Query psy6649
Match_columns 242
No_of_seqs 123 out of 1333
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:35:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 9.6E-28 3.3E-32 192.8 14.8 172 24-213 1-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 2.2E-27 7.6E-32 193.0 11.2 173 24-214 6-186 (196)
3 3d9s_A Aquaporin-5, AQP-5; aqu 11.0 95 0.0032 25.3 1.6 19 194-212 208-227 (266)
4 2b6o_A Aquaporin-0, lens fiber 11.0 1.6E+02 0.0056 23.8 3.0 21 192-212 203-224 (263)
5 3iyz_A Aquaporin-4; water tran 8.8 2.1E+02 0.0072 24.3 2.9 21 193-213 250-271 (340)
6 1j4n_A Aquaporin 1; membrane p 6.5 3.2E+02 0.011 22.1 3.0 20 194-213 215-235 (271)
7 2kxa_A Haemagglutinin HA2 chai 6.2 2.7E+02 0.0092 14.4 1.4 6 200-205 4-9 (30)
8 3sqg_A Methyl coenzyme M reduc 4.4 1.5E+03 0.052 20.1 5.8 45 93-154 407-452 (579)
9 2knc_B Integrin beta-3; transm 3.9 6.1E+02 0.021 16.3 2.4 6 199-204 15-20 (79)
10 1hbn_A Methyl-coenzyme M reduc 3.5 1.7E+03 0.058 19.6 5.4 95 93-210 387-499 (549)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=9.6e-28 Score=192.83 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=130.5
Q ss_pred CCCchHHHHHHHHHHHHHHhhhccccc--ccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhh
Q psy6649 24 DTIPPATLGLVFLQSMVYLNIFRKPWS--TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101 (242)
Q Consensus 24 ~~~p~vt~~li~~~v~v~~l~~~~~~~--~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~ 101 (242)
.+.||+|+.++++|+++|++....+.. .+.+.++|+. .+++|+||++|+.|+|.|+.|+++||+.++.+|+.+|+.+
T Consensus 1 ~~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~ 79 (181)
T 2xov_A 1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL 79 (181)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999999988665431 2344556654 4678999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHH---hcCCCcceeEEeeeehhhHHH
Q psy6649 102 GWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILT---RLQPDAYQQILNINVKAIYAP 178 (242)
Q Consensus 102 G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~---~~~p~~~~~i~~i~i~~~~~~ 178 (242)
|++|++.+|+.+++.+++...+. ..+ ..+|+||+++|++++.. ...|+.+.. ++.+.....
T Consensus 80 G~~~fl~~yl~~~i~~~l~~~~~--------~~~-----~~vGaSGai~gl~g~~~~~~~~~p~~~~~---l~~~~~~~~ 143 (181)
T 2xov_A 80 GSGKLIVITLISALLSGYVQQKF--------SGP-----WFGGLSGVVYALMGYVWLRGERDPQSGIY---LQRGLIIFA 143 (181)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--------HCS-----CCCCSHHHHHHHHHHHHHHHHHCGGGSCC---CCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh--------cCC-----CceeHHHHHHHHHHHHHHHHhhCcCceee---eHHHHHHHH
Confidence 99999999999999999976432 122 27899999999998754 356766532 222222221
Q ss_pred HHHHHHHHhh---CCChhHHHHHHHHHHhHHHhhcccc
Q psy6649 179 WFELIIIYLL---VPNASFKGHLSGILVGLTYTDTPIG 213 (242)
Q Consensus 179 ~i~~~~~~~~---~~~~s~~~hl~G~l~G~~~~~~~~~ 213 (242)
.+ .....+. .+++|+.+|++|+++|.+++...+|
T Consensus 144 ~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 144 LI-WIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HH-HHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 11 1122222 3689999999999999999887665
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.94 E-value=2.2e-27 Score=192.98 Aligned_cols=173 Identities=18% Similarity=0.196 Sum_probs=128.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhhccccc--ccchhcchhhhhccCccceeehhhhccCChhHHHHHHHHHHHhHHHHHHhh
Q psy6649 24 DTIPPATLGLVFLQSMVYLNIFRKPWS--TLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYYNMVSLILKGRQLEKIY 101 (242)
Q Consensus 24 ~~~p~vt~~li~~~v~v~~l~~~~~~~--~~~~~~~~~~v~~~~q~wrllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~ 101 (242)
.+.||+|..++++|+++|++....+.. .+.+.+.|+.+ .++|+||++|+.|+|.|+.|+++||+.++.+|..+|+.+
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~ 84 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTF 84 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999988765431 23455666654 678999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHh---cCCCcceeEEeeeehhhHHH
Q psy6649 102 GWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTR---LQPDAYQQILNINVKAIYAP 178 (242)
Q Consensus 102 G~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~---~~p~~~~~i~~i~i~~~~~~ 178 (242)
|++|++.+|+.+++.+++.+.+. ..+ ..+|+||+++|++++... ..|+. +.++.+.....
T Consensus 85 G~~~~l~~yl~~~~~~~l~~~~~--------~~~-----~~vGaSGai~gl~g~~~~~~~~~~~~----~~~~~~~~~~~ 147 (196)
T 2nr9_A 85 GSVKLLMLYVVASAITGYVQNYV--------SGP-----AFFGLSGVVYAVLGYVFIRDKLNHHL----FDLPEGFFTML 147 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH--------HCS-----CCCCSHHHHHHHHHHHHHHHHSSTTS----CCCCCSSTTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh--------cCC-----CeeeHHHHHHHHHHHHHHHHHhcchh----hcchHHHHHHH
Confidence 99999999999999999876432 122 278999999999986543 23332 11222222211
Q ss_pred --HHHHHHHHh-hCCChhHHHHHHHHHHhHHHhhccccc
Q psy6649 179 --WFELIIIYL-LVPNASFKGHLSGILVGLTYTDTPIGW 214 (242)
Q Consensus 179 --~i~~~~~~~-~~~~~s~~~hl~G~l~G~~~~~~~~~~ 214 (242)
++...+... ..+++|+.+|++|+++|.+++....++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~ 186 (196)
T 2nr9_A 148 LVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL 186 (196)
T ss_dssp TTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 111111111 234899999999999999999887654
No 3
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=11.05 E-value=95 Score=25.32 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=9.4
Q ss_pred HHHHHHHH-HHhHHHhhccc
Q psy6649 194 FKGHLSGI-LVGLTYTDTPI 212 (242)
Q Consensus 194 ~~~hl~G~-l~G~~~~~~~~ 212 (242)
|.+.+.|. +++.+|-+...
T Consensus 208 ~vgP~~Ga~la~~~y~~l~~ 227 (266)
T 3d9s_A 208 WVGPIVGAVLAAILYFYLLF 227 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred ehHHHHHHHHHHHHHHHHhC
Confidence 44555444 44455555444
No 4
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=10.96 E-value=1.6e+02 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHh-HHHhhccc
Q psy6649 192 ASFKGHLSGILVG-LTYTDTPI 212 (242)
Q Consensus 192 ~s~~~hl~G~l~G-~~~~~~~~ 212 (242)
+-|.+.+.|.+.| .+|-....
T Consensus 203 vy~vgP~~Ga~la~~~y~~l~~ 224 (263)
T 2b6o_A 203 VYWVGPVIGAGLGSLLYDFLLF 224 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3356666555555 44444433
No 5
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=8.85 E-value=2.1e+02 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=10.7
Q ss_pred hHHHHHH-HHHHhHHHhhcccc
Q psy6649 193 SFKGHLS-GILVGLTYTDTPIG 213 (242)
Q Consensus 193 s~~~hl~-G~l~G~~~~~~~~~ 213 (242)
-|.+-+. |++++++|-+.+.+
T Consensus 250 ywvgPiiGailaallY~~l~~p 271 (340)
T 3iyz_A 250 YWVGPIIGAVLAGALYEYVFCP 271 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHhCC
Confidence 3455444 45555666555433
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=6.53 E-value=3.2e+02 Score=22.08 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=10.2
Q ss_pred HHHHHHHHH-HhHHHhhcccc
Q psy6649 194 FKGHLSGIL-VGLTYTDTPIG 213 (242)
Q Consensus 194 ~~~hl~G~l-~G~~~~~~~~~ 213 (242)
|.+.+.|.+ ++++|-+...+
T Consensus 215 ~vgP~~Ga~la~~~y~~~~~~ 235 (271)
T 1j4n_A 215 WVGPFIGAALAVLIYDFILAP 235 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 556555544 44555554443
No 7
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=6.22 E-value=2.7e+02 Score=14.45 Aligned_cols=6 Identities=33% Similarity=0.960 Sum_probs=2.5
Q ss_pred HHHHhH
Q psy6649 200 GILVGL 205 (242)
Q Consensus 200 G~l~G~ 205 (242)
|+++|+
T Consensus 4 GAIAGf 9 (30)
T 2kxa_A 4 GAIAGF 9 (30)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 444443
No 8
>3sqg_A Methyl coenzyme M reductase, alpha subunit; anaerobic methane oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE P6G; 2.10A {Uncultured archaeon}
Probab=4.36 E-value=1.5e+03 Score=20.07 Aligned_cols=45 Identities=11% Similarity=-0.113 Sum_probs=27.2
Q ss_pred hHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHH
Q psy6649 93 KGRQLEKIYG-WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKT 154 (242)
Q Consensus 93 ~g~~lE~~~G-~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~ 154 (242)
+-..+|.++| |.|.-.+-..+++..++.+ ...-.|.+|.-.+++.
T Consensus 407 yPT~LEdHFGGSQRAsVlAAASGistAiAT-----------------GNSnAGLNGWYLSMLL 452 (579)
T 3sqg_A 407 YPTVAESHFGGSVRACCAAAGCGSAVACAT-----------------GLAQPALSAWSLSMLG 452 (579)
T ss_dssp SHHHHHHTCSHHHHHHHHHHHHHHHHHHHH-----------------SCSHHHHHHHHHHHHH
T ss_pred cccccccCCCCchhhHHhhhhcccceeecc-----------------cCCcccccHHHHHHHH
Confidence 5568899987 6676555544444333332 2234688887777654
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=3.85 E-value=6.1e+02 Score=16.27 Aligned_cols=6 Identities=0% Similarity=0.080 Sum_probs=2.5
Q ss_pred HHHHHh
Q psy6649 199 SGILVG 204 (242)
Q Consensus 199 ~G~l~G 204 (242)
+|.++|
T Consensus 15 ~gvi~g 20 (79)
T 2knc_B 15 LSVMGA 20 (79)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 10
>1hbn_A Methyl-coenzyme M reductase I alpha subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_A* 1hbo_A* 1hbu_A* 3m1v_A* 3m2r_A* 3m2u_A* 3m2v_A* 3m30_A* 3m32_A* 3pot_A* 1mro_A* 1e6v_A*
Probab=3.45 E-value=1.7e+03 Score=19.64 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=47.8
Q ss_pred hHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHHHhcCCCcceeEEeee
Q psy6649 93 KGRQLEKIYG-WGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGFSAVLFAMKTILTRLQPDAYQQILNIN 171 (242)
Q Consensus 93 ~g~~lE~~~G-~~~fl~~~l~~~~~~~l~~~l~~~~~~~~~~~p~~~~~~~~G~Sg~v~all~~~~~~~p~~~~~i~~i~ 171 (242)
+-..+|..+| |.|.-.+-..+++.+++.+ ...-.|.+|.-.+++.-- ....+..++|..
T Consensus 387 yPT~LEdHFGGSQRAaVlAAASGistaiAT-----------------GNSnAGLngWYLSMLLHK---E~wgRLGFyGYD 446 (549)
T 1hbn_A 387 YPALLEDQFGGSXRAAVVAAAAGCSTAFAT-----------------GNAQTGLSGWYLSMYLHK---EQHSRLGFYGYD 446 (549)
T ss_dssp CHHHHHHSCSHHHHHHHHHHHHHHHHHHHH-----------------SCHHHHHHHHHHHHHHHH---HHHTCCSCC-CC
T ss_pred cccccccccCchhHHHHHHHhccceeeecc-----------------ccccccccchhhhhhhhh---hccccccccccc
Confidence 4567888887 6676655544444444432 223467777766654321 122344555544
Q ss_pred ehhhHHHHHHHHHHHh----------hCC-------ChhHHHHHHHHHHhHHHhhc
Q psy6649 172 VKAIYAPWFELIIIYL----------LVP-------NASFKGHLSGILVGLTYTDT 210 (242)
Q Consensus 172 i~~~~~~~i~~~~~~~----------~~~-------~~s~~~hl~G~l~G~~~~~~ 210 (242)
+......- ..... -.| ++.|.+.-.|+..+-=++..
T Consensus 447 LQDQCGsa---Ns~S~r~DEG~~~ElRGpNYPNYAMnvghqgeyagi~~~ah~~r~ 499 (549)
T 1hbn_A 447 LQDQCGAS---NVFSIRGDEGLPLELRGPNYPNYAMNVGHQGEYAGISQAPHAARG 499 (549)
T ss_dssp HHHHHHHH---HHSCCSTTTCCCGGGCCTTSGGGSSCSSSHHHHHHHHHHHHHHHT
T ss_pred cCCcccCC---CcccccCCCCCcccccCCCCcccccccCcccchhhhhhhhhhccC
Confidence 33322110 00000 011 35677777788877766664
Done!