BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6649
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1
Length = 316
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 123/222 (55%), Gaps = 9/222 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
R R + GL+LLL + H+G + IPP TL + + +LN PW L CIS +
Sbjct: 4 RTRGIDTGLLLLLSQVFHIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
QQ D++RL+LS HGDD HLY+NMVS++ KG +LEK G F ++ ++ T + Y
Sbjct: 60 YQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLTGVVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + + N +CA+GFS VLFA+K + P + IL V +A W E
Sbjct: 120 LLLQFASAELMNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
L I+ P SF GHL+GILVGL YT P L ++D C
Sbjct: 180 LAAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDAC 217
>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1
Length = 315
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 9/222 (4%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAV 61
R R GL+LLL + +G + IPP TL + + +LN PW L CIS +
Sbjct: 4 RTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFLN----PWKPLYHSCISVEKC 59
Query: 62 IQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYY 121
QQ+D++RL+LS HGDD HLY+NMVS++ KG +LE+ G F ++ ++ T + Y
Sbjct: 60 YQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLTGVVY 119
Query: 122 ILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFE 181
+LL + V + N +CA+GFS VLFA+K + P + IL V +A W E
Sbjct: 120 LLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFACWAE 179
Query: 182 LIIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
L+ I+ P SF GHL+GILVGL YT P L ++D C
Sbjct: 180 LVAIHFCTPGTSFAGHLAGILVGLMYTQGP----LKKIMDTC 217
>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1
Length = 315
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQ+D++RL+LS H DD HLY+NM S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GHL+GILVGL YT P L +++ C
Sbjct: 181 VAIHLFSPGTSFAGHLAGILVGLMYTQGP----LKKIMEAC 217
>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1
Length = 318
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 121/221 (54%), Gaps = 7/221 (3%)
Query: 3 RPRRYELGLILLLVHILHLGADTIPPATLGLVFLQSMVYLNIFRKPWSTLDVCISADAVI 62
R R GLILLL I H+G + IPP TL + L +LN + +S+ C+S +
Sbjct: 4 RSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIWFFLNPQKPLYSS---CLSVEKCY 60
Query: 63 QQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYI 122
QQRD++RL+LS H DD HLY+N S++ KG LE+ G F ++ +V T + Y+
Sbjct: 61 QQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLERRLGSRWFAYVITTFSVLTGVVYL 120
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFEL 182
LL + V ++ CA+GFS VLFA+K + P + IL V +A W EL
Sbjct: 121 LLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVEL 180
Query: 183 IIIYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKC 223
+ I+L P SF GH +GILVGL YT P L +++ C
Sbjct: 181 VAIHLFSPGTSFAGHQAGILVGLMYTQGP----LKKIMEAC 217
>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana
GN=At3g17611 PE=2 SV=1
Length = 334
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 27 PPATLGLVFLQSMVYLN-IFRKP--WSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHL 83
PP T L+ ++VYL F P +V + + + +D KRL LSAF H ++ HL
Sbjct: 33 PPVTASLLAANTLVYLRPAFIDPVIPHISEVWFNPHLIFKHKDLKRLFLSAFYHVNEPHL 92
Query: 84 YYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFT-SLYYILLAYIVFYITNDTSELSHCA 142
YNM+SL+ KG +LE G +F S+V L + + +L ++ D + + A
Sbjct: 93 VYNMMSLLWKGIKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDRAYYNEYA 152
Query: 143 IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGIL 202
+GFS VLFAMK +L Q + Y + I V YA W ELI++ + VPNASF GHL GIL
Sbjct: 153 VGFSGVLFAMKVVLNS-QAEDYSSVYGILVPTKYAAWAELILVQMFVPNASFLGHLGGIL 211
Query: 203 VGLTY 207
G+ Y
Sbjct: 212 AGIIY 216
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 24 DTIPPATLGLVFLQSMVYLNIFRKPWSTL-DVCISADAVIQQRDYKRLILSAFEHGDDMH 82
+ IP T +V + ++YL + T +VC A+I + R + HG +H
Sbjct: 20 NAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLH 79
Query: 83 LYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSH-- 140
+ +NM++L+ G +LE+I G + L L + L ++ ++L+A + Y N + H
Sbjct: 80 VLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGY--NPFYQYDHLM 137
Query: 141 --CAIGFSAVLFAMKTILTRLQPDAYQQILNI-NVKAIYAPWFELIIIYLLVPNASFKGH 197
CAIGFS +LF+M I T L + + + NV A PW LI+ LL+ N S GH
Sbjct: 138 NECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGH 197
Query: 198 LSGILVGLTYT 208
L GIL G +Y+
Sbjct: 198 LCGILSGFSYS 208
>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RBD2 PE=3 SV=1
Length = 297
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 27 PPA-TLGLVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
PPA +LGL ++++L R W D+ + + A + + R+ H HL
Sbjct: 17 PPALSLGLPIFLTVIFLLSQRYVWIEDDLELRSTA-LTNFELNRISFYPLVHATWFHLLL 75
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCA--- 142
N+V+L Q E++ G + ++ L V T++ + LL+ F D + L A
Sbjct: 76 NLVALQPIVSQFERVNGTVRTGIVLNILAVVTAIPWCLLSIGFF---PDEAVLGSSAWIF 132
Query: 143 --IGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSG 200
+G+ A+ + K T+L P N+ V P L++I +++P++SF GHL G
Sbjct: 133 SFMGYWAIRESSKQPTTQLAP-------NLVVPTWLLPIIYLVVIAIVIPSSSFIGHLLG 185
Query: 201 ILVG 204
++ G
Sbjct: 186 LIAG 189
>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rbd2 PE=3 SV=2
Length = 251
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 50 STLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG-WGKFLS 108
ST + +S ++Q+R +I H +H+ +N VSL+ Q EK G L
Sbjct: 39 STGVLSLSWIGLLQKRQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILV 98
Query: 109 LVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL 168
VI T+F + ++++ + F++ D ++ G S FA + P
Sbjct: 99 TVIPYTLFPGIMHLIVYH--FFLRKDYVSIA----GLSGWAFAFISASCVHSPQRLISFF 152
Query: 169 NI-NVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
N+ ++ A P LI+ +LVP ASF GH SG ++G
Sbjct: 153 NLFSIPAYCFPIIYLIMTTILVPKASFIGHASGAVMG 189
>sp|Q12270|RBD2_YEAST Rhomboid protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=RBD2 PE=1 SV=1
Length = 262
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 27 PPATL--GLVFLQSMVYLNIF----RKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDD 80
PPA L GLV + +YL F R+ D+ ++ +++ + + RL L H
Sbjct: 13 PPAALTTGLVVFLTAIYLLSFIFALRE-----DLSLAPESLFKLQ-MSRLSLYPLIHLSL 66
Query: 81 MHLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSE 137
HL +N++++ E+ +G G FL+L +F + Y LL +++
Sbjct: 67 PHLLFNVLAIWAPLNLFEETHGTVYTGVFLNLS---ALFAGILYCLLGKLLY-----PEA 118
Query: 138 LSHCAIGFSAVLFAMKTIL-TRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKG 196
L A G+ LFA + ++++P + ++ +Y P L+ I +++P +SF G
Sbjct: 119 LVAGASGWCFTLFAYYSFKESQIRPRTRIFRTDYSIPTLYTPLVLLVAIAVVIPGSSFWG 178
Query: 197 HLSGILVG--LTYTD------TPIGWGLDYVVDKCQEMING 229
H G+ VG + Y + TP GW ++ K ++ ++G
Sbjct: 179 HFFGLCVGYAIGYKESWFNKITPPGW----IITKIEKSLDG 215
>sp|Q8VEK2|RHBD2_MOUSE Rhomboid domain-containing protein 2 OS=Mus musculus GN=Rhbdd2 PE=2
SV=1
Length = 361
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
L L S L + + P + + + ++A+ + Y RL+ F + + + L + +
Sbjct: 27 LSLLVSGPRLFLLQPPLAPSGLSLRSEALRNWQVY-RLVTYIFVYENPVSLLCGAIIIWR 85
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC--AIGFSAVLF 150
E+ G + + TVF+++ Y+ F + S+L A GF+ V F
Sbjct: 86 FAGNFERTVGTVRHCFFTLIFTVFSAIIYL-----SFESVSSLSKLGEVEDARGFTPVAF 140
Query: 151 AM---KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
AM ++ +R++ + + V ++ PW L+ L+P SF ++SG+L+GL+Y
Sbjct: 141 AMLGVTSVRSRMR---RALVFGVVVPSVLVPWL-LLCASWLIPQTSFLSNVSGLLIGLSY 196
>sp|Q4I4A4|RBD2_GIBZE Rhomboid protein 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620
/ FGSC 9075 / NRRL 31084) GN=RBD2 PE=3 SV=1
Length = 267
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 24/165 (14%)
Query: 72 LSAFE--HGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF---LTVFTSLYYILLAY 126
LS F H + +H N+++L + E +G SL +F LT ++ Y+L+
Sbjct: 64 LSTFPLIHLNVIHAILNLLALTPLMERFETEHG--TLTSLALFFGPLTSIPAVAYVLIER 121
Query: 127 IVFYITNDTSELSHCAIGFSA---VLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELI 183
+F +H +G S L AM++I T + + + I ++N+ P +
Sbjct: 122 CIF-------RANHGVLGASMWVFTLLAMESIQT-YKSNPHFVIGSVNIPTWTTPLIMSL 173
Query: 184 IIYLLVPNASFKGHLSGILV----GLTYTD--TPIGWGLDYVVDK 222
++ L+P S GHL GI + G Y P WGL +V ++
Sbjct: 174 VVAALIPGTSLLGHLCGIAIGYVAGFGYAKLLAPPEWGLRWVENR 218
>sp|Q7S4V5|RBD2_NEUCR Rhomboid protein 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rbd-2
PE=3 SV=1
Length = 276
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 75 FEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITND 134
F H + H N+V+ + E +G S+ +F F ++ ++ ++ +I +
Sbjct: 79 FIHLNIFHTILNIVAFTPLLERFEHEHG--TLTSVALFFGPFATIPGLIYVFVERFILHA 136
Query: 135 TSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASF 194
+ + ++ + +L M+ I T + + Y I N+ P +++ L+P++SF
Sbjct: 137 NTPVMGASM-WVFLLLGMEAIRTY-KTNPYFTISTYNIPTWITPLLLVVVTAALLPSSSF 194
Query: 195 KGHLSGILV----GLTYTD--TPIGWGLDYVVDKCQ 224
GHL+G+LV GL Y P W L ++ K
Sbjct: 195 LGHLAGLLVGYGFGLGYLKFLAPPEWALRFIEGKLN 230
>sp|Q6BSA9|RBD2_DEBHA Rhomboid protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RBD2 PE=3
SV=2
Length = 286
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D RL H H N+V L E+ G TVFT + +LA
Sbjct: 61 DLNRLSFYLLFHRGFTHWLLNVVGLFSPLAIFERTNG-----------TVFTGVTLNVLA 109
Query: 126 YIV---FYITNDTSELSHCAIGFSAVLFAMKTILT----RLQPDAYQ---QILNINVKAI 175
F I + IG S V+F+ + + P Y Q +++ +
Sbjct: 110 VTAGLQFCIVGKLLYPNTQVIGLSGVVFSFMSFMAYKEHHTTPVIYTFKYQGSEVSIPTL 169
Query: 176 YAPWFELIIIYLLVPNASFKGHLSGI----LVGLTYTD--TPIGWGLDYVVDKCQEMING 229
Y+P+ LI+ +L+P +SF GHL+GI L+ L Y P + ++ K Q IN
Sbjct: 170 YSPFIFLIVCMVLIPGSSFWGHLAGISSGYLLALGYIKFLYPPSKAILFIERKLQTPINA 229
Query: 230 EE------QEDMGEEQK 240
+E+ EQ+
Sbjct: 230 LRSLVVYYKEEEAIEQR 246
>sp|Q6CR06|RBD2_KLULA Rhomboid protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RBD2 PE=3 SV=1
Length = 271
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGW---GKFLSLVIFLTVFTSLYYI 122
D R+ L H HL++N++S E+ +G G L+L L VFT++ Y
Sbjct: 53 DLNRISLYPLAHLSFFHLFFNVISTFSMIVMFEESHGTLYTGVILNL---LAVFTAIPYC 109
Query: 123 LLAYIVFYITNDTSELSHCAIGFSAVL--FAMKTILTRLQPDAYQQILNINVKAIYAPWF 180
L+ ++F E+ + F + L FA+K R ++ + +Y P
Sbjct: 110 LIGSLLF----PNVEIGGASGWFFSFLGYFAVKESRVR---NSVMITSTFSFPTLYFPVA 162
Query: 181 ELIIIYLLVPNASFKGHLSGILVG 204
L + LL P +S GH G+L+G
Sbjct: 163 LLFVTALLAPGSSLPGHAIGLLLG 186
>sp|Q4WLP9|RBD2_ASPFU Rhomboid protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rbd2 PE=3 SV=1
Length = 272
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIF-LTVFTSLYYILLAYI 127
RL F H H + N+++L + E +G ++L I L+ F + YIL+
Sbjct: 67 RLNTYPFIHVGFFHAFVNLLALTPLLERFEAEHGTLTAVALFIGPLSTFPAGIYILVEK- 125
Query: 128 VFYITNDTSELSHCAIGFSAVLFAM--KTILTRLQPDAYQQILNINVKAIYAPWFELIII 185
F + ++T+ +G S +F + + + + Y + + +P F ++
Sbjct: 126 -FILRSNTA-----VVGASVWIFLLLGSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALV 179
Query: 186 YLLVPNASFKGHLSGILVG 204
+ VPN SF GHLS I++G
Sbjct: 180 SIFVPNTSFLGHLSAIIIG 198
>sp|Q6NTF9|RHBD2_HUMAN Rhomboid domain-containing protein 2 OS=Homo sapiens GN=RHBDD2 PE=2
SV=2
Length = 364
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 33 LVFLQSMVYLNIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLIL 92
L L S L + ++P + + + ++A+ + Y RL+ F + + + L + +
Sbjct: 27 LSLLVSGPRLFLLQQPLAPSGLTLKSEALRNWQVY-RLVTYIFVYENPISLLCGAIIIWR 85
Query: 93 KGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHC--AIGFSAVLF 150
E+ G + + +F+++ ++ F + S+L A GF+ V F
Sbjct: 86 FAGNFERTVGTVRHCFFTVIFAIFSAIIFL-----SFEAVSSLSKLGEVEDARGFTPVAF 140
Query: 151 AM---KTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGLTY 207
AM T+ +R++ + + V ++ PW L+ L+P SF ++ G+ +GL Y
Sbjct: 141 AMLGVTTVRSRMR---RALVFGMVVPSVLVPWL-LLGASWLIPQTSFLSNVCGLSIGLAY 196
>sp|O14364|YOHB_SCHPO Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1
Length = 298
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 70 LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVF 129
+I+SAF H HL +NMV+ + ++G +F++ I +F+++ +L + F
Sbjct: 122 MIVSAFSHQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISSILFSNVASLLHHRLRF 181
Query: 130 YITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQIL 168
++++ ++G S ++A+ + P+A I+
Sbjct: 182 -----GTKVTPGSLGASGAIYAIAAATSYFFPNASVSII 215
>sp|Q5AH12|RBD2_CANAL Rhomboid protein 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RBD2 PE=3 SV=1
Length = 284
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 113 LTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTIL----TRLQPDAY---- 164
LTV +L Y ++ ++FY IG S + F++ + + ++ +P +
Sbjct: 103 LTVIAALQYCIVG-LIFYPNTG-------VIGLSGIAFSLMSYMAYHESKFRPIMHTFHL 154
Query: 165 QQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVG 204
L I + +Y P+ I+ +L P++S GHL GI G
Sbjct: 155 SNSLEIKLYTLYVPFVVAIVFMILFPSSSLPGHLFGITTG 194
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 28/147 (19%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIV 128
R I+ F H +H+ +N++ + G +E++ GW ++ L Y+
Sbjct: 253 RFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRY-----------GLVYLSSGIWG 301
Query: 129 FYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYL- 187
F + + + + G S LF + + + N PW ELII+ L
Sbjct: 302 FVLGGNYAGQGEASCGCSGALFGILALFVLDLLYGWNDRQN--------PWVELIIMVLG 353
Query: 188 --------LVPNASFKGHLSGILVGLT 206
L+P HL G +GL
Sbjct: 354 IAVSFVLGLLPGLDNFSHLGGFTMGLA 380
>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1
Length = 346
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 25/174 (14%)
Query: 64 QRDYK----RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSL 119
Q+DY +I SAF H + HL NM++L G L + G F SL + + SL
Sbjct: 176 QKDYVTSKISIIGSAFSHQEFWHLGMNMLALWSFGTSLATMLGASNFFSLYMNSAIAGSL 235
Query: 120 YYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIYAPW 179
+ + +Y + ++G S LF + + L P A +IL W
Sbjct: 236 FSL------WYPKLARLAIVGPSLGASGALFGVLGCFSYLFPHA--KILLFVFPVPGGAW 287
Query: 180 FELII--------IYLLVPNASFKGHLSGILVGLTYTDTPIGWGLDYVVDKCQE 225
+ L + + HL G ++G+ Y GW + V+K ++
Sbjct: 288 VAFLASVAWNAAGCALRWGSFDYAAHLGGSMMGVLY-----GWYISKAVEKQRQ 336
>sp|Q48BF2|YIDC_PSE14 Membrane protein insertase YidC OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=yidC PE=3 SV=1
Length = 563
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+L L +HGDD M +++ + EKI G L +++ + VF SLY++LL +
Sbjct: 409 KLALLKEQHGDDRQ---KMSQAMMELYKKEKINPLGGCLPILVQMPVFLSLYWVLLESV 464
>sp|Q4ZL11|YIDC_PSEU2 Membrane protein insertase YidC OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=yidC PE=3 SV=1
Length = 563
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 69 RLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
+L L +HGDD M +++ + EKI G L +++ + VF SLY++LL +
Sbjct: 409 KLALLKEQHGDDRQ---KMSQAMMELYKKEKINPLGGCLPILVQMPVFLSLYWVLLESV 464
>sp|Q6FSG0|RBD2_CANGA Rhomboid protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RBD2 PE=3 SV=1
Length = 266
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 66 DYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLA 125
D +L L H +HL +N ++++ E +G I V +L ++ A
Sbjct: 54 DLGKLSLYPLMHLSYLHLVFNALAIVGPLNNFESSHG-------TIHTGVVLNLSAVI-A 105
Query: 126 YIVFYITNDTSELSHCAIGFSAVLFAMKTIL--------TRLQPDAYQQILNINVKAIYA 177
I++ + + L G S +F T L RL+ + + ++ +
Sbjct: 106 GIIYCVVSRLLSLETGVAGASGWVFTFITYLCVKESQLYPRLELSRFIPGVTQSIPTQFT 165
Query: 178 PWFELIIIYLLVPNASFKGHLSGILVG--LTYTDT------PIGWGLDYVVDKCQEMIN 228
P L+ ++ +SF GH +G++VG + Y +T P W ++ + +K +IN
Sbjct: 166 PVVFLLFTAIVFFQSSFLGHTAGMIVGYIMGYGETWFNILIPPAWIIEKIEEKADPLIN 224
>sp|Q11VC5|NUON_CYTH3 NADH-quinone oxidoreductase subunit N OS=Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469) GN=nuoN PE=3 SV=1
Length = 457
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 98 EKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT--- 154
E I+ +L L+ L S+YY I Y + S L++ A GF++V+ A+ +
Sbjct: 381 EVIHAGNIYLVLIAILGSLISVYYYFKTIIAMYSGEEVSTLTNPAFGFTSVILAIMSALV 440
Query: 155 ILTRLQPDAYQQI-LNI 170
+L L PD QI +NI
Sbjct: 441 VLIGLFPDILLQIGMNI 457
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 30.8 bits (68), Expect = 8.2, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 67 YKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAY 126
+ RL LS F H +H ++V + R LEK+ GW + ++++ L+ T LA
Sbjct: 625 FYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHR-IAIIFILSGITG----NLAS 679
Query: 127 IVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNINVKAIY------APWF 180
+F + G A LF +L ++ LN++ ++ PW
Sbjct: 680 AIFLPYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWI 739
Query: 181 ELIIIYLLVPNASFKGHLSGILVGLTY 207
+ I A G LSG+L+ +
Sbjct: 740 DNI--------AHIFGFLSGLLLAFAF 758
>sp|Q0BAQ2|YIDC_BURCM Membrane protein insertase YidC OS=Burkholderia ambifaria (strain
ATCC BAA-244 / AMMD) GN=yidC PE=3 SV=1
Length = 554
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 86 NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYI 127
M S +++ + EK+ +G L +VI + VF SLY++LLA +
Sbjct: 415 KMNSALMELYKTEKVNPFGGCLPVVIQIPVFISLYWVLLASV 456
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.143 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,292,481
Number of Sequences: 539616
Number of extensions: 3328073
Number of successful extensions: 9636
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 9601
Number of HSP's gapped (non-prelim): 48
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)