RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6649
         (242 letters)



>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
          Length = 180

 Score = 54.7 bits (131), Expect = 5e-10
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 16/184 (8%)

Query: 27  PPATLGLVFLQSMVYL-NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
            P T  ++    +V++          +           + ++ R    A  H   MH+ +
Sbjct: 4   GPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILF 63

Query: 86  NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
           N++     G  +EK  G GK + + +   + +       +   F              G 
Sbjct: 64  NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF-------------GGL 110

Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIY--LLVPNASFKGHLSGILV 203
           S V++A+   +        Q  + +    I      ++  +  L   + +   H++G+ V
Sbjct: 111 SGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAV 170

Query: 204 GLTY 207
           GL  
Sbjct: 171 GLAM 174


>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 12/182 (6%)

Query: 27  PPATLGLVFLQSMVYL-NIFRKPWSTLDVCISADAVIQQRDYKRLILSAFEHGDDMHLYY 85
              TL L  L  ++Y+          + +        Q  +  R I     H  ++H+ +
Sbjct: 6   GKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILF 65

Query: 86  NMVSLILKGRQLEKIYGWGKFLSLVIFLTVFTSLYYILLAYIVFYITNDTSELSHCAIGF 145
           N+    + G  +E+ +G  K L L +  +  T      ++   F+     S + +  +G+
Sbjct: 66  NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFF---GLSGVVYAVLGY 122

Query: 146 SAVLFAMKTILTRLQPDAYQQILNINVKAIYAPWFELIIIYLLVPNASFKGHLSGILVGL 205
             +   +   L  L    +  +L        +P F                H+SG++VGL
Sbjct: 123 VFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLF--------GVEMGNAAHISGLIVGL 174

Query: 206 TY 207
            +
Sbjct: 175 IW 176


>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia
           coli [TaxId: 562]}
          Length = 145

 Score = 24.7 bits (54), Expect = 9.1
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 70  LILSAFEHGDDMHLYYNMVSLILKGRQLEKIYG 102
           L+L   E  DD      +   +L  R      G
Sbjct: 28  LVLLGVEKDDDEQKANRLCERVLGYRIFSDAEG 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.435 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 899,777
Number of extensions: 39328
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 4
Length of query: 242
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,268,006
Effective search space: 201612954
Effective search space used: 201612954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)