streptococcus infantis SK970]
Length = 224
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL + F H H NM+SL GRQ+E+I+G +F + + + +L+ +V
Sbjct: 60 RLFSATFVHIGLEHFLVNMLSLYFLGRQMEQIFGSKQFFFIYLLSGMMGNLF-----VLV 114
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL- 187
F T+ S G +FA +L + Y Q L + + L++I L
Sbjct: 115 FSPNAITAGASTALYG----MFASIVVLRYASRNPYLQQLGQS-------YLSLLVINLV 163
Query: 188 ---LVPNASFKGHLSGILVG 204
L+P S GHL G + G
Sbjct: 164 GSVLIPGISLAGHLGGAVGG 183
>gi|379731354|ref|YP_005323550.1| rhomboid family protein [Saprospira grandis str. Lewin]
gi|378576965|gb|AFC25966.1| rhomboid family protein [Saprospira grandis str. Lewin]
Length = 223
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P L ++ + ++ L F+K + + + ++++ R S H D MHL NM
Sbjct: 15 PVNLAILVITVIISLQAFQKREIYAQLIFNPAVIANRKEWYRFFSSGLIHADGMHLGLNM 74
Query: 88 VSLILKGRQLEKIYG------WGKFLSLVIFLTVFTS 118
L G Q+E+++ WG L L+++++ +
Sbjct: 75 FVLYQFGGQVEQVFSLVFGNIWGHILYLLLYVSALAA 111
>gi|213964252|ref|ZP_03392484.1| rhomboid family protein [Capnocytophaga sputigena Capno]
gi|213953113|gb|EEB64463.1| rhomboid family protein [Capnocytophaga sputigena Capno]
Length = 219
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F HGD MHL++NM +L G LE I+G KFL V +L + ++ Y +Y+
Sbjct: 22 FMHGDFMHLFFNMYALWAFGTPLENIWGRNKFLFFYFSCGVGAALLHTMVNY--YYVHQG 79
Query: 135 TSELSHCAIGFSAVLFAMK 153
L + + V+ A+
Sbjct: 80 LEALQNVGVSTEEVISALS 98
>gi|118467848|ref|YP_889287.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399989299|ref|YP_006569649.1| membrane protein in rhomboid family [Mycobacterium smegmatis str.
MC2 155]
gi|118169135|gb|ABK70031.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399233861|gb|AFP41354.1| Conserved membrane protein in rhomboid family [Mycobacterium
smegmatis str. MC2 155]
Length = 250
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+Y RL+ S F H MHL +NM +L + G LEK G +F L + L +L
Sbjct: 76 EYYRLVTSMFLHYGAMHLLFNMWALYVVGPPLEKWLGLTRF----GVLYALSGLGGSVLV 131
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
Y++ + + T+ S G +F + + LN++V+AI ++
Sbjct: 132 YMLSPLNSATAGASGAIFGLFGAIFVVA------------RHLNLDVRAIGVIVVINLVF 179
Query: 186 YLLVP----NASFKGHLSGILVG 204
+ P S++GH+ G++ G
Sbjct: 180 TFVGPALGTAISWQGHIGGLVTG 202
>gi|283457103|ref|YP_003361666.1| membrane protein [Rothia mucilaginosa DY-18]
gi|283133081|dbj|BAI63846.1| uncharacterized membrane protein [Rothia mucilaginosa DY-18]
Length = 303
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 62 IQQRDYKRLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
+Q +Y RLI F H D MHL +NM+ L + G LE++ G KFL + + VF +
Sbjct: 142 VQHGEYYRLISYGFLHSQNDPMHLVWNMIYLFIFGVSLERMMGRWKFLVVYLGSIVFGAF 201
>gi|326792345|ref|YP_004310166.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326543109|gb|ADZ84968.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 518
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWST--------LDVCISADAVIQQRDYKRLILSAFEHG 78
P T GL+ + +VYL + ++ + + +I + +Y R I F HG
Sbjct: 182 PILTYGLIAINILVYLALVLYERTSGISYGQLIIQFGAKVNNLILEGEYWRFITPIFLHG 241
Query: 79 DDMHLYYNMVSLILKGRQLEKIYGWGKFLS 108
MHL N SL + G +E++YG G+F++
Sbjct: 242 SLMHLLVNCYSLYIIGSLVERLYGRGRFIT 271
>gi|326779930|ref|ZP_08239195.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326660263|gb|EGE45109.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 303
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 62 IQQRDYKRLILSAFEHGDD------MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
I ++ RL+ AF H MHL +NM +L GR +E G ++L+L + V
Sbjct: 126 IADGEWYRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAV 185
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN-VKA 174
S+ +V+ + DTS +G S +F + + + +N A
Sbjct: 186 GGSV-------LVYLLAPDTST-----VGASGAVFGLAAAYWVIHRRLGHDMAAVNRFMA 233
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ W L ++ S++GHL G+L G
Sbjct: 234 GFLVWMVLSALF-----TSWQGHLGGLLTG 258
>gi|85817538|gb|EAQ38712.1| rhomboid family protein [Dokdonia donghaensis MED134]
Length = 294
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
AF H HL++NMV L + R + ++ KFL++ + + + + LL Y V +
Sbjct: 68 AFLHSGFGHLFWNMVFLYVFSRFVLNLFSEKKFLAIYLLGAIAGGVLFALL-YNVLPVFR 126
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
T L +G SA + A+ + PDA +I NVK + F ++ LL+ +
Sbjct: 127 GTGVL----LGASAAVNAIVVFIGTYTPDAEVRIFTFNVKLWWIAAFIVVKDILLLDAGN 182
Query: 194 FKG---HLSGILVGLTYTD 209
G HL G G Y
Sbjct: 183 AGGLISHLGGAAFGFYYAK 201
>gi|182439278|ref|YP_001826997.1| hypothetical protein SGR_5485 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467794|dbj|BAG22314.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 303
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 62 IQQRDYKRLILSAFEHGDD------MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
I ++ RL+ AF H MHL +NM +L GR +E G ++L+L + V
Sbjct: 126 IADGEWYRLVTGAFLHLPPDASFGVMHLVFNMFALWNIGRAVEGQLGRARYLALYLLSAV 185
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN-VKA 174
S+ +V+ + DTS +G S +F + + + +N A
Sbjct: 186 GGSV-------LVYLLAPDTST-----VGASGAVFGLAAAYWVIHRRLGHDMAAVNRFMA 233
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ W L ++ S++GHL G+L G
Sbjct: 234 GFLVWMVLSALF-----TSWQGHLGGLLTG 258
>gi|436835582|ref|YP_007320798.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384066995|emb|CCH00205.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 207
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
AV Q Y RL+ S F H D HL +NM+S G +E I+
Sbjct: 34 AVAHQGQYYRLVTSGFLHADLSHLLFNMLSFYFFGGTVEAIF 75
>gi|336467427|gb|EGO55591.1| rhomboid protein 2 [Neurospora tetrasperma FGSC 2508]
gi|350287930|gb|EGZ69166.1| rhomboid protein 2 [Neurospora tetrasperma FGSC 2509]
Length = 276
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F H + H N+V+ + E +G S+ +F F ++ ++ +I +I +
Sbjct: 79 FIHLNIFHTILNIVAFTPLLERFEHEHG--TLTSVALFFGPFATIPGLIYVFIERFILHA 136
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
+ + ++ + +L M+ I T + + Y I N+ P +++ L+P++SF
Sbjct: 137 NTPVMGASM-WVFLLLGMEAIRTY-KTNPYFTISTYNIPTWITPLLLVVVTAALLPSSSF 194
Query: 195 KGHLSGILV----GLTYTD--TPIGWGLDYVVDKCQ 224
GHL+G+LV GL Y P W L ++ K
Sbjct: 195 LGHLAGLLVGYGFGLGYLKFLAPPEWALRFIEGKLN 230
>gi|306817452|ref|ZP_07451197.1| rhomboid family membrane protein [Mobiluncus mulieris ATCC 35239]
gi|304649893|gb|EFM47173.1| rhomboid family membrane protein [Mobiluncus mulieris ATCC 35239]
Length = 239
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 69 RLILSAFEHGDDM--HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R + +AF H M HL +N +L + GR LE I G K L + + SL L A
Sbjct: 31 RFLSAAFLHSIPMPFHLGFNCWALWVVGRALEPIMGHTKLLLSFVICALAASLACCLTAL 90
Query: 127 IVF--YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELII 184
+ ++T S GF ++ A++ +L RL ++ IN +
Sbjct: 91 LNLQAWLTFTVGA-SGAVFGFFGIMLAIQRML-RLPYTEMAALIGIN-----------FV 137
Query: 185 IYLLVPNASFKGHLSGILVGLT 206
I ++PN ++ HL G+ GL
Sbjct: 138 IGFVLPNVAWVAHLGGLAAGLA 159
>gi|68061265|ref|XP_672631.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56489857|emb|CAH94479.1| conserved hypothetical protein [Plasmodium berghei]
Length = 239
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 31/180 (17%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGD-DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
D+ + A +I+ ++ R+I SA +GD +++ N+ L L+ ++LEK G + +L
Sbjct: 61 DIALHAKRIIRAFEFYRIITSALFYGDISLYVLTNIYMLYLQSQELEKSVGSSE--TLAF 118
Query: 112 FLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ---IL 168
+L+ T +L+ I YI F + + T + Y + I
Sbjct: 119 YLSQIT-----ILSAICSYIKKP----------FYSTALLKSLLFTNCMLNPYNKSNLIF 163
Query: 169 NINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL---VGLTYTDTPIGWGLDYVVDKCQE 225
IN+ +Y P+ ++I L + FK LSGIL G Y + I Y+++KC +
Sbjct: 164 GINIYNMYLPYLSIVIDILHAQD--FKASLSGILGIISGYIYYISNI-----YLLEKCNK 216
>gi|238487390|ref|XP_002374933.1| rhomboid family protein, putative [Aspergillus flavus NRRL3357]
gi|317143610|ref|XP_001819579.2| rhomboid protein 2 [Aspergillus oryzae RIB40]
gi|220699812|gb|EED56151.1| rhomboid family protein, putative [Aspergillus flavus NRRL3357]
Length = 270
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 10/159 (6%)
Query: 49 WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLS 108
WS + A I RL F H H + N+V+L + E +G +
Sbjct: 47 WSVVQWGALAPDEIGFGSMYRLNTYPFIHNGFFHAFLNLVALTPLVERFEAEHG--TLTA 104
Query: 109 LVIFL---TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQ 165
+ +FL + F + Y+L+ F + +T+ L F +L + I T + Y
Sbjct: 105 VALFLGPLSTFPAGLYLLVEK--FLLHRNTAVLGASVWVF--LLLGTEAIKT-FKSHPYF 159
Query: 166 QILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ N + +P F I++ +L+ N SF GHL IL+G
Sbjct: 160 SLGNYKIPTWTSPLFACIVVSILMSNTSFLGHLCAILIG 198
>gi|336477072|ref|YP_004616213.1| rhomboid family protein [Methanosalsum zhilinae DSM 4017]
gi|335930453|gb|AEH60994.1| Rhomboid family protein [Methanosalsum zhilinae DSM 4017]
Length = 276
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
+I F H HL++NM+ L GR+LE+ G FL + + +L Y L
Sbjct: 128 IITYMFLHAGVAHLFFNMLVLFFFGRELERRVGNTMFLKVFFISGIVAALGYSL------ 181
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
TS++S +G S ++ + + L PD I +K YA I +LL+
Sbjct: 182 -----TSDIS--MVGASGAIYGVFAAVALLAPDLRIYIYFFPMKIKYALVIFAAIDFLLI 234
Query: 190 PNASF---KGHLSGILVGL 205
+ HL G+ GL
Sbjct: 235 SAPTMIAHSAHLMGLFTGL 253
>gi|332663565|ref|YP_004446353.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332332379|gb|AEE49480.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 281
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 45 FRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWG 104
F P D+++ +D+KRL+ SAF H + MHL +NM+SL LE G
Sbjct: 23 FTNPQVFAAYKFEVDSILFHKDFKRLVSSAFLHVNWMHLIFNMLSLYAFSNLLENQLGGL 82
Query: 105 KFLSL 109
F+ L
Sbjct: 83 NFVLL 87
>gi|72382324|ref|YP_291679.1| rhomboid family membrane serine protease [Prochlorococcus marinus
str. NATL2A]
gi|72002174|gb|AAZ57976.1| membrane serine protease of rhomboid family [Prochlorococcus
marinus str. NATL2A]
Length = 195
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLI-----LKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
R+I S F HGD HL N+ +I LK L+ Y + F++L++ + F I
Sbjct: 50 RMITSHFFHGDLNHLLANVSGIIVARYFLKSLGLKSDYFFLAFVALIMPIQAF-----IC 104
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF--- 180
+ + N S AIGFS VLF + + + L+I+ + P
Sbjct: 105 WCLDILVLGNPMS----LAIGFSGVLFGIDAFILMTTIYGKNKFLSISCELKKDPGLLKS 160
Query: 181 -----ELIIIYLLVPNASFKGHLSGILVGL 205
+ II+ +P S GH+SG+L G
Sbjct: 161 ISLLTGVGIIWSFLPGISLFGHMSGLLAGF 190
>gi|406039674|ref|ZP_11047029.1| hypothetical protein AursD1_07617 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 205
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
+ ++ I +Q+ Y R I F H D HL +NM++L G +E Y +F
Sbjct: 28 NIMNRLIFWPPAMQRGQYDRFITHGFVHADGTHLLFNMITLFFFGSVIESFY--RQFFYD 85
Query: 110 VIFLTVFTS--LYYILLAYIVFYITNDTSELSHCAIG-FSAVLFA 151
+ F+ + ++ IL +Y+ NDT+ S A G SAVLFA
Sbjct: 86 LGFVLFYLGGLIFAILPSYLKH--KNDTNWASLGASGAVSAVLFA 128
>gi|404260618|ref|ZP_10963899.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
gi|403400926|dbj|GAC02309.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
Length = 241
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAV---IQQRDYKRLILSAFEHGDDMHLYYNMVS 89
L+FL V F P + + S D + + +Y RL+ S F H MH+ NM+S
Sbjct: 26 LIFLLCAVQAGSFGDPGAA-TIFSSGDLLKSDVAAGEYWRLLTSGFLHFSVMHVAVNMLS 84
Query: 90 LILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVL 149
L + GR LE G ++L++ + + S +L ND + + + ++
Sbjct: 85 LYILGRDLELALGMSRYLAVYLIALLGGSAAVMLF-------ENDRALTAGASGAIYGLM 137
Query: 150 FAMKTIL--TRLQPDAYQQILNINV 172
AM I+ R P I+ NV
Sbjct: 138 GAMLVIILKARASPVPVLLIIGFNV 162
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 29/163 (17%)
Query: 51 TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLV 110
T ++ + A + Y RL+ SAF H MHL +NM +L + G LE+ G ++ +L
Sbjct: 52 TEELTLWAPGIAFYDQYYRLVTSAFLHYGVMHLLFNMWALYVVGPPLEQWLGRLRYGALY 111
Query: 111 IFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI 170
++L +L Y++ I T+ S G +F + + LN+
Sbjct: 112 ----ALSALGGSVLVYLLTPINTPTAGASGAIFGLFGAIFVVA------------RKLNL 155
Query: 171 NVKAIYAPWFELIIIYLLVPNA---------SFKGHLSGILVG 204
+V+ I A ++II L+ A S++GH+ G++ G
Sbjct: 156 DVRMIAA----VVIINLVFTFAGPALGTGAISWQGHIGGLITG 194
>gi|365987714|ref|XP_003670688.1| hypothetical protein NDAI_0F01260 [Naumovozyma dairenensis CBS 421]
gi|343769459|emb|CCD25445.1| hypothetical protein NDAI_0F01260 [Naumovozyma dairenensis CBS 421]
Length = 277
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 27 PPATL--GL-VFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PPA L GL VFL + L+ F + ++ D++ + + +L H +HL
Sbjct: 14 PPAALTTGLTVFLAIIYTLSWFPRTNLNESWSLNTDSLFHLKTFSKLSTYPLIHLSLLHL 73
Query: 84 YYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH 140
N+ ++ + E +G G L+L L +FT ++Y I++ +
Sbjct: 74 LCNVFAIFVPLTIFETNHGTIYTGVILNL---LAIFTGVFYCFAGTILYPNVSIAGASGW 130
Query: 141 CAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
C + FA++ R + + + I +N+ + P L +I LVP +SF GH G
Sbjct: 131 CFTFWG--YFALQESRIRPRYENFAHISGLNIPTVAVPIVMLFVIAFLVPGSSFPGHALG 188
Query: 201 ILVGLTYTDTPIGWGLDYV 219
++ G +GW ++V
Sbjct: 189 LMFGYL-----MGWKENWV 202
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 22/150 (14%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL+ + F H MH+ +NM+SL G LE +G +FL+L + + S
Sbjct: 134 VAEGEWYRLLTAVFLHQAPMHIIFNMLSLWWLGPPLEAAFGRVRFLALYLLSGLGGSALS 193
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAM---KTILTRLQPDAYQQILNINVKAIYAP 178
LLA N S +G S +F + IL R LN +++ +
Sbjct: 194 YLLAA-----QNQPS------LGASGAIFGLLGATVILMRR--------LNYDMRPVLIL 234
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGLTYT 208
++ P+ +++ H+ G+++G T
Sbjct: 235 LALNLVFTFAWPDIAWQAHVGGLVMGAAVT 264
>gi|73667754|ref|YP_303769.1| rhomboid protein [Methanosarcina barkeri str. Fusaro]
gi|72394916|gb|AAZ69189.1| rhomboid protein [Methanosarcina barkeri str. Fusaro]
Length = 207
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
LI F H +HL +NM+ L G LE+ G + L++ + +++ Y L +F
Sbjct: 53 LITYIFLHNGLVHLLFNMLVLYFFGTALERRIGNRQLLAIFFTAGILSAIGYTFLTQPIF 112
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
I+ +G S ++ + LT L+PD + + +K +A + +L++
Sbjct: 113 NISPGP------MVGASGAIYGVFAALTILEPDIRVYVYFVPMKLKHALVLFALFDFLMI 166
Query: 190 PNA---SFKGHLSGILVGL 205
++ + HLSG+ VGL
Sbjct: 167 NSSDMIAHTAHLSGLFVGL 185
>gi|343928757|ref|ZP_08768202.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
gi|343761506|dbj|GAA15128.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
Length = 238
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAV---IQQRDYKRLILSAFEHGDDMHLYYNMVS 89
L+FL V F P + + S D + + +Y RL+ S F H MH+ NM+S
Sbjct: 23 LIFLLCAVQAGSFGDPGAA-TIFSSGDLLKSDVAAGEYWRLLTSGFLHFSVMHVAVNMLS 81
Query: 90 LILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVL 149
L + GR LE G ++L++ + + S +L ND + + + ++
Sbjct: 82 LYILGRDLELALGMSRYLAVYLIALLGGSAAVMLF-------ENDRALTAGASGAIYGLM 134
Query: 150 FAMKTIL--TRLQPDAYQQILNINV 172
AM ++ R+ P I+ NV
Sbjct: 135 GAMLVVILKARVSPVPVLLIIGFNV 159
>gi|319952205|ref|YP_004163472.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319420865|gb|ADV47974.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 248
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 65 RDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
R + ++ S F HG HLY N V L++ L Y + K VI + S
Sbjct: 49 RGLRGILFSPFIHGSAQHLYNNTVPLVVLTTSL--FYFYRKNAYQVIIFGILVS------ 100
Query: 125 AYIVFYITNDTSELSHCAIGFS-AVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
++ + I ++ + + + A K + T+ Y +++ +++ ++ L
Sbjct: 101 GFLTWLIGRESYHIGASGLIYVLASFIFFKGVFTK-----YYRLVALSLMVVFVYGSMLW 155
Query: 184 IIYLLVPNASFKGHLSGILVGLT---YTDTPIGWGLDYVVDKCQEMINGEEQE 233
I+ + + S++GHLSG LVG Y TPI Y D +E N EE E
Sbjct: 156 YIFPIQDDISWEGHLSGFLVGFVFAYYFQTPIPETKKY--DWEREGYNEEEDE 206
>gi|326494080|dbj|BAJ85502.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523653|dbj|BAJ92997.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 314
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+++ L+L G+ LE ++G + V + TS+ + A V+Y+T S L GF
Sbjct: 81 SIIGLLLFGKLLEPLWGTKELSKFVFVVNFSTSMCVFITAIAVYYVTQQESYLYTPLSGF 140
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
VL + + +L PD Q LN+ V I W +I + V
Sbjct: 141 YGVLSGLLVGIKQLMPD---QELNLFVLKIKGKWIPSLIALISV 181
>gi|309811347|ref|ZP_07705134.1| peptidase, S54 family [Dermacoccus sp. Ellin185]
gi|308434654|gb|EFP58499.1| peptidase, S54 family [Dermacoccus sp. Ellin185]
Length = 311
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 2 TRPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAV 61
T P R LG+ A P T+G++ + +V+L DV S AV
Sbjct: 71 TLPTRSSLGMTT------GAAAQGRPVVTIGIIAICCLVWLGQLASDALYRDV--SFVAV 122
Query: 62 IQQRDYKRLILSAFEH--GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
+ + R + S F H G MHL +NM++L G+ LE + G +F +L + + S+
Sbjct: 123 FARDEPWRYLTSGFAHDTGTPMHLLFNMMALYFMGQYLEPLIGRVRFGALYLLSVLGGSV 182
Query: 120 YYILL 124
Y ++
Sbjct: 183 VYQIM 187
>gi|409392616|ref|ZP_11244170.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
gi|403197559|dbj|GAB87404.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
Length = 241
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAV---IQQRDYKRLILSAFEHGDDMHLYYNMVS 89
L+FL V F P + + S D + + +Y RL+ S F H MH+ NM+S
Sbjct: 26 LIFLLCAVQAGSFGDPGAA-AIFSSGDLLKSDVAAGEYWRLLTSGFLHFSVMHVAVNMLS 84
Query: 90 LILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVL 149
L + GR LE G +++++ + + S +L ND + + + ++
Sbjct: 85 LYILGRDLELALGMSRYVAVYLIALLGGSAAVMLF-------ENDRALTAGASGAIYGLM 137
Query: 150 FAMKTIL--TRLQPDAYQQILNINV 172
AM I+ R+ P I+ NV
Sbjct: 138 GAMLVIILKARVSPVPVLLIIGFNV 162
>gi|392390248|ref|YP_006426851.1| hypothetical protein Ornrh_0861 [Ornithobacterium rhinotracheale
DSM 15997]
gi|390521326|gb|AFL97057.1| putative membrane protein [Ornithobacterium rhinotracheale DSM
15997]
Length = 187
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSL 90
A++ Q+ Y R+ S F H D MHL++NM +L
Sbjct: 35 SAILDQKQYDRIFTSGFIHADGMHLFFNMFAL 66
>gi|167748326|ref|ZP_02420453.1| hypothetical protein ANACAC_03070 [Anaerostipes caccae DSM 14662]
gi|167652318|gb|EDR96447.1| peptidase, S54 family [Anaerostipes caccae DSM 14662]
Length = 280
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 42 LNIFRKPWSTLDV------CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGR 95
+NIF WS ++ +Q + RL+ S F H HL+ NM+ +L G
Sbjct: 106 INIFMYLWSAASTEILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNNMIVFVLIGS 165
Query: 96 QLEKIYGWGKFLSLVIFL----TVFTSLYYILLAYIV 128
+LE I+G ++++L + ++ +++YY+ + +V
Sbjct: 166 RLEPIFGRARYVALYMGAGLCGSIVSAVYYMNMGEMV 202
>gi|291438500|ref|ZP_06577890.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341395|gb|EFE68351.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 296
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 27/150 (18%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++ RL S F H H+ +NM+ L G LE+ G ++L+L + + S
Sbjct: 127 VADGEWYRLFTSMFTHEAIWHIAFNMLGLWWLGGPLEQALGRARYLALYLISGLAGSALT 186
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQ--QILNINVKAI 175
LLA + T+ L G S +F AM ++ RL D +L IN+
Sbjct: 187 YLLA------SGTTATL-----GASGAIFGLFGAMAVLMRRLDYDMRPIIALLVINLIFT 235
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVGL 205
++P F N +++ H+ G++ G+
Sbjct: 236 FSPGF----------NIAWQAHIGGLVAGV 255
>gi|157273306|gb|ABV27205.1| integral membrane protein Rhomboid family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 386
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
+I Q + RL++ F H +HL NM +L + G QLE +YG +F ++
Sbjct: 71 LIAQGELWRLVVPMFLHIGVIHLVANMYALWVVGPQLESLYGSARF-----------TIL 119
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI--YAP 178
Y+L F + + G S LF M L +I + V+A
Sbjct: 120 YVLSGIGGFVASYFFAHPESIGAGASGALFGMFGALLVFVYKYRSEIPPL-VRATMRRGV 178
Query: 179 WFEL---IIIYLLVPNASFKGHLSGILVGL 205
W L +II +P S GH+ G+L G+
Sbjct: 179 WLTLALNLIITFSIPFISRSGHVGGLLTGI 208
>gi|317472135|ref|ZP_07931467.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
gi|316900539|gb|EFV22521.1| rhomboid family protein [Anaerostipes sp. 3_2_56FAA]
Length = 309
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 42 LNIFRKPWSTLDV------CISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGR 95
+NIF WS ++ +Q + RL+ S F H HL+ NM+ +L G
Sbjct: 135 INIFMYLWSAASTEILNWGALTWMHAFKQGELYRLVTSNFLHNGFDHLFNNMIVFVLIGS 194
Query: 96 QLEKIYGWGKFLSLVIFL----TVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFA 151
+LE I+G ++++L + ++ +++YY+ + +V ++G S +F
Sbjct: 195 RLEPIFGRARYVALYMGAGLCGSIVSAVYYMNMGEMV------------ASVGASGAIFG 242
Query: 152 M 152
+
Sbjct: 243 L 243
>gi|411007398|ref|ZP_11383727.1| hypothetical protein SgloC_31738 [Streptomyces globisporus C-1027]
Length = 302
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 29/168 (17%)
Query: 62 IQQRDYKRLILSAFEHGDD------MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
I ++ RL+ AF H MHL +NM +L GR +E G ++L+L + V
Sbjct: 126 IADGEWYRLVTGAFLHLPPDASFGVMHLLFNMFALWNIGRAVEGQLGRARYLALYLLSAV 185
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN-VKA 174
S+ +V+ + DTS +G S +F + + + +N A
Sbjct: 186 GGSV-------LVYLLAPDTST-----VGASGAVFGLAAAYWVIHRRLGHDMAAVNRFMA 233
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDK 222
+ W L ++ S++GHL G+L G T +GL Y +
Sbjct: 234 GFLIWMVLSALF-----TSWQGHLGGLLTGALVT-----YGLAYAPAR 271
>gi|285017909|ref|YP_003375620.1| hypothetical protein XALc_1118 [Xanthomonas albilineans GPE PC73]
gi|283473127|emb|CBA15633.1| hypothetical protein XALC_1118 [Xanthomonas albilineans GPE PC73]
Length = 211
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 25 TIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
+IPP L L+ L +V F + + A+ + + Y RL+ F H D HL
Sbjct: 3 SIPPINLILIVLTVLVSWGAFNNRRLLDRLILWPPAIDRHKQYDRLVTYGFIHADFPHLL 62
Query: 85 YNMVSLILKGRQLE 98
+NMV+L G +E
Sbjct: 63 FNMVTLYFFGGPIE 76
>gi|336272910|ref|XP_003351210.1| hypothetical protein SMAC_03513 [Sordaria macrospora k-hell]
gi|380092730|emb|CCC09483.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 291
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F H + H N+++ + E+ +G ++ +F F ++ ++ +I +I +
Sbjct: 79 FIHLNIFHAVLNIIAFTPLLERFEQEHG--TLTAVALFFGPFATIPGLIYVFIERFILHA 136
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
+ + ++ + +L M+ I T + + Y I N+ P +++ L+P++SF
Sbjct: 137 NTPVMGASM-WVFLLLGMEAIRT-YKTNPYFTISTYNIPTWITPLLLVVVTAALLPSSSF 194
Query: 195 KGHLSGILV----GLTYTD--TPIGWGLDYVVDKCQ 224
GHL+G+LV GL Y P W L ++ K
Sbjct: 195 LGHLAGLLVGYGFGLGYLKFLAPPEWALRFIEGKLN 230
>gi|297582530|ref|YP_003698310.1| rhomboid family protein [Bacillus selenitireducens MLS10]
gi|297140987|gb|ADH97744.1| Rhomboid family protein [Bacillus selenitireducens MLS10]
Length = 199
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 28 PATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
P G++ L ++ +L ++ P + + ++ + + Q+ LI F G MHL N
Sbjct: 12 PGMTGILALYALFFLILYSDPATGDALLVNPETMFQEP--WTLITVIFATGSVMHLLLNG 69
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSA 147
+I+ G +LEK G G + L + + + S+ L A + + + S AIG
Sbjct: 70 FLVIMFGGKLEKTIGTGTSVVLFLIMGLMGSVALFLYAPFMTWTGEPAALASVAAIG--- 126
Query: 148 VLFAMKTILTRLQPDA 163
M +I T L DA
Sbjct: 127 ----MASIYTGLVKDA 138
>gi|50084251|ref|YP_045761.1| hypothetical protein ACIAD1051 [Acinetobacter sp. ADP1]
gi|49530227|emb|CAG67939.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter sp. ADP1]
Length = 207
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS--L 119
+Q+ Y R I F H D HL +NM++L G +E Y +F + F+ + +
Sbjct: 42 MQRGQYDRFITHGFIHADGTHLLFNMITLFFFGSIIESFY--RQFFYDLGFVLFYLGGLI 99
Query: 120 YYILLAYIVFYITNDTSELSHCAIG-FSAVLFA 151
+ IL +Y F NDT S A G SAVLFA
Sbjct: 100 FAILPSY--FQHKNDTHWASLGASGAVSAVLFA 130
>gi|376261459|ref|YP_005148179.1| hypothetical protein [Clostridium sp. BNL1100]
gi|373945453|gb|AEY66374.1| putative membrane protein [Clostridium sp. BNL1100]
Length = 519
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
+ +I + Y R F H D +HL N S+ + G Q+EKI+G G+FL++
Sbjct: 222 NNLIMEGQYWRFFAPMFLHADIVHLAVNCYSIYIIGSQVEKIFGRGRFLAI 272
>gi|325927371|ref|ZP_08188621.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|325542259|gb|EGD13751.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
Length = 253
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + L +L+A+
Sbjct: 86 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAW 143
>gi|421098295|ref|ZP_15558966.1| peptidase, S54 family [Leptospira borgpetersenii str. 200901122]
gi|410798563|gb|EKS00652.1| peptidase, S54 family [Leptospira borgpetersenii str. 200901122]
Length = 197
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RNKNYYTLFTSGFIHADWMHLIFNMISFYSFGKNLEMTVGPIKFL 80
>gi|189501441|ref|YP_001960911.1| rhomboid family protein [Chlorobium phaeobacteroides BS1]
gi|189496882|gb|ACE05430.1| Rhomboid family protein [Chlorobium phaeobacteroides BS1]
Length = 273
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 21/166 (12%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+LI F HG H+ +NM +L L G ++E +G +F + + +L +L
Sbjct: 63 QLITYMFMHGGFAHILFNMFALWLFGAEIENYWGTKEFTTYYFVCGIGAALLNLL----- 117
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYL 187
T+ + +G S +F + + PD Y + + VKA Y I L
Sbjct: 118 -----TTAGSQYPTVGASGAVFGILLAFGMMFPDRYIYLYFLFPVKAKYFVAGYAGIELL 172
Query: 188 LVPNASFKG---------HLSGILVGLTYTDT-PIGWGLDYVVDKC 223
+ N S G HL G+LVGL Y + GW VD+
Sbjct: 173 MGINNSTMGSGSNIAHFAHLGGMLVGLVYIKSRQQGWSFSEWVDRT 218
>gi|456864209|gb|EMF82623.1| peptidase, S54 family [Leptospira weilii serovar Topaz str. LT2116]
Length = 197
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RNKNYYTLLTSGFIHADWMHLIFNMISFYSFGKNLEITVGPIKFL 80
>gi|366053016|ref|ZP_09450738.1| membrane-associated serine protease [Lactobacillus suebicus KCTC
3549]
Length = 223
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 35/205 (17%)
Query: 30 TLGLVFLQSMVYLNIFRKPWST-----LDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
T +V +Q +V++ + ST ++ +IQ+ + RLI F H MHL
Sbjct: 13 TQAIVLIQVIVFILMTVAGGSTNTQILIEFGAKVGTLIQEGQWWRLITPVFLHIGLMHLV 72
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIG 144
N V++ G Q+E ++G +FLS + F++ T LA VF + ++ S G
Sbjct: 73 VNSVTVYYIGTQIENMFGHARFLS-IYFVSALTG----NLASFVFLPNSLSAGASTAIFG 127
Query: 145 -FSAVLFAMKTI----LTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLS 199
F A L ++ RL + + IN ++ L +P GHL
Sbjct: 128 LFGAFLMLGESFHHNPYIRLLSRQFLTFVAIN-----------LVFDLFMPGIDIYGHLG 176
Query: 200 GILVGLTYTDTPIGWGLDYVVDKCQ 224
G LVG G+ + YVV Q
Sbjct: 177 G-LVG--------GFLMGYVVGTPQ 192
>gi|343496237|ref|ZP_08734340.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821484|gb|EGU56258.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 360
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 49 WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLS 108
W + ++ ++ R+ L+ + F HGD MHL NM L + G +E G K+L+
Sbjct: 177 WVIEHLAMTPADILAGRELWTLVTATFLHGDLMHLAGNMYFLYVVGDNIEDAVGHKKYLA 236
Query: 109 LVIFLTVFTSL 119
L F + SL
Sbjct: 237 LYFFCGIAASL 247
>gi|416242727|ref|ZP_11633696.1| rhomboid family protein [Moraxella catarrhalis BC7]
gi|326570623|gb|EGE20659.1| rhomboid family protein [Moraxella catarrhalis BC7]
Length = 201
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
L+ I + + Y RL+ F H + MHL +NM +L GR +E+ Y
Sbjct: 25 LERLIFYPPAVNKGQYDRLLTHGFIHANGMHLLFNMFTLYFFGRVIERFY 74
>gi|294777625|ref|ZP_06743076.1| peptidase, S54 (rhomboid) family protein [Bacteroides vulgatus
PC510]
gi|294448693|gb|EFG17242.1| peptidase, S54 (rhomboid) family protein [Bacteroides vulgatus
PC510]
Length = 225
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 68 KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+LI F HG H+++NM +L + GR LE+++G +FLS + + L L+ YI
Sbjct: 49 AQLITYMFMHGGFQHIFFNMFALWMFGRTLEQVWGPKRFLSYYMVCGIGAGLVQELVQYI 108
>gi|21243475|ref|NP_643057.1| hypothetical protein XAC2748 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109033|gb|AAM37593.1| integral membrane protein [Xanthomonas axonopodis pv. citri str.
306]
Length = 253
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + L +L+A+
Sbjct: 86 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAW 143
>gi|150003566|ref|YP_001298310.1| transmembrane rhomboid family protein [Bacteroides vulgatus ATCC
8482]
gi|345517236|ref|ZP_08796714.1| hypothetical protein BSFG_00455 [Bacteroides sp. 4_3_47FAA]
gi|423313295|ref|ZP_17291231.1| hypothetical protein HMPREF1058_01843 [Bacteroides vulgatus
CL09T03C04]
gi|149931990|gb|ABR38688.1| putative transmembrane rhomboid family protein [Bacteroides
vulgatus ATCC 8482]
gi|254833999|gb|EET14308.1| hypothetical protein BSFG_00455 [Bacteroides sp. 4_3_47FAA]
gi|392685645|gb|EIY78960.1| hypothetical protein HMPREF1058_01843 [Bacteroides vulgatus
CL09T03C04]
Length = 225
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 68 KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+LI F HG H+++NM +L + GR LE+++G +FLS + + L L+ YI
Sbjct: 49 AQLITYMFMHGGFQHIFFNMFALWMFGRTLEQVWGPKRFLSYYMVCGIGAGLVQELVQYI 108
>gi|398330785|ref|ZP_10515490.1| intramembrane protease [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 197
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NM+S G+ LE G KFL
Sbjct: 36 RNKNYYTLLTSGFIHADWMHLIFNMISFYSFGKNLEITVGPIKFL 80
>gi|296113687|ref|YP_003627625.1| rhomboid family protein [Moraxella catarrhalis RH4]
gi|416215836|ref|ZP_11623349.1| rhomboid family protein [Moraxella catarrhalis 7169]
gi|416222800|ref|ZP_11626253.1| rhomboid family protein [Moraxella catarrhalis 103P14B1]
gi|416229279|ref|ZP_11627999.1| rhomboid family protein [Moraxella catarrhalis 46P47B1]
gi|416237663|ref|ZP_11631105.1| rhomboid family protein [Moraxella catarrhalis BC1]
gi|416245992|ref|ZP_11634884.1| rhomboid family protein [Moraxella catarrhalis BC8]
gi|416251452|ref|ZP_11637720.1| rhomboid family protein [Moraxella catarrhalis CO72]
gi|416256012|ref|ZP_11639489.1| rhomboid family protein [Moraxella catarrhalis O35E]
gi|295921381|gb|ADG61732.1| rhomboid family protein [Moraxella catarrhalis BBH18]
gi|326562429|gb|EGE12748.1| rhomboid family protein [Moraxella catarrhalis 7169]
gi|326562798|gb|EGE13093.1| rhomboid family protein [Moraxella catarrhalis 46P47B1]
gi|326563482|gb|EGE13745.1| rhomboid family protein [Moraxella catarrhalis 103P14B1]
gi|326569137|gb|EGE19199.1| rhomboid family protein [Moraxella catarrhalis BC1]
gi|326571330|gb|EGE21347.1| rhomboid family protein [Moraxella catarrhalis BC8]
gi|326572975|gb|EGE22954.1| rhomboid family protein [Moraxella catarrhalis CO72]
gi|326574787|gb|EGE24721.1| rhomboid family protein [Moraxella catarrhalis O35E]
Length = 201
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
L+ I + + Y RL+ F H + MHL +NM +L GR +E+ Y
Sbjct: 25 LERLIFYPPAVNKGQYDRLLTHGFIHANGMHLLFNMFTLYFFGRVIERFY 74
>gi|319640216|ref|ZP_07994942.1| transmembrane rhomboid family protein [Bacteroides sp. 3_1_40A]
gi|317388203|gb|EFV69056.1| transmembrane rhomboid family protein [Bacteroides sp. 3_1_40A]
Length = 233
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 68 KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+LI F HG H+++NM +L + GR LE+++G +FLS + + L L+ YI
Sbjct: 49 AQLITYMFMHGGFQHIFFNMFALWMFGRTLEQVWGPKRFLSYYMVCGIGAGLVQELVQYI 108
>gi|384419943|ref|YP_005629303.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353462856|gb|AEQ97135.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 202
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW--GKFLSLVIFLTVFT 117
AV + + Y RL+ F H D HL +NMV+L GR +E + G L+ +F
Sbjct: 33 AVDKHKQYDRLVTYGFIHADLGHLVFNMVTLFFFGRVIESVMAQLTGSVLTYPLFY---- 88
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
L ++++ + Y+ N + ++ ++G S + A+ LQP +L I AI
Sbjct: 89 -LAALVVSILPSYLKNQKNP-NYLSLGASGAVSAVLFAFILLQPWTIILVLFIPAPAI 144
>gi|88813665|ref|ZP_01128894.1| Rhomboid-like protein [Nitrococcus mobilis Nb-231]
gi|88789083|gb|EAR20221.1| Rhomboid-like protein [Nitrococcus mobilis Nb-231]
Length = 225
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYIT 132
S F H MHL+ N+ L L G +E G ++L +F V + I AY Y T
Sbjct: 75 SMFLHKSWMHLFGNLFYLWLFGNSVEDSMGHRRYL---LFYLVVGVVAVIAQAYPEPYST 131
Query: 133 N---DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
S +G +LF +L + + Q++ + + + WF L ++ ++
Sbjct: 132 APMIGASGAISGVLGAYMLLFPRANVLALIPLGRWTQLIRVPAALVLSLWFVLQLLLSVM 191
Query: 190 ---PNASFKGHLSGILVGLTYTD 209
P F+ H+ G + GL T
Sbjct: 192 GTDPGTGFRAHIGGFIAGLVLTP 214
>gi|294625501|ref|ZP_06704129.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294664007|ref|ZP_06729420.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292600170|gb|EFF44279.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292606221|gb|EFF49459.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 253
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + L +L+A+
Sbjct: 86 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAW 143
>gi|325000791|ref|ZP_08121903.1| serine peptidase [Pseudonocardia sp. P1]
Length = 254
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 28/146 (19%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL---A 125
RL+ + F H +HL +NM +L + GR++E + G + FT++Y + L +
Sbjct: 92 RLVTAGFLHIGPLHLAFNMFALWVIGREVEAVLGRAR----------FTAVYGVSLLGGS 141
Query: 126 YIVFYITN---DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
V ++N T+ S G LF + L A Q I I +
Sbjct: 142 AAVMLLSNPLGPTAGASGAVFGLMGALFVLLRRLRL---PAGQVIGVIAIN--------- 189
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYT 208
++I + S++GHL G++ G T
Sbjct: 190 VVISFTLQGISWQGHLGGLVFGAAVT 215
>gi|325916919|ref|ZP_08179164.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
gi|325536865|gb|EGD08616.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
Length = 255
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + L +L+A+
Sbjct: 86 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAW 143
>gi|445383054|ref|ZP_21427373.1| hypothetical protein IQ5_08616 [Streptococcus thermophilus MTCC
5460]
gi|445395945|ref|ZP_21429103.1| hypothetical protein IQ7_08672 [Streptococcus thermophilus MTCC
5461]
gi|444748296|gb|ELW73272.1| hypothetical protein IQ7_08672 [Streptococcus thermophilus MTCC
5461]
gi|444748403|gb|ELW73372.1| hypothetical protein IQ5_08616 [Streptococcus thermophilus MTCC
5460]
Length = 224
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI F H H +NM++L GR E+I+G +FL L + V + A+ +
Sbjct: 60 RLITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLSGVMGN------AFTL 113
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ N A G S LF + + L ++ +LN + A +I L
Sbjct: 114 LFTPNV------IAAGASTSLFGLFAAIVILGYYSHSPLLNQLSRNYLALIVINLIFNLF 167
Query: 189 VPNASFKGHLSGILVG 204
P+ GHL G++ G
Sbjct: 168 TPSVGITGHLGGLVGG 183
>gi|296111906|ref|YP_003622288.1| small hydrophobic molecule transporter protein [Leuconostoc kimchii
IMSNU 11154]
gi|339490819|ref|YP_004705324.1| small hydrophobic molecule transporter protein [Leuconostoc sp. C2]
gi|295833438|gb|ADG41319.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc kimchii IMSNU 11154]
gi|338852491|gb|AEJ30701.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc sp. C2]
Length = 229
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
DY RL+ F H MH++ NM++L G +E +G KFL L +F V +++ L
Sbjct: 57 HHDYWRLVTPLFLHAGFMHVFTNMLTLWFIGPLVESSFGSRKFLILYLFSGVIGNIFSYL 116
Query: 124 LA 125
A
Sbjct: 117 FA 118
>gi|103486476|ref|YP_616037.1| rhomboid-like protein [Sphingopyxis alaskensis RB2256]
gi|98976553|gb|ABF52704.1| Rhomboid-like protein [Sphingopyxis alaskensis RB2256]
Length = 211
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYIT 132
SAF HG +H+ +NMV L+ GRQLE G K +++++ + + Y+
Sbjct: 64 SAFLHGGVLHIAFNMVVLLFIGRQLEAPLG-TKAMAVLLLAGAYGG-------ALAQYLA 115
Query: 133 NDTSELSHCAI--GFSAVLFAMKTILTRLQPDAYQQILNINVKAIY 176
+ S + SA++ I +R Q A I + V+AI+
Sbjct: 116 DPASAVPMIGASGAISALIAVFALIFSRTQAPAIGPIPSHWVRAIW 161
>gi|390945303|ref|YP_006409064.1| hypothetical protein Belba_3827 [Belliella baltica DSM 15883]
gi|390418731|gb|AFL86309.1| putative membrane protein [Belliella baltica DSM 15883]
Length = 210
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 45 FRKPWSTLDVCISADAVIQQRD-YKRLILSAFEHGDDMHLYYNMVSLILKGRQLEK 99
F+ P S LD + +I+ ++ Y R +LS F H D MHL +NM + G +E+
Sbjct: 22 FKNP-SILDRWMFTPYLIKNKNQYDRFVLSGFIHKDSMHLLFNMFTFYFFGGAVEQ 76
>gi|345866912|ref|ZP_08818933.1| rhomboid family protein [Bizionia argentinensis JUB59]
gi|344048832|gb|EGV44435.1| rhomboid family protein [Bizionia argentinensis JUB59]
Length = 250
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
++I F HG MH+++NM +L + G +E+ +G KFL I + ++ I Y
Sbjct: 49 QIITHMFMHGGFMHIFFNMFALFMFGTAVEQRFGAKKFLFFYISSGLGAAICMIGYYYFT 108
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI 170
FY DT L+ + +L +T+ + + +Q+I+ +
Sbjct: 109 FYSGLDT--LTEAGANKAQIL---QTLNSGMYNTGWQEIMGV 145
>gi|416157627|ref|ZP_11605249.1| rhomboid family protein [Moraxella catarrhalis 101P30B1]
gi|416236217|ref|ZP_11630556.1| rhomboid family protein [Moraxella catarrhalis 12P80B1]
gi|421780491|ref|ZP_16216979.1| rhomboid family protein [Moraxella catarrhalis RH4]
gi|326563202|gb|EGE13470.1| rhomboid family protein [Moraxella catarrhalis 12P80B1]
gi|326573790|gb|EGE23747.1| rhomboid family protein [Moraxella catarrhalis 101P30B1]
gi|407812179|gb|EKF82965.1| rhomboid family protein [Moraxella catarrhalis RH4]
Length = 206
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
L+ I + + Y RL+ F H + MHL +NM +L GR +E+ Y
Sbjct: 30 LERLIFYPPAVNKGQYDRLLTHGFIHANGMHLLFNMFTLYFFGRVIERFY 79
>gi|85093939|ref|XP_959792.1| rhomboid protein 2 [Neurospora crassa OR74A]
gi|74615719|sp|Q7S4V5.1|RBD2_NEUCR RecName: Full=Rhomboid protein 2
gi|28921246|gb|EAA30556.1| rhomboid protein 2 [Neurospora crassa OR74A]
Length = 276
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F H + H N+V+ + E +G S+ +F F ++ ++ ++ +I +
Sbjct: 79 FIHLNIFHTILNIVAFTPLLERFEHEHG--TLTSVALFFGPFATIPGLIYVFVERFILHA 136
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
+ + ++ + +L M+ I T + + Y I N+ P +++ L+P++SF
Sbjct: 137 NTPVMGASM-WVFLLLGMEAIRTY-KTNPYFTISTYNIPTWITPLLLVVVTAALLPSSSF 194
Query: 195 KGHLSGILV----GLTYTD--TPIGWGLDYVVDKCQ 224
GHL+G+LV GL Y P W L ++ K
Sbjct: 195 LGHLAGLLVGYGFGLGYLKFLAPPEWALRFIEGKLN 230
>gi|452974258|gb|EME74079.1| transmembrane protein YdcA [Bacillus sonorensis L12]
Length = 199
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 28 PATLGLVFLQSMVYLNIFRKP------WSTLDVCISADAVIQQRDYKRLILSAFEHGDDM 81
PAT ++ LQ +++ +F P WS D+ I + I + ++ RL+ F H
Sbjct: 16 PATAAILALQLAIWV-LFLIPLPAVQMWS--DLTIGFNWGIAEGEWWRLVTPVFIHAGFS 72
Query: 82 HLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
HL +N +SL L LE++ G +FL++ I
Sbjct: 73 HLLFNSMSLFLFAPALERMMGKLRFLAVYI 102
>gi|21242203|ref|NP_641785.1| hypothetical protein XAC1451 [Xanthomonas axonopodis pv. citri str.
306]
gi|21107623|gb|AAM36321.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 224
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW--GKFLSLVIFLTVFT 117
AV + + Y RL+ F H D HL +NM++L GR +E + G L+ +F
Sbjct: 55 AVDKHKQYDRLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFY---- 110
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
L ++++ + Y+ N + ++ ++G S + A+ LQP +L I AI
Sbjct: 111 -LAALVVSILPSYLKNQKNP-NYLSLGASGAVSAVLFAFILLQPWTIILVLFIPAPAI 166
>gi|381201389|ref|ZP_09908516.1| hypothetical protein SyanX_12883 [Sphingobium yanoikuyae XLDN2-5]
Length = 397
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 26 IPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
+P LG + SMV+ P L +SA A+ + R ++ + L F HG MHL
Sbjct: 183 VPAVLLGAGCVVSMVWTTFTGGPEGLLRWGLSAKALSEGR-FETIFLHMFAHGSAMHLMM 241
Query: 86 NMVSLILKGRQLEKIYG 102
NM +L G L G
Sbjct: 242 NMTALAAIGPTLTSRLG 258
>gi|281424725|ref|ZP_06255638.1| rhomboid family protein [Prevotella oris F0302]
gi|281401095|gb|EFB31926.1| rhomboid family protein [Prevotella oris F0302]
Length = 319
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 67 YKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+ +L+ F H + H+++NM +L + G +E ++G KFL I + ++ +
Sbjct: 54 FYQLVTYMFMHANLEHIFFNMFALWMFGMVVENVWGPRKFLFYYILCGIGAGVFQEAAQF 113
Query: 127 IVFYITNDTS----------ELSH---------CAIGFSAVLFAMKTILTRLQPDAYQQI 167
+ FY+T + E++H +G S ++A+ + P+ I
Sbjct: 114 VSFYMTVSSQVPSFALSQFPEIAHQLSPMLNNWTTVGASGAVYAILLAFGMIFPNEKLFI 173
Query: 168 LNINVKAIYAPWFELII--IYLLVP------NASFKGHLSGILVGL 205
+ I V I A WF +I I L N + HL G++VG
Sbjct: 174 IPIPV-PIKAKWFVMIYAGIELFAAMATTGDNVAHLAHLGGMVVGF 218
>gi|262368794|ref|ZP_06062123.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|381197586|ref|ZP_09904926.1| hypothetical protein AlwoW_10013 [Acinetobacter lwoffii WJ10621]
gi|262316472|gb|EEY97510.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 205
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
+ ++ I +Q+ Y R I F H D MHL +NM +L G +E Y
Sbjct: 28 NVMNRLIFWPPAMQRGQYDRFITHGFIHADGMHLLFNMFTLFFFGSIIESFY 79
>gi|374609055|ref|ZP_09681852.1| Rhomboid family protein [Mycobacterium tusciae JS617]
gi|373552795|gb|EHP79398.1| Rhomboid family protein [Mycobacterium tusciae JS617]
Length = 282
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ ++ RL+ SAF H H+ +NM +L + G LE G +F+ L FTS
Sbjct: 100 SPAVADGEWYRLLTSAFLHYGVTHILFNMWALYVVGPPLEAALGRLRFIGL-----YFTS 154
Query: 119 -LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
L +L Y++ + T+ S G F + RL D I I +
Sbjct: 155 ALGGSVLVYLLSSLGAQTAGASGAIFGLFGATFVVG---KRLNLDVRWVIGLIALNMA-- 209
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVG 204
F +I + N S++GH+ G++ G
Sbjct: 210 --FTFVIPLVSSQNISWQGHIGGLVTG 234
>gi|188576423|ref|YP_001913352.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188520875|gb|ACD58820.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 202
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKI 100
AV + + Y RL+ F H D HL +NMV+L GR +E +
Sbjct: 33 AVDKHKQYDRLVTYGFIHADLGHLVFNMVTLFFFGRVIESV 73
>gi|167518123|ref|XP_001743402.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778501|gb|EDQ92116.1| predicted protein [Monosiga brevicollis MX1]
Length = 301
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 25/159 (15%)
Query: 68 KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+RL L + HGD HL +N+ + I+ QLEK G +F L++ +T+ LYY+ L I
Sbjct: 7 QRLFLFSLIHGDIFHLAFNLCAFIMVAPQLEKDLGSFRFAYLLLVVTLLLGLYYLFLTGI 66
Query: 128 --VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+FY D+S CA GFS + A I + + P EL I
Sbjct: 67 AAIFY-GEDSSFWYGCATGFSGNVLACMVI--------WVYSFTAQTRISIGPAIELPIT 117
Query: 186 YLLVP----------NASFKGHLSGILVGLTYTDTPIGW 214
++ P +A+F H+ G+ VG Y GW
Sbjct: 118 -IMPPVLLLLSLLFRSATFWCHVMGLAVGFCYVQ---GW 152
>gi|386002483|ref|YP_005920782.1| rhomboid family protein [Methanosaeta harundinacea 6Ac]
gi|357210539|gb|AET65159.1| Rhomboid family protein [Methanosaeta harundinacea 6Ac]
Length = 236
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
LI F H D HL +NM+ L G +LE+ G +FL + I ++ +V
Sbjct: 94 LITHIFVHADMAHLLFNMIFLFFFGTELERRVGESRFLQIFI------------ISGLVA 141
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL- 188
I + +G S LF + L + P+ + + +I A II
Sbjct: 142 AIGQMAVLPAGSMVGASGALFGVMGCLAVIAPEITVLLFFVIPLSIRAAVVLFAIIDFAF 201
Query: 189 ---VPNASFKGHLSGILVGLTY 207
N + H++G+LVGL Y
Sbjct: 202 MGSADNIAHMAHIAGLLVGLAY 223
>gi|381171870|ref|ZP_09881009.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|390993222|ref|ZP_10263409.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418516431|ref|ZP_13082605.1| hypothetical protein MOU_06431 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418519737|ref|ZP_13085789.1| hypothetical protein WS7_01710 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|372552048|emb|CCF70384.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|380687699|emb|CCG37496.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|410705181|gb|EKQ63660.1| hypothetical protein WS7_01710 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410706970|gb|EKQ65426.1| hypothetical protein MOU_06431 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 231
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + L +L+A+
Sbjct: 64 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAWF 122
>gi|346725572|ref|YP_004852241.1| integral membrane protein [Xanthomonas axonopodis pv. citrumelo F1]
gi|346650319|gb|AEO42943.1| integral membrane protein [Xanthomonas axonopodis pv. citrumelo F1]
Length = 231
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + L +L+A+
Sbjct: 64 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAWF 122
>gi|218248147|ref|YP_002373518.1| rhomboid family protein [Cyanothece sp. PCC 8801]
gi|218168625|gb|ACK67362.1| Rhomboid family protein [Cyanothece sp. PCC 8801]
Length = 198
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V+ Q + RL+ + F H +HL+ NM+ L GR +E + G F L+I+ F S
Sbjct: 45 VVVQGEVWRLLTANFLHYSWLHLFVNMIGLYFLGRLVELKF--GVFRYLIIY---FVSGL 99
Query: 121 YILLAYIVFYI-TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
+ A+ F I TNDT + A G A++ + +I + +Q+ I + +
Sbjct: 100 GAMAAFTYFAITTNDTDYILLGASG--AIMGLVGSITALFLQNFWQERSRIATRRLQFIL 157
Query: 180 FEL---IIIYLLVPNASFKGHLSGILVG 204
+ + +P SF HL G+++G
Sbjct: 158 LSIGLQFVFDFFIPEVSFLSHLFGLIIG 185
>gi|455648311|gb|EMF27191.1| hypothetical protein H114_20747 [Streptomyces gancidicus BKS 13-15]
Length = 295
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ ++ RL+ S F H + H+ +NM+SL L G LE+ G ++L+L + + S
Sbjct: 127 VADGEWYRLVTSMFTHEEIWHIGFNMLSLWLLGGPLEQHLGRARYLALYLISGLAGSALT 186
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
LLA T+ L F LF +L R L +++ I A
Sbjct: 187 YLLA------GGGTASLGASGAVFG--LFGATAVLMRR--------LRYDMRPIVA---- 226
Query: 182 LIIIYLLV----PNASFKGHLSGILVGL 205
L++I L++ +++ H+ G++ G+
Sbjct: 227 LLVINLVITFGWSGIAWQAHIGGLVAGV 254
>gi|205374009|ref|ZP_03226809.1| hypothetical protein Bcoam_12572 [Bacillus coahuilensis m4-4]
Length = 392
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I + ++ R I F H HL N +L+L GR++EKI+G +FL + + +
Sbjct: 218 NPLILEGEWWRFITPIFLHIGFFHLLMNTFALVLIGREVEKIFGKWRFLFIYLLAGIIGC 277
Query: 119 LYYILLAYIVFYITNDTSELSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKAIYA 177
+A F ++ S G F A+L+ T P + + + +N+ I
Sbjct: 278 -----IASFYFNPVGLSAGASGAIFGCFGALLYFGYTF-----PQVFFRTMGMNILVIVG 327
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
+++ VP GH+ G++ G T
Sbjct: 328 ---LNLVLGFTVPGIDNAGHIGGLVGGFIAT 355
>gi|367009458|ref|XP_003679230.1| hypothetical protein TDEL_0A06870 [Torulaspora delbrueckii]
gi|359746887|emb|CCE90019.1| hypothetical protein TDEL_0A06870 [Torulaspora delbrueckii]
Length = 267
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 19/189 (10%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL H HL++N++SL+ E +G ++ V T L Y L +
Sbjct: 53 RLSNYPLAHLSFFHLFFNVISLMGPLNLFESQHGTVHTGVVLNLAAVITGLLYCLFGRLA 112
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ + C F F +K + L P + N + +P LI+I +
Sbjct: 113 YPDASVAGASGWCFTMFG--YFGLKE--SALHPRYHIPGSNFAFPTVLSPLVLLILISIF 168
Query: 189 VPNASFKGHLSGILVGLTYTDT--------PIGWGLDYVVDKCQEMI-------NGEEQE 233
VP SF GH ++VG P W + + +K + +I ++
Sbjct: 169 VPGVSFWGHFFALMVGYFIGSKEKVFRKIMPPSWIIQKIEEKAEPLIALIPSWVKFYREK 228
Query: 234 DMGEEQKQN 242
DM E Q
Sbjct: 229 DMTERDTQK 237
>gi|20092655|ref|NP_618730.1| rhomboid protein [Methanosarcina acetivorans C2A]
gi|19917938|gb|AAM07210.1| rhomboid protein [Methanosarcina acetivorans C2A]
Length = 226
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
L+ F H HL++NM+ L G LE+ G + L + V +++ Y L+ +F
Sbjct: 72 LVTYIFLHTGLWHLFFNMLVLYFFGTALERRVGNKQLLGIFFTAGVLSAIGYAFLSRPIF 131
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
I +G S ++ + LT L+P+ + + ++ +A + +L+V
Sbjct: 132 NIYPGP------MVGASGAIYGVFAALTVLEPNIKVYVYFVPMRLKHALLLFAVFDFLMV 185
Query: 190 PNA---SFKGHLSGILVGL 205
++ + HLSG+ VGL
Sbjct: 186 NSSDMIAHTAHLSGLFVGL 204
>gi|448088893|ref|XP_004196660.1| Piso0_003885 [Millerozyma farinosa CBS 7064]
gi|448093058|ref|XP_004197691.1| Piso0_003885 [Millerozyma farinosa CBS 7064]
gi|359378082|emb|CCE84341.1| Piso0_003885 [Millerozyma farinosa CBS 7064]
gi|359379113|emb|CCE83310.1| Piso0_003885 [Millerozyma farinosa CBS 7064]
Length = 283
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 27/185 (14%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
I + RL H D +H N+V L EK +G TV+T +
Sbjct: 56 GAIFHLELNRLSFYLLYHKDIIHWTLNVVGLFTPLSIFEKQHG-----------TVYTGI 104
Query: 120 YYILL---AYIVFYITNDTSELSHCAIGFSAVLFAMKTILT----RLQPDAYQ---QILN 169
LL A + F + + S IG S V+F+ + + +P Y Q
Sbjct: 105 TLNLLTVTAGVQFSLISALLGSSTHVIGLSGVVFSFLSYFAYKEHQYKPILYTYQFQGRT 164
Query: 170 INVKAIYAPWFELIIIYLLVPNASFKGHLSGI----LVGLTYTDT--PIGWGLDYVVDKC 223
+N+ +Y+P+ L I +++P++S GHL+G+ L+ L Y P W L + K
Sbjct: 165 VNIPTLYSPFIVLAICAIILPSSSILGHLAGVSSGYLLALDYLKILYPPSWILQSIESKL 224
Query: 224 QEMIN 228
I+
Sbjct: 225 APAIS 229
>gi|453362588|dbj|GAC81512.1| hypothetical protein GM1_036_00120 [Gordonia malaquae NBRC 108250]
Length = 234
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 38 SMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQL 97
++ Y +I+R+ V IS Q Y RL+ S F H HL NM SL + G L
Sbjct: 40 TLFYSSIYRE-----GVLISGAGFDDQ--YWRLLTSGFLHQSVPHLAINMFSLYIIGADL 92
Query: 98 EKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT 157
E+ G G++L+ I+L ++A+ + + + + ++ A+ +L
Sbjct: 93 ERALGRGRYLA--IYLVSLLGGSAAVMAF-----QSGVTATAGASGAIYGLMGALLILLL 145
Query: 158 RLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
R++ Q +L V AI I+I + +P S GHL G++ G
Sbjct: 146 RVKAP-VQTVL--GVIAIN------IVISVTIPGISLFGHLGGLVFG 183
>gi|21226784|ref|NP_632706.1| hypothetical protein MM_0682 [Methanosarcina mazei Go1]
gi|452209269|ref|YP_007489383.1| rhomboid family serine protease [Methanosarcina mazei Tuc01]
gi|20905079|gb|AAM30378.1| integral membrane protein [Methanosarcina mazei Go1]
gi|452099171|gb|AGF96111.1| rhomboid family serine protease [Methanosarcina mazei Tuc01]
Length = 222
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
L+ F H HL++NM+ L G LE+ G + L + + +++ Y L+ +F
Sbjct: 68 LVTYIFLHAGLGHLFFNMIVLYFFGTALERKVGNKQLLGIFFTAGILSAIGYTFLSRPIF 127
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
I +G S ++ + LT L+P+ + + ++ +A + +L+V
Sbjct: 128 DIYPGP------MVGASGAIYGVFAALTVLEPNLRVYVYFVPMRLKHALLLFAVFDFLMV 181
Query: 190 PNA---SFKGHLSGILVGL 205
+ + HLSG+ VGL
Sbjct: 182 NSTDMIAHTAHLSGLFVGL 200
>gi|77164433|ref|YP_342958.1| rhomboid-like protein [Nitrosococcus oceani ATCC 19707]
gi|76882747|gb|ABA57428.1| Rhomboid-like protein [Nitrosococcus oceani ATCC 19707]
Length = 223
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
LI S F H D HL N++ L + G+ +E G +F+ + + YILL
Sbjct: 70 LITSMFFHADTWHLASNLLFLWIFGKTIEDATGHARFIIFYFLCGIIAIMPYILL----- 124
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP----------- 178
N TS+ + IG S + + RL P + +I+ I ++ IY
Sbjct: 125 ---NPTSQ--NPIIGASGAISGVLGAYLRLFP--HSRIIAIYLRGIYPTLGQVPAEWVLI 177
Query: 179 -WFELIIIYLLVPNA-----SFKGHLSGILVGLTY 207
W+ L ++Y + +A +++ HLSG G+ +
Sbjct: 178 FWYGLQLLYGISADADQTTVAWEVHLSGFAAGMLF 212
>gi|193214499|ref|YP_001995698.1| rhomboid family protein [Chloroherpeton thalassium ATCC 35110]
gi|193087976|gb|ACF13251.1| Rhomboid family protein [Chloroherpeton thalassium ATCC 35110]
Length = 264
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 18/229 (7%)
Query: 22 GADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYK--RLILSAFEHGD 79
G IPPA ++ + V+L F P+ + A I +++ + + F HG
Sbjct: 12 GFAIIPPAIKTIILVNVGVFLLQFMTPFGGFLTGLGALWPIDSGNFEVWQPLTYMFLHGG 71
Query: 80 DMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS 139
H+ +NM +L + G ++E +G FT+ Y++ +
Sbjct: 72 FTHILFNMFALWIFGAEIENYWG----------TRHFTTYYFVCGVGAALINLIASIGAG 121
Query: 140 HCAIGFSAVLFAMKTILTRLQPDAY---QQILNINVKAIYAPW--FELIIIYLLVPNASF 194
+G S +F + + P+ Y + I K A + E + + +
Sbjct: 122 GPTVGASGAVFGVLLAFGMMFPNRYIFLYFLFPIKAKYFVAGYAIIEFFSTFNINSPVAH 181
Query: 195 KGHLSGILVGLTYTDTPIG-WGLDYVVDKCQEMINGEEQEDMGEEQKQN 242
HL G+LVG Y G W L +DK M + + E+++
Sbjct: 182 FAHLGGMLVGYVYIKIMQGEWPLQDWLDKIFPMKDSSPNQPSSREREEK 230
>gi|154249662|ref|YP_001410487.1| rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153598|gb|ABS60830.1| Rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
Length = 224
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 28 PATLGLVFLQSMVYL--NIFRKPWSTLDVC-----ISADAVIQQRDYKRLILSAFEHGDD 80
PA L L+ + S++ L +F+ + D+ +I+ + R+I + F HG
Sbjct: 7 PAYLYLILVNSLILLIFYVFKTFFIKSDLAYLLFGAQYGPLIKSGQWYRIITAMFMHGGF 66
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH 140
+HL +NM +L + G E IYG +F++ + + +A +FY + + S
Sbjct: 67 LHLAFNMYALYIIGNYAEGIYGTYRFITYYFITGIVGN-----VATHIFYYGSLSVGASG 121
Query: 141 CAIGFSAVLFA 151
G VLF
Sbjct: 122 AIFGLVGVLFG 132
>gi|335430608|ref|ZP_08557497.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|335431252|ref|ZP_08558135.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334886957|gb|EGM25302.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334887825|gb|EGM26144.1| rhomboid family protein [Haloplasma contractile SSD-17B]
Length = 214
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 18/143 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMV-SLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILL 124
+ R + + F HG+ +H+ +NM LI+ G LE + G +F +V FLT S Y + L
Sbjct: 68 QFYRFLTAMFLHGNFLHILFNMFFGLIILGAALEGLIGSTRFF-IVYFLTGIASSYGVYL 126
Query: 125 AYIVFYITNDTSELSHCAIGFSAVLFAM---KTILTRLQPDAYQQILNINVKAIYAPWFE 181
+ +T S + +G +LF + KT++ Q++ +NV
Sbjct: 127 LSGPYTVTVGASGAIYGILG--VLLFMIVFKKTLVPYNDRKLIAQLIILNV--------- 175
Query: 182 LIIIYLLVPNASFKGHLSGILVG 204
I+ ++ S +GHLSG++ G
Sbjct: 176 --ILSFVLSGISLEGHLSGLIAG 196
>gi|222624952|gb|EEE59084.1| hypothetical protein OsJ_10909 [Oryza sativa Japonica Group]
Length = 394
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L++ G+ LE ++G + L + + + TS + A I++YIT L GF
Sbjct: 102 SIVGLLVLGKVLEPLWGAKELLKFIFLVNLSTSACVFVTAIILYYITQQEIYLYTPLSGF 161
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
VL + ++ PD + +N+KA + P
Sbjct: 162 YGVLSGFLVGIKQILPDQEITLFLLNIKAKWIP 194
>gi|78048457|ref|YP_364632.1| rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036887|emb|CAJ24580.1| Rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 231
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + L +L+A+
Sbjct: 64 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGLCQLLMAWF 122
>gi|389708989|ref|ZP_10186729.1| hypothetical protein HADU_07100 [Acinetobacter sp. HA]
gi|388610293|gb|EIM39419.1| hypothetical protein HADU_07100 [Acinetobacter sp. HA]
Length = 205
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 30 TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVS 89
T+ L+ + ++ F K ++ I IQ+ Y R I F H D HL +NM++
Sbjct: 9 TVTLILITCIISFIAFSKE-QVMNRLIFWPPAIQRGQYDRFISHGFIHADGTHLLFNMIT 67
Query: 90 LILKGRQLEKIY 101
L G +E Y
Sbjct: 68 LFFFGSIIESFY 79
>gi|326202014|ref|ZP_08191884.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
gi|325987809|gb|EGD48635.1| Rhomboid family protein [Clostridium papyrosolvens DSM 2782]
Length = 519
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
+ +I + Y R F H D +HL N S+ + G Q+EKI+G G+FL++
Sbjct: 222 NNLIMEGQYWRFFTPMFLHADIVHLAVNCYSIYIIGAQVEKIFGRGRFLAI 272
>gi|163815124|ref|ZP_02206505.1| hypothetical protein COPEUT_01280 [Coprococcus eutactus ATCC 27759]
gi|158449533|gb|EDP26528.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 333
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
++ ++ A+ ++R Y R + S F H HL NMV LI G ++E I G + +
Sbjct: 170 ELAVNVYAISEKRQYYRFLTSMFTHFGITHLLGNMVILIALGARIENIIGRLNY----VI 225
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIG 144
+ + T L +YI F+ ND + S A G
Sbjct: 226 VYIVTGLAAAFASYINFF-CNDIYDYSAGASG 256
>gi|84623888|ref|YP_451260.1| hypothetical protein XOO_2231 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84367828|dbj|BAE68986.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 202
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKI 100
AV + + Y RL+ F H D HL +NMV+L GR +E +
Sbjct: 33 AVDKHKQYDRLVTYGFIHADLGHLVFNMVTLFFFGRVIESV 73
>gi|407006730|gb|EKE22564.1| hypothetical protein ACD_6C00783G0003 [uncultured bacterium]
Length = 205
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 30 TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVS 89
T+ ++ + +V F K + ++ I +Q+ Y R I F H D HL +NM++
Sbjct: 9 TVTIILITCIVSFIAFSKE-TVMNRLIFWPPALQRGQYDRFITHGFIHADGAHLLFNMIT 67
Query: 90 LILKGRQLEKIY 101
L G +E Y
Sbjct: 68 LFFFGSVIESFY 79
>gi|262375820|ref|ZP_06069052.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309423|gb|EEY90554.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 205
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 30 TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVS 89
T+ ++ + +V F K + ++ I +Q+ Y R I F H D HL +NM++
Sbjct: 9 TVTIILITCIVSFIAFSKE-TVMNRLIFWPPALQRGQYDRFITHGFIHADGTHLLFNMIT 67
Query: 90 LILKGRQLEKIY 101
L G +E Y
Sbjct: 68 LFFFGSVIESFY 79
>gi|29377262|ref|NP_816416.1| small hydrophobic molecule transporter protein [Enterococcus
faecalis V583]
gi|227554271|ref|ZP_03984318.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229544828|ref|ZP_04433553.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|229549095|ref|ZP_04437820.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|256616711|ref|ZP_05473557.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256854083|ref|ZP_05559448.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256960966|ref|ZP_05565137.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|257081651|ref|ZP_05576012.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|257084247|ref|ZP_05578608.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|257087753|ref|ZP_05582114.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|257091025|ref|ZP_05585386.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257420174|ref|ZP_05597168.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257421601|ref|ZP_05598591.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382447|ref|ZP_06628382.1| rhomboid family protein [Enterococcus faecalis R712]
gi|293387169|ref|ZP_06631730.1| rhomboid family protein [Enterococcus faecalis S613]
gi|300860492|ref|ZP_07106579.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|307276144|ref|ZP_07557275.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|307286868|ref|ZP_07566950.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|312900482|ref|ZP_07759784.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|312904732|ref|ZP_07763881.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|312906502|ref|ZP_07765504.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|312910446|ref|ZP_07769292.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|312951098|ref|ZP_07770003.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|384514113|ref|YP_005709206.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|384519578|ref|YP_005706883.1| rhomboid family protein [Enterococcus faecalis 62]
gi|421512726|ref|ZP_15959525.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|422684496|ref|ZP_16742732.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|422690193|ref|ZP_16748251.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|422691144|ref|ZP_16749183.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|422693799|ref|ZP_16751805.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|422697513|ref|ZP_16755449.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|422699619|ref|ZP_16757482.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|422702192|ref|ZP_16760030.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|422706114|ref|ZP_16763819.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|422709156|ref|ZP_16766669.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|422712654|ref|ZP_16769417.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|422716503|ref|ZP_16773207.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|422719592|ref|ZP_16776223.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|422723419|ref|ZP_16779955.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|422726049|ref|ZP_16782504.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|422731124|ref|ZP_16787499.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|422734025|ref|ZP_16790322.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|422738373|ref|ZP_16793570.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|424672612|ref|ZP_18109567.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|424755744|ref|ZP_18183600.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|428767934|ref|YP_007154045.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|430359105|ref|ZP_19425721.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|430370856|ref|ZP_19429263.1| membrane-associated serine protease [Enterococcus faecalis M7]
gi|29344728|gb|AAO82486.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis V583]
gi|227176561|gb|EEI57533.1| S54 family peptidase [Enterococcus faecalis HH22]
gi|229305783|gb|EEN71779.1| S54 family peptidase [Enterococcus faecalis ATCC 29200]
gi|229310050|gb|EEN76037.1| S54 family peptidase [Enterococcus faecalis TX1322]
gi|256596238|gb|EEU15414.1| membrane-associated serine protease [Enterococcus faecalis ATCC
4200]
gi|256711026|gb|EEU26069.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256951462|gb|EEU68094.1| membrane-associated serine protease [Enterococcus faecalis Merz96]
gi|256989681|gb|EEU76983.1| membrane-associated serine protease [Enterococcus faecalis E1Sol]
gi|256992277|gb|EEU79579.1| membrane-associated serine protease [Enterococcus faecalis Fly1]
gi|256995783|gb|EEU83085.1| membrane-associated serine protease [Enterococcus faecalis D6]
gi|256999837|gb|EEU86357.1| membrane-associated serine protease [Enterococcus faecalis CH188]
gi|257162002|gb|EEU91962.1| membrane-associated serine protease [Enterococcus faecalis T11]
gi|257163425|gb|EEU93385.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080131|gb|EFE17495.1| rhomboid family protein [Enterococcus faecalis R712]
gi|291083440|gb|EFE20403.1| rhomboid family protein [Enterococcus faecalis S613]
gi|295113720|emb|CBL32357.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Enterococcus sp. 7L76]
gi|300849531|gb|EFK77281.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
TUSoD Ef11]
gi|306502083|gb|EFM71369.1| peptidase, S54 family protein [Enterococcus faecalis TX0109]
gi|306507138|gb|EFM76277.1| peptidase, S54 family protein [Enterococcus faecalis TX2134]
gi|310627445|gb|EFQ10728.1| peptidase, S54 family protein [Enterococcus faecalis DAPTO 512]
gi|310630874|gb|EFQ14157.1| peptidase, S54 family protein [Enterococcus faecalis TX0102]
gi|310631933|gb|EFQ15216.1| peptidase, S54 family protein [Enterococcus faecalis TX0635]
gi|311289218|gb|EFQ67774.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
DAPTO 516]
gi|311292401|gb|EFQ70957.1| peptidase, S54 family protein [Enterococcus faecalis TX0470]
gi|315026583|gb|EFT38515.1| peptidase, S54 family protein [Enterococcus faecalis TX2137]
gi|315030810|gb|EFT42742.1| peptidase, S54 family protein [Enterococcus faecalis TX4000]
gi|315033041|gb|EFT44973.1| peptidase, S54 family protein [Enterococcus faecalis TX0017]
gi|315036315|gb|EFT48247.1| peptidase, S54 family protein [Enterococcus faecalis TX0027]
gi|315145726|gb|EFT89742.1| peptidase, S54 family protein [Enterococcus faecalis TX2141]
gi|315148748|gb|EFT92764.1| peptidase, S54 family protein [Enterococcus faecalis TX4244]
gi|315154212|gb|EFT98228.1| peptidase, S54 family protein [Enterococcus faecalis TX0031]
gi|315156498|gb|EFU00515.1| peptidase, S54 family protein [Enterococcus faecalis TX0043]
gi|315158975|gb|EFU02992.1| peptidase, S54 family protein [Enterococcus faecalis TX0312]
gi|315162792|gb|EFU06809.1| peptidase, S54 family protein [Enterococcus faecalis TX0645]
gi|315166274|gb|EFU10291.1| peptidase, S54 family protein [Enterococcus faecalis TX1302]
gi|315169133|gb|EFU13150.1| peptidase, S54 family protein [Enterococcus faecalis TX1341]
gi|315171857|gb|EFU15874.1| peptidase, S54 family protein [Enterococcus faecalis TX1342]
gi|315173893|gb|EFU17910.1| peptidase, S54 family protein [Enterococcus faecalis TX1346]
gi|315575258|gb|EFU87449.1| peptidase, S54 family protein [Enterococcus faecalis TX0309B]
gi|315576837|gb|EFU89028.1| peptidase, S54 family protein [Enterococcus faecalis TX0630]
gi|315582383|gb|EFU94574.1| peptidase, S54 family protein [Enterococcus faecalis TX0309A]
gi|323481711|gb|ADX81150.1| rhomboid family protein [Enterococcus faecalis 62]
gi|327536002|gb|AEA94836.1| rhomboid family protein [Enterococcus faecalis OG1RF]
gi|401674182|gb|EJS80541.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecalis ATCC 29212]
gi|402354963|gb|EJU89751.1| peptidase, S54 family [Enterococcus faecalis 599]
gi|402408930|gb|EJV41379.1| peptidase, S54 family [Enterococcus faecalis R508]
gi|427186107|emb|CCO73331.1| small hydrophobic molecule transporter protein, putative
[Enterococcus faecalis str. Symbioflor 1]
gi|429513460|gb|ELA03041.1| membrane-associated serine protease [Enterococcus faecalis OG1X]
gi|429515221|gb|ELA04739.1| membrane-associated serine protease [Enterococcus faecalis M7]
Length = 236
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L + + + +
Sbjct: 56 VAQNHEYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN-- 113
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A F N S + A+ F LF IL R D N + + +
Sbjct: 114 ---IASFAFGTPNSVSAGASTAL-FG--LFGAFVILGRHFRD------NPAIMYMVQRYS 161
Query: 181 ELIIIYLLV----PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
I+I LL + GH+ G++ GL + V +E N E+
Sbjct: 162 MFIVINLLFNLFSSSVDMMGHVGGLIGGLLVATA-------FAVPNREEAFNKHER 210
>gi|421276262|ref|ZP_15727085.1| hypothetical protein SPAR10_0144 [Streptococcus mitis SPAR10]
gi|395878215|gb|EJG89282.1| hypothetical protein SPAR10_0144 [Streptococcus mitis SPAR10]
Length = 224
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL + F H H NM+SL GRQ+E I+G +F + + + +L+ +V
Sbjct: 60 RLFSATFVHIGLEHFLVNMLSLYFLGRQMEDIFGSKQFFFIYLLSGMMGNLF-----VLV 114
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL- 187
F T+ S G +FA +L + Y Q L + + L++I L
Sbjct: 115 FSPNAITAGASTALYG----MFASIVVLRYASRNPYLQQLGQS-------YLSLLVINLV 163
Query: 188 ---LVPNASFKGHLSGILVG 204
L+P S GHL G + G
Sbjct: 164 GSVLIPGISLAGHLGGAVGG 183
>gi|257079952|ref|ZP_05574313.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294779541|ref|ZP_06744936.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|307269340|ref|ZP_07550690.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|307289776|ref|ZP_07569713.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|397700974|ref|YP_006538762.1| rhomboid family protein [Enterococcus faecalis D32]
gi|256987982|gb|EEU75284.1| membrane-associated serine protease [Enterococcus faecalis JH1]
gi|294453420|gb|EFG21827.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecalis
PC1.1]
gi|306499161|gb|EFM68639.1| peptidase, S54 family protein [Enterococcus faecalis TX0411]
gi|306514339|gb|EFM82904.1| peptidase, S54 family protein [Enterococcus faecalis TX4248]
gi|397337613|gb|AFO45285.1| rhomboid family protein [Enterococcus faecalis D32]
Length = 236
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L + + + +
Sbjct: 56 VAQNHEYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN-- 113
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A F N S + A+ F LF IL R D N + + +
Sbjct: 114 ---IASFAFGTPNSVSAGASTAL-FG--LFGAFVILGRHFRD------NPAIMYMVQRYS 161
Query: 181 ELIIIYLLV----PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
I+I LL + GH+ G++ GL + V +E N E+
Sbjct: 162 MFIVINLLFNLFSSSVDMMGHVGGLIGGLLVATA-------FAVPNREEAFNKHER 210
>gi|418520077|ref|ZP_13086128.1| hypothetical protein WS7_03445 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410704737|gb|EKQ63219.1| hypothetical protein WS7_03445 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 202
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 14/121 (11%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW--GKFLSLVIFLTVFT 117
AV + + Y RL+ F H D HL +NM++L GR +E + G L+ +F
Sbjct: 33 AVDKHKQYDRLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFY---- 88
Query: 118 SLYYILLAYIVFYITN--DTSELSHCAIG-FSAVLFAMKTILTRLQPDAYQQILNINVKA 174
L ++++ + Y+ N + + LS A G SAVLFA +IL LQP +L I A
Sbjct: 89 -LAALVVSILPSYLKNQKNPNYLSLGASGAVSAVLFA--SIL--LQPWTIILVLFIPAPA 143
Query: 175 I 175
I
Sbjct: 144 I 144
>gi|313675606|ref|YP_004053602.1| rhomboid family protein [Marivirga tractuosa DSM 4126]
gi|312942304|gb|ADR21494.1| Rhomboid family protein [Marivirga tractuosa DSM 4126]
Length = 205
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 45 FRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLE----KI 100
F P + V+ ++ Y R+I S F H D +HL +NM++L G +E ++
Sbjct: 19 FSNPSRMYAWMFNPYQVVYRKQYYRMITSGFLHADYVHLIFNMLTLYFFGDAVEYYFNQL 78
Query: 101 YGWGKFLSLVIFLTV 115
+G FL + ++L+
Sbjct: 79 TNYGTFLYVGLYLSA 93
>gi|148544432|ref|YP_001271802.1| rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|184153796|ref|YP_001842137.1| hypothetical protein LAR_1141 [Lactobacillus reuteri JCM 1112]
gi|227363140|ref|ZP_03847275.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|325682754|ref|ZP_08162270.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
gi|148531466|gb|ABQ83465.1| Rhomboid family protein [Lactobacillus reuteri DSM 20016]
gi|183225140|dbj|BAG25657.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071858|gb|EEI10146.1| S54 family peptidase [Lactobacillus reuteri MM2-3]
gi|324977104|gb|EGC14055.1| S54 family peptidase [Lactobacillus reuteri MM4-1A]
Length = 219
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 26 IPPATLGLVFLQSMVYLNIFRKPWST-----LDVCISADAVIQQRDYKRLILSAFEHGDD 80
+ P TL L+ Q +VY + ST L++ + +I++ ++ RL+ F H
Sbjct: 8 LAPVTLTLIIFQVLVYCWLVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGL 67
Query: 81 MHLYYNMVSLILKGRQLEKIYG 102
HL N V+L+ GR +E+ +G
Sbjct: 68 SHLVVNSVTLLYIGRYIEEFFG 89
>gi|58581972|ref|YP_200988.1| hypothetical protein XOO2349 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58426566|gb|AAW75603.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 187
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKI 100
AV + + Y RL+ F H D HL +NMV+L GR +E +
Sbjct: 18 AVDKHKQYDRLVTYGFIHADLGHLVFNMVTLFFFGRVIESV 58
>gi|407797237|ref|ZP_11144183.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407018431|gb|EKE31157.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 204
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 26/169 (15%)
Query: 45 FRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWG 104
F W L V + ++ Q +Y RL+ F H H +N +L+L G LE++ G
Sbjct: 39 FAVEWKQLGV--GNNFLVSQGEYWRLLTPIFLHAGLSHTLFNSFTLVLFGPALERMLGKV 96
Query: 105 KFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELS------HCAIGFSAVLFAMKTILTR 158
KF ++AY++ I + + H +G S +F + I
Sbjct: 97 KF----------------IIAYLLAGIAGNIGTYAADPGAFHSHLGASGAIFGLFGIYAY 140
Query: 159 LQPDAYQQILNINVKAIYAPWFEL-IIIYLLVPNASFKGHLSGILVGLT 206
+ A + +L+ I + L +I+ L PN + GHL G + GL
Sbjct: 141 ML-FARKDLLDQASSQIIGVFIVLGLIMTFLQPNINVLGHLFGFIGGLA 188
>gi|183220412|ref|YP_001838408.1| hypothetical protein LEPBI_I1008 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910526|ref|YP_001962081.1| rhomboid family protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775202|gb|ABZ93503.1| Rhomboid family protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167778834|gb|ABZ97132.1| Conserved hypothetical protein; putative membrane protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 274
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 15/186 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
+ F+ +V F P L + +S + V + ++ L+ AF HG +H+ +NM+SL +
Sbjct: 29 IFFILQLVIKLTFHSPLVELYLGLSPELVFRGWVWQ-LVSYAFLHGSFLHILFNMLSLWM 87
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
G +L +++G FL F + I Y F I +G SA ++ +
Sbjct: 88 FGSELAEVWGERAFLKFYFFTAFLGGIGTITAQY--FGIPQG------VVVGASASIYGL 139
Query: 153 KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLV----PNASFKGHLSGILVGLTYT 208
P+ +++L + + A +F +I++ +++ + HL G + G+
Sbjct: 140 LVAYGMTWPN--RELLVFLIFPMRAKYFVMIVMLMVLFAQGERVAHFAHLGGAIGGVILM 197
Query: 209 DTPIGW 214
GW
Sbjct: 198 KLYTGW 203
>gi|425736005|ref|ZP_18854315.1| Rhomboid family protein [Brevibacterium casei S18]
gi|425478939|gb|EKU46122.1| Rhomboid family protein [Brevibacterium casei S18]
Length = 208
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 76 EHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA--YIVFYITN 133
E +HL NM+ L G +E+ G G+FL++ + + S+ +LLA + ++TN
Sbjct: 44 EQPSPIHLLANMIGLFFFGSFVERALGRGRFLAVYLLGAIGGSVMVLLLAEPWSRDWVTN 103
Query: 134 DTSELSHCAIGFSAVLFAMKTIL----TRLQPDAYQQILNINVKAIYAPWFELIIIYLLV 189
+ IG S +FA+ +L RL + +L + + Y LV
Sbjct: 104 N--------IGASGAVFAIIGVLLVPTKRLDRNITGVVLFVVLNFGYG---------FLV 146
Query: 190 PNASFKGHLSGILVG 204
S++ HL G+L G
Sbjct: 147 EGVSWEAHLGGLLTG 161
>gi|398824355|ref|ZP_10582692.1| putative membrane protein [Bradyrhizobium sp. YR681]
gi|398224972|gb|EJN11257.1| putative membrane protein [Bradyrhizobium sp. YR681]
Length = 402
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 26 IPPATLGLVFLQSMVY-----LNIFRKPWSTLDV-------CISADAVIQQRDYKRLILS 73
IP T+GL+F ++Y L I P +LDV D V+ + ++ R+ L+
Sbjct: 52 IPFLTIGLIFGLLLIYALQRNLAIDVAPDGSLDVRSLIAQGASGYDLVVGRNEWWRIGLA 111
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKF 106
HG + HL N V+L + G +LE + G G F
Sbjct: 112 PLLHGSNWHLIGNCVALFIVGVRLESLIGRGWF 144
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ S F H D H+ +NM++L GR +E G +FL L + + ++ LL
Sbjct: 137 RLLTSVFLHQDLSHIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGDVFVYLL---- 192
Query: 129 FYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPD 162
SE + IG S +F A +L R+ D
Sbjct: 193 -------SEPNQATIGASGAIFGLVGAFAVLLRRMNLD 223
>gi|376283529|ref|YP_005156739.1| hypothetical protein CD31A_0026 [Corynebacterium diphtheriae 31A]
gi|371577044|gb|AEX40712.1| putative membrane protein [Corynebacterium diphtheriae 31A]
Length = 205
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ R++ + F H HL NM L GR++E G G+F I + S +L+
Sbjct: 65 GWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMD 124
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ T S G A+ +M RL+ D ++ I V Y+
Sbjct: 125 PLA-----PTVGASGAVYGLMAIFVSMS---YRLRRDLTAPLILIAVNVGYS-------- 168
Query: 186 YLLVPNASFKGHLSGILVG 204
LL+ S GHL G+L G
Sbjct: 169 -LLMDGVSLWGHLGGLLTG 186
>gi|281414912|ref|ZP_06246654.1| uncharacterized membrane protein [Micrococcus luteus NCTC 2665]
gi|289706946|ref|ZP_06503281.1| peptidase, S54 (rhomboid) family protein [Micrococcus luteus SK58]
gi|289556271|gb|EFD49627.1| peptidase, S54 (rhomboid) family protein [Micrococcus luteus SK58]
Length = 258
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 79 DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL 138
HL NM++L + GR LE GW +FL+L + V +++ + + +D +
Sbjct: 94 GPTHLLLNMLALWVIGRVLEPALGWWRFLALYVLSAVGGAVFALWV--------SDPLQP 145
Query: 139 SHCAIGFSAVLFAMKTILTRLQPDAYQQI---LNINVKAIYAPWFELIIIYLLVPNASFK 195
A G +FA +LTR++ + I + +N ++ L+P +++
Sbjct: 146 VVGASGAVYGMFAALFLLTRVRGGQVRSIAVLIGLN-----------LVFSFLLPGVAWQ 194
Query: 196 GHLSGILVG 204
H+ G+L G
Sbjct: 195 VHVGGLLTG 203
>gi|255971815|ref|ZP_05422401.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255962833|gb|EET95309.1| conserved hypothetical protein [Enterococcus faecalis T1]
Length = 230
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L + + + +
Sbjct: 50 VAQNHEYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN-- 107
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A F N S + A+ F LF IL R D N + + +
Sbjct: 108 ---IASFAFGTPNSVSAGASTAL-FG--LFGAFVILGRHFRD------NPAIMYMVQRYS 155
Query: 181 ELIIIYLLV----PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
I+I LL + GH+ G++ GL + V +E N E+
Sbjct: 156 MFIVINLLFNLFSSSVDMMGHVGGLIGGLLVATA-------FAVPNREEAFNKHER 204
>gi|451821413|ref|YP_007457614.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787392|gb|AGF58360.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 332
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
LD +A+I + RL+ AF H +H+ NM SL + G Q+E+IYG K+L + I
Sbjct: 174 LDYGAKYNALIDKGQVWRLLTCAFLHSGLIHIACNMYSLYIIGPQIEQIYGTLKYLIIYI 233
Query: 112 FLTVFTS 118
++ S
Sbjct: 234 VSSITAS 240
>gi|371944005|gb|AEX61833.1| putative rhomboid protein [Megavirus courdo7]
Length = 152
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 72 LSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYI 131
L + H + HL N +SL LE + G +F +IF+ + +S+ + YI+ I
Sbjct: 23 LRTYYHANIEHLIANSISLYYLSF-LEDLLGHTQFAIAIIFIWLVSSM----ILYIIHAI 77
Query: 132 TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPN 191
+ +GFS V+F + I Y LN N I+ L+VP
Sbjct: 78 MPSRKVYT---VGFSGVIFGLIVI--------YYFSLNQNPGITMTGLIISILPQLVVPG 126
Query: 192 ASFKGHLSGILVGLTYT 208
SF+GHLSGI+ G+ Y
Sbjct: 127 ISFEGHLSGIIAGVIYV 143
>gi|441514647|ref|ZP_20996463.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
gi|441450558|dbj|GAC54424.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
Length = 294
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ +Y RL+ S F H MH+ NM+SL + GR LE G ++L++ + + S
Sbjct: 110 VAAGEYWRLLTSGFLHFSVMHVAVNMLSLYILGRDLELALGMARYLAVYLIALLGGSAAV 169
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL--TRLQPDAYQQILNINV 172
+L ND + + + ++ AM I+ R+ P I+ NV
Sbjct: 170 MLF-------ENDRALTAGASGAIYGLMGAMLVIILKARVSPVPVLLIIGFNV 215
>gi|347753198|ref|YP_004860763.1| Rhomboid family protein [Bacillus coagulans 36D1]
gi|347585716|gb|AEP01983.1| Rhomboid family protein [Bacillus coagulans 36D1]
Length = 377
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I + Y RLI F H MHL+ N +SL G +E+IYG G+F +L+ FT
Sbjct: 209 NPLIMEGQYWRLITPVFIHIGFMHLFMNSLSLYYIGPLVERIYGKGRF-ALIYLFAGFTG 267
>gi|116668581|ref|YP_829514.1| rhomboid family protein [Arthrobacter sp. FB24]
gi|116608690|gb|ABK01414.1| Rhomboid family protein [Arthrobacter sp. FB24]
Length = 293
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 69 RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R++ SAF H +H+ NM L + G+ LE + G +FL+L + V S+ Y+LL
Sbjct: 124 RMLTSAFLHSQGFILHIVLNMYMLWMFGQALEPLLGRIRFLALYLLAAVGGSVGYLLLT- 182
Query: 127 IVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+ + +G S +F AM + D Q + I +
Sbjct: 183 ----PSYTPGQQLAGVVGASGAIFGLFGAMLVVQRHRGGDTKQLWVLIAING-------- 230
Query: 183 IIIYLLVPNASFKGHLSGILVG 204
+I +VP +++ HL G++ G
Sbjct: 231 -VIGFIVPQIAWQAHLGGLVTG 251
>gi|299142060|ref|ZP_07035194.1| rhomboid family protein [Prevotella oris C735]
gi|298576522|gb|EFI48394.1| rhomboid family protein [Prevotella oris C735]
Length = 289
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 32/168 (19%)
Query: 67 YKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+ +L+ F H + H+++NM +L + G +E ++G KFL I + ++ +
Sbjct: 24 FYQLVTYMFMHANLEHIFFNMFALWMFGMVVENVWGPRKFLFYYILCGIGAGVFQEAAQF 83
Query: 127 IVFYITNDTS----------ELSH---------CAIGFSAVLFAMKTILTRLQPDAYQQI 167
+ FY+T + E++H +G S ++A+ + P+ I
Sbjct: 84 VSFYMTVSSQVPSFALSQFPEIAHQLSPMLNNWTTVGASGAVYAILLAFGMIFPNEKLFI 143
Query: 168 LNINVKAIYAPWFELIIIYLLVP----------NASFKGHLSGILVGL 205
+ I V I A WF ++IY + N + HL G++VG
Sbjct: 144 IPIPV-PIKAKWF--VMIYAGIELFAAMATTGDNVAHLAHLGGMVVGF 188
>gi|254434788|ref|ZP_05048296.1| peptidase, S54 (rhomboid) family [Nitrosococcus oceani AFC27]
gi|207091121|gb|EDZ68392.1| peptidase, S54 (rhomboid) family [Nitrosococcus oceani AFC27]
Length = 208
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
LI S F H D HL N++ L + G+ +E G +F+ + + YILL
Sbjct: 55 LITSMFFHADTWHLASNLLFLWIFGKTIEDATGHARFIIFYFLCGIIAIMPYILL----- 109
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP----------- 178
N TS+ + IG S + + RL P + +I+ I ++ IY
Sbjct: 110 ---NPTSQ--NPIIGASGAISGVLGAYLRLFP--HSRIIAIYLRGIYPTLGQVPAEWVLI 162
Query: 179 -WFELIIIYLLVPNA-----SFKGHLSGILVGLTY 207
W+ L ++Y + +A +++ HLSG G+ +
Sbjct: 163 FWYGLQLLYGISADADQTTVAWEVHLSGFAAGMLF 197
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 23/193 (11%)
Query: 24 DTIPPATLGLVFLQSMVY--LNIFRKPWST----LDVCISADAVIQQRDYKRLILSAFEH 77
+ P T GL+ L +++ +NI T +D+ A + ++ RLI S F H
Sbjct: 153 NKFSPITYGLILLNVIIWALINILHHNEFTDLKLIDLGALAHFNVVHGEWHRLITSMFLH 212
Query: 78 GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE 137
+ H+ +NM+SL + G+ LE I G + + + + +L + LA+ + DT
Sbjct: 213 LNFEHILFNMLSLFIFGKLLESILGSWRMFGVYMLSGIIGNL--VTLAF-----SPDTFS 265
Query: 138 L--SHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFK 195
L S G L A I + Q+L +++I L + N +
Sbjct: 266 LGASGAIFGLIGSLIACMIISQKFDQRTIGQLL--------LALLIMVVISLFISNINVL 317
Query: 196 GHLSGILVGLTYT 208
H+ G+L G+ T
Sbjct: 318 AHIGGLLGGVLVT 330
>gi|325921761|ref|ZP_08183583.1| uncharacterized membrane protein [Xanthomonas gardneri ATCC 19865]
gi|325547748|gb|EGD18780.1| uncharacterized membrane protein [Xanthomonas gardneri ATCC 19865]
Length = 202
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKI 100
A+ +Q+ Y RL+ F H D HL +NM++L GR +E +
Sbjct: 33 ALDKQKQYDRLVTYGFIHADLGHLVFNMITLFFFGRYIEDV 73
>gi|78047064|ref|YP_363239.1| rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925108|ref|ZP_08186525.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|346724352|ref|YP_004851021.1| hypothetical protein XACM_1440 [Xanthomonas axonopodis pv.
citrumelo F1]
gi|381170297|ref|ZP_09879455.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|390989747|ref|ZP_10260042.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418515745|ref|ZP_13081924.1| hypothetical protein MOU_02892 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|78035494|emb|CAJ23139.1| putative Rhomboid family membrane protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325544474|gb|EGD15840.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|346649099|gb|AEO41723.1| Uncharacterized membrane protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|372555611|emb|CCF67017.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|380689167|emb|CCG35942.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|410707654|gb|EKQ66105.1| hypothetical protein MOU_02892 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 202
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW--GKFLSLVIFLTVFT 117
AV + + Y RL+ F H D HL +NM++L GR +E + G L+ +F
Sbjct: 33 AVDKHKQYDRLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFY---- 88
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
L ++++ + Y+ N + ++ ++G S + A+ LQP +L I AI
Sbjct: 89 -LAALVVSILPSYLKNQKNP-NYLSLGASGAVSAVLFAFILLQPWTIILVLFIPAPAI 144
>gi|418678720|ref|ZP_13239994.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418685906|ref|ZP_13247077.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|418743050|ref|ZP_13299419.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089354|ref|ZP_15550165.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|421131426|ref|ZP_15591608.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|400321910|gb|EJO69770.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001967|gb|EKO52493.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410357209|gb|EKP04476.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410739601|gb|EKQ84328.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410749793|gb|EKR06777.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 197
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NMVS G+ LE G +F+
Sbjct: 36 RNKNYYTLLTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFI 80
>gi|344201594|ref|YP_004786737.1| peptidase S54, rhomboid domain-containing protein [Muricauda
ruestringensis DSM 13258]
gi|343953516|gb|AEM69315.1| Peptidase S54, rhomboid domain protein [Muricauda ruestringensis
DSM 13258]
Length = 244
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 30/151 (19%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ +++ F HG+ MH+ +NM +L G LE+I+G KFL + ++ + +
Sbjct: 44 EWWQVVTHMFMHGNFMHILFNMYALWAFGTPLERIWGRNKFLFFYFSAGLGSAALHTGVN 103
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP-WFELI- 183
Y +F S L I A QIL+I Y+P W++++
Sbjct: 104 YFLF--NEGMSALEGAGI-------------------ARTQILDILANGQYSPGWYDIVG 142
Query: 184 -------IIYLLVPNASFKGHLSGILVGLTY 207
++ P G + GILV +
Sbjct: 143 KSTVDSMLMAFNTPAVGASGAIYGILVAFAF 173
>gi|292618421|ref|XP_001344100.3| PREDICTED: uncharacterized protein At3g58460-like [Danio rerio]
Length = 380
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 90 LILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTS-----ELSHCAIG 144
++ R LEK G +FL + L+ T L Y+LL ++ ++ +S L+ +G
Sbjct: 84 MVFPCRGLEKGVGSVRFLHRTLLLSSITGLLYVLLESLLISPSSRSSVNGLIPLALSVLG 143
Query: 145 FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ MK AY I+ INV PW LIII L VPN F ++ I+ G
Sbjct: 144 LMTINSGMKV--------AY--IMGINVPTSSLPWIFLIIITLFVPNTVFMCNVLAIVTG 193
Query: 205 LTYTDTPIGW 214
+ Y +GW
Sbjct: 194 ILYG---MGW 200
>gi|228469447|ref|ZP_04054455.1| rhomboid family protein [Porphyromonas uenonis 60-3]
gi|228309022|gb|EEK17665.1| rhomboid family protein [Porphyromonas uenonis 60-3]
Length = 240
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 26 IPPATLGLVFLQSMVYLNIFRKPWSTLDVC-ISADAVIQQRDYK--RLILSAFEHGDDMH 82
IPP TL L+ + + YL P +D+ + + D+ + I F HG H
Sbjct: 12 IPPVTLNLLIINVLCYLAQQVLPRVGIDLTGLLGLHYVTAHDFHVWQPISYMFLHGSFTH 71
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFL 107
L++NM +L + G +E+ +G +FL
Sbjct: 72 LFFNMFALFMFGTTIERTWGAKRFL 96
>gi|42525643|ref|NP_970741.1| rhomboid [Treponema denticola ATCC 35405]
gi|422340835|ref|ZP_16421776.1| rhomboid family protein [Treponema denticola F0402]
gi|449103871|ref|ZP_21740614.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|449106028|ref|ZP_21742720.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|449108116|ref|ZP_21744760.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|449110633|ref|ZP_21747233.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|449114556|ref|ZP_21751033.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|449118805|ref|ZP_21755206.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|449121194|ref|ZP_21757546.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|449124938|ref|ZP_21761255.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|449129942|ref|ZP_21766170.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|451967767|ref|ZP_21920996.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
gi|41815654|gb|AAS10622.1| rhomboid family protein [Treponema denticola ATCC 35405]
gi|325475239|gb|EGC78424.1| rhomboid family protein [Treponema denticola F0402]
gi|448940621|gb|EMB21526.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|448944577|gb|EMB25455.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|448951420|gb|EMB32233.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|448951833|gb|EMB32642.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|448956181|gb|EMB36943.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|448960007|gb|EMB40724.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|448961966|gb|EMB42660.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|448964324|gb|EMB44996.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|448966596|gb|EMB47251.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|451703553|gb|EMD57919.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
Length = 209
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 24/164 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V++ + Y + F HGD HL +NM++L G +E+ G +F+ LY
Sbjct: 47 VVEAQTYWQFFTYQFVHGDFFHLAFNMLALFFFGVPVERKIGTKEFI-----------LY 95
Query: 121 YILLAYI----VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIY 176
Y+L+ I F + T + IG S +F + + L P++ I V +
Sbjct: 96 YLLIGTIGGILSFLVYAATGFYTITLIGASGAIFGVLLLYAVLYPNSVIYIW--GVIPVP 153
Query: 177 APWF-------ELIIIYLLVPNASFKGHLSGILVGLTYTDTPIG 213
AP ELI I+ + + H G++ G Y G
Sbjct: 154 APLLILGYAVIELISIFSIGDGVAHLTHFIGLIAGWVYIRIRFG 197
>gi|325831232|ref|ZP_08164524.1| peptidase, S54 family [Eggerthella sp. HGA1]
gi|325486833|gb|EGC89280.1| peptidase, S54 family [Eggerthella sp. HGA1]
Length = 263
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
D R + F H D MHL +NMV+L G LE+ G G +L+L
Sbjct: 88 DLYRFVTPMFLHMDLMHLGFNMVALYSVGEVLERTLGRGNYLAL 131
>gi|354604586|ref|ZP_09022575.1| hypothetical protein HMPREF9450_01490 [Alistipes indistinctus YIT
12060]
gi|353347165|gb|EHB91441.1| hypothetical protein HMPREF9450_01490 [Alistipes indistinctus YIT
12060]
Length = 230
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 22 GADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI--QQRDYK--RLILSAFEH 77
GA T PP L+ + ++ +L P D+ I + Q +++ +LI F H
Sbjct: 6 GAFTTPPVVKNLIIINALFFLAEVILPNGLGDLLIDKLGLYPWQSPNFRLYQLITHMFLH 65
Query: 78 GDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
G HL+ NM +L + GR LE G +FL
Sbjct: 66 GGIAHLFMNMFALWMFGRTLEYDMGSKRFL 95
>gi|227519427|ref|ZP_03949476.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|424678054|ref|ZP_18114899.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|424679974|ref|ZP_18116787.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|424684441|ref|ZP_18121157.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|424687903|ref|ZP_18124525.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|424689750|ref|ZP_18126306.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|424694204|ref|ZP_18130609.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|424696292|ref|ZP_18132647.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|424700479|ref|ZP_18136665.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|424704746|ref|ZP_18140840.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|424706937|ref|ZP_18142930.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|424718163|ref|ZP_18147420.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|424720446|ref|ZP_18149548.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|424726078|ref|ZP_18154762.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|424734075|ref|ZP_18162625.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|424746066|ref|ZP_18174317.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|424753580|ref|ZP_18181522.1| peptidase, S54 family [Enterococcus faecalis ERV93]
gi|227073134|gb|EEI11097.1| S54 family peptidase [Enterococcus faecalis TX0104]
gi|402352548|gb|EJU87394.1| peptidase, S54 family [Enterococcus faecalis ERV103]
gi|402355193|gb|EJU89971.1| peptidase, S54 family [Enterococcus faecalis ERV116]
gi|402361515|gb|EJU96072.1| peptidase, S54 family [Enterococcus faecalis ERV129]
gi|402362568|gb|EJU97093.1| peptidase, S54 family [Enterococcus faecalis ERV25]
gi|402366516|gb|EJV00887.1| peptidase, S54 family [Enterococcus faecalis ERV31]
gi|402371419|gb|EJV05578.1| peptidase, S54 family [Enterococcus faecalis ERV37]
gi|402373701|gb|EJV07766.1| peptidase, S54 family [Enterococcus faecalis ERV62]
gi|402378181|gb|EJV12058.1| peptidase, S54 family [Enterococcus faecalis ERV41]
gi|402381183|gb|EJV14896.1| peptidase, S54 family [Enterococcus faecalis ERV63]
gi|402382489|gb|EJV16152.1| peptidase, S54 family [Enterococcus faecalis ERV68]
gi|402386145|gb|EJV19654.1| peptidase, S54 family [Enterococcus faecalis ERV65]
gi|402389794|gb|EJV23175.1| peptidase, S54 family [Enterococcus faecalis ERV73]
gi|402390594|gb|EJV23928.1| peptidase, S54 family [Enterococcus faecalis ERV81]
gi|402393308|gb|EJV26536.1| peptidase, S54 family [Enterococcus faecalis ERV72]
gi|402397911|gb|EJV30902.1| peptidase, S54 family [Enterococcus faecalis ERV85]
gi|402403870|gb|EJV36518.1| peptidase, S54 family [Enterococcus faecalis ERV93]
Length = 236
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L +
Sbjct: 56 VAQNHEYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGI 104
>gi|239916634|ref|YP_002956192.1| hypothetical protein Mlut_00720 [Micrococcus luteus NCTC 2665]
gi|239837841|gb|ACS29638.1| uncharacterized membrane protein [Micrococcus luteus NCTC 2665]
Length = 313
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 22/126 (17%)
Query: 82 HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC 141
HL NM++L + GR LE GW +FL+L + V +++ + + +D +
Sbjct: 152 HLLLNMLALWVIGRVLEPALGWWRFLALYVLSAVGGAVFALWV--------SDPLQPVVG 203
Query: 142 AIGFSAVLFAMKTILTRLQPDAYQQI---LNINVKAIYAPWFELIIIYLLVPNASFKGHL 198
A G +FA +LTR++ + I + +N ++ L+P +++ H+
Sbjct: 204 ASGAVYGMFAALFLLTRVRGGQVRSIAVLIGLN-----------LVFSFLLPGVAWQVHV 252
Query: 199 SGILVG 204
G+L G
Sbjct: 253 GGLLTG 258
>gi|56552510|ref|YP_163349.1| rhomboid family protein [Zymomonas mobilis subsp. mobilis ZM4]
gi|56544084|gb|AAV90238.1| Rhomboid family protein [Zymomonas mobilis subsp. mobilis ZM4]
Length = 212
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 19/153 (12%)
Query: 26 IPPA--TLGLVFLQSMVYLNIF----RKPWSTLDVCISA-----DAVIQQRDYKRLILSA 74
+PPA T LV L S V+L F + W+ I A ++ + + LSA
Sbjct: 3 LPPARATTVLVILTSGVWLTTFLLKIQDLWAIKAGFIPARLHGWESGVPSLPFWITPLSA 62
Query: 75 -FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
F HG MH+ +NMV L GR +E I G KFL L + + ++S ++ L Y
Sbjct: 63 TFAHGGLMHIAFNMVMLAFCGRYVEMIIGSRKFLWLYV-IGAYSSAFFQYLFY------P 115
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ 166
++ + A G + LF +L +P +
Sbjct: 116 NSQDPMIGASGAISTLFGAYAVLFGREPQIFAS 148
>gi|317488063|ref|ZP_07946642.1| rhomboid family protein [Eggerthella sp. 1_3_56FAA]
gi|316912835|gb|EFV34365.1| rhomboid family protein [Eggerthella sp. 1_3_56FAA]
Length = 279
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
D R + F H D MHL +NMV+L G LE+ G G +L+L
Sbjct: 104 DLYRFVTPMFLHMDLMHLGFNMVALYSVGEVLERTLGRGNYLAL 147
>gi|422727749|ref|ZP_16784179.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
gi|315151706|gb|EFT95722.1| peptidase, S54 family protein [Enterococcus faecalis TX0012]
Length = 236
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L +
Sbjct: 56 VAQNHEYWRFITPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGI 104
>gi|451927292|gb|AGF85170.1| membrane protein [Moumouvirus goulette]
Length = 165
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 71 ILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY 130
+L F H + HL N +SL LE + G +F +IF+ + +S+ I++
Sbjct: 33 LLRTFYHANLEHLLANSISL-YSLSFLEDLMGHKQFAMAIIFIWIVSSI-------ILYI 84
Query: 131 ITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVP 190
I +GFS V+F + I Y L I+ L++P
Sbjct: 85 IHALIPSRKVYTVGFSGVIFGLIVI--------YYMSLGQGAGITLTGLVVSILPQLVIP 136
Query: 191 NASFKGHLSGILVGLTY-TDTPI 212
SF+GHLSGI+ GL Y T PI
Sbjct: 137 GISFEGHLSGIIAGLIYITLFPI 159
>gi|313677402|ref|YP_004055398.1| rhomboid family protein [Marivirga tractuosa DSM 4126]
gi|312944100|gb|ADR23290.1| Rhomboid family protein [Marivirga tractuosa DSM 4126]
Length = 302
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
+I AF H H+ NM+ L G + + G K ++L + + ++ +IL ++
Sbjct: 72 IITYAFSHAGFFHILMNMLVLYWFGMLVSQYLGSAKLVNLYVLGALAGAVIFILAYNLIP 131
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL---NINVKAIYAPWFELIIIY 186
++ + T+ +G SA ++A+ T L PD ++ + +K I A + L ++
Sbjct: 132 FLADRTTS---GMVGASAAVYAVATASATLLPDHRFHLIFIGPVKIKYIVAVYIILSLLN 188
Query: 187 LLVPNASFK-GHLSGILVGLTY 207
PNA HL G +G Y
Sbjct: 189 SAGPNAGGNLAHLGGAGIGFLY 210
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 20/159 (12%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
A + ++ RLI + F H +H+ +NM +L++ G LE + G +FL L + S
Sbjct: 116 AGVAGGEFYRLITAMFLHASVLHIVFNMWALLVVGAPLEALLGRLRFLVLYFLAGLGGST 175
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
L A +G S +F + L + + LN +++ I
Sbjct: 176 AVYLFA-----------PRGSATLGASGAIFGLFAALF-----VFGRRLNFDIRPIGLVI 219
Query: 180 FELIIIYLLVPNASFKGHLSGILVG----LTYTDTPIGW 214
+ + ++ S++GH+ G+L G ++ P W
Sbjct: 220 VINLALTFVLSGVSWQGHIGGLLSGGALAAAWSYAPRAW 258
>gi|313884239|ref|ZP_07818005.1| peptidase, S54 family [Eremococcus coleocola ACS-139-V-Col8]
gi|312620686|gb|EFR32109.1| peptidase, S54 family [Eremococcus coleocola ACS-139-V-Col8]
Length = 229
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R++ + F H HL +NM++L G +LE+I G KF
Sbjct: 50 VFQNHEYWRILSATFVHIGMSHLLFNMMTLYFMGPELEEILGHIKF-------------- 95
Query: 121 YILLAYIVFYITNDTSELSH---CAIGFSAVLFAMKT---ILTRLQPDAY 164
LL Y++ I + + L+ + G S LF M +L + PD++
Sbjct: 96 --LLIYLIAGIGGNLTSLAFNTGVSAGASTALFGMFAAFIVLAIIHPDSH 143
>gi|417932692|ref|ZP_12576030.1| peptidase, S54 family [Propionibacterium acnes SK182B-JCVI]
gi|340774328|gb|EGR96815.1| peptidase, S54 family [Propionibacterium acnes SK182B-JCVI]
Length = 302
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 69 RLILSAFEHGDDM-HLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
RL+ S F H + H+ +NM +L + GR LE G +FL+ + + + L+A
Sbjct: 128 RLVTSMFGHALSIFHIGFNMYALWVLGRSLEPFLGRARFLAAYLMSGLGGGALFCLMATA 187
Query: 128 VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELII--- 184
T + +G S +F + +L + Q+ L ++ + + W L I
Sbjct: 188 SGTGT-ILPNVDDGVVGASGAIFGLFGVLLIV-----QRRLGVSTREL---WIVLAINAA 238
Query: 185 IYLLVPNASFKGHLSGILVGL 205
+ L + S++ HL G L G+
Sbjct: 239 LLLFISGISWQAHLGGFLTGI 259
>gi|257060526|ref|YP_003138414.1| rhomboid family protein [Cyanothece sp. PCC 8802]
gi|256590692|gb|ACV01579.1| Rhomboid family protein [Cyanothece sp. PCC 8802]
Length = 198
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V+ Q + RL+ + F H +HL+ NM+ L GR +E + G F L+I+ F S
Sbjct: 45 VVVQGEVWRLLTANFLHYSWLHLFVNMIGLYFLGRLVELKF--GVFRYLIIY---FVSGL 99
Query: 121 YILLAYIVFYI-TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
+ A+ F I TNDT + A G A++ + +I + +Q+ I + +
Sbjct: 100 GAMAAFTYFAITTNDTDYILLGASG--AIMGLVGSITALFLQNFWQERSRIATRRLQFIL 157
Query: 180 FEL---IIIYLLVPNASFKGHLSGILVG 204
+ + +P SF HL G+++G
Sbjct: 158 LSIGLQFVFDFFIPEISFLSHLFGLIIG 185
>gi|386345548|ref|YP_006041712.1| hypothetical protein STH8232_2117 [Streptococcus thermophilus JIM
8232]
gi|339279009|emb|CCC20757.1| hypothetical protein STH8232_2117 [Streptococcus thermophilus JIM
8232]
Length = 224
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI F H H +NM++L GR E+I+G +FL L + V + A+ +
Sbjct: 60 RLITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGN------AFTL 113
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ N A G S LF + + + ++ +LN + A +I L
Sbjct: 114 LFTPNV------IAAGASTSLFGLFAAIVIIGYYSHSPLLNQLGRNYLALIVINLIFNLF 167
Query: 189 VPNASFKGHLSGILVG 204
P+ GHL G++ G
Sbjct: 168 TPSVGITGHLGGLVGG 183
>gi|297621662|ref|YP_003709799.1| Rhomboid family protein [Waddlia chondrophila WSU 86-1044]
gi|297376963|gb|ADI38793.1| Rhomboid family protein [Waddlia chondrophila WSU 86-1044]
gi|337292982|emb|CCB90980.1| Rhomboid family protein [Waddlia chondrophila 2032/99]
Length = 387
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 36/169 (21%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
I++ + RL H D HL++NM+ L++ G Q+EK G +F + +
Sbjct: 230 IREGEVWRLFTPILLHADIFHLFFNMIWLLVLGVQMEKRLG------------IFRMILF 277
Query: 122 ILLAYIVFYITNDTSELSHCA--IGFSAVLFAMKTILTRLQPDAYQQ----------ILN 169
IL++ I+N L IGFS VL M + Q +A + ++
Sbjct: 278 ILISAA---ISNTAQYLMSGPDFIGFSGVLCGMIVFVWIRQKNAPWEGYHLQSSTMAFIS 334
Query: 170 INVKAIYAPWFELIIIYL-------LVPNASFKGHLSGILVGLTYTDTP 211
I V A+ +LI L L P + HLSG L GL P
Sbjct: 335 IFVGAMAG--IQLISFALELMGQPSLAPPIANTAHLSGALAGLIMAKVP 381
>gi|224113005|ref|XP_002316359.1| hypothetical protein POPTRDRAFT_659857 [Populus trichocarpa]
gi|222865399|gb|EEF02530.1| hypothetical protein POPTRDRAFT_659857 [Populus trichocarpa]
Length = 275
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
+ + L++ G+ LE ++G +FL + + TS+ + A ++YIT + L GF
Sbjct: 74 STLCLLIMGKLLEPVWGSKEFLKFIFIVNFLTSVCVFITAISLYYITRQENYLYMPISGF 133
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
+L ++ PD +L + K WF +++ + + + F + L +
Sbjct: 134 QGILAGFLVGTKQIIPDQELSLLRLKAK-----WFPSLMLLIAIVISFFTAESAKYLPTI 188
Query: 206 TYTDTPIGW-GLDYVVDKCQEMINGEEQEDMG 236
+ T + W L Y K + + G+ +D
Sbjct: 189 IF-GTYMSWIYLRYFHRKPETKLRGDPSDDFA 219
>gi|227544150|ref|ZP_03974199.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|338202576|ref|YP_004648721.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
gi|154705524|gb|ABS84188.1| rhomboid family protein [Lactobacillus reuteri]
gi|227185866|gb|EEI65937.1| S54 family peptidase [Lactobacillus reuteri CF48-3A]
gi|336447816|gb|AEI56431.1| rhomboid family integral membrane protein [Lactobacillus reuteri
SD2112]
Length = 219
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 26 IPPATLGLVFLQSMVYLNIFRKPWST-----LDVCISADAVIQQRDYKRLILSAFEHGDD 80
+ P TL L+ Q +VY + ST L++ + +I++ ++ RL+ F H
Sbjct: 8 LAPVTLTLIIFQILVYCWLVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGL 67
Query: 81 MHLYYNMVSLILKGRQLEKIYG 102
HL N V+L+ GR +E+ +G
Sbjct: 68 SHLVVNSVTLLYIGRYIEEFFG 89
>gi|257791201|ref|YP_003181807.1| rhomboid family protein [Eggerthella lenta DSM 2243]
gi|257475098|gb|ACV55418.1| Rhomboid family protein [Eggerthella lenta DSM 2243]
Length = 263
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
D R + F H D MHL +NMV+L G LE+ G G +L+L
Sbjct: 88 DLYRFVTPMFLHMDLMHLGFNMVALYSVGEVLERTLGKGSYLAL 131
>gi|302822893|ref|XP_002993102.1| hypothetical protein SELMODRAFT_136510 [Selaginella moellendorffii]
gi|300139102|gb|EFJ05850.1| hypothetical protein SELMODRAFT_136510 [Selaginella moellendorffii]
Length = 290
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
FEH + L +++ ++ G+ LE I+ +I + FT++ L+ ++Y+T+
Sbjct: 48 FEH-TFLGLVSSVLGIVFFGKLLEPIWTSRGMSLFIILVNFFTTITTFALSVFLYYVTSQ 106
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE------LIIIYLL 188
L GFS VL + +L PD ++ I ++ A WF ++YL+
Sbjct: 107 GKYLYVPISGFSGVLAGFLVAVKQLMPD--YELPKIKLR---AKWFPSLLVAFFAVLYLV 161
Query: 189 VPNA 192
VP+A
Sbjct: 162 VPDA 165
>gi|239825780|ref|YP_002948404.1| rhomboid family protein [Geobacillus sp. WCH70]
gi|239806073|gb|ACS23138.1| Rhomboid family protein [Geobacillus sp. WCH70]
Length = 205
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVI 111
I +A +Q +Y RL+ H H+ N +SLIL G LEK+ G KFL L I
Sbjct: 47 IGFNAAVQNGEYWRLVSPLVLHVRFEHMIINSISLILFGPALEKMLGKSKFLLLYI 102
>gi|402298151|ref|ZP_10817865.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
gi|401726654|gb|EJS99873.1| hypothetical protein BalcAV_04560 [Bacillus alcalophilus ATCC
27647]
Length = 249
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 56 ISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
+ + + DY RL+ F H MH+ +N VSLIL G LE++ G +F+ L
Sbjct: 46 VGLNLAVHNGDYWRLVTPIFMHVGFMHVIFNSVSLILFGPPLEQMLGKFRFILL 99
>gi|418696708|ref|ZP_13257713.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409955501|gb|EKO14437.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 197
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NMVS G+ LE G +F+
Sbjct: 36 RNKNYYTLLTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFV 80
>gi|363540224|ref|YP_004894693.1| mg642 gene product [Megavirus chiliensis]
gi|448825630|ref|YP_007418561.1| putative rhomboid protein [Megavirus lba]
gi|350611389|gb|AEQ32833.1| putative rhomboid protein [Megavirus chiliensis]
gi|425701565|gb|AFX92727.1| putative rhomboid protein [Megavirus courdo11]
gi|444236815|gb|AGD92585.1| putative rhomboid protein [Megavirus lba]
Length = 163
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 72 LSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYI 131
L + H + HL N +SL LE + G +F +IF+ + +S+ + YI+ I
Sbjct: 34 LRTYYHANIEHLIANSISLYYLSF-LEDLLGHTQFAIAIIFIWLVSSM----ILYIIHAI 88
Query: 132 TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPN 191
+ +GFS V+F + I Y LN N I+ L+VP
Sbjct: 89 MPSRKVYT---VGFSGVIFGLIVI--------YYFSLNQNPGITMTGLIISILPQLVVPG 137
Query: 192 ASFKGHLSGILVGLTYTD 209
SF+GHLSGI+ G+ Y
Sbjct: 138 ISFEGHLSGIIAGVIYVT 155
>gi|326383928|ref|ZP_08205612.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
gi|326197387|gb|EGD54577.1| Rhomboid family protein [Gordonia neofelifaecis NRRL B-59395]
Length = 248
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
Q +Y RL+ S F H +H+ NM+SL L G LE++ G ++L++
Sbjct: 72 QDEYWRLLTSGFLHWSVVHIAMNMISLYLIGADLERVLGPVRYLAV 117
>gi|410096061|ref|ZP_11291051.1| hypothetical protein HMPREF1076_00229 [Parabacteroides goldsteinii
CL02T12C30]
gi|409227132|gb|EKN20033.1| hypothetical protein HMPREF1076_00229 [Parabacteroides goldsteinii
CL02T12C30]
Length = 197
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG------WGKFLSLVIFLTV 115
+++ ++ RLI F H D HL NM + G +EK++G WG FL L +
Sbjct: 35 VKKNEWYRLITHGFVHADMTHLLVNMFTFWSFGTYIEKVFGYLGFGTWG-FLGLYFGGMI 93
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLF 150
F S+Y ++ + Y + + + AI FS +LF
Sbjct: 94 FASIYDLVKHHNDPYYVSIGASGAVSAILFSYILF 128
>gi|403238266|ref|ZP_10916852.1| S54 family peptidase [Bacillus sp. 10403023]
Length = 239
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 20/174 (11%)
Query: 35 FLQSMVYLNIFRKPWST--LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
FL +++L++ P+ T L I + +I + +Y RL+ F H H+ +N SL+L
Sbjct: 27 FLWLLIFLSL---PFGTTLLQQMIGFNFLISEGEYWRLVTPIFVHSGFGHMLFNSFSLVL 83
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSL--YYILLAYIVFYITNDTSELSHCAIGFSAVLF 150
G LE + G KF + + V +L YYI + E +H +G S +F
Sbjct: 84 FGPALESMLGKVKFTVVYLLTGVAANLATYYI-----------EPLEFAH--VGSSGAIF 130
Query: 151 AMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ I + I ++N + I +++ + N + HL G L G
Sbjct: 131 GLFGIYLYMVVFRKDLINHMNAQLITTILVIGLVMTFINSNVNIVAHLFGFLAG 184
>gi|418048760|ref|ZP_12686847.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
gi|353189665|gb|EHB55175.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
Length = 248
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+Y RL+ SAF H +HL +NM +L + G LE G +F + L ++L +L
Sbjct: 75 EYYRLVTSAFMHYGALHLLFNMWALYVIGPPLESWLGRLRFGA----LYALSALGGSVLV 130
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
Y + I T+ S G LF +L + L ++++ + A +I+
Sbjct: 131 YWLAPIGAATAGASGAIFG----LFGATFVLAKH--------LRLDMRWLVAIIVANLIL 178
Query: 186 YLLVPNASFKGHLSGILVG 204
VP+ S++GH+ G++VG
Sbjct: 179 TFTVPSISWQGHIGGLVVG 197
>gi|302787298|ref|XP_002975419.1| hypothetical protein SELMODRAFT_103272 [Selaginella moellendorffii]
gi|300156993|gb|EFJ23620.1| hypothetical protein SELMODRAFT_103272 [Selaginella moellendorffii]
Length = 290
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
FEH + L +++ ++ G+ LE I+ +I + FT++ L+ ++Y+T+
Sbjct: 48 FEH-TFLGLVSSVLGIVFFGKLLEPIWTSRGMSLFIILVNFFTTITTFALSVFLYYVTSQ 106
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL---IIIYLLVPN 191
L GFS VL + +L PD ++ I ++A + P + ++YL+VP+
Sbjct: 107 GKYLYVPISGFSGVLAGFLVAVKQLMPD--YELPKIKLRAKWFPSLLVAFFAVLYLVVPD 164
Query: 192 A 192
A
Sbjct: 165 A 165
>gi|76801230|ref|YP_326238.1| GlpG-like protein [Natronomonas pharaonis DSM 2160]
gi|76557095|emb|CAI48669.1| rhomboid family protein [Natronomonas pharaonis DSM 2160]
Length = 314
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 71 ILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFY 130
++S F HG MHL +N + L G +E+ G KF+ L + + L + + +
Sbjct: 145 VISVFSHGSPMHLLFNAIVLYFFGPLVERQIGSKKFVGLFLASGIIAGLGQVGVGLV--- 201
Query: 131 ITNDTSELSHCAIGFSAVLFAMKTILTRLQPD 162
TSE +G S L A+ +L PD
Sbjct: 202 ----TSE-GVAVLGASGALMAIMGVLAITSPD 228
>gi|261416932|ref|YP_003250615.1| rhomboid family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385791745|ref|YP_005822868.1| rhomboid family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373388|gb|ACX76133.1| Rhomboid family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326940|gb|ADL26141.1| rhomboid family protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 297
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R + F H D MH ++NM+ L + G ++ + G F+S+ F +F +L+ + +
Sbjct: 62 RYVTYMFIHFDFMHFFFNMLMLWMFGSEVAEWMGSRHFVSMYFFCGIFAALFSFFMC--I 119
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+TN+ IG S L + + PD + + I + +I + +L
Sbjct: 120 LGLTNNP------IIGASGALMGVFVAYYKFFPDRVILMFFVIPMRIKNAMWVMIALDIL 173
Query: 189 VPNA----SFKGHLSGILVGLTY 207
N+ + HL G++ G Y
Sbjct: 174 FANSGDMIAHFAHLGGVVAGFLY 196
>gi|433601853|ref|YP_007034222.1| membrane protein [Saccharothrix espanaensis DSM 44229]
gi|407879706|emb|CCH27349.1| membrane protein [Saccharothrix espanaensis DSM 44229]
Length = 286
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
++ RL+ S F H HL NM++L + GR+LE +G +FL+L
Sbjct: 122 EWWRLLTSGFLHYGPAHLGLNMIALYVLGRELEPTFGKIRFLAL 165
>gi|392533728|ref|ZP_10280865.1| rhomboid-like protein [Pseudoalteromonas arctica A 37-1-2]
Length = 361
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 28/194 (14%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWS---TLDVCISADAVIQQRDYKRLILSA-FEHGDDMH 82
P T GL+ L ++++ F P S +D A + + + +L+ F HG MH
Sbjct: 152 PWVTRGLIVLNTLIFALYFLNPSSFSYVIDNFAMTPADLSKGNELWTVLTCVFLHGSIMH 211
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI---LLAYIVFYITNDTSELS 139
L NM L + G LE + G +FL L+Y+ LLA YI + S +
Sbjct: 212 LVGNMYFLYIVGDNLEDVLGHKRFL-----------LWYLACGLLASFASYIVSPMSNIP 260
Query: 140 HC-AIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNA------ 192
A G A LF M I R + + I K + A WF I + + A
Sbjct: 261 GVGASGAIAGLFGMYLIWFRHASLTFMFV--IYQKKLSAVWFFAIWLGFNIFGAVTGPDG 318
Query: 193 -SFKGHLSGILVGL 205
+ H+ G + GL
Sbjct: 319 IDYGAHIGGFIAGL 332
>gi|284028038|ref|YP_003377969.1| Rhomboid family protein [Kribbella flavida DSM 17836]
gi|283807331|gb|ADB29170.1| Rhomboid family protein [Kribbella flavida DSM 17836]
Length = 246
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL SAF H H++ N+ L G LE++ G +F+ L + S+ LLA V
Sbjct: 107 RLFTSAFTHLQIFHIFSNLFMLYQVGPLLEQMLGRLRFVLLYFLSALGGSIAVWLLANPV 166
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ T S +G L +++R + ++V I A +I L
Sbjct: 167 ----SSTLGASGAVLGLVGALL----VISRAR--------GMDVTWILAYVAITAVISFL 210
Query: 189 VPNASFKGHLSGILVG 204
PN S++GHL G L G
Sbjct: 211 FPNISWQGHLGGFLAG 226
>gi|365875578|ref|ZP_09415106.1| hypothetical protein EAAG1_04857 [Elizabethkingia anophelis Ag1]
gi|442588843|ref|ZP_21007653.1| hypothetical protein D505_13495 [Elizabethkingia anophelis R26]
gi|365756837|gb|EHM98748.1| hypothetical protein EAAG1_04857 [Elizabethkingia anophelis Ag1]
gi|442561601|gb|ELR78826.1| hypothetical protein D505_13495 [Elizabethkingia anophelis R26]
Length = 221
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 9/154 (5%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
A+ + ++Y RL+ S F H D MHL +NM++L + +G F+ + + +
Sbjct: 36 GAIQRNKEYIRLLTSGFLHADIMHLLFNMLTLFFFSGIVIDYFGKVGFVLIYFGAIIAGN 95
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L+ + + Y N + G S +LFA + L + + I A
Sbjct: 96 LFSLFI-----YKNNPMYSAIGASGGVSGILFAAIAMNPYLGIGFFFIPIPIPGYIFGAL 150
Query: 179 WFELIIIYLLVP----NASFKGHLSGILVGLTYT 208
+F + +L P N HL G +VGL Y
Sbjct: 151 YFGYSVYMMLNPKEWDNLGHAAHLGGSVVGLVYA 184
>gi|377809821|ref|YP_005005042.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056562|gb|AEV95366.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
Length = 229
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 28/155 (18%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+++ DY + S F H HL NMV+L GR LE I G KFL+ + VF +
Sbjct: 53 ESIKNGSDYFSIFASMFIHIGIEHLVLNMVTLYFLGRILEAIMGHWKFLATYLLAGVFGN 112
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFA------MKTILTRLQP---DAYQQILN 169
L + Y N + + G S +F M I R P QQ+L
Sbjct: 113 L-------VSLYFANPQT----ISAGASGAIFGIIGVWLMLAITFRSVPYLAQMGQQMLI 161
Query: 170 INVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
+ + + L P+ HL G+L G
Sbjct: 162 FTILGLIGGF--------LGPDVDIAAHLGGVLAG 188
>gi|227496597|ref|ZP_03926875.1| rhomboid family protein [Actinomyces urogenitalis DSM 15434]
gi|226833877|gb|EEH66260.1| rhomboid family protein [Actinomyces urogenitalis DSM 15434]
Length = 282
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 30 TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVS 89
T GL+ +VY+ +P T D + + Q R + +AF HG MHL +NM +
Sbjct: 80 TTGLIAACVVVYVIQMLRPSLTTDFGFAPVVALSQ--PWRFLSTAFLHGSLMHLAFNMWA 137
Query: 90 LILKGRQLEKIYGWGKFLSL 109
L + G LE + G +F +L
Sbjct: 138 LWVCGSALEPLLGRWRFAAL 157
>gi|406885514|gb|EKD32686.1| hypothetical protein ACD_77C00001G0004 [uncultured bacterium]
Length = 226
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 65 RDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
R Y + + F HG+ +HL++NM SLI+ G LE+++G KF
Sbjct: 53 RPY-QFVTHMFMHGNFIHLFFNMYSLIIFGVVLEQVWGSKKFF 94
>gi|399516625|ref|ZP_10758222.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
gi|398648534|emb|CCJ66249.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
Length = 227
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
Y RLI F H MH+ NM++L G E +G KFL L F + +++ L
Sbjct: 56 DSQYWRLITPIFLHAGFMHIATNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYL 115
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
+ N S +G S LF + L AYQ + NV+A+ + +
Sbjct: 116 FS------PNTIS------VGASTALFGL---FGSLMIFAYQYRHDPNVRALGSMMGLFV 160
Query: 184 IIYLL----VPNASFKGHLSGILVGLTY 207
++ LL N GHL G + G+ +
Sbjct: 161 LLTLLSSFSATNIDLWGHLGGFIGGVMF 188
>gi|284040579|ref|YP_003390509.1| rhomboid family protein [Spirosoma linguale DSM 74]
gi|283819872|gb|ADB41710.1| Rhomboid family protein [Spirosoma linguale DSM 74]
Length = 207
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
V + Y RLI S F H D HL++NM+SL G +E+++
Sbjct: 35 VASRGQYYRLITSGFLHADWGHLFFNMLSLYFFGGFIEQVF 75
>gi|336114379|ref|YP_004569146.1| rhomboid family protein [Bacillus coagulans 2-6]
gi|335367809|gb|AEH53760.1| Rhomboid family protein [Bacillus coagulans 2-6]
Length = 355
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I + Y RLI+ F H MHL+ N +SL G +E+IYG +F +L+ FT
Sbjct: 183 NPLIMEGQYWRLIMPVFIHIGIMHLFMNSLSLYYIGPLVERIYGKARF-ALIYLFAGFTG 241
>gi|294656613|ref|XP_458911.2| DEHA2D10252p [Debaryomyces hansenii CBS767]
gi|218511831|sp|Q6BSA9.2|RBD2_DEBHA RecName: Full=Rhomboid protein 2
gi|199431606|emb|CAG87065.2| DEHA2D10252p [Debaryomyces hansenii CBS767]
Length = 286
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D RL H H N+V L E+ G TVFT + +LA
Sbjct: 61 DLNRLSFYLLFHRGFTHWLLNVVGLFSPLAIFERTNG-----------TVFTGVTLNVLA 109
Query: 126 YIV---FYITNDTSELSHCAIGFSAVLFAMKTILT----RLQPDAYQ---QILNINVKAI 175
F I + IG S V+F+ + + P Y Q +++ +
Sbjct: 110 VTAGLQFCIVGKLLYPNTQVIGLSGVVFSFMSFMAYKEHHTTPVIYTFKYQGSEVSIPTL 169
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGI----LVGLTYTD--TPIGWGLDYVVDKCQEMING 229
Y+P+ LI+ +L+P +SF GHL+GI L+ L Y P + ++ K Q IN
Sbjct: 170 YSPFIFLIVCMVLIPGSSFWGHLAGISSGYLLALGYIKFLYPPSKAILFIERKLQTPINA 229
Query: 230 EE------QEDMGEEQK 240
+E+ EQ+
Sbjct: 230 LRSLVVYYKEEEAIEQR 246
>gi|411003693|ref|ZP_11380022.1| hypothetical protein SgloC_12861 [Streptomyces globisporus C-1027]
Length = 301
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 42 LNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
L + + W S + V + + Y RL+ S F H + +HL +NM+ L G QLE
Sbjct: 113 LTLLGRAWDPSPPPGSVEGVAEGQWY-RLVTSMFLHQEVVHLGFNMLGLWWLGGQLEAAL 171
Query: 102 GWGKFLSLVIFLTVFTSLYYILLA 125
G ++L+L + + S LLA
Sbjct: 172 GRSRYLALYLLSGLAGSALTYLLA 195
>gi|398341143|ref|ZP_10525846.1| intramembrane serine protease [Leptospira kirschneri serovar Bim
str. 1051]
Length = 198
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NMVS G+ LE G +F+
Sbjct: 37 RNKNYYTLLTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFI 81
>gi|218192864|gb|EEC75291.1| hypothetical protein OsI_11637 [Oryza sativa Indica Group]
Length = 321
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L++ G+ LE ++G + L + + + TS + A I++YIT L GF
Sbjct: 75 SIVGLLVLGKVLEPLWGAKELLKFIFLVNLSTSACVFVTAIILYYITQQEIYLYTPLSGF 134
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
VL + ++ PD + +N+KA + P
Sbjct: 135 YGVLSGFLVGIKQILPDQEITLFLLNIKAKWIP 167
>gi|332686104|ref|YP_004455878.1| GlpG protein [Melissococcus plutonius ATCC 35311]
gi|332370113|dbj|BAK21069.1| GlpG protein, membrane protein of glp regulon [Melissococcus
plutonius ATCC 35311]
Length = 234
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
++ ++Y RL F H MHL NMV+L G Q+E+IYG ++L +
Sbjct: 54 ILINKEYWRLFTPIFLHIGWMHLILNMVTLYYIGEQIERIYGHWRYLGI 102
>gi|171057356|ref|YP_001789705.1| rhomboid family protein [Leptothrix cholodnii SP-6]
gi|170774801|gb|ACB32940.1| Rhomboid family protein [Leptothrix cholodnii SP-6]
Length = 200
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
AF HGD +HL++NM L + G ++E I+G
Sbjct: 52 AFLHGDPLHLFFNMFGLWMFGSEIEMIWG 80
>gi|404486870|ref|ZP_11022058.1| hypothetical protein HMPREF9448_02509 [Barnesiella intestinihominis
YIT 11860]
gi|404335924|gb|EJZ62390.1| hypothetical protein HMPREF9448_02509 [Barnesiella intestinihominis
YIT 11860]
Length = 232
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKP---------WSTLDVCISADAVIQQRDYKRLILSA 74
+IPP TL L+ + +V+L P W L + D + Q LI
Sbjct: 8 GSIPPVTLNLIIVNFIVWLAALTLPKIAGINLNYWLGLHYFAADDFNVVQ-----LITYM 62
Query: 75 FEHGDDM--HLYYNMVSLILKGRQLEKIYGWGKFL 107
F H H+++NM S+ + GR LE ++G +FL
Sbjct: 63 FLHDTSGIEHIFFNMFSVFMFGRTLEAVWGGKRFL 97
>gi|386087436|ref|YP_006003310.1| hypothetical protein [Streptococcus thermophilus ND03]
gi|312279149|gb|ADQ63806.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus thermophilus ND03]
Length = 224
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI F H H +NM++L GR E+I+G +FL L + V + A+ +
Sbjct: 60 RLITPIFVHIGVEHFLFNMLTLYFMGRMAEQIFGTLRFLGLYLLAGVMGN------AFTL 113
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
+ N A G S LF + + + ++ +LN + A +I L
Sbjct: 114 LFTPNV------IAAGASTSLFGLFAAIVIIGYYSHSPLLNQLGRNYLALIVINLIFNLF 167
Query: 189 VPNASFKGHLSGILVG 204
P+ GHL G++ G
Sbjct: 168 TPSVGITGHLGGLVGG 183
>gi|309792360|ref|ZP_07686828.1| Rhomboid family protein [Oscillochloris trichoides DG-6]
gi|308225581|gb|EFO79341.1| Rhomboid family protein [Oscillochloris trichoides DG6]
Length = 240
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ +I Y RL+ + F HG +H+ +N +L G + E+IYG +FL+L + S
Sbjct: 53 NELIAAGAYWRLLSATFLHGSLIHILFNGYALYALGPETERIYGTRRFLALYFLAGLGGS 112
Query: 119 LYYILLA 125
L LL+
Sbjct: 113 LASYLLS 119
>gi|317127070|ref|YP_004093352.1| rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
gi|315472018|gb|ADU28621.1| Rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
Length = 249
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
R++ F HG MHL +N SL L G LEK+ G GK L
Sbjct: 61 RIVTPIFLHGSIMHLLFNCFSLFLFGPALEKMLGKGKLL 99
>gi|158337464|ref|YP_001518639.1| rhomboid family protein [Acaryochloris marina MBIC11017]
gi|158307705|gb|ABW29322.1| rhomboid family protein [Acaryochloris marina MBIC11017]
Length = 537
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Query: 51 TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLV 110
TL I ++ V D+ RL+ +AF H HL NM L L G +EK+ G +F+
Sbjct: 365 TLGALIPSEVVAG--DWWRLLAAAFLHFGIEHLSLNMFGLGLLGPFVEKMLGTWRFIVSY 422
Query: 111 IFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI 170
+ + + L LL ++T S +G A++ + R Q ++
Sbjct: 423 LMTAIGSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQMRIIRQQSS---KVAAT 479
Query: 171 NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
++ I +I + P SF GH SG+++G
Sbjct: 480 RLRLIGLFVVIQMIFDAVTPQVSFIGHASGLVIG 513
>gi|50307309|ref|XP_453633.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74606352|sp|Q6CR06.1|RBD2_KLULA RecName: Full=Rhomboid protein 2
gi|49642767|emb|CAH00729.1| KLLA0D12804p [Kluyveromyces lactis]
Length = 271
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYI 122
D R+ L H HL++N++S E+ +G G L+L L VFT++ Y
Sbjct: 53 DLNRISLYPLAHLSFFHLFFNVISTFSMIVMFEESHGTLYTGVILNL---LAVFTAIPYC 109
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVL--FAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
L+ ++F E+ + F + L FA+K R ++ + +Y P
Sbjct: 110 LIGSLLF----PNVEIGGASGWFFSFLGYFAVKESRVR---NSVMITSTFSFPTLYFPVA 162
Query: 181 ELIIIYLLVPNASFKGHLSGILVG 204
L + LL P +S GH G+L+G
Sbjct: 163 LLFVTALLAPGSSLPGHAIGLLLG 186
>gi|295107889|emb|CBL21842.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus obeum A2-162]
Length = 200
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 28 PATLGLVFLQSMVYLNI-----FRKPWSTLDVCISA--DAVIQQRDYKRLILSAFEHGDD 80
P T+GL+ + +V+L + + LD C +A +I+ +Y RL F H
Sbjct: 11 PVTVGLILINIIVFLAVEFTGSSQNTIHMLD-CGAAYTPMIIEGGEYYRLFTCMFLHFGI 69
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFL 107
HL NM+ L + G +LE++ G KFL
Sbjct: 70 EHLLNNMLVLFVLGSRLERVIGKIKFL 96
>gi|289662960|ref|ZP_06484541.1| hypothetical protein XcampvN_07693 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289670187|ref|ZP_06491262.1| hypothetical protein XcampmN_17269 [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 202
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG--WGKFLSLVIFLTVFT 117
AV + Y RL+ F H D HL +NMV+L GR +E + G L+ +F
Sbjct: 33 AVDKHNQYDRLVTYGFIHADLGHLVFNMVTLFFFGRVIENVMAELTGSVLTYPLFY---- 88
Query: 118 SLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAI 175
L ++++ + Y+ N + ++ ++G S + A+ LQP +L I AI
Sbjct: 89 -LAALVVSILPSYLKNQKNP-NYLSLGASGAVSAVLFAFILLQPWTIILVLFIPAPAI 144
>gi|261402576|ref|YP_003246800.1| rhomboid family protein [Methanocaldococcus vulcanius M7]
gi|261369569|gb|ACX72318.1| Rhomboid family protein [Methanocaldococcus vulcanius M7]
Length = 222
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+LI S F H HL NM L G LE++ G K++ + + + +L YIL +I
Sbjct: 55 QLITSIFMHATITHLLLNMFVLFFFGTYLERLIGAKKYILVFLISGIVGNLAYILYCHI- 113
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVK---AIYAPWFELIII 185
S L ++G S +F + L L P I I V + F LI +
Sbjct: 114 -----TGSYLP--SVGSSGAIFGVMGALAILHPRLKVVIFPIPVPISIRVAVGLFALIDL 166
Query: 186 YLLVPNASFK------GHLSGILVGLTYTDT 210
LL +FK HL+G+L GL + +
Sbjct: 167 ILL--PYTFKTGIAHISHLAGLLTGLIFGEV 195
>gi|381179391|ref|ZP_09888244.1| Rhomboid family protein [Treponema saccharophilum DSM 2985]
gi|380768686|gb|EIC02672.1| Rhomboid family protein [Treponema saccharophilum DSM 2985]
Length = 229
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL-----YYILLAYIV 128
F HG+ HL++NM+ L+ G Q+E+ G +F+ + + + V + L YY L AY++
Sbjct: 69 FMHGNIQHLFFNMLGLLFFGMQVERALGSKEFVMMYLVVGVLSGLFSVGVYYALGAYMI 127
>gi|358374890|dbj|GAA91478.1| rhomboid family membrane protein [Aspergillus kawachii IFO 4308]
Length = 516
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 32/161 (19%)
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVF 116
S D + R I+ F H +H+ +N++ + G +E++ GW ++
Sbjct: 235 SLDDTPAPNQWFRFIIPMFIHTGFIHIGFNLIVQLTMGVDMERMIGWWRYF--------- 285
Query: 117 TSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI--NVKA 174
L Y+ F + + + + G S LF + + IL++ K
Sbjct: 286 --LVYVASGIWGFVLGGNYAGQGEASCGCSGALFGILALF----------ILDLLYTWKD 333
Query: 175 IYAPWFELIIIYL---------LVPNASFKGHLSGILVGLT 206
+PW ELII+ L L+P H+ G ++GL
Sbjct: 334 RASPWVELIIMILGIAVSFVLGLLPGLDNFAHIGGFIMGLA 374
>gi|323453274|gb|EGB09146.1| hypothetical protein AURANDRAFT_63657 [Aureococcus anophagefferens]
Length = 1186
Score = 37.7 bits (86), Expect = 4.1, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 18/182 (9%)
Query: 28 PATLGLVFLQSMVY-LNIFRKPWSTLDVC--ISADAVIQQRDYKRLILSAFEHGDDMHLY 84
P LG F+ V+ +N+ + C + + Y RL+ H HL
Sbjct: 863 PVVLGFAFVCCAVFFVNVVAPGTNVFVACPPFRMASPLNPLTYLRLLTHTVGHTGYDHLK 922
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIG 144
NMV+L+L G EK +G L + +++ V +++ ++ L Y +G
Sbjct: 923 GNMVNLLLVGPASEKEFGSMNLLKIFLYVAVSSAVAHMALGPANGY-----------QLG 971
Query: 145 FSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF--ELIIIYLLVPNASFKGHLSGIL 202
S V+FA+ IL A+ ++ + W E+ + S HLSG +
Sbjct: 972 ASGVVFAL--ILLNSLLSAHSGVVPLTFLLTAGLWVSDEVFRFFFARDQVSHVAHLSGAV 1029
Query: 203 VG 204
VG
Sbjct: 1030 VG 1031
>gi|449017499|dbj|BAM80901.1| unknown rhomboid family protein [Cyanidioschyzon merolae strain
10D]
Length = 458
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF------ 112
+A I+ ++ RL F HG+ +HL N+ SL G Q+E YG ++ +L +
Sbjct: 283 NAAIRTGEWYRLFTPLFLHGNTLHLIVNLSSLKSLGPQIEATYGHRRYAALYLLSGLTGN 342
Query: 113 -----------LTVFTSLYYILLAYIVFYITN 133
+ ++++ ++ A FY++N
Sbjct: 343 LFSFFFNTAPSVGASSAIFGLIGAMAAFYVSN 374
>gi|412988740|emb|CCO15331.1| Rhomboid family protein [Bathycoccus prasinos]
Length = 249
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
+ Y RL+ SAF HG +HL+ NM S+ G +E+I+G
Sbjct: 108 VSNGQYYRLLTSAFLHGGLVHLFVNMYSVNAIGSAVERIFG 148
>gi|440748391|ref|ZP_20927644.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
gi|436483215|gb|ELP39283.1| Rhomboid family protein [Mariniradius saccharolyticus AK6]
Length = 517
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D+ RL+ S F HG MHL+ N+ L++ +E ++G K+ F+ F S LA
Sbjct: 363 DWWRLVSSMFLHGGIMHLFLNIYGLVIAALFVEPVFGRIKY-----FILYFASGICGSLA 417
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAM-KTILTRLQPDAYQQILNINVKAIYAPWFELII 184
I +Y ++G S +F + +L L +A+ + I + P+ + +
Sbjct: 418 SIYWYENT-------ISVGASGAIFGLYGAVLGLLLTNAFPKDGKIGILMFIGPYVGVNL 470
Query: 185 IYLLVPNASFKGHLSGILVGLTY 207
+ L H+ G++ G +
Sbjct: 471 LVGLTGGIDNAAHIGGLVSGAVF 493
>gi|417762000|ref|ZP_12409996.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417769446|ref|ZP_12417362.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417775235|ref|ZP_12423091.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418673108|ref|ZP_13234433.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|418680768|ref|ZP_13242007.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418690065|ref|ZP_13251183.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418716234|ref|ZP_13276248.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|418726000|ref|ZP_13284612.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|421123434|ref|ZP_15583714.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|400327490|gb|EJO79740.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400360788|gb|EJP16758.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|409942189|gb|EKN87810.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|409948596|gb|EKN98584.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409960781|gb|EKO24534.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410343485|gb|EKO94716.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410574930|gb|EKQ37956.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410579891|gb|EKQ47727.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|410787917|gb|EKR81646.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455669206|gb|EMF34365.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 197
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 20/155 (12%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ ++Y L S F H D MHL +NMVS G+ LE G +F V L I
Sbjct: 36 RNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRF--------VLFYLGTI 87
Query: 123 LLAYIVFYITN-DTSELSHCAI--GFSAVLFAMKTILTRLQPDAYQQILNINVK-AIYAP 178
L+ ++ + N D S G VLFA TIL Y + I + A+YA
Sbjct: 88 LITSVISWRKNLDNPHYSTLGASGGVCGVLFA--TILFYPSLSLYMMFIPIPIPGAVYAV 145
Query: 179 WFELIIIYLLVPNASFKG-----HLSGILVGLTYT 208
+ LI Y + + G HL G L G+ +
Sbjct: 146 LY-LIYTYFSSKSGAADGINHDAHLWGALCGIAFA 179
>gi|384418691|ref|YP_005628051.1| integral membrane protein [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353461604|gb|AEQ95883.1| integral membrane protein [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 232
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + + +L+A+
Sbjct: 64 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVACAGVCQLLMAW 121
>gi|418711617|ref|ZP_13272374.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|421117141|ref|ZP_15577510.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410011270|gb|EKO69392.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410768103|gb|EKR43359.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|456972660|gb|EMG13004.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 197
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 20/155 (12%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
+ ++Y L S F H D MHL +NMVS G+ LE G +F V L I
Sbjct: 36 RNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRF--------VLFYLGTI 87
Query: 123 LLAYIVFYITN-DTSELSHCAI--GFSAVLFAMKTILTRLQPDAYQQILNINVK-AIYAP 178
L+ ++ + N D S G VLFA TIL Y + I + A+YA
Sbjct: 88 LITSVISWRKNLDNPHYSTLGASGGVCGVLFA--TILFYPSLSLYMMFIPIPIPGAVYAV 145
Query: 179 WFELIIIYLLVPNASFKG-----HLSGILVGLTYT 208
+ LI Y + + G HL G L G+ +
Sbjct: 146 LY-LIYTYFSSKSGAADGINHDAHLWGALCGIAFA 179
>gi|389583684|dbj|GAB66418.1| rhomboid-like protease 1 [Plasmodium cynomolgi strain B]
Length = 278
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 18/168 (10%)
Query: 45 FRKPWSTLDVCISADAV--IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
F P +L + + A+ I+Q + RLIL F H + H ++N+ + G LEK YG
Sbjct: 78 FLTPSDSLLITLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYG 137
Query: 103 WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPD 162
K VI L T +Y +L+ V Y S +G V+ + +L +
Sbjct: 138 IVK----VIILYFLTGIYGNILSSSVTYCPIKVGA-STSGMGLLGVVTSELLLLWHIIRH 192
Query: 163 AYQQILNINVKAIYAPWFELI-IIYLLVPNAS---FKGHLSGILVGLT 206
+ I N+ +F LI Y N S GHL G+L G++
Sbjct: 193 RERVIFNV-------IFFSLISFFYYFTFNGSNIDHVGHLGGLLSGIS 233
>gi|294827700|ref|NP_710831.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|386073007|ref|YP_005987324.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|421084984|ref|ZP_15545839.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421102026|ref|ZP_15562636.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|293385543|gb|AAN47849.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|353456796|gb|AER01341.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|410368171|gb|EKP23549.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432377|gb|EKP76733.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|456826075|gb|EMF74445.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456982498|gb|EMG19087.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 197
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L S F H D MHL +NMVS G+ LE G +F+
Sbjct: 36 RNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFI 80
>gi|229917793|ref|YP_002886439.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229469222|gb|ACQ70994.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 241
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ RL+ + F H HL +N +LI+ G +E++ G KF +F +L+
Sbjct: 55 QWYRLVTANFIHLSLGHLLFNSFALIIFGPAMERMVGHVKFALFYVFAGALANLFTYFTV 114
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+FY+ S +GF + + L Q DA + + + A++
Sbjct: 115 SNLFYLQAGASGAILAILGFYVFIGRFRRTLMYSQ-DARLVYIFVAISAVFT-------- 165
Query: 186 YLLVPNASFKGHLSGILVGL 205
L+ N S GH+ G L G
Sbjct: 166 -LIGSNVSLWGHVYGFLAGF 184
>gi|108708260|gb|ABF96055.1| rhomboid protein, putative, expressed [Oryza sativa Japonica Group]
Length = 327
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L++ G+ LE ++G + L + + + TS + A I++YIT L GF
Sbjct: 75 SIVGLLVLGKVLEPLWGAKELLKFIFLVNLSTSACVFVTAIILYYITQQEIYLYTPLSGF 134
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
VL + ++ PD + +N+KA + P
Sbjct: 135 YGVLSGFLVGIKQILPDQEITLFLLNIKAKWIP 167
>gi|340621608|ref|YP_004740060.1| hypothetical protein Ccan_08350 [Capnocytophaga canimorsus Cc5]
gi|339901874|gb|AEK22953.1| Uncharacterized protein C13E711 [Capnocytophaga canimorsus Cc5]
Length = 249
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ + F HGD MHL++NM +L G LE I+G KFL
Sbjct: 48 QFVTHMFMHGDLMHLFFNMYALWAFGTPLESIWGKQKFL 86
>gi|312862457|ref|ZP_07722700.1| peptidase, S54 family [Streptococcus vestibularis F0396]
gi|311102100|gb|EFQ60300.1| peptidase, S54 family [Streptococcus vestibularis F0396]
Length = 224
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 16/167 (9%)
Query: 42 LNIFR--KPWSTLDVCISADAVIQQRDYK--RLILSAFEHGDDMHLYYNMVSLILKGRQL 97
LN F+ P S + A +Q RL+ F H H +NM++L G+
Sbjct: 29 LNGFQATSPLSLFKMGAMYGAFVQYSPLNLWRLVTPIFVHIGVEHFLFNMLALYFMGKMA 88
Query: 98 EKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT 157
E+I+G +FL L + V + + +L V A G S LF + +
Sbjct: 89 EQIFGTLRFLGLYLLAGVMGNAFTLLFTPNV------------IAAGASTSLFGLFAAVV 136
Query: 158 RLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
L ++ +LN + A +I L P+ GHL G++ G
Sbjct: 137 ILGYYSHSPLLNQLGRNYLALIIINLIFNLFTPSVGITGHLGGLVGG 183
>gi|296417707|ref|XP_002838494.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634433|emb|CAZ82685.1| unnamed protein product [Tuber melanosporum]
Length = 179
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 144 GFSAVLF---AMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
G SA++F A + + T L+ Y I + + AP F L+++ +LVP AS GH G
Sbjct: 30 GASALVFTLMANEAVKTFLEKPTYS-IAGYGIPSWMAPIFWLVVVSILVPGASILGHFCG 88
Query: 201 ILVGLTYT 208
+++G Y
Sbjct: 89 LIIGYLYA 96
>gi|417765657|ref|ZP_12413614.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|417786203|ref|ZP_12433899.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|418669212|ref|ZP_13230602.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|418701952|ref|ZP_13262870.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418705885|ref|ZP_13266738.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|421126800|ref|ZP_15587025.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133053|ref|ZP_15593209.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|400352016|gb|EJP04223.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|409950748|gb|EKO05271.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|410022807|gb|EKO89576.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410435655|gb|EKP84786.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410755047|gb|EKR16686.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|410759084|gb|EKR25303.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410764414|gb|EKR35128.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|455789781|gb|EMF41688.1| peptidase, S54 family [Leptospira interrogans serovar Lora str. TE
1992]
Length = 197
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L S F H D MHL +NMVS G+ LE G +F+
Sbjct: 36 RNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFI 80
>gi|421453280|ref|ZP_15902636.1| Integral membrane protein (Rhomboid family) [Streptococcus
salivarius K12]
gi|400181589|gb|EJO15856.1| Integral membrane protein (Rhomboid family) [Streptococcus
salivarius K12]
Length = 224
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 16/167 (9%)
Query: 42 LNIFR--KPWSTLDVCISADAVIQQRDYK--RLILSAFEHGDDMHLYYNMVSLILKGRQL 97
LN F+ P S + A +Q RL+ F H H +NM++L G+
Sbjct: 29 LNGFQATSPLSLFKMGAMYGAFVQYSPLNLWRLVTPIFVHIGVEHFLFNMLTLYFMGKMA 88
Query: 98 EKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT 157
E+I+G +FL L + V + + +L V A G S LF + +
Sbjct: 89 EQIFGTLRFLGLYLLAGVMGNAFTLLFTPNV------------IAAGASTSLFGLFAAVV 136
Query: 158 RLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
L ++ +LN + A +I L P+ GHL G++ G
Sbjct: 137 ILGYYSHSPLLNQLGRNYLALIVINLIFNLFTPSVGITGHLGGLVGG 183
>gi|389861756|ref|YP_006363995.1| Rhomboid Peptidase S54 [Modestobacter marinus]
gi|388483958|emb|CCH85490.1| Rhomboid Peptidase S54 [Modestobacter marinus]
Length = 246
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+Q D+ R +AF H +HL NM+SL++ G +LE++ G G++L
Sbjct: 85 VQIGDWWRPFTAAFLHYGVLHLGLNMLSLLVFGSELERLLGRGRYL 130
>gi|418476663|ref|ZP_13045815.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
gi|371542672|gb|EHN71698.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
Length = 297
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 26/148 (17%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + + RL+ + F H MH+ +NM+SL G LE G ++L+L + L
Sbjct: 129 VAEGQWYRLLTAMFLHTGYMHILFNMLSLWWLGGPLEGALGRARYLALYF----CSGLAG 184
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQQILNINVKAIYA 177
L Y++ +E + ++G S +F A T++ RL D ++ + + ++
Sbjct: 185 SALTYLI-------AEPNQPSLGASGAIFGLFGATATLVRRLNADMRPVVILLAINLVFT 237
Query: 178 -PWFELIIIYLLVPNASFKGHLSGILVG 204
W N +++ H+ G++ G
Sbjct: 238 FTW----------ANIAWQAHVGGLVAG 255
>gi|422866646|ref|ZP_16913264.1| peptidase, S54 family, partial [Enterococcus faecalis TX1467]
gi|329578206|gb|EGG59610.1| peptidase, S54 family [Enterococcus faecalis TX1467]
Length = 214
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R I F H MH+ NMV+L G Q+E IYG ++L + + + +
Sbjct: 34 VAQNHEYWRFINPMFLHIGFMHIILNMVTLYYIGAQVEAIYGHWRYLGIYLLSGIAGN-- 91
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A F N S + A+ F LF IL R D N + + +
Sbjct: 92 ---IASFAFGTPNSVSAGASTAL-FG--LFGAFVILGRHFRD------NPAIMYMVQRYS 139
Query: 181 ELIIIYLLV----PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
I+I LL + GH+ G++ GL + V +E N E+
Sbjct: 140 MFIVINLLFNLFSSSVDMMGHVGGLIGGLLVATA-------FAVPNREEAFNKHER 188
>gi|421109529|ref|ZP_15570046.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410005360|gb|EKO59154.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 198
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L+ S F H D MHL +NMVS G+ LE G +F+
Sbjct: 37 RNKNYYTLLTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFV 81
>gi|302559651|ref|ZP_07311993.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
gi|302477269|gb|EFL40362.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 24/148 (16%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + ++ RL S F H + H+ +NM+SL G LE+ G ++L+L + +
Sbjct: 127 VAEGEWYRLFTSMFTHQEIWHIAFNMLSLWWLGGPLEQALGRVRYLTLYLISGLAGGALT 186
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
LLA + T+ L F LF +L R LN +++ + A
Sbjct: 187 YLLA------SGTTASLGASGAIFG--LFGATAVLMRR--------LNYDMRPVIA---- 226
Query: 182 LIIIYLLV----PNASFKGHLSGILVGL 205
L++I L+ N +++ H+ G++ G+
Sbjct: 227 LLVINLIFTFGWSNIAWQAHIGGLVAGV 254
>gi|381186094|ref|ZP_09893669.1| rhomboid family protein [Flavobacterium frigoris PS1]
gi|379651890|gb|EIA10450.1| rhomboid family protein [Flavobacterium frigoris PS1]
Length = 248
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
Y ++I F HG MH+++NM +L G LE I+G KFL I + +L + +
Sbjct: 44 QYWQVITHMFMHGGYMHIFFNMFALYSFGSALESIWGSKKFLFFYISCGLGAALLHTGIN 103
Query: 126 YIVF 129
Y F
Sbjct: 104 YYYF 107
>gi|296123510|ref|YP_003631288.1| rhomboid family protein [Planctomyces limnophilus DSM 3776]
gi|296015850|gb|ADG69089.1| Rhomboid family protein [Planctomyces limnophilus DSM 3776]
Length = 430
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
++ RL+++ F HGD +HL N++ L G +E+ G F +F +F+ +
Sbjct: 92 EWWRLLVTGFHHGDPVHLTLNLMVLAFLGPLVEQRLGKISFSLFFVFSIIFSVCAELFWG 151
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
V I+ L +G+ + L R PD + I + + A+ A L I+
Sbjct: 152 ENVVGISGGLFAL----LGYLVIARLRDEELARQLPDE-RWIFYLLMAAVMAGLSALEIL 206
Query: 186 YLLVPNASFKGHLSGILVGLTYT 208
N H+SG+LVG+ +
Sbjct: 207 -----NIGNTAHVSGLLVGVAWA 224
>gi|189465270|ref|ZP_03014055.1| hypothetical protein BACINT_01616 [Bacteroides intestinalis DSM
17393]
gi|189437544|gb|EDV06529.1| peptidase, S54 family [Bacteroides intestinalis DSM 17393]
Length = 227
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADA---VIQQRDYKRLILSAFEHGDD 80
+ IP T L+ + +V+L LD+ + + +LI F HG
Sbjct: 2 NAIPTVTKNLLIINVLVFLATIVAQSYGLDLARYLGLHFFLADNFNIAQLITYMFMHGGF 61
Query: 81 MHLYYNMVSLILKGRQLEKIYGWGKFL 107
HL++NM +L + GR LE+++G +FL
Sbjct: 62 THLFFNMFALWMFGRILEQVWGPKRFL 88
>gi|149174671|ref|ZP_01853296.1| probable glpG protein [Planctomyces maris DSM 8797]
gi|148846365|gb|EDL60703.1| probable glpG protein [Planctomyces maris DSM 8797]
Length = 420
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 23/103 (22%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKI---YGWGKFLSLVIFLTVFTSLYYI 122
++ R+++S F HGD +HL +N +++ GR +E + + + FL L ++++ +
Sbjct: 83 EWWRILISGFHHGDVLHLLFNCLAIGFFGRLIEPVMKHWVYAAFLLLATYVSLLPEYF-- 140
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAM---KTILTRLQPD 162
L H +G S FAM +L R+ P+
Sbjct: 141 ---------------LEHYPVGLSGGAFAMFGLLMLLRRIHPE 168
>gi|124513876|ref|XP_001350294.1| rhomboid protease ROM7 [Plasmodium falciparum 3D7]
gi|23615711|emb|CAD52703.1| rhomboid protease ROM7 [Plasmodium falciparum 3D7]
gi|116292569|gb|ABJ97616.1| rhomboid-7 [synthetic construct]
Length = 340
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ V + R+YK + S F H + +HLY+NM SLI R + +Y + + + F++
Sbjct: 167 NDVYKNRNYKTFLTSIFIHKNILHLYFNMSSLISIYRLISNVYTNTQIFLIFLLSGFFSN 226
Query: 119 L--YY---------ILLAYIV--FYITNDTSELSHCAI--GFSAVLFAMKTI-LTRLQPD 162
L YY I L I+ YI + I G S+ ++A+ + +T +
Sbjct: 227 LISYYNHFKKKNEEIYLNDIIDQNYINKKIFNFKNNKIICGSSSAIYALYGMHITHVIFF 286
Query: 163 AYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTPIGW 214
++ IN +Y ++ I LL+ N S H+ G L G ++ I +
Sbjct: 287 YFKNHYVINTSFLYNFFYSFISS-LLLENVSHFNHIVGFLCGFVFSFLIIAF 337
>gi|452910770|ref|ZP_21959448.1| rhomboid family serine protease [Kocuria palustris PEL]
gi|452834191|gb|EME36994.1| rhomboid family serine protease [Kocuria palustris PEL]
Length = 268
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 58 ADAVIQQRDYKRLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
A + Q + +I S F H + HL NM +L + GR LE G G+FL+ V L++
Sbjct: 114 APGYVSQAPWT-VITSGFSHSMSNPAHLLLNMYTLWIFGRMLEPEIGRGRFLT-VYLLSL 171
Query: 116 FTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILN-INVKA 174
+LL + T S G + A+ R + IL I
Sbjct: 172 LGGAAAVLLLSPAYTFTVGASG---AVFGLFGAVLALALWGGRRYRENLSGILVLIGFNT 228
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
+ L P S++GHL GI+ G+
Sbjct: 229 AFG---------LFFPGISWQGHLGGIVTGM 250
>gi|384497502|gb|EIE87993.1| hypothetical protein RO3G_12704 [Rhizopus delemar RA 99-880]
Length = 332
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 73 SAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYIT 132
++F + L +++V L+ G+ LE+ +G + L +I V ++L FYIT
Sbjct: 66 ASFYESNIFTLVFSIVVLLFCGKYLERAWGSKELLKFIIISAVLSNLVTWFGLLFTFYIT 125
Query: 133 NDTSELSHCAI-GFSAVLFAMKTILTRLQPDAYQQIL 168
D S L I G S V A L P+ IL
Sbjct: 126 GDDSNLYQIQINGMSGVFSAFLVAFKHLVPEHRLAIL 162
>gi|436833411|ref|YP_007318627.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
gi|384064824|emb|CCG98034.1| Rhomboid family protein [Fibrella aestuarina BUZ 2]
Length = 306
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 78/207 (37%), Gaps = 30/207 (14%)
Query: 44 IFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW 103
+ RKPW+ L +F H D H+ +NMV L GR +E+ G
Sbjct: 65 LLRKPWTVLTY-------------------SFTHYDPFHILWNMVFLYWFGRLIEEYLGS 105
Query: 104 GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDA 163
+ + L I + L Y + +V Y N +G S ++ L P+
Sbjct: 106 RRLVGLYIMGALGGGLCYFVAYNLVPYFNNQVG--GQVLLGASGAALSVAVGAATLLPNY 163
Query: 164 YQQILNIN-VKAIYAPWFELIIIYLLVPNASFKG---HLSGILVGLTY-----TDTPIGW 214
+L I V+ Y F +++ + + G H+ G LVG Y + +G
Sbjct: 164 TFHLLFIGPVRIKYIVLFFVVLSFFNSVGNNAGGNLAHIGGALVGFVYIKLLQNGSDMGR 223
Query: 215 GLDYVVDKCQEMINGEEQEDMGEEQKQ 241
+ +V+D + + + + Q+
Sbjct: 224 PVYWVMDIWSNLFRAKPPVKVSQRQRS 250
>gi|338211723|ref|YP_004655776.1| rhomboid family protein [Runella slithyformis DSM 19594]
gi|336305542|gb|AEI48644.1| Rhomboid family protein [Runella slithyformis DSM 19594]
Length = 208
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 45 FRKPWSTLDVCISADAVIQQR-DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
F+ P S +D + A + R +Y R I S F H D HL +NM SL G +E G
Sbjct: 21 FQNP-SLIDKWVMNPARVSSRHEYYRFITSGFIHADFGHLIFNMFSLYFFGEAMEMFLG 78
>gi|300025024|ref|YP_003757635.1| rhomboid family protein [Hyphomicrobium denitrificans ATCC 51888]
gi|299526845|gb|ADJ25314.1| Rhomboid family protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 219
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 25 TIPPATLGLVFLQSMVYL------NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHG 78
T P T GL+ + +V+L + F + WS + + D + L+ + F HG
Sbjct: 13 TTPVVTYGLIAINVLVFLLELNAGDQFIQDWSFIPSRFNDD---PAGNLPTLLTAMFMHG 69
Query: 79 DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSEL 138
MHL+ NM+ L + G +E +G +FL+ + + + + +Y+ + +S
Sbjct: 70 GWMHLFGNMLYLYIFGDNIEDRFGHVRFLAFYLACGIAAT-------FAQYYVNSGSSIP 122
Query: 139 SHCAIG-FSAVLFAMKTILTRLQPDAY--QQILNINVKAIYAPWFEL 182
+ A G + VL A + + D + +QI+++ A+ W L
Sbjct: 123 NVGASGAIAGVLGAYILLFPHARVDVFVIRQIVSLPALAVIGFWIVL 169
>gi|156098458|ref|XP_001615261.1| rhomboid-like protease 1 [Plasmodium vivax Sal-1]
gi|148804135|gb|EDL45534.1| rhomboid-like protease 1, putative [Plasmodium vivax]
Length = 276
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 18/168 (10%)
Query: 45 FRKPWSTLDVCISADAV--IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
F P +L + + A+ I+Q + RLIL F H + H ++N+ + G LEK YG
Sbjct: 76 FLTPSDSLLITLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYG 135
Query: 103 WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPD 162
K VI L T +Y +L+ V Y S +G V+ + +L +
Sbjct: 136 IVK----VIILYFLTGIYGNILSSSVTYCPIKVGA-STSGMGLLGVVTSELILLWHVIRH 190
Query: 163 AYQQILNINVKAIYAPWFELI-IIYLLVPNAS---FKGHLSGILVGLT 206
+ + NI +F LI Y N S GHL G+L G++
Sbjct: 191 RERVVFNI-------IFFSLISFFYYFTFNGSNIDHVGHLGGLLSGIS 231
>gi|359687144|ref|ZP_09257145.1| intramembrane serine protease [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418750461|ref|ZP_13306747.1| peptidase, S54 family [Leptospira licerasiae str. MMD4847]
gi|418757302|ref|ZP_13313490.1| peptidase, S54 family [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384116973|gb|EIE03230.1| peptidase, S54 family [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404273064|gb|EJZ40384.1| peptidase, S54 family [Leptospira licerasiae str. MMD4847]
Length = 202
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
++ +Y L S F H D HL++NM++L GR ++ + G F+ L L I
Sbjct: 40 KEGNYYTLATSGFVHADFSHLFFNMLTLYFFGRHVDMVLGPLGFMGLY--------LASI 91
Query: 123 LLAYIVFYITNDTSELSHCAIGFSA 147
L+A +V Y N T + ++ ++G S
Sbjct: 92 LIANLVSYQKNKT-DANYASLGASG 115
>gi|357121685|ref|XP_003562548.1| PREDICTED: transmembrane protein 115-like [Brachypodium distachyon]
Length = 315
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
++V L+L G+ LE ++G + L V + TS+ + A +Y+T + L GF
Sbjct: 81 SIVGLLLFGKLLEPLWGTKELLKFVFIVNFSTSVCVFITAIAFYYVTQQETYLYTPLSGF 140
Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
VL + + +L PD Q LN+ V I W
Sbjct: 141 YGVLSGLLVGIKQLLPD---QELNLFVLKIKGKW 171
>gi|320162418|ref|YP_004175643.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
gi|319996272|dbj|BAJ65043.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
Length = 258
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 52 LDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
L + ++ +IQQ ++ RLI F H H+ +NM +L G LE+ YG +FL L
Sbjct: 66 LAMGAKSNTLIQQGEFWRLITPMFLHVSLPHIAFNMYALYAFGVSLERHYGRRRFLLL 123
>gi|305662826|ref|YP_003859114.1| rhomboid family protein [Ignisphaera aggregans DSM 17230]
gi|304377395|gb|ADM27234.1| Rhomboid family protein [Ignisphaera aggregans DSM 17230]
Length = 452
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 9/153 (5%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
+ R+ S F HGD +H+++NM L + G+++E G ++L++ + +L++
Sbjct: 58 QWYRIFTSMFLHGDILHIFFNMWFLYMFGKEVELSLGITRYLAIYFLSGISATLFHTAFI 117
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDA------YQQILNINVKAIYAPW 179
I+ I L S VL A + R + A + + W
Sbjct: 118 PILGSINLLIPALGASG-AISGVLGAYMMMYPRRRLSACWFLFIFPFCFTTSTSFFMLFW 176
Query: 180 FELIII--YLLVPNASFKGHLSGILVGLTYTDT 210
F +I YL + +F H+ G L G+T+ T
Sbjct: 177 FATQVIYGYLRFGSVAFFAHVGGFLGGITFLYT 209
>gi|156368756|ref|XP_001627858.1| predicted protein [Nematostella vectensis]
gi|156214819|gb|EDO35795.1| predicted protein [Nematostella vectensis]
Length = 494
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 29 ATLGLVFLQSMVYLNIFRKP-WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNM 87
A+ GLV +++YL F P W L VC + R + LI F ++ ++
Sbjct: 70 ASCGLV---TLLYLLTFSGPVWPALAVCPGYLIPPKLRIWT-LITGGFLEYRFWNVGVDI 125
Query: 88 VSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSA 147
L+L G+ +E ++G +FL V+ L V TSL ++ ++ T + G +
Sbjct: 126 AVLVLCGKFIEPLWGALEFLKFVLILNVGTSLLISVVCLALYMATFNLHIWFFQFSGMTG 185
Query: 148 VLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
++ M ++ PD Q+ ++ VK P
Sbjct: 186 IISGMLVAFMQINPDQELQVSSVGVKIKQVP 216
>gi|70992609|ref|XP_751153.1| rhomboid family protein [Aspergillus fumigatus Af293]
gi|74670449|sp|Q4WLP9.1|RBD2_ASPFU RecName: Full=Rhomboid protein 2
gi|66848786|gb|EAL89115.1| rhomboid family protein, putative [Aspergillus fumigatus Af293]
Length = 272
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF-LTVFTSLYYILLAYI 127
RL F H H + N+++L + E +G ++L I L+ F + YIL+
Sbjct: 67 RLNTYPFIHVGFFHAFVNLLALTPLLERFEAEHGTLTAVALFIGPLSTFPAGIYILVEK- 125
Query: 128 VFYITNDTSELSHCAIGFSAVLFAM--KTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
F + ++T+ +G S +F + + + + Y + + +P F ++
Sbjct: 126 -FILRSNTA-----VVGASVWIFLLLGSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALV 179
Query: 186 YLLVPNASFKGHLSGILVG 204
+ VPN SF GHLS I++G
Sbjct: 180 SIFVPNTSFLGHLSAIIIG 198
>gi|421228320|ref|ZP_15685016.1| rhomboid family protein [Streptococcus pneumoniae 2072047]
gi|395592728|gb|EJG52986.1| rhomboid family protein [Streptococcus pneumoniae 2072047]
Length = 225
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ + F H H NM+SL GRQ+E+I+G +F L + + +L+ V
Sbjct: 60 RLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLF-----VFV 114
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
F T+ + S G LFA +L + Y Q L V++ + II +L
Sbjct: 115 FSPTSLAAGASTSLYG----LFAAIIVLRYATRNPYIQQL---VQSYLTLFVVNIIGSVL 167
Query: 189 VPNASFKGHLSGILVG 204
+P S GH+ G + G
Sbjct: 168 IPGISLAGHIGGAVGG 183
>gi|417410105|gb|JAA51530.1| Putative rhomboid domain-containing protein 2, partial [Desmodus
rotundus]
Length = 366
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 115 VFTSLYYILLAYIVFYITNDTSELSHC-----AIGFSAVLFAM---KTILTRLQPDAYQQ 166
F ++ + L++ I+F S LS A GF+ V FAM + +R++
Sbjct: 100 CFFTVIFALISAIIFLSFEAVSSLSKLGEVEDARGFTPVAFAMLGVSAVRSRMR---RAL 156
Query: 167 ILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDT 210
+L + V ++ PW L+ L+P SF ++ G+ VGL Y T
Sbjct: 157 VLGVVVPSMLVPWL-LLCASWLIPQTSFLSNVCGLGVGLAYGFT 199
>gi|383479385|ref|YP_005388279.1| putative serine protease [Streptococcus pyogenes MGAS15252]
gi|383493310|ref|YP_005410986.1| putative serine protease [Streptococcus pyogenes MGAS1882]
gi|378927375|gb|AFC65581.1| putative serine protease [Streptococcus pyogenes MGAS15252]
gi|378929038|gb|AFC67455.1| putative serine protease [Streptococcus pyogenes MGAS1882]
Length = 223
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ F H H + N ++L G+ +E ++G +FL L + V + +
Sbjct: 59 RLVTPIFIHIGFGHFFVNGLTLYFVGQIVEDLWGSRRFLLLYVLSGVMGNAF-------T 111
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
F++T +T A G S LF + T + L Q L K + + LI++ LL
Sbjct: 112 FWLTPET-----VAAGASTSLFGLFTAIVVLSFLGKNQAL----KDLGKSYQTLIVVNLL 162
Query: 189 ----VPNASFKGHLSGILVG 204
+PN S GH+ G++ G
Sbjct: 163 MNLFMPNVSMAGHIGGVVGG 182
>gi|354615757|ref|ZP_09033490.1| Rhomboid family protein [Saccharomonospora paurometabolica YIM
90007]
gi|353219898|gb|EHB84403.1| Rhomboid family protein [Saccharomonospora paurometabolica YIM
90007]
Length = 311
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
AV + ++ RL S F H +HL NM+ L GR +E + G +FL+L F ++
Sbjct: 134 AVAYEGEWWRLFTSGFLHYGLVHLGMNMLVLWFLGRDVELLLGKVRFLTL-----YFVAM 188
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
+A F N + + AI + + +L P I+ +N
Sbjct: 189 LAGSVAVYAFGDFNTATAGASGAIYGLLGALLVAVLRLKLNPTMAIGIIVLN-------- 240
Query: 180 FELIIIYLLVPNASFKGHLSGILVG 204
+++ + +P S GHL G++ G
Sbjct: 241 ---LVLSVTIPGISLLGHLGGLIAG 262
>gi|159124724|gb|EDP49842.1| rhomboid family protein, putative [Aspergillus fumigatus A1163]
Length = 272
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF-LTVFTSLYYILLAYI 127
RL F H H + N+++L + E +G ++L I L+ F + YIL+
Sbjct: 67 RLNTYPFIHVGFFHAFVNLLALTPLLERFEAEHGTLTAVALFIGPLSTFPAGIYILVEK- 125
Query: 128 VFYITNDTSELSHCAIGFSAVLFAM--KTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
F + ++T+ +G S +F + + + + Y + + +P F ++
Sbjct: 126 -FILRSNTA-----VVGASVWIFLLLGSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALV 179
Query: 186 YLLVPNASFKGHLSGILVG 204
+ VPN SF GHLS I++G
Sbjct: 180 SIFVPNTSFLGHLSAIIIG 198
>gi|419714376|ref|ZP_14241793.1| rhomboid family protein [Mycobacterium abscessus M94]
gi|382945655|gb|EIC69948.1| rhomboid family protein [Mycobacterium abscessus M94]
Length = 247
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ Q + R + + F H MH+ NM+SL + G LE+ +G ++ + I+ T
Sbjct: 69 VAQGELWRTVTTGFLHLGLMHIAVNMLSLAMIGPGLERAFGGQRYAA--IYGTALLGSSA 126
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+ + + S + +G + VL ++ RL P +L +N+
Sbjct: 127 AAMWFSPNAVVAGASGAIYGLLGAALVL----SLRERLNPQTIIIVLLLNIG-------- 174
Query: 182 LIIIYLLVPNASFKGHLSGILVGL 205
+ + +P S GH+ G+L G+
Sbjct: 175 ---LSISLPGISLAGHMGGLLFGV 195
>gi|374386348|ref|ZP_09643848.1| hypothetical protein HMPREF9449_02234 [Odoribacter laneus YIT
12061]
gi|373224277|gb|EHP46617.1| hypothetical protein HMPREF9449_02234 [Odoribacter laneus YIT
12061]
Length = 272
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 71 ILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
I F HG HL++NM +L + GR LE ++G +FL
Sbjct: 59 ITHMFMHGSFTHLFFNMFALFMFGRVLESVWGTNRFL 95
>gi|114799025|ref|YP_759062.1| S54 family peptidase [Hyphomonas neptunium ATCC 15444]
gi|114739199|gb|ABI77324.1| peptidase, S54 (rhomboid) family [Hyphomonas neptunium ATCC 15444]
Length = 204
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 28 PATLGLVFLQSMVYLNIFRK-PWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYN 86
PA+L L+ L + L FR P++ ++ + + + ++ RLI S F H + HL+ N
Sbjct: 8 PASLSLIILNVIASLIAFRSAPFNNQNI-LWVGPMKDRGEWHRLISSGFLHVNGPHLFLN 66
Query: 87 MVSLILKGRQLEKIYGWGKFL 107
M L + G +E + G FL
Sbjct: 67 MYGLYMFGPVIEHVLGGVNFL 87
>gi|440705184|ref|ZP_20885986.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
gi|440273071|gb|ELP61867.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
Length = 298
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
+ + + RL+ S F HG MH+ +NM+SL G LE G ++L+L + + L
Sbjct: 130 VAEGQWYRLLTSMFLHGSLMHIVFNMLSLWWLGGPLEAALGRARYLALYL----VSGLAG 185
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
L Y++ T + S G LF +L R LN +++ I A
Sbjct: 186 SALTYLLEAPTTPSLGASGAIFG----LFGATAVLMRR--------LNYDMRPIIA---- 229
Query: 182 LIIIYLL 188
L++I LL
Sbjct: 230 LLVINLL 236
>gi|116619460|ref|YP_821616.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116222622|gb|ABJ81331.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 280
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
D ++ Q ++ RL+ + F HG +H++ N +L G Q+E+ +G + + ++ F+ T
Sbjct: 100 DPLLAQGEWWRLVTAGFLHGGMLHIFMNTWALFGLGAQVEETFGSSR-MWVIYFVATVTG 158
Query: 119 LY 120
Y
Sbjct: 159 FY 160
>gi|21232008|ref|NP_637925.1| hypothetical protein XCC2577 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767865|ref|YP_242627.1| hypothetical protein XC_1541 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990980|ref|YP_001902990.1| Rhomboid family membrane protein [Xanthomonas campestris pv.
campestris str. B100]
gi|384428551|ref|YP_005637911.1| integral membrane protein [Xanthomonas campestris pv. raphani 756C]
gi|21113745|gb|AAM41849.1| integral membrane protein [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573197|gb|AAY48607.1| integral membrane protein [Xanthomonas campestris pv. campestris
str. 8004]
gi|167732740|emb|CAP50934.1| Rhomboid family membrane protein [Xanthomonas campestris pv.
campestris]
gi|341937654|gb|AEL07793.1| integral membrane protein [Xanthomonas campestris pv. raphani 756C]
Length = 228
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + + +L+A+
Sbjct: 65 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLMAWFT 124
>gi|58582905|ref|YP_201921.1| hypothetical protein XOO3282 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58427499|gb|AAW76536.1| integral membrane protein [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 260
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + + +L+A+
Sbjct: 92 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLIAW 149
>gi|255319127|ref|ZP_05360345.1| rhomboid family protein [Acinetobacter radioresistens SK82]
gi|262379259|ref|ZP_06072415.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|421854854|ref|ZP_16287239.1| hypothetical protein ACRAD_02_02130 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|255303773|gb|EET82972.1| rhomboid family protein [Acinetobacter radioresistens SK82]
gi|262298716|gb|EEY86629.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|403189869|dbj|GAB73440.1| hypothetical protein ACRAD_02_02130 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 206
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
+Q+ Y R I F H D HL +NM++L G +E Y
Sbjct: 40 MQKGQYDRFITHGFVHADGAHLLFNMITLFFFGSIIESFY 79
>gi|429755176|ref|ZP_19287847.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429175525|gb|EKY16964.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 262
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
LI AF H HL++NM+ L G ++ +F+ F + + ++ + Y
Sbjct: 56 LISYAFYHVSIQHLFWNMLLLFFTGHIFFNLFNGKQFVKAYSFGIIGGGITFLTIGYFFP 115
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW-FELIIIYLL 188
T++T L A AV+ A+ ++T L P I +K +Y F L I +
Sbjct: 116 SFTDNTMLLGASA----AVMGALAFVVT-LFPSYNVYIFTFKIKLLYVILAFILFDILNI 170
Query: 189 VPN-----ASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQEDMGEEQK 240
N A F G L GI GLT + + + QE +E+E + EEQ+
Sbjct: 171 SVNTGGKIAHFGGILGGIFAGLT---SKYSFRIPKKAKTPQEESPKKEKEVVSEEQQ 224
>gi|229491196|ref|ZP_04385024.1| rhomboid family protein [Rhodococcus erythropolis SK121]
gi|229321934|gb|EEN87727.1| rhomboid family protein [Rhodococcus erythropolis SK121]
Length = 240
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 23 ADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISAD---------AVIQQRDYKRLILS 73
A IP T L+ L + +L F + S ++ + + ++ D+ RLI S
Sbjct: 4 ARAIPIVTYTLMGLNVLAFLATFAQSRSIMNNQVGSSIFANWALNPGLVASGDWFRLIGS 63
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL------------SLVIFLTVFTSL 119
F H +HL NM +L + GR E + G +++ S++ F VF+SL
Sbjct: 64 GFLHFGILHLAVNMYALYILGRDTEIVMGRSRYIGIYLVSLLGGSASVMAFQPVFSSL 121
>gi|171777564|ref|ZP_02919252.1| hypothetical protein STRINF_00086 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283173|gb|EDT48597.1| peptidase, S54 family [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
Length = 223
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ F H H ++N ++L G+ E+I+G KFL+L + + +++ + V
Sbjct: 59 RLVTPIFVHIGWEHFFFNALTLYFVGQIAEQIWGHHKFLALYVLSGIVGNIFTLFFTPNV 118
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
TS A A F L L + YQ ++ +N +I L
Sbjct: 119 IAAGASTSLFGVFAAIMVAGYFGRNPYLKELGRN-YQALIIVN-----------LIFNLF 166
Query: 189 VPNASFKGHLSGILVGL 205
P+ GH+ G++ G+
Sbjct: 167 TPSIGIAGHIGGLVGGV 183
>gi|418731204|ref|ZP_13289617.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|410774099|gb|EKR54118.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 197
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L S F H D MHL +NMVS G+ LE G +F+
Sbjct: 36 RNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFV 80
>gi|387784951|ref|YP_006071034.1| hypothetical protein SALIVA_1904 [Streptococcus salivarius JIM8777]
gi|338745833|emb|CCB96199.1| conserved hypothetical, predicted membrane protein (TSM6)
[Streptococcus salivarius JIM8777]
Length = 224
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 16/167 (9%)
Query: 42 LNIFR--KPWSTLDVCISADAVIQQRDYK--RLILSAFEHGDDMHLYYNMVSLILKGRQL 97
LN F+ P S + A +Q RL+ F H H +NM++L G+
Sbjct: 29 LNGFQATSPLSLFKMGAMYGAFVQYSPLNLWRLVTPIFVHIGVEHFLFNMLALYFMGKMA 88
Query: 98 EKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT 157
E+I+G +FL L + V + + +L V A G S LF + +
Sbjct: 89 EQIFGTLRFLGLYLLAGVMGNAFTLLFTPNV------------IAAGASTSLFGLFAAVV 136
Query: 158 RLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
L ++ +LN + A +I L P+ GHL G++ G
Sbjct: 137 ILGYYSHSPLLNQLGRNYLALIVINLIFNLFTPSVGITGHLGGLVGG 183
>gi|225560885|gb|EEH09166.1| rhomboid protein [Ajellomyces capsulatus G186AR]
Length = 895
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL---YYILLA 125
RL F H H +N+++L + E +G S+ +F+ ++L Y+L
Sbjct: 65 RLNTYPFIHNGLFHTIWNVLALTPLLERFEAEHG--TLTSVALFIGPLSTLPAGLYLLFE 122
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
++ + +T+ L F +L ++ I T Q + + I + P F +I++
Sbjct: 123 KVI--LRGNTTALGSSVWIF--LLLGIEAIKT-FQTNPHFVIGIYRIPTWTTPLFLIILV 177
Query: 186 YLLVPNASFKGHLSGILVG 204
+ L+PN S GHLSG+ VG
Sbjct: 178 FALIPNTSLLGHLSGLAVG 196
>gi|325923383|ref|ZP_08185053.1| uncharacterized membrane protein [Xanthomonas gardneri ATCC 19865]
gi|325546153|gb|EGD17337.1| uncharacterized membrane protein [Xanthomonas gardneri ATCC 19865]
Length = 241
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + + +L+A+
Sbjct: 74 QLLTYAFLHGGFNHLFFNMLALFMFGAALEQTWGQKRFLTYYLVCVAGAGVCQLLMAW 131
>gi|336324598|ref|YP_004604564.1| hypothetical protein CRES_0037 [Corynebacterium resistens DSM
45100]
gi|336100580|gb|AEI08400.1| putative membrane protein [Corynebacterium resistens DSM 45100]
Length = 153
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 21/148 (14%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
AV + R+ + F H D HL N++ + L GR++E+ YGW L+L+I ++ +
Sbjct: 6 GAVKAYGQWYRIFTATFVHLDVGHLLLNLLLISLIGREVERAYGWRVVLALIIACSIGGA 65
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT--RLQPDAYQQILNINVKAIY 176
L+ ++++ T+ G+ LFAM +L+ R Q A +L + V +Y
Sbjct: 66 LF-------IWWMQPLTAVGGASTFGYG--LFAMLILLSTARGQGLAGPAVL-LGVNLVY 115
Query: 177 APWFELIIIYLLVPNASFKGHLSGILVG 204
+ +++ + S GH+ G+ G
Sbjct: 116 S---------VMMTSVSLWGHIGGLAGG 134
>gi|294506674|ref|YP_003570732.1| rhomboid family protein [Salinibacter ruber M8]
gi|294343002|emb|CBH23780.1| Rhomboid family protein [Salinibacter ruber M8]
Length = 317
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 38/199 (19%)
Query: 30 TLGLVFLQSM-----VYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
+ GL+F++S V+ +I +PW +L+ +F H H+
Sbjct: 45 STGLMFVRSHLALHPVFPDILLEPW-------------------QLVTYSFMHTGLFHIG 85
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND-TSELSHCAI 143
NM+ L GR+ E+++G +F S+ + V +L +LL+ I I+ S +
Sbjct: 86 INMLLLFWVGREFERMHGSDQFWSVYLTTAVGGALICLLLSPIAPSISGGMQGGRSIPVL 145
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL-------LVP--NASF 194
G SA + + T + L P Y+QI + + P ++I +L L P N +
Sbjct: 146 GASASVLGVLTTVAILYP--YKQIRLLFFGVV--PLLWVVIGFLGIDALMALRPGGNTAV 201
Query: 195 KGHLSGILVGLTYTDTPIG 213
H G L G Y + G
Sbjct: 202 AAHWGGALTGFLYAKSQQG 220
>gi|84624764|ref|YP_452136.1| integral membrane protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84368704|dbj|BAE69862.1| integral membrane protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 254
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + + +L+A+
Sbjct: 86 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLIAW 143
>gi|421465697|ref|ZP_15914384.1| peptidase, S54 family [Acinetobacter radioresistens WC-A-157]
gi|400203964|gb|EJO34949.1| peptidase, S54 family [Acinetobacter radioresistens WC-A-157]
Length = 206
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
+ ++ I +Q+ Y R I F H D HL +NM++L G +E Y
Sbjct: 28 ALMNRLIFWPPAMQKGQYDRFITHGFVHADGAHLLFNMITLFFFGSIIESFY 79
>gi|441432485|ref|YP_007354527.1| Integral membrane protein [Acanthamoeba polyphaga moumouvirus]
gi|371944779|gb|AEX62601.1| putative rhomboid protein [Moumouvirus Monve]
gi|440383565|gb|AGC02091.1| Integral membrane protein [Acanthamoeba polyphaga moumouvirus]
Length = 177
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 72 LSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYI 131
L F H + HL N +SL LE + G +F +IF+ + +S+ I++ I
Sbjct: 46 LRTFYHANLEHLLANSISL-YSLSFLEDLMGHKQFALAIIFIWIVSSI-------ILYII 97
Query: 132 TNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPN 191
+GFS V+F + I Y L V I+ L++P
Sbjct: 98 HALIPSRKVYTVGFSGVIFGLIVI--------YYMSLGQGVGITLTGLVVSILPQLVIPG 149
Query: 192 ASFKGHLSGILVGLTY 207
SF+GHLSGI+ G+ Y
Sbjct: 150 ISFEGHLSGIIAGIIY 165
>gi|88854509|ref|ZP_01129176.1| rhomboid family membrane protein [marine actinobacterium PHSC20C1]
gi|88816317|gb|EAR26172.1| rhomboid family membrane protein [marine actinobacterium PHSC20C1]
Length = 214
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 69 RLILSAFEHGDD--MHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
R+I SAF H H+ +NM +L + GR LE G +FLSL + + S+ +LLA
Sbjct: 52 RMITSAFLHSPSGIFHIGFNMFTLFIFGRALEIPLGRARFLSLYLISALGGSVAVLLLA 110
>gi|381399873|ref|ZP_09924890.1| Rhomboid family protein [Microbacterium laevaniformans OR221]
gi|380772836|gb|EIC06523.1| Rhomboid family protein [Microbacterium laevaniformans OR221]
Length = 281
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ H H+ +NM++L GR LE + G +FL+L + + S+ LLA
Sbjct: 120 RLLTVTLVHASIFHIAFNMLALWALGRSLEPLLGRWRFLALYLLSALGGSVLTALLAPNT 179
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPD--AYQQILNINVKAIYAPWFELIIIY 186
+ + + +L AM I L + A +L IN L+I +
Sbjct: 180 WVVGASGA--------VWGLLGAMFVIGRHLGANVTAIAVLLGIN----------LVITF 221
Query: 187 LLVPNASFKGHLSGILVG 204
L N +++ H+ G LVG
Sbjct: 222 LPGSNIAWQAHIGGGLVG 239
>gi|340518817|gb|EGR49057.1| predicted protein [Trichoderma reesei QM6a]
Length = 281
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 77 HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTS 136
H + H N V+L + E YG +L +F T++ +L +I I
Sbjct: 70 HLNFFHAVLNAVALAPLMERFESEYG--TLTTLALFFGPLTTIPAVLYLFIEIAILRA-- 125
Query: 137 ELSHCAIGFSA---VLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
+H +G S +L M+ I T + + Y I ++ P ++++ LVPN S
Sbjct: 126 --NHAVMGASMWVFLLLGMEAIRTY-KSNPYLVIGTYHLPTWTTPLLMIVVVAALVPNTS 182
Query: 194 FKGHLSGILVG 204
GHL G+ VG
Sbjct: 183 LLGHLCGVAVG 193
>gi|315657717|ref|ZP_07910597.1| membrane protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|315491514|gb|EFU81125.1| membrane protein [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 313
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 69 RLILSAFEHG--DDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R I +AF H HL +N +L++ GR LE + G K L+L ++ F +L L
Sbjct: 50 RFITAAFLHSVPTPFHLAFNTWALLVVGRALEPVIGHAK-LALAFAISAFGALMAQCLTV 108
Query: 127 IV---FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
+ +IT T S GF ++ A++ +L RL ++ +N
Sbjct: 109 FIDPHAWIT-PTVGASGAVFGFFGMVLAIQKVL-RLPWTEMGTLIGLN-----------F 155
Query: 184 IIYLLVPNASFKGH 197
+I LVPN ++ H
Sbjct: 156 VIGFLVPNVAWVAH 169
>gi|291515609|emb|CBK64819.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Alistipes shahii WAL 8301]
Length = 200
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 22/190 (11%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPW--STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
PP L+ + +VY+ P + + C + Y+ I F H + H++
Sbjct: 8 PPVVKNLIIINVLVYMATALLPVGDTIMQYCALSLGTPYFHTYQ-FITYMFLHANFEHIF 66
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL--YYILLAYIVFYITNDTSELSHCA 142
+NM +L + GR LE G +FL+ + V +L Y LA+ EL
Sbjct: 67 FNMFALWMFGRTLEYELGSQRFLTFYMVCGVGAALIQYLTALAF---------GELPLLL 117
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF-------ELIIIYLLVPNASFK 195
+G S + + + P+A +L I + A WF EL + + V N +
Sbjct: 118 VGASGAVMGLLLAFGVMHPNAVIMLL-IPPIPMKAKWFVIIYAVIELFLGWKGVGNVAHF 176
Query: 196 GHLSGILVGL 205
H+ G+L G
Sbjct: 177 AHVGGMLWGF 186
>gi|45658768|ref|YP_002854.1| hypothetical protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|45602012|gb|AAS71491.1| cytoplasmic membrane protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 198
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+ ++Y L S F H D MHL +NMVS G+ LE G +F+
Sbjct: 37 RNKNYYTLFTSGFIHADWMHLIFNMVSFYSFGKNLEMTVGPIRFI 81
>gi|167376871|ref|XP_001734188.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165904449|gb|EDR29670.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 266
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
F H +HL+ N +SL + G +EK G + + L I + + I L + N
Sbjct: 68 CFIHEGILHLFGNSISLFVFGALVEKQIGTTRIIILFILSIILQPILMISLFSLKLASGN 127
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
+G S +F + I+ QP Y ++ + I + F L LL+ S
Sbjct: 128 S-------VVGMSGYIFTL-IIIFYYQPGKYMDVIYCCILNIISYIFCL----LLLAQVS 175
Query: 194 FKGHLSGILVGLTYTDTPIGW 214
GH GI++G+ YT + W
Sbjct: 176 LSGHFCGIIIGVLYTRGFLDW 196
>gi|149370647|ref|ZP_01890336.1| rhomboid family protein [unidentified eubacterium SCB49]
gi|149356198|gb|EDM44755.1| rhomboid family protein [unidentified eubacterium SCB49]
Length = 290
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 12/157 (7%)
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
+F H D HL +NM+ L R + I+ +FL++ + + L Y+ L+Y VF +
Sbjct: 68 SFIHFDFFHLLFNMIWLHFFSRFVLNIFTPKRFLTVYLLGAIAGGLMYV-LSYNVFPVFE 126
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNAS 193
D L +G SA + A+ + P+ ++ N +K + F + + +P
Sbjct: 127 D--GLPSVLLGASASVTAIMVFIATHSPNTAFRLFNWTIKLWHIALFIFVYDLIRLPIGG 184
Query: 194 FKG----HLSGILVGLTYT-----DTPIGWGLDYVVD 221
G H G + G Y IG G + +VD
Sbjct: 185 NAGGMLAHFGGAVFGYIYARQLLKGNDIGVGFENLVD 221
>gi|89891565|ref|ZP_01203069.1| putative transmembrane rhomboid family protein [Flavobacteria
bacterium BBFL7]
gi|89516112|gb|EAS18775.1| putative transmembrane rhomboid family protein [Flavobacteria
bacterium BBFL7]
Length = 287
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
AF H HL++NM+ L G+ + ++ + ++L F V + + LL +F
Sbjct: 65 AFLHSGIFHLFWNMLILFSFGQMMLNLFKSRQLITL-FFAGVLSGAAFYLLGESLFSTYV 123
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI--IIYLLVPN 191
+++ L +G SA ++A+ + QP+ +++ N+K Y +F L+ I + P+
Sbjct: 124 NSAGL----VGASAGVYAVALFVCTYQPETEVRLIFFNLKLKYIGYFLLVMTIAGIFAPD 179
Query: 192 --ASFKGHLSGILVGL 205
HL GI +G
Sbjct: 180 NVGGNLAHLGGIAIGF 195
>gi|228478048|ref|ZP_04062659.1| membrane-associated serine protease [Streptococcus salivarius
SK126]
gi|228250228|gb|EEK09481.1| membrane-associated serine protease [Streptococcus salivarius
SK126]
Length = 224
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 16/167 (9%)
Query: 42 LNIFR--KPWSTLDVCISADAVIQQRDYK--RLILSAFEHGDDMHLYYNMVSLILKGRQL 97
LN F+ P S + A +Q RL+ F H H +NM++L G+
Sbjct: 29 LNGFQATSPLSLFKMGAMYGAFVQYSPLNLWRLVTPIFVHIGVEHFLFNMLALYFMGKMA 88
Query: 98 EKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT 157
E+I+G +FL L + V + + +L V A G S LF + +
Sbjct: 89 EQIFGTLRFLGLYLLAGVMGNAFTLLFTPNV------------IAAGASTSLFGLFAAVV 136
Query: 158 RLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
L ++ +LN + A +I L P+ GHL G++ G
Sbjct: 137 ILGYYSHSPLLNQLGRNYLALIVINLIFNLFTPSVGITGHLGGLVGG 183
>gi|379706139|ref|YP_005204598.1| hypothetical protein Sinf_1836 [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682838|gb|AEZ63127.1| putative membrane protein [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 223
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL+ F H H ++N ++L G+ E+I+G KFL+L + + +++ + V
Sbjct: 59 RLVTPIFVHIGWEHFFFNALTLYFVGQIAEQIWGHHKFLALYVLSGIVGNIFTLFFTPNV 118
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
TS A A F L L + YQ ++ +N +I L
Sbjct: 119 IAAGASTSLFGVFAAIMVAGYFGRNPYLKELGRN-YQALIIVN-----------LIFNLF 166
Query: 189 VPNASFKGHLSGILVGL 205
P+ GH+ G++ G+
Sbjct: 167 TPSIGIAGHIGGLVGGV 183
>gi|224090695|ref|XP_002309063.1| predicted protein [Populus trichocarpa]
gi|222855039|gb|EEE92586.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V+ + RLI + HG HL NM+SL++ G +LE+ +G+ K V L V +
Sbjct: 101 VVDGHQWWRLITCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVK----VGLLYVISGFG 156
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFA-MKTILTRLQPD----AYQQILNINVKAI 175
LL+ +I ++ S +G S LF + ++L+ L + A Q I + I
Sbjct: 157 GSLLS--ALFIQSNIS------VGASGALFGLLGSMLSELITNWTIYANQVAAFITLVVI 208
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGILVGLTYTDTP-IGW 214
A L I+ + A G LSG L+G + P GW
Sbjct: 209 IAVNLALGILPHVDNFAHIGGFLSGFLLGFVFLIRPQFGW 248
>gi|410027785|ref|ZP_11277621.1| hypothetical protein MaAK2_01234 [Marinilabilia sp. AK2]
Length = 209
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEK--IYGWGKFLSLVIFL 113
+ + R +LS H D MHL +NM + GR +E +Y GK L++FL
Sbjct: 39 NNKQWDRFVLSGLIHKDQMHLLFNMFTFYFFGRVVEMFLLYRMGKSTGLMVFL 91
>gi|365860674|ref|ZP_09400469.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
gi|364009831|gb|EHM30776.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
Length = 220
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 49 WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLS 108
W + + A V + + Y RL+ S F H + +H+ +NM+ L G QLE G ++L+
Sbjct: 39 WDPAPMLVPATGVAEGQWY-RLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLA 97
Query: 109 LVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTR 158
L + + S LLA + + S A G LF +L R
Sbjct: 98 LYLLSGLAGSALTYLLA--------EPGQGSLGASGAVYGLFGATAVLMR 139
>gi|336319156|ref|YP_004599124.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
gi|336102737|gb|AEI10556.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
Length = 299
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 69 RLILSAFEH--GDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
R + SAF H G H+ NMV+L G LE G ++ +L + + S+ +L+A
Sbjct: 108 RFLTSAFLHSPGSIFHIVLNMVALWTVGPYLEVQLGRVRYATLYLLSAIGGSVVVLLVAA 167
Query: 127 IVFYITNDTSELSHCAIGFSAVLF----AMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
+ + S+ +G S +F A ++ R A + I V +++
Sbjct: 168 LGW------SDWYSGVVGASGAVFGLFGAAFVVMWRSGHPAQGMLGVIGVNMVFS----- 216
Query: 183 IIIYLLVPNASFKGHLSGILVG 204
+VP S++GHL G++ G
Sbjct: 217 ----FVVPGISWQGHLGGLVTG 234
>gi|289663205|ref|ZP_06484786.1| integral membrane protein [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 232
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + + +L+A+
Sbjct: 64 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLMAW 121
>gi|256958014|ref|ZP_05562185.1| membrane-associated serine protease [Enterococcus faecalis DS5]
gi|256948510|gb|EEU65142.1| membrane-associated serine protease [Enterococcus faecalis DS5]
Length = 236
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 61 VIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLY 120
V Q +Y R I F H MH+ NMV++ G Q+E IYG ++L + + + +
Sbjct: 56 VAQNHEYWRFITPMFLHIGFMHIILNMVTIYYIGAQVEAIYGHWRYLGIYLLSGIAGN-- 113
Query: 121 YILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
+A F N S + A+ F LF IL R D N + + +
Sbjct: 114 ---IASFAFGTPNSVSAGASTAL-FG--LFGAFVILGRHFRD------NPAIMYMVQRYS 161
Query: 181 ELIIIYLLV----PNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQEMINGEEQ 232
I+I LL + GH+ G++ GL + V +E N E+
Sbjct: 162 MFIVINLLFNLFSSSVDMMGHVGGLIGGLLVATA-------FAVPNREEAFNKHER 210
>gi|322374129|ref|ZP_08048663.1| rhomboid family protein [Streptococcus sp. C150]
gi|321277095|gb|EFX54166.1| rhomboid family protein [Streptococcus sp. C150]
Length = 224
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D RL+ F H H +NM++L G+ E+I+G +FL L + V + A
Sbjct: 57 DLWRLVTPIFVHIGLEHFLFNMLTLYFIGKMAEQIFGTLRFLGLYLLAGVMGN------A 110
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ + + N A G S LF + + L ++ +LN ++ + +I
Sbjct: 111 FTLIFTPNV------IAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRSYLSLIVVNLIF 164
Query: 186 YLLVPNASFKGHLSGILVG 204
L P+ GHL G++ G
Sbjct: 165 NLFTPSVGITGHLGGLVGG 183
>gi|289668300|ref|ZP_06489375.1| integral membrane protein [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 232
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + + +L+A+
Sbjct: 64 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLMAW 121
>gi|119472796|ref|XP_001258417.1| rhomboid family protein, putative [Neosartorya fischeri NRRL 181]
gi|119406569|gb|EAW16520.1| rhomboid family protein, putative [Neosartorya fischeri NRRL 181]
Length = 272
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF-LTVFTSLYYILLAYI 127
RL F H H + N+++L + E +G ++L I L+ F + YIL+
Sbjct: 67 RLNTYPFIHVGFFHAFVNLLALTPLLERFEAEHGTLTAVALFIGPLSTFPAGIYILIEKF 126
Query: 128 VFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL 187
+ + ++T+ + F +L + I T + + Y + + +P F ++ +
Sbjct: 127 ILH--SNTAVVGASVWVF--LLLGSEAIKT-FKSNPYFSLGTTKIPTWTSPLFACALVSI 181
Query: 188 LVPNASFKGHLSGILVG 204
VPN SF GHLS I++G
Sbjct: 182 FVPNTSFLGHLSAIIIG 198
>gi|430805416|ref|ZP_19432531.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
gi|429502334|gb|ELA00646.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
Length = 533
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
A+ Q + RL+ + F HG HL NMV L L G+ +E+ +G FL + + + S
Sbjct: 213 ALTQDGQWWRLLTATFLHGSLKHLAANMVVLYLLGKHVERFFGTRSFLLIYVGAGLLGS- 271
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL 156
+ Y TS ++G S +F + L
Sbjct: 272 ------ALSLYFAAQTS----VSVGASGAVFGIGGAL 298
>gi|384412426|ref|YP_005621791.1| rhomboid family protein [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|335932800|gb|AEH63340.1| Rhomboid family protein [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 212
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 26 IPPA--TLGLVFLQSMVYLNIF----RKPWSTLDVCISA------DAVIQQRDYKRLILS 73
+PPA T LV L S V+L F + W+ I A V + + +
Sbjct: 3 LPPARATTVLVILTSGVWLTTFLLKIQDLWAVKAGFIPARLHGWASGVPSLPFWITPLSA 62
Query: 74 AFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITN 133
F HG MH+ +NMV L GR +E I G KFL L + + ++S ++ L Y
Sbjct: 63 TFAHGGLMHIAFNMVMLAFCGRYVEMIIGSRKFLWLYV-IGAYSSAFFQYLFY------P 115
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQ 166
++ + A G + LF +L +P +
Sbjct: 116 NSQDPMIGASGAISTLFGAYAVLFGREPQIFAS 148
>gi|119872750|ref|YP_930757.1| rhomboid family protein [Pyrobaculum islandicum DSM 4184]
gi|119674158|gb|ABL88414.1| Rhomboid family protein [Pyrobaculum islandicum DSM 4184]
Length = 231
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
+ P T LVF+ +V++ P + A+ Y R + F HG +H+
Sbjct: 12 SSFPFVTKALVFINIVVFIYELLNP-EIVQKYAFVPALAWIEPY-RWVTHMFLHGGLLHI 69
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
NM+ L + G +E YG G+FL+L IF V
Sbjct: 70 VGNMIYLWVFGDNVEDHYGHGRFLALYIFWGV 101
>gi|444715566|gb|ELW56431.1| Rhomboid domain-containing protein 2 [Tupaia chinensis]
Length = 346
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 115 VFTSLYYILLAYIVFYITNDTSELSHC-----AIGFSAVLFAMKTILTRLQPDAYQQILN 169
F +L + + + I+F S LS A GF+ V FAM + T +
Sbjct: 103 CFFTLVFAVFSAIIFLSFEAVSSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFG 162
Query: 170 INVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
+ V ++ PW L+ L+P SF ++ G+ +GL Y
Sbjct: 163 MVVPSVLVPWL-LLGASWLIPQTSFLSNVCGLSIGLAY 199
>gi|170289832|ref|YP_001736648.1| membrane associated serine protease [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170173912|gb|ACB06965.1| Membrane associated serine protease [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 203
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 57 SADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
S+ + + Y+ LI S F H + MHL+ NM +L + G+ E G KF+SL
Sbjct: 62 SSGSYLISGRYETLITSMFLHANLMHLFLNMYALYILGKVAEISLGRTKFISL 114
>gi|57640721|ref|YP_183199.1| integral membrane protein rhomboid-like protein [Thermococcus
kodakarensis KOD1]
gi|57159045|dbj|BAD84975.1| integral membrane protein Rhomboid homolog [Thermococcus
kodakarensis KOD1]
Length = 206
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 26/152 (17%)
Query: 60 AVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
AV+ + +L + F H + +H+++NM L+ GRQLE++ G +
Sbjct: 53 AVLNYGYWWQLFTAMFVHVNIIHIFFNMYFLLTMGRQLERVLGPRR-------------- 98
Query: 120 YYILLAYIVFYITNDTSEL-----SHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKA 174
+++ YIV + + L + G S LF + L + ++ N++A
Sbjct: 99 --VVMTYIVSGLVGNVLTLFLKPPMTVSAGASGALFGIVGALITISG-----VVGGNMQA 151
Query: 175 IYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
F L +I ++P + HL G+L G+
Sbjct: 152 AMMNAFFLFLINSVLPGVNAYAHLGGLLAGIA 183
>gi|417794700|ref|ZP_12441942.1| peptidase, S54 family [Streptococcus oralis SK255]
gi|334267847|gb|EGL86299.1| peptidase, S54 family [Streptococcus oralis SK255]
Length = 226
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 21/151 (13%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL + F H H NM+SL GRQ+E+I+G KF L + + +L+ V
Sbjct: 60 RLFSAIFVHIGWEHFIVNMISLYFLGRQVEEIFGSKKFFFLYLLSGMMGNLF-------V 112
Query: 129 FYITNDTSELSHCAIGFSAV---LFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
F T A G S LFA +L + Y Q L + Y F + II
Sbjct: 113 FAFTPKV-----VAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQS----YLTLFVINII 163
Query: 186 -YLLVPNASFKGHLSGILVG-LTYTDTPIGW 214
+L+P S GH+ G + G P+ W
Sbjct: 164 GSILIPGISLAGHIGGAVGGAFLAVIFPVKW 194
>gi|375256271|ref|YP_005015438.1| peptidase, S54 family [Tannerella forsythia ATCC 43037]
gi|363408608|gb|AEW22294.1| peptidase, S54 family [Tannerella forsythia ATCC 43037]
Length = 294
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF-YITN 133
F H D +HL +NM+ L GR + + + + I V +L Y +LAY +F Y N
Sbjct: 74 FLHADFLHLLFNMLWLYWFGRMAMEFFNGRQLAGIYISGGVAGALMY-MLAYNLFPYFRN 132
Query: 134 DTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNA 192
E+ +G SA + A+ ++ + D Q++ I ++ +Y +F II +L + +
Sbjct: 133 --REMVAFLMGASASVMAIVFAVSLYRKDYELQLMFIGRIRLLYLAFFAFIIDFLSITSD 190
Query: 193 SFKGHLSGI 201
+ GH++ I
Sbjct: 191 NAGGHIAHI 199
>gi|419707143|ref|ZP_14234640.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus salivarius PS4]
gi|383283103|gb|EIC81070.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus salivarius PS4]
Length = 224
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D RL+ F H H +NM++L G+ E+I+G +FL L + V + A
Sbjct: 57 DLWRLVTPIFVHIGLEHFLFNMLTLYFIGKMAEQIFGTLRFLGLYLLAGVMGN------A 110
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ + + N A G S LF + + L ++ +LN ++ + +I
Sbjct: 111 FTLIFTPNV------IAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRSYLSLIVVNLIF 164
Query: 186 YLLVPNASFKGHLSGILVG 204
L P+ GHL G++ G
Sbjct: 165 NLFTPSVGITGHLGGLVGG 183
>gi|429751770|ref|ZP_19284677.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429179811|gb|EKY21047.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 253
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F HG HL +NM +L G LE I+G GKFL + +L + ++ Y +Y+
Sbjct: 56 FMHGGFTHLLFNMYALWAFGTPLENIWGRGKFLFFYFSCGIGAALLHTIINY--YYVHQG 113
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
L + + V+ A+ R ++ I+N + F+ + + P
Sbjct: 114 LEALQNVGVSTEEVISALS---DRKYLPMWETIINKST-------FDNMAAAIATPTVGA 163
Query: 195 KGHLSGILVGLT 206
G + GILV
Sbjct: 164 SGAIYGILVAFA 175
>gi|307710953|ref|ZP_07647376.1| rhomboid family protein [Streptococcus mitis SK321]
gi|307617193|gb|EFN96370.1| rhomboid family protein [Streptococcus mitis SK321]
Length = 225
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RL + F H H NM+SL GRQ+E+I+G KF L + + +L+ V
Sbjct: 60 RLFSAIFVHIGWEHFIVNMISLYYLGRQVEEIFGSKKFFFLYLLSGMMGNLF-----VFV 114
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLL 188
F + + S G LFA +L + Y Q L + ++ II +L
Sbjct: 115 FSPKSLAAGASTSLYG----LFAAIIVLRYATRNPYIQQLGQSYLTLFV---VNIIGSVL 167
Query: 189 VPNASFKGHLSGILVG 204
+P S GH+ G + G
Sbjct: 168 IPGISLAGHIGGAVGG 183
>gi|294495822|ref|YP_003542315.1| rhomboid family protein [Methanohalophilus mahii DSM 5219]
gi|292666821|gb|ADE36670.1| Rhomboid family protein [Methanohalophilus mahii DSM 5219]
Length = 292
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 38/170 (22%)
Query: 43 NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
NI +PW+ LI F H HL++NM+ L GR LE+ G
Sbjct: 133 NILSRPWT-------------------LISHMFLHASLGHLFFNMLVLYFFGRILERRIG 173
Query: 103 WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPD 162
F+ L V +L +I T+ S+ +G S + + L L+P+
Sbjct: 174 NSMFIYLYFISGVVAALGFI-----------ATTSTSYPMVGASGAIMGVFATLAVLEPN 222
Query: 163 --AYQQILNINVKAIYAPWFELIIIYLLVPNAS-----FKGHLSGILVGL 205
Y + +K+ F ++ ++ + N S HLSG+ VG+
Sbjct: 223 LPVYVFFFPMTIKSALI-LFVIVDLFFMYVNISGDMIAHAAHLSGVFVGI 271
>gi|238023223|ref|ZP_04603649.1| hypothetical protein GCWU000324_03150 [Kingella oralis ATCC 51147]
gi|237865606|gb|EEP66746.1| hypothetical protein GCWU000324_03150 [Kingella oralis ATCC 51147]
Length = 220
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 62/153 (40%), Gaps = 15/153 (9%)
Query: 64 QRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYIL 123
+ Y RLI S F H D HL++NM +L R + YG F+ L I V + + +
Sbjct: 43 NKQYYRLITSGFLHADWGHLFFNMFTLYFFARPIMFYYGVFVFVWLYIGSIVAGNAFSLW 102
Query: 124 LAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKA-IYAP-WFE 181
L Y + + G S VLFA L P + I V A I+A +F
Sbjct: 103 L-----YKNRPSYAAIGASGGVSGVLFAA----IALAPTQTIGVYFIPVTAWIFATLYFA 153
Query: 182 LIIIYLLVP----NASFKGHLSGILVGLTYTDT 210
+ LL P N HL G +G+ T
Sbjct: 154 YSVAMLLKPRPWDNIGHAAHLGGAALGMVLVAT 186
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 45 FRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWG 104
F + W + + + + +Y RL+ F H H +N SL+L G LE++ G
Sbjct: 39 FAQEWKAWGMGV--NVFVLNGEYWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQMLGKV 96
Query: 105 KFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAY 164
KF++L +F + + + +I + ++ +H +G S +F + + + +
Sbjct: 97 KFIALYLFAGIAGN--------VGTFIVDPSAYYAH--LGASGAIFGIFGVYIFMVWNRK 146
Query: 165 QQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLT 206
I N + I + + + PN + GHL G++ G
Sbjct: 147 HLIDQANSQIIGVIVALGLFMTFVRPNINILGHLFGLIGGFA 188
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
RLI S F H + H+ NM+SL + G+ +E I G K L + +F ++ + L
Sbjct: 203 RLISSMFIHFNFEHILMNMLSLFIFGKLVEAIAGHWKMLGIYFISGIFGNIVSLALD--- 259
Query: 129 FYITNDTSELSHCAI-GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL 187
TN S + AI G LFA+ + + P Q+ + V A+ L + L
Sbjct: 260 ---TNSISVGASGAIFGLIGSLFAIMYLSKQYTPKMLLQL--VGVLAL------LTVFSL 308
Query: 188 LVPNASFKGHLSGILVGLTYT 208
+ N + HL G + GL T
Sbjct: 309 FMANVNIYAHLGGFIGGLLAT 329
>gi|424863154|ref|ZP_18287067.1| rhomboid protease GlpG [SAR86 cluster bacterium SAR86A]
gi|400757775|gb|EJP71986.1| rhomboid protease GlpG [SAR86 cluster bacterium SAR86A]
Length = 161
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ R + RLI F H HL +N + + + G ++EK G F SLVIF +F++
Sbjct: 10 ENRQWWRLITPTFIHFSFAHLAFNCLWIYILGEKIEKFDGILVFFSLVIFSAIFSN 65
>gi|433650924|ref|YP_007295926.1| putative membrane protein [Mycobacterium smegmatis JS623]
gi|433300701|gb|AGB26521.1| putative membrane protein [Mycobacterium smegmatis JS623]
Length = 287
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D+ RL+ SAF H HL +NM +L + G LE G +F +L ++L +L
Sbjct: 112 DWYRLVTSAFLHYGIAHLLFNMYALYIMGPSLESWLGRLRFSALY----AMSALGGSVLV 167
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYA-----PWF 180
Y++ + T+ S G F + + LN+NV+ + F
Sbjct: 168 YLLSPLNAATAGASGAVFGLFGAAFVIG------------KRLNLNVQWVVGLIVLNLAF 215
Query: 181 ELIIIYLLVPNASFKGHLSGIL 202
+I L S++GH+ G++
Sbjct: 216 TFVIPALGGQQISWQGHIGGLV 237
>gi|325089170|gb|EGC42480.1| rhomboid protein [Ajellomyces capsulatus H88]
Length = 853
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL---YYILLA 125
RL F H H +N+++L + E +G S+ +F+ ++L Y+L
Sbjct: 65 RLNTYPFIHNGLFHTIWNVLALTPLLERFEAEHG--TLTSVALFIGPLSTLPAGLYLLFE 122
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
++ + +T+ L F +L ++ I T Q + + I + P F +I++
Sbjct: 123 KVI--LRGNTTALGSSVWIF--LLLGIEAIKT-FQTNPHFVIGIYRIPTWTTPLFLIILV 177
Query: 186 YLLVPNASFKGHLSGILVG 204
+ L+PN S GHLSG+ VG
Sbjct: 178 FALIPNTSLLGHLSGLAVG 196
>gi|404406119|ref|ZP_10997703.1| hypothetical protein AJC13_11845 [Alistipes sp. JC136]
Length = 200
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 22/190 (11%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWST--LDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
PP L+ + +VY+ P ++ C + Y+ I F H + H++
Sbjct: 8 PPVVKNLIIINVLVYMATALLPVGNQIMEYCALSLGTPFFHTYQ-FITYMFLHANFEHIF 66
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL--YYILLAYIVFYITNDTSELSHCA 142
+NM +L + GR LE G +FL+ + + +L Y LA+ EL
Sbjct: 67 FNMFALWMFGRTLEYELGSQRFLTFYMVCGIGAALIQYLTALAF---------GELPLLL 117
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWF-------ELIIIYLLVPNASFK 195
+G S + + + P+A +L I + A WF EL + + V N +
Sbjct: 118 VGASGAVMGLLLAFGVMHPNAVIMLL-IPPIPMKAKWFVIIYAVIELFLGWRGVGNVAHF 176
Query: 196 GHLSGILVGL 205
H+ G+L G
Sbjct: 177 AHVGGMLWGF 186
>gi|115450317|ref|NP_001048759.1| Os03g0116400 [Oryza sativa Japonica Group]
gi|108705857|gb|ABF93652.1| membrane protein, putative, expressed [Oryza sativa Japonica Group]
gi|113547230|dbj|BAF10673.1| Os03g0116400 [Oryza sativa Japonica Group]
gi|125542142|gb|EAY88281.1| hypothetical protein OsI_09736 [Oryza sativa Indica Group]
gi|125584694|gb|EAZ25358.1| hypothetical protein OsJ_09173 [Oryza sativa Japonica Group]
gi|215692511|dbj|BAG87931.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 325
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
D V+ + RLI S + H +HL NM+SLI G +LE+ +G+ + ++ + + S
Sbjct: 105 DKVVHEHQGYRLITSIWLHAGVLHLVANMLSLIFIGLRLEQQFGYVRIGAIYLLSGLGGS 164
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAM 152
+ L +I N H ++G S LF +
Sbjct: 165 VLSSL------FIRN------HISVGASGALFGL 186
>gi|359429423|ref|ZP_09220449.1| putative rhomboid family protein [Acinetobacter sp. NBRC 100985]
gi|358235273|dbj|GAB01988.1| putative rhomboid family protein [Acinetobacter sp. NBRC 100985]
Length = 205
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101
+ ++ I +Q+ + R I F H D HL +NM++L G +E Y
Sbjct: 28 AVMNRLIFWPPAMQRGQFDRFITHGFVHADGTHLLFNMITLFFFGNIIESFY 79
>gi|83815079|ref|YP_444821.1| S54 family peptidase [Salinibacter ruber DSM 13855]
gi|83756473|gb|ABC44586.1| peptidase, S54 (rhomboid) family, putative [Salinibacter ruber DSM
13855]
Length = 282
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 30 TLGLVFLQSM-----VYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLY 84
+ GL+F++S V+ +I +PW +L+ +F H H+
Sbjct: 10 STGLMFVRSHLALHPVFPDILLEPW-------------------QLVTYSFMHTGLFHIG 50
Query: 85 YNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND-TSELSHCAI 143
NM+ L GR+ E+++G +F S+ + V +L +LL+ I I+ S +
Sbjct: 51 INMLLLFWVGREFERMHGSDQFWSVYLTTAVGGALICLLLSPIAPSISGGMQGGRSIPVL 110
Query: 144 GFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL-------LVP--NASF 194
G SA + + T + L P Y+QI + + P ++I +L L P N +
Sbjct: 111 GASASVLGVLTTVAILYP--YKQIRLLFFGVV--PLLWVVIGFLGIDALMALRPGGNTAV 166
Query: 195 KGHLSGILVGLTYTDTPIG 213
H G L G Y G
Sbjct: 167 AAHWGGALTGFLYAKNQQG 185
>gi|188577743|ref|YP_001914672.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188522195|gb|ACD60140.1| peptidase, S54 (rhomboid) family, putative [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 232
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+L+ AF HG HL++NM++L + G LE+ +G +FL+ + + +L+A+
Sbjct: 64 QLLTYAFLHGGFNHLFFNMLALFMFGAPLEQTWGQKRFLTYYLVCVAGAGVCQLLIAW 121
>gi|429195115|ref|ZP_19187166.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
gi|428669169|gb|EKX68141.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
Length = 296
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSL 109
+ + + RL+ S F HG MH+ +NM+SL G LE G ++++L
Sbjct: 128 VAEGQWYRLLTSMFLHGSVMHIAFNMLSLWWLGGPLEAALGRARYIAL 175
>gi|416361193|ref|ZP_11682501.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
gi|338194390|gb|EGO86853.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
Length = 200
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ ++ Y RLI F HG MHL NM +L G +EK YG K+ ++I+L
Sbjct: 54 NTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKY--IIIYL----- 106
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L ++ + F +N S IG S +F++ + L + +K + +
Sbjct: 107 LGGLISSISSFIFSNGVS------IGASGAIFSLLGAILVLTIKMRSVVGKDTIKNVISV 160
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGL 205
I I L +PN H+ G+L G+
Sbjct: 161 IVVNIFIGLAIPNIDNFAHVGGLLGGV 187
>gi|212550736|ref|YP_002309053.1| hypothetical protein CFPG_379 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548974|dbj|BAG83642.1| conserved hypothetical protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 198
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
+LI F H HL++NM +L + G +E ++ +FL+ I + L +L V
Sbjct: 50 QLITYMFTHETFQHLFFNMFALFMFGGAVEMVWKQKRFLTYYIVTGIGAGLVQVL----V 105
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDA--YQQILNINVKAIYAPWFELIIIY 186
FYI E IG S +F + L P+ Y + I VKA Y ++ Y
Sbjct: 106 FYIKISPQEA--VMIGASGAIFGLLLAFGILFPETLLYIMFIPIPVKAKY-----FVVGY 158
Query: 187 LLVP-----------NASFKGHLSGILVGLT 206
L+ N + HL G+L G++
Sbjct: 159 GLLEFFYGMSRNVSDNVAHFAHLGGMLFGIS 189
>gi|302543949|ref|ZP_07296291.1| rhomboid family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461567|gb|EFL24660.1| rhomboid family protein [Streptomyces himastatinicus ATCC 53653]
Length = 292
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 57 SADAV-IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV 115
+AD V + + + RL+ +AF H +H+ +NM+SL G LE G ++L+L + +
Sbjct: 117 TADIVGVAEGQWYRLLTAAFLHQQPLHIAFNMLSLWWIGAPLEAALGRARYLTLYLLSGL 176
Query: 116 FTSLYYILLA 125
S LLA
Sbjct: 177 GGSALSYLLA 186
>gi|9963865|gb|AAG09733.1|AF226732_1 NPD007 [Homo sapiens]
Length = 434
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
L L S L + ++P + + + ++A+ + Y RL+ F + + + L + +
Sbjct: 72 LSLLVSGPRLFLLQQPLAPSGLTLKSEALRNWQVY-RLVTYIFVYENPISLLCGAIIIWR 130
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC--AIGFSAVLF 150
E+ G + + +F+++ ++ F + S+L A GF+ V F
Sbjct: 131 FAGNFERTVGTVRHCFFTVIFAIFSAIIFL-----SFEAVSSLSKLGEVEDARGFTPVAF 185
Query: 151 AM---KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
AM T+ +R++ + + V ++ PW L+ L+P SF ++ G+ +GL Y
Sbjct: 186 AMLGVTTVRSRMR---RALVFGMVVPSVLVPWL-LLGASWLIPQTSFLSNVCGLSIGLAY 241
Query: 208 T 208
Sbjct: 242 A 242
>gi|330836099|ref|YP_004410740.1| Peptidase S54, rhomboid domain-containing protein [Sphaerochaeta
coccoides DSM 17374]
gi|329748002|gb|AEC01358.1| Peptidase S54, rhomboid domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 255
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F H H+ +NM+ L + G +E+ G +FL L LT S + +A Y+
Sbjct: 108 FVHSGVSHILFNMLGLFIFGSMVERRIGSREFL-LFYMLTGIVSGVFSFIA----YMAAG 162
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVP---- 190
TS +S +G S V++ + + PDA +I + + AP L+IIY +
Sbjct: 163 TSAVS--LVGASGVIYGIMLMFATFFPDA--RIFVFGIFPVRAPM--LVIIYFAIELFSQ 216
Query: 191 -----NASFKGHLSGILVGLTYT 208
N + HL+G+ V Y+
Sbjct: 217 IRGGGNVAHLTHLAGLGVAYLYS 239
>gi|403727958|ref|ZP_10947871.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
gi|403203710|dbj|GAB92202.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
Length = 254
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 32 GLVFLQSMVYLN-IFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSL 90
G+ L+S ++++ KPW + +Y RL+ + F H H+ NM+SL
Sbjct: 50 GVDMLRSQLFVDWALYKPW------------VADGEYWRLLTAGFLHFSVTHIAVNMLSL 97
Query: 91 ILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAI-GFSAVL 149
+ GR LE G ++L + + T+L A +V N + + AI G +
Sbjct: 98 YILGRDLEIAIGIPRYLGVYL-----TALLGGSAAVMVLGADNGVNAGASGAIYGLMGAV 152
Query: 150 FAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTYT 208
+ I R P I+ +N +++ + +P S H+ G++ G T
Sbjct: 153 LVV-VIKARASPTPVITIIVLN-----------LVLSVTIPGISLFAHVGGLVFGAAAT 199
>gi|212692209|ref|ZP_03300337.1| hypothetical protein BACDOR_01705 [Bacteroides dorei DSM 17855]
gi|212665086|gb|EEB25658.1| peptidase, S54 family [Bacteroides dorei DSM 17855]
Length = 225
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 68 KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+LI F HG H+++NM +L + GR LE+++G +FL
Sbjct: 49 AQLITYMFMHGGFQHIFFNMFALWMFGRTLEQVWGPKRFL 88
>gi|85705041|ref|ZP_01036141.1| rhomboid family protein [Roseovarius sp. 217]
gi|85670363|gb|EAQ25224.1| rhomboid family protein [Roseovarius sp. 217]
Length = 248
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 77/199 (38%), Gaps = 22/199 (11%)
Query: 27 PPATLGLVFLQSMVY------------LNIFRKPWSTLDVCISADAVIQQRDYKRLILSA 74
P T GL+ L +V+ LN+F W+ + ++ Q D+ L+ S
Sbjct: 14 PYVTYGLIALNVVVFMAYWPLFADERALNLFFYDWAMIPAKVT-----QLGDFTGLLTSM 68
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F HG +HL NM+ L + G +E G +L+ + V L +IL T
Sbjct: 69 FLHGGVLHLAGNMLFLWIFGDNMEDRMGHLPYLAFYLATGVAAGLAHILGGPGSMVPTVG 128
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
S +G +LF + L + +++ I + A WF ++ L +
Sbjct: 129 ASGAIAGVMGGYLLLFPKARVDILLIFIVFFRVITIPAALMLALWFAFQVMAGLGSDPDM 188
Query: 195 KG-----HLSGILVGLTYT 208
G H G + G+ T
Sbjct: 189 GGVAYWAHAGGFVAGVVLT 207
>gi|300780117|ref|ZP_07089973.1| rhomboid family protein [Corynebacterium genitalium ATCC 33030]
gi|300534227|gb|EFK55286.1| rhomboid family protein [Corynebacterium genitalium ATCC 33030]
Length = 215
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 17/139 (12%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
Y R + S F H D HL N+ L+ G +E+ G G +++ + + S A
Sbjct: 58 GYLRALTSGFLHVDISHLVVNLFVLVFIGPVVERFVGTGPYVAAYLACILGGS-----AA 112
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
+ F T+ S G A+L A I R + D ++ + ++
Sbjct: 113 VLFFGFAQPTAGASGALYGLMAILVA---IAARNRADLRAPLVLVAGNLVFT-------- 161
Query: 186 YLLVPNASFKGHLSGILVG 204
L++P S GHL G++ G
Sbjct: 162 -LVMPGVSLWGHLGGMVTG 179
>gi|359442292|ref|ZP_09232162.1| hypothetical protein P20429_2538 [Pseudoalteromonas sp. BSi20429]
gi|358035903|dbj|GAA68411.1| hypothetical protein P20429_2538 [Pseudoalteromonas sp. BSi20429]
Length = 361
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 28/194 (14%)
Query: 27 PPATLGLVFLQSMVYLNIFRKPWS---TLDVCISADAVIQQRDYKRLILSA-FEHGDDMH 82
P T GL+ L ++++ F P S +D A + + + +L+ F HG MH
Sbjct: 152 PWVTRGLIVLNTLIFALYFLNPSSFSYVIDNFAMTPADLSKGNELWTVLTCVFLHGSIMH 211
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI---LLAYIVFYITNDTSELS 139
L NM L + G LE + G +FL L+Y+ LLA YI + S +
Sbjct: 212 LVGNMYFLYIVGDNLEDVLGHKRFL-----------LWYLACGLLASFASYIVSPMSTIP 260
Query: 140 HC-AIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNA------ 192
A G A LF M + R + I I K + A WF I + + A
Sbjct: 261 GVGASGAIAGLFGMYLMWFRHASLTFMFI--IYQKKLSAVWFFAIWLGFNIFGAVTGPDG 318
Query: 193 -SFKGHLSGILVGL 205
+ H+ G + GL
Sbjct: 319 IDYGAHIGGFIAGL 332
>gi|328875515|gb|EGG23879.1| hypothetical protein DFA_06017 [Dictyostelium fasciculatum]
Length = 206
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 53 DVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF 112
V + + + + Y R I S F H + +HL N +SL + R LE+ G +++ F
Sbjct: 34 SVSFNFEKITRYGQYWRFISSTFTHINLVHLALNSISL-WQLRFLEQSIGLYQYVKYSFF 92
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELS-HCAIGFSAVLFAMKTILTRLQPDAYQQILNIN 171
+ + ++L + IV I T L IG+S V F + T Y +++
Sbjct: 93 ILLSSNLMMMFFISIV-NIQRPTLNLKDRNYIGYSCVCFGLST---------YYSLIHFG 142
Query: 172 VKAIYAPWFELIIIYLLVPNASFKGHL 198
+ + + L+ +L PNASF GHL
Sbjct: 143 FSNL-SIFTSLLFTQILFPNASFIGHL 168
>gi|237711514|ref|ZP_04541995.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265752939|ref|ZP_06088508.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|345514023|ref|ZP_08793537.1| hypothetical protein BSEG_02055 [Bacteroides dorei 5_1_36/D4]
gi|423230808|ref|ZP_17217212.1| hypothetical protein HMPREF1063_03032 [Bacteroides dorei
CL02T00C15]
gi|423240560|ref|ZP_17221674.1| hypothetical protein HMPREF1065_02297 [Bacteroides dorei
CL03T12C01]
gi|423244519|ref|ZP_17225594.1| hypothetical protein HMPREF1064_01800 [Bacteroides dorei
CL02T12C06]
gi|229435837|gb|EEO45914.1| hypothetical protein BSEG_02055 [Bacteroides dorei 5_1_36/D4]
gi|229454209|gb|EEO59930.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236125|gb|EEZ21620.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|392630458|gb|EIY24451.1| hypothetical protein HMPREF1063_03032 [Bacteroides dorei
CL02T00C15]
gi|392642093|gb|EIY35865.1| hypothetical protein HMPREF1064_01800 [Bacteroides dorei
CL02T12C06]
gi|392643522|gb|EIY37271.1| hypothetical protein HMPREF1065_02297 [Bacteroides dorei
CL03T12C01]
Length = 225
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 68 KRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFL 107
+LI F HG H+++NM +L + GR LE+++G +FL
Sbjct: 49 AQLITYMFMHGGFQHIFFNMFALWMFGRTLEQVWGPKRFL 88
>gi|50307513|ref|XP_453736.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642870|emb|CAH00832.1| KLLA0D15224p [Kluyveromyces lactis]
Length = 343
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 21/164 (12%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
L+ SAF H + HL NM+ L G L + G G F SL + + SL+ + +
Sbjct: 182 LLGSAFSHQEFWHLGMNMICLFSFGTSLVTMLGPGNFTSLYLNSAIAGSLFSL------W 235
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL--IIIYL 187
Y + ++G S LF + + L P+A V + WF ++ +
Sbjct: 236 YPRFAKIAMMGPSLGASGALFGLFGCFSYLIPNAKMMFFIFPVP--FGAWFTFLGLVTWN 293
Query: 188 LVPNA------SFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQE 225
+V A + HL G +G+ Y GW + + K +E
Sbjct: 294 VVGCALRWGSFDYAAHLGGSAMGVLY-----GWLVAKSIQKQRE 332
>gi|300725858|ref|ZP_07059322.1| rhomboid family protein [Prevotella bryantii B14]
gi|299776846|gb|EFI73392.1| rhomboid family protein [Prevotella bryantii B14]
Length = 315
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 28/164 (17%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTV----------FTS 118
+L+ F H H+ +NM +L + G +E+++G KFL IF V F
Sbjct: 49 QLVTYMFMHAGWQHIIFNMFALWMFGCVVERVWGPKKFLFYYIFTGVGAGILQEIVQFAQ 108
Query: 119 LYYILLAYIVFYITNDTSELSH---------CAIGFSAVLFAMKTILTRLQPDAYQQILN 169
LYY+ + + +D E++H +G S ++A+ + P+ I
Sbjct: 109 LYYMASEQLPAFSFSDIFEVAHNSSEVLNQWTTVGASGAVYAILLAFGMIFPEERIFIFP 168
Query: 170 INVKAIYAPWFEL--IIIYLL----VPNASFK--GHLSGILVGL 205
+ + I A WF + ++I L P S HL G+L G
Sbjct: 169 LPI-PIKAKWFVVGYVVIELFSALSTPGDSVAHFAHLGGMLFGF 211
>gi|253682458|ref|ZP_04863255.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
gi|253562170|gb|EES91622.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
Length = 200
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 59 DAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTS 118
+ ++ Y RLI F HG MHL NM +L G +EK YG K+ ++I+L
Sbjct: 54 NTLVASGQYYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKY--IIIYL----- 106
Query: 119 LYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAP 178
L ++ + F +N S IG S +F++ + L + +K + +
Sbjct: 107 LGGLISSISSFIFSNGVS------IGASGAIFSLLGAILVLTIKMRSVVGKDTIKNVISV 160
Query: 179 WFELIIIYLLVPNASFKGHLSGILVGL 205
I I L +PN H+ G+L G+
Sbjct: 161 IVVNIFIGLAIPNIDNFAHVGGLLGGV 187
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.143 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,653,115,316
Number of Sequences: 23463169
Number of extensions: 144436280
Number of successful extensions: 458134
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 1327
Number of HSP's that attempted gapping in prelim test: 456427
Number of HSP's gapped (non-prelim): 2116
length of query: 242
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 104
effective length of database: 9,121,278,045
effective search space: 948612916680
effective search space used: 948612916680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 75 (33.5 bits)