Query psy665
Match_columns 180
No_of_seqs 141 out of 935
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:36:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1581|consensus 100.0 1.3E-33 2.8E-38 226.6 15.4 175 1-175 150-325 (327)
2 KOG1580|consensus 100.0 6.8E-32 1.5E-36 210.4 10.8 166 1-167 152-317 (337)
3 PF08449 UAA: UAA transporter 100.0 7.5E-29 1.6E-33 204.3 18.9 169 1-169 131-303 (303)
4 KOG1582|consensus 99.9 5.6E-27 1.2E-31 186.1 11.3 160 2-165 174-334 (367)
5 KOG1583|consensus 99.8 1.8E-20 3.8E-25 149.3 11.0 149 18-169 160-320 (330)
6 PF03151 TPT: Triose-phosphate 99.8 2.1E-18 4.6E-23 128.1 15.3 141 23-163 1-153 (153)
7 TIGR00817 tpt Tpt phosphate/ph 99.8 5.8E-18 1.2E-22 139.2 15.3 151 16-166 139-296 (302)
8 PLN00411 nodulin MtN21 family 99.8 7.5E-17 1.6E-21 135.9 18.2 146 20-170 187-335 (358)
9 PRK10532 threonine and homoser 99.7 1.4E-15 3E-20 124.8 17.4 145 19-172 145-290 (293)
10 PTZ00343 triose or hexose phos 99.7 1.2E-15 2.6E-20 128.3 17.4 149 16-164 188-349 (350)
11 KOG1441|consensus 99.7 1.4E-16 3E-21 131.3 7.6 155 14-171 155-315 (316)
12 PRK11689 aromatic amino acid e 99.7 6.1E-15 1.3E-19 121.2 16.5 137 19-165 153-289 (295)
13 PRK11453 O-acetylserine/cystei 99.7 1.7E-14 3.6E-19 118.7 18.6 148 19-166 140-290 (299)
14 TIGR00803 nst UDP-galactose tr 99.6 8.2E-15 1.8E-19 115.7 10.8 141 18-161 81-222 (222)
15 KOG1444|consensus 99.6 1.9E-14 4.1E-19 117.3 11.0 162 15-177 150-314 (314)
16 TIGR00950 2A78 Carboxylate/Ami 99.6 1.9E-13 4.1E-18 109.5 16.7 135 18-158 124-259 (260)
17 PF06027 DUF914: Eukaryotic pr 99.6 5.1E-14 1.1E-18 117.3 12.5 160 4-168 149-310 (334)
18 PRK11272 putative DMT superfam 99.6 3.5E-13 7.6E-18 110.5 17.2 141 19-166 147-288 (292)
19 PRK15430 putative chlorampheni 99.5 1.5E-12 3.3E-17 107.0 16.0 142 25-172 152-294 (296)
20 PF00892 EamA: EamA-like trans 99.4 2E-12 4.4E-17 91.8 11.6 124 32-162 1-125 (126)
21 KOG1442|consensus 99.4 2.6E-13 5.7E-18 108.5 3.9 156 16-171 179-335 (347)
22 COG2510 Predicted membrane pro 99.3 1E-11 2.2E-16 89.0 9.8 133 24-161 5-137 (140)
23 PRK15430 putative chlorampheni 99.3 4.6E-10 1E-14 92.3 19.0 142 17-162 3-144 (296)
24 TIGR03340 phn_DUF6 phosphonate 99.3 3.1E-11 6.6E-16 98.5 9.4 135 19-160 141-280 (281)
25 COG0697 RhaT Permeases of the 99.2 7E-10 1.5E-14 89.3 16.5 135 20-164 152-288 (292)
26 TIGR00688 rarD rarD protein. T 99.2 1.2E-09 2.6E-14 87.7 17.4 138 22-162 2-141 (256)
27 COG5070 VRG4 Nucleotide-sugar 99.2 8.2E-11 1.8E-15 92.0 8.7 152 22-173 155-306 (309)
28 KOG2234|consensus 99.2 1.6E-09 3.6E-14 89.7 15.4 150 15-168 176-327 (345)
29 TIGR03340 phn_DUF6 phosphonate 99.1 3.1E-09 6.7E-14 86.6 14.3 133 24-163 3-135 (281)
30 PF04142 Nuc_sug_transp: Nucle 99.1 5.4E-09 1.2E-13 84.0 13.5 134 17-154 109-244 (244)
31 KOG4510|consensus 99.0 4.7E-10 1E-14 89.9 5.0 155 4-165 172-327 (346)
32 KOG2765|consensus 98.9 4.8E-09 1E-13 87.4 9.3 170 2-172 227-399 (416)
33 TIGR00776 RhaT RhaT L-rhamnose 98.9 3.4E-08 7.5E-13 81.1 14.3 131 20-164 150-289 (290)
34 COG5006 rhtA Threonine/homoser 98.9 3.6E-08 7.9E-13 78.5 13.0 142 16-165 142-284 (292)
35 PF13536 EmrE: Multidrug resis 98.9 1.3E-07 2.8E-12 67.0 14.0 103 61-166 6-109 (113)
36 PLN00411 nodulin MtN21 family 98.9 1.9E-07 4.2E-12 78.9 16.3 137 24-164 15-157 (358)
37 KOG1443|consensus 98.9 9.2E-08 2E-12 78.0 13.3 146 16-161 158-313 (349)
38 PRK02971 4-amino-4-deoxy-L-ara 98.8 1.6E-07 3.4E-12 68.4 13.3 118 22-163 2-122 (129)
39 TIGR00950 2A78 Carboxylate/Ami 98.7 4E-07 8.6E-12 72.8 13.9 118 34-163 1-119 (260)
40 COG2962 RarD Predicted permeas 98.7 2.1E-06 4.5E-11 69.8 17.8 133 34-173 160-293 (293)
41 COG2962 RarD Predicted permeas 98.7 7.6E-07 1.6E-11 72.3 15.1 145 18-167 3-148 (293)
42 PRK11272 putative DMT superfam 98.7 1.3E-06 2.8E-11 71.7 16.4 130 24-163 10-141 (292)
43 PTZ00343 triose or hexose phos 98.7 1.4E-06 3E-11 73.5 16.7 139 19-162 46-185 (350)
44 PF08449 UAA: UAA transporter 98.6 9.6E-07 2.1E-11 72.8 13.0 127 37-170 15-143 (303)
45 TIGR00776 RhaT RhaT L-rhamnose 98.6 6.3E-07 1.4E-11 73.7 11.6 132 23-165 2-138 (290)
46 TIGR00817 tpt Tpt phosphate/ph 98.6 3.8E-06 8.3E-11 69.0 16.1 124 32-161 12-135 (302)
47 PRK11689 aromatic amino acid e 98.6 2.9E-06 6.3E-11 69.7 14.8 130 22-163 4-137 (295)
48 PRK11453 O-acetylserine/cystei 98.6 5.3E-06 1.1E-10 68.2 15.8 124 25-163 7-132 (299)
49 PRK15051 4-amino-4-deoxy-L-ara 98.4 4.2E-06 9.2E-11 59.3 10.2 63 99-161 45-107 (111)
50 COG0697 RhaT Permeases of the 98.3 6.4E-05 1.4E-09 60.3 16.8 141 19-165 4-145 (292)
51 PF06027 DUF914: Eukaryotic pr 98.3 2.2E-05 4.7E-10 65.9 12.3 78 89-166 77-154 (334)
52 KOG3912|consensus 98.2 3.4E-05 7.4E-10 62.7 12.6 148 15-162 169-333 (372)
53 TIGR00688 rarD rarD protein. T 98.2 5.2E-05 1.1E-09 60.8 12.9 105 26-138 150-255 (256)
54 PRK10532 threonine and homoser 98.2 0.0004 8.6E-09 57.0 17.8 105 21-135 11-115 (293)
55 PRK13499 rhamnose-proton sympo 98.1 0.00023 5E-09 59.9 15.5 138 19-164 4-154 (345)
56 PRK10452 multidrug efflux syst 98.1 4.1E-05 9E-10 55.0 8.8 67 98-164 37-104 (120)
57 PF04142 Nuc_sug_transp: Nucle 98.0 2.6E-05 5.7E-10 62.7 7.7 82 87-168 13-94 (244)
58 PF04657 DUF606: Protein of un 98.0 0.00083 1.8E-08 49.4 14.5 130 24-159 3-137 (138)
59 KOG2766|consensus 97.9 5E-06 1.1E-10 66.7 2.5 149 7-163 151-299 (336)
60 PRK10650 multidrug efflux syst 97.9 0.0011 2.4E-08 46.8 13.0 64 98-161 42-106 (109)
61 PF05653 Mg_trans_NIPA: Magnes 97.8 0.00027 5.7E-09 58.6 10.6 119 18-162 3-121 (300)
62 PF06800 Sugar_transport: Suga 97.8 0.00022 4.8E-09 58.0 9.3 116 49-170 9-129 (269)
63 PF06800 Sugar_transport: Suga 97.7 0.0018 3.9E-08 52.7 14.2 131 16-159 132-267 (269)
64 PRK09541 emrE multidrug efflux 97.7 0.00037 8E-09 49.3 8.8 65 99-163 38-103 (110)
65 PRK11431 multidrug efflux syst 97.6 0.0014 3.1E-08 46.0 9.9 64 98-161 36-100 (105)
66 COG3238 Uncharacterized protei 97.5 0.006 1.3E-07 45.4 13.3 136 20-161 3-144 (150)
67 PF00893 Multi_Drug_Res: Small 97.4 0.00092 2E-08 45.8 7.2 55 100-154 38-93 (93)
68 COG2076 EmrE Membrane transpor 97.3 0.0027 5.8E-08 44.5 8.7 65 99-163 38-103 (106)
69 KOG2234|consensus 97.2 0.019 4.1E-07 48.2 14.3 146 22-168 15-169 (345)
70 PF10639 UPF0546: Uncharacteri 96.9 0.0062 1.3E-07 43.2 7.5 106 31-160 5-111 (113)
71 COG4975 GlcU Putative glucose 96.6 0.00042 9.1E-09 55.4 -0.7 136 23-170 3-143 (288)
72 PF06379 RhaT: L-rhamnose-prot 96.4 0.26 5.6E-06 41.5 14.9 140 18-164 3-154 (344)
73 KOG1581|consensus 96.1 0.064 1.4E-06 44.3 9.3 127 35-168 27-160 (327)
74 KOG1441|consensus 95.8 0.35 7.5E-06 40.5 12.9 144 18-165 12-179 (316)
75 KOG4510|consensus 95.6 0.0058 1.3E-07 49.7 1.6 68 95-162 101-168 (346)
76 KOG3912|consensus 95.0 0.083 1.8E-06 43.4 6.3 66 97-162 92-157 (372)
77 KOG4314|consensus 94.7 0.46 1E-05 37.2 9.4 143 17-163 130-276 (290)
78 PF07857 DUF1632: CEO family ( 94.6 0.053 1.1E-06 43.9 4.4 133 23-169 1-140 (254)
79 PRK13499 rhamnose-proton sympo 93.1 5 0.00011 34.0 15.0 147 16-164 168-342 (345)
80 KOG1580|consensus 92.6 0.18 3.9E-06 40.5 4.0 60 106-165 100-159 (337)
81 KOG1444|consensus 92.3 5.6 0.00012 33.2 12.4 138 20-162 10-148 (314)
82 PF05653 Mg_trans_NIPA: Magnes 90.8 0.79 1.7E-05 38.0 6.2 76 86-162 208-291 (300)
83 KOG4314|consensus 90.7 0.1 2.2E-06 40.9 0.8 63 102-164 64-126 (290)
84 PRK02237 hypothetical protein; 90.3 4.7 0.0001 28.3 8.7 47 119-165 61-107 (109)
85 KOG2765|consensus 90.2 0.27 5.9E-06 41.8 3.0 73 94-166 162-234 (416)
86 PF07168 Ureide_permease: Urei 88.8 0.24 5.3E-06 41.0 1.6 133 27-164 1-147 (336)
87 KOG2922|consensus 88.7 0.27 5.8E-06 41.0 1.8 123 15-163 14-136 (335)
88 PF02694 UPF0060: Uncharacteri 87.8 3.8 8.2E-05 28.7 6.8 46 120-165 60-105 (107)
89 COG4975 GlcU Putative glucose 84.7 0.13 2.9E-06 41.4 -1.9 136 14-161 144-283 (288)
90 PF04342 DUF486: Protein of un 84.6 1.5 3.2E-05 30.7 3.4 29 132-160 77-105 (108)
91 COG3086 RseC Positive regulato 84.4 4.4 9.6E-05 30.0 6.0 30 111-140 68-97 (150)
92 PF04971 Lysis_S: Lysis protei 82.8 2.8 6E-05 26.9 3.9 35 140-174 25-65 (68)
93 PF15099 PIRT: Phosphoinositid 82.6 1.6 3.5E-05 31.4 3.1 23 140-162 74-96 (129)
94 COG3169 Uncharacterized protei 82.6 4 8.6E-05 28.3 4.8 38 124-161 72-113 (116)
95 PF07444 Ycf66_N: Ycf66 protei 80.9 2.4 5.3E-05 28.4 3.3 34 142-175 4-37 (84)
96 PF06946 Phage_holin_5: Phage 78.2 19 0.00041 24.6 8.1 63 108-170 21-87 (93)
97 PRK00052 prolipoprotein diacyl 77.6 26 0.00055 28.5 9.0 22 143-164 237-258 (269)
98 PF11044 TMEMspv1-c74-12: Plec 77.2 3.7 7.9E-05 24.0 2.8 16 144-159 3-18 (49)
99 KOG2766|consensus 74.1 0.84 1.8E-05 37.2 -0.5 135 17-163 13-150 (336)
100 PF06966 DUF1295: Protein of u 73.5 6.9 0.00015 31.2 4.6 29 142-170 116-144 (235)
101 cd01324 cbb3_Oxidase_CcoQ Cyto 72.6 3.2 7E-05 24.7 1.9 26 151-176 19-44 (48)
102 PRK06638 NADH:ubiquinone oxido 71.7 45 0.00097 25.9 10.0 37 132-168 133-169 (198)
103 PF01350 Flavi_NS4A: Flaviviru 71.3 28 0.00061 25.7 7.0 88 85-177 42-129 (144)
104 PRK13108 prolipoprotein diacyl 69.2 39 0.00085 29.9 8.6 23 143-165 254-276 (460)
105 PF05545 FixQ: Cbb3-type cytoc 66.0 5.2 0.00011 23.7 1.9 20 151-170 18-37 (49)
106 PF04246 RseC_MucC: Positive r 65.5 20 0.00043 25.8 5.3 43 118-161 68-113 (135)
107 TIGR00544 lgt prolipoprotein d 65.3 75 0.0016 26.0 9.2 23 143-165 246-268 (278)
108 PRK12437 prolipoprotein diacyl 64.6 61 0.0013 26.3 8.5 23 143-165 235-257 (269)
109 COG1742 Uncharacterized conser 64.0 32 0.00069 24.1 5.6 45 121-165 62-106 (109)
110 COG5070 VRG4 Nucleotide-sugar 61.7 71 0.0015 25.8 7.9 59 110-168 87-145 (309)
111 TIGR00905 2A0302 transporter, 60.7 1.1E+02 0.0025 26.5 12.2 41 126-167 397-438 (473)
112 KOG2922|consensus 57.3 43 0.00094 28.2 6.4 75 87-161 223-304 (335)
113 PF14981 FAM165: FAM165 family 55.8 18 0.0004 21.3 2.9 14 152-165 21-34 (51)
114 COG1971 Predicted membrane pro 54.0 41 0.00088 26.1 5.4 33 126-158 49-82 (190)
115 PF01066 CDP-OH_P_transf: CDP- 53.2 67 0.0015 21.6 6.0 44 119-165 4-47 (101)
116 KOG1442|consensus 53.2 2.6 5.7E-05 34.7 -1.3 110 51-160 60-171 (347)
117 PF06011 TRP: Transient recept 51.0 1.4E+02 0.0031 25.8 9.0 38 121-158 356-396 (438)
118 PRK11357 frlA putative fructos 50.0 1.4E+02 0.0031 25.6 8.8 20 149-168 419-438 (445)
119 PF09577 Spore_YpjB: Sporulati 49.9 30 0.00065 27.7 4.2 29 146-174 201-230 (232)
120 PRK11469 hypothetical protein; 48.8 61 0.0013 24.9 5.7 38 117-154 40-77 (188)
121 PRK05886 yajC preprotein trans 48.3 20 0.00044 25.2 2.7 14 152-165 10-23 (109)
122 TIGR00739 yajC preprotein tran 48.3 15 0.00032 24.5 1.9 9 152-160 9-17 (84)
123 PRK11562 nitrite transporter N 47.8 8.9 0.00019 31.3 0.9 37 142-179 228-264 (268)
124 PF15108 TMEM37: Voltage-depen 47.6 62 0.0013 24.4 5.3 52 15-66 115-167 (184)
125 PRK05585 yajC preprotein trans 46.5 20 0.00044 25.0 2.5 10 151-160 23-32 (106)
126 TIGR00769 AAA ADP/ATP carrier 45.7 2.2E+02 0.0047 25.3 14.4 68 98-165 313-387 (472)
127 TIGR03810 arg_ornith_anti argi 44.2 2.1E+02 0.0047 24.8 12.0 31 136-167 403-433 (468)
128 PF11346 DUF3149: Protein of u 44.1 52 0.0011 19.0 3.5 31 138-168 6-37 (42)
129 PF04246 RseC_MucC: Positive r 43.5 53 0.0012 23.5 4.4 12 150-161 106-117 (135)
130 PF02439 Adeno_E3_CR2: Adenovi 42.0 38 0.00083 19.1 2.6 23 148-170 13-35 (38)
131 TIGR00803 nst UDP-galactose tr 41.4 38 0.00082 26.2 3.6 48 120-167 7-54 (222)
132 PF14880 COX14: Cytochrome oxi 40.9 18 0.00039 22.3 1.4 24 141-164 14-37 (59)
133 TIGR02840 spore_YtaF putative 40.9 1.3E+02 0.0028 23.4 6.5 45 114-159 30-77 (206)
134 PF04995 CcmD: Heme exporter p 40.8 40 0.00086 19.6 2.8 20 149-168 12-31 (46)
135 MTH00057 ND6 NADH dehydrogenas 39.3 1.7E+02 0.0038 22.3 9.7 39 132-170 132-170 (186)
136 COG0682 Lgt Prolipoprotein dia 39.3 37 0.0008 28.1 3.3 28 145-172 254-281 (287)
137 PF13994 PgaD: PgaD-like prote 37.1 84 0.0018 22.7 4.7 25 143-167 61-85 (138)
138 PF15055 DUF4536: Domain of un 36.4 23 0.0005 21.0 1.2 21 149-169 9-29 (47)
139 PF15061 DUF4538: Domain of un 35.9 63 0.0014 20.0 3.2 18 146-163 8-25 (58)
140 PHA03231 glycoprotein BALF4; P 35.9 1.3E+02 0.0028 28.8 6.6 47 110-156 669-717 (829)
141 PF03899 ATP_synt_I: ATP synth 35.7 78 0.0017 20.8 4.1 36 130-165 12-47 (100)
142 COG4736 CcoQ Cbb3-type cytochr 35.7 33 0.00072 21.5 1.9 23 149-171 16-38 (60)
143 TIGR01167 LPXTG_anchor LPXTG-m 35.6 32 0.00069 18.2 1.7 15 142-156 9-23 (34)
144 TIGR03141 cytochro_ccmD heme e 34.4 68 0.0015 18.5 3.1 17 152-168 16-32 (45)
145 PF13268 DUF4059: Protein of u 33.5 29 0.00064 22.4 1.5 24 154-177 21-44 (72)
146 PF13038 DUF3899: Domain of un 33.3 67 0.0015 21.3 3.4 19 145-163 4-22 (92)
147 PRK10655 potE putrescine trans 33.2 3.1E+02 0.0067 23.4 13.1 28 146-173 409-436 (438)
148 PF15102 TMEM154: TMEM154 prot 31.1 18 0.00039 26.8 0.2 17 148-164 66-82 (146)
149 PF10883 DUF2681: Protein of u 30.8 66 0.0014 21.7 2.9 18 148-165 7-24 (87)
150 PTZ00046 rifin; Provisional 29.3 1.3E+02 0.0028 25.8 5.0 20 152-171 326-345 (358)
151 COG2851 CitM H+/citrate sympor 28.7 69 0.0015 27.8 3.3 18 139-156 174-191 (433)
152 PF03729 DUF308: Short repeat 28.2 1.1E+02 0.0025 18.5 3.7 33 129-161 4-40 (72)
153 PRK05812 secD preprotein trans 27.9 3.9E+02 0.0085 23.9 8.1 41 117-157 357-397 (498)
154 COG0342 SecD Preprotein transl 27.2 3.9E+02 0.0084 24.0 7.9 39 118-157 369-407 (506)
155 PF07123 PsbW: Photosystem II 26.9 50 0.0011 24.2 1.9 30 16-45 100-129 (138)
156 TIGR01477 RIFIN variant surfac 26.7 1.5E+02 0.0032 25.4 4.9 20 152-171 321-340 (353)
157 KOG4831|consensus 26.2 76 0.0017 22.4 2.6 59 102-160 63-122 (125)
158 PF10855 DUF2648: Protein of u 25.6 82 0.0018 17.1 2.1 19 151-169 6-24 (33)
159 COG3088 CcmH Uncharacterized p 24.6 77 0.0017 23.7 2.6 19 151-169 114-132 (153)
160 PF02038 ATP1G1_PLM_MAT8: ATP1 24.4 71 0.0015 19.2 1.9 12 150-161 22-33 (50)
161 PF08693 SKG6: Transmembrane a 24.3 27 0.00059 20.0 0.1 17 149-165 21-37 (40)
162 PF04277 OAD_gamma: Oxaloaceta 24.3 1.5E+02 0.0032 18.9 3.7 13 148-160 9-21 (79)
163 PF01102 Glycophorin_A: Glycop 24.1 88 0.0019 22.4 2.8 11 142-152 60-70 (122)
164 PLN00082 photosystem II reacti 24.0 47 0.001 21.0 1.2 29 16-44 28-56 (67)
165 PF05568 ASFV_J13L: African sw 23.9 76 0.0017 23.6 2.4 10 162-171 50-59 (189)
166 PF02009 Rifin_STEVOR: Rifin/s 23.6 67 0.0015 26.7 2.4 12 163-174 279-290 (299)
167 PF10966 DUF2768: Protein of u 22.7 1.7E+02 0.0036 18.2 3.4 26 145-170 3-28 (58)
168 PF05297 Herpes_LMP1: Herpesvi 22.3 29 0.00063 28.8 0.0 20 42-61 126-145 (381)
169 PLN00077 photosystem II reacti 22.2 54 0.0012 23.4 1.3 30 16-45 89-118 (128)
170 PF12597 DUF3767: Protein of u 22.0 2.5E+02 0.0053 19.9 4.7 26 141-166 64-89 (118)
171 COG3763 Uncharacterized protei 21.9 2.1E+02 0.0045 18.5 3.8 29 20-48 3-32 (71)
172 KOG2533|consensus 21.7 5.8E+02 0.013 22.7 13.8 33 114-146 399-431 (495)
173 PF04191 PEMT: Phospholipid me 21.7 1.4E+02 0.003 19.9 3.4 23 145-167 1-23 (106)
174 PF11457 DUF3021: Protein of u 21.5 3E+02 0.0065 19.3 11.9 51 113-163 67-118 (136)
175 PF10321 7TM_GPCR_Srt: Serpent 21.4 4.8E+02 0.01 21.7 9.7 60 16-75 29-90 (313)
176 PF11431 Transport_MerF: Membr 21.3 1.1E+02 0.0024 18.0 2.3 19 150-168 26-44 (46)
177 PF01943 Polysacc_synt: Polysa 21.1 3.8E+02 0.0081 20.3 15.1 24 110-135 133-156 (273)
178 KOG3012|consensus 20.8 4.5E+02 0.0098 21.2 7.9 17 148-164 122-138 (259)
179 PF02673 BacA: Bacitracin resi 20.5 1.2E+02 0.0026 24.6 3.2 23 147-169 112-134 (259)
180 PF14316 DUF4381: Domain of un 20.4 1.1E+02 0.0024 22.2 2.8 22 144-165 22-43 (146)
181 COG1295 Rbn Ribonuclease BN fa 20.2 4.9E+02 0.011 21.4 15.7 25 145-169 266-290 (303)
182 PF07074 TRAP-gamma: Transloco 20.2 4E+02 0.0087 20.3 6.0 31 42-74 3-37 (170)
183 PF14163 SieB: Superinfection 20.2 90 0.002 22.8 2.3 16 145-160 32-47 (151)
No 1
>KOG1581|consensus
Probab=100.00 E-value=1.3e-33 Score=226.57 Aligned_cols=175 Identities=40% Similarity=0.690 Sum_probs=161.7
Q ss_pred CEEeeccCCCC-CCCCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhh
Q psy665 1 MLLFMLSSLDT-SDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQ 79 (180)
Q Consensus 1 ~~~f~~~~~~~-~~~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~ 79 (180)
|.+|++.++++ +++....+++.|+.++..++++||++++.||+++++++++++++|+|+|+++++.....++..|.+.+
T Consensus 150 vsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~ 229 (327)
T KOG1581|consen 150 VSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLP 229 (327)
T ss_pred eeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCch
Confidence 56899986544 34445579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHH
Q psy665 80 SLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVL 159 (180)
Q Consensus 80 ~~~~~~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~ 159 (180)
++.|...||+.++|+++++.|+++||.+++..++++||++.+++++.||++++++|.+.|||++++.||.|..+|++|++
T Consensus 230 av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~ 309 (327)
T KOG1581|consen 230 AVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIF 309 (327)
T ss_pred HHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhcc
Q psy665 160 LQAYCKLRKASLKKKL 175 (180)
Q Consensus 160 ~~~~~k~~~k~~~~~~ 175 (180)
+..+.|+|++.++||.
T Consensus 310 l~~~~k~~~~~~~~k~ 325 (327)
T KOG1581|consen 310 LEILLKKKKNQPRKKK 325 (327)
T ss_pred HHHHHHHhccCccccc
Confidence 9999987755444443
No 2
>KOG1580|consensus
Probab=99.97 E-value=6.8e-32 Score=210.45 Aligned_cols=166 Identities=31% Similarity=0.463 Sum_probs=154.8
Q ss_pred CEEeeccCCCCCCCCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhH
Q psy665 1 MLLFMLSSLDTSDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQS 80 (180)
Q Consensus 1 ~~~f~~~~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~ 80 (180)
|++||+++.+.. +.|++...+|-++++.|+-+|++++..|||+.+.|..+..+||+|+|++++.++...++++||+.+.
T Consensus 152 ValFmYK~~Kv~-g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF 230 (337)
T KOG1580|consen 152 VALFMYKENKVG-GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEF 230 (337)
T ss_pred HHHhhccccccC-CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHH
Confidence 579999854332 5677788999999999999999999999999999988999999999999999999999999999999
Q ss_pred hhHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q psy665 81 LHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLL 160 (180)
Q Consensus 81 ~~~~~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~ 160 (180)
+.|..+||..|+++.++++++.+||.+++..+..+||++++++++.||.++++.|+++|+||+++.||+|..+|+.++..
T Consensus 231 ~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 231 FYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy665 161 QAYCKLR 167 (180)
Q Consensus 161 ~~~~k~~ 167 (180)
.....++
T Consensus 311 D~~~GK~ 317 (337)
T KOG1580|consen 311 DVVDGKK 317 (337)
T ss_pred HhhcCCc
Confidence 8765443
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.97 E-value=7.5e-29 Score=204.33 Aligned_cols=169 Identities=38% Similarity=0.632 Sum_probs=152.8
Q ss_pred CEEeeccCCCCC--CCCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHH--hCc
Q psy665 1 MLLFMLSSLDTS--DKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQ--QGG 76 (180)
Q Consensus 1 ~~~f~~~~~~~~--~~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~--~g~ 76 (180)
+++|+++|.+++ ++.+...+..|+++++.|+++||+++++|||++++|+.+++|+++|+|+++++...+..+. .+|
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~ 210 (303)
T PF08449_consen 131 VAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGE 210 (303)
T ss_pred HheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 467888876443 2223234456999999999999999999999999999999999999999999999988887 889
Q ss_pred hhhHhhHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q psy665 77 FYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLM 156 (180)
Q Consensus 77 ~~~~~~~~~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~ 156 (180)
+.+...+..+||+.+.+++..+++++++|.+++.+++++||++.++++++||++++++|+++|||++++.||+|.++++.
T Consensus 211 ~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~ 290 (303)
T PF08449_consen 211 FRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFA 290 (303)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHH
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy665 157 AVLLQAYCKLRKA 169 (180)
Q Consensus 157 Gv~~~~~~k~~~k 169 (180)
|+.++.+.|+|+|
T Consensus 291 g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 291 GIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHhhccCC
Confidence 9999999876543
No 4
>KOG1582|consensus
Probab=99.94 E-value=5.6e-27 Score=186.07 Aligned_cols=160 Identities=23% Similarity=0.387 Sum_probs=153.7
Q ss_pred EEeeccCCCCCCCCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHh
Q psy665 2 LLFMLSSLDTSDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSL 81 (180)
Q Consensus 2 ~~f~~~~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~ 81 (180)
++|+|+|+. .+|+|++.|+.++..++++||+.+++|||.++.++.+..||.+|...+|.++.+.....+||+..++
T Consensus 174 i~FTLADs~----~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~ 249 (367)
T KOG1582|consen 174 IWFTLADSQ----TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAW 249 (367)
T ss_pred Hhhhhcccc----cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhh
Confidence 579999994 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcChh-hHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q psy665 82 HFMLQFPS-FTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLL 160 (180)
Q Consensus 82 ~~~~~~p~-~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~ 160 (180)
.+...||. ...+.++.++.+++|+.++...++.+||++++.++|.||.+++++|+++|.+|+|.++..|..+|+.|+++
T Consensus 250 ~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~L 329 (367)
T KOG1582|consen 250 TFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYL 329 (367)
T ss_pred HHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHh
Confidence 99999997 77889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy665 161 QAYCK 165 (180)
Q Consensus 161 ~~~~k 165 (180)
..+.|
T Consensus 330 n~ysk 334 (367)
T KOG1582|consen 330 NMYSK 334 (367)
T ss_pred hcccC
Confidence 99877
No 5
>KOG1583|consensus
Probab=99.84 E-value=1.8e-20 Score=149.33 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=121.9
Q ss_pred CccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHh------------h
Q psy665 18 TTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFM------------L 85 (180)
Q Consensus 18 ~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~------------~ 85 (180)
.-+.+|+.++..+++..|..+++||+.+++|+.++-|.+||+++.+.+..+. .-+|+.+.+.-. .
T Consensus 160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf---~~~div~~~~~~~~se~~~~p~~g~ 236 (330)
T KOG1583|consen 160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLF---MGDDIVSHWRLAFKSESYLIPLLGF 236 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHH---hcchHHHHHHHHhcCcceeccccCc
Confidence 3457999999999999999999999999999999999999999998887553 223333322211 1
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 86 QFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 86 ~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
.-|..|++++...+.++.+.--++..-.++++++++++.++||.+|.++|++.|+||+|++||+|.++|+.|-.+++-..
T Consensus 237 ~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 237 KVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 13677888877666666666667777789999999999999999999999999999999999999999999998887655
Q ss_pred Hhhh
Q psy665 166 LRKA 169 (180)
Q Consensus 166 ~~~k 169 (180)
.+.|
T Consensus 317 ~~~~ 320 (330)
T KOG1583|consen 317 NHPK 320 (330)
T ss_pred cCcc
Confidence 4443
No 6
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.80 E-value=2.1e-18 Score=128.08 Aligned_cols=141 Identities=25% Similarity=0.344 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhh-----CCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHh--hc-----Chhh
Q psy665 23 GVILLALYLSCDSFTSNWQGVLFES-----YKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFM--LQ-----FPSF 90 (180)
Q Consensus 23 G~~l~l~s~~~~a~~~~~~~~l~~~-----~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~--~~-----~p~~ 90 (180)
|.++.+.|.++.|++.+++|+++++ .+.++.++++|+++.+++.++|..+..++........ .. .++.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7889999999999999999999988 6899999999999999999998876554332111111 11 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 91 TLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 91 ~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
+..++..++++.+.+++.+.++++++|++.++.+.+|.+..+++|+++|||++|+.+++|+++.+.|+..|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 6677778899999999999999999999999999999999999999999999999999999999999998864
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.78 E-value=5.8e-18 Score=139.25 Aligned_cols=151 Identities=10% Similarity=0.069 Sum_probs=116.0
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHh-hHhh----cChhh
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSL-HFML----QFPSF 90 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~-~~~~----~~p~~ 90 (180)
+.+++..|+++.++|.++++++.++.+|..++++.++.++++|++.++.+.+.|.....++..... .+.. ..+..
T Consensus 139 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (302)
T TIGR00817 139 ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTK 218 (302)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchH
Confidence 345678899999999999999999999988755568999999999999999888776443211110 1101 11111
Q ss_pred HHH-HHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy665 91 TLD-CILLSI-SSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 91 ~~~-l~~~~~-~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~ 166 (180)
... .+..+. +....+.+.+.++++.||++.++.++++|++++++|+++|||++++.+++|+++++.|++++...|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 219 IYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 222 222233 4445556777899999999999999999999999999999999999999999999999999986543
No 8
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.76 E-value=7.5e-17 Score=135.88 Aligned_cols=146 Identities=13% Similarity=0.170 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHH-HHHhCc-hhhHhhHh-hcChhhHHHHHH
Q psy665 20 TLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVS-LLQQGG-FYQSLHFM-LQFPSFTLDCIL 96 (180)
Q Consensus 20 ~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~-~~~~g~-~~~~~~~~-~~~p~~~~~l~~ 96 (180)
.++|++++++|+++||++.++|+|..++|. +....+++...++.+...+. ...+++ .. .+. ..++. ...+++
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~-~~~i~y 261 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNNPS---VWIIHFDIT-LITIVT 261 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCCcc---cceeccchH-HHHHHH
Confidence 477999999999999999999999888773 23455666666665555433 333321 11 111 11222 223455
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy665 97 LSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 97 ~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~ 170 (180)
.++++.+++.++.+++++.||..++++.++.|++++++|++++||++++.+++|+++|+.|+++..+.|+++-+
T Consensus 262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK 335 (358)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 56667778888999999999999999999999999999999999999999999999999999999887666543
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.70 E-value=1.4e-15 Score=124.85 Aligned_cols=145 Identities=15% Similarity=0.084 Sum_probs=112.8
Q ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHH
Q psy665 19 TTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLS 98 (180)
Q Consensus 19 ~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~ 98 (180)
.+..|+++.+++.+++|.+.+..||..+++ ++... .+...++.+...+.....+.. ...++..|..+++.+
T Consensus 145 ~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~l~lg 215 (293)
T PRK10532 145 VDLTGAALALGAGACWAIYILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQAGE------ALWHWSILPLGLAVA 215 (293)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHccCc------ccCCHHHHHHHHHHH
Confidence 457899999999999999999999986654 55554 455667776666655543210 112344455556677
Q ss_pred HH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy665 99 IS-SAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASLK 172 (180)
Q Consensus 99 ~~-~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~~~ 172 (180)
++ +.+++.++++++++.+|..++++.+++|++++++|+++|||++++.|++|+++++.|+..+.+..+|+.|-|
T Consensus 216 v~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~ 290 (293)
T PRK10532 216 ILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIK 290 (293)
T ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 55 667777889999999999999999999999999999999999999999999999999999977654443333
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.70 E-value=1.2e-15 Score=128.32 Aligned_cols=149 Identities=16% Similarity=0.204 Sum_probs=115.4
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCC-----CChhhHHHHhHHHHHHHHHHHHH-HhCc-hhhHhhH----h
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLFESYK-----VTSLQMMFGTNLFSCLFTAVSLL-QQGG-FYQSLHF----M 84 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~-----~~~~~~~~y~~~~~~i~~~~~~~-~~g~-~~~~~~~----~ 84 (180)
|.++++.|+++.++|.+++++++++.||++++++ .++.++..|..+++.++++|... .++. ....... .
T Consensus 188 ~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~ 267 (350)
T PTZ00343 188 ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANM 267 (350)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc
Confidence 4567889999999999999999999999887653 56777888889999999998765 3431 1111100 0
Q ss_pred hcC--hhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 85 LQF--PSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 85 ~~~--p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
... +..+..++..+++.++-+.+.+.++++.+|++.++.++++|++++++|+++|||++|+.|++|++++++|+++|+
T Consensus 268 ~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 268 TNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 000 111222333445566666677789999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q psy665 163 YC 164 (180)
Q Consensus 163 ~~ 164 (180)
+.
T Consensus 348 ~~ 349 (350)
T PTZ00343 348 LF 349 (350)
T ss_pred hc
Confidence 65
No 11
>KOG1441|consensus
Probab=99.67 E-value=1.4e-16 Score=131.35 Aligned_cols=155 Identities=20% Similarity=0.273 Sum_probs=130.3
Q ss_pred CCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHh--hCCCChhhHHHHhHHHHHHHHH-HHHHH-hCchhhHhhHhhcChh
Q psy665 14 KVGKTTTLSGVILLALYLSCDSFTSNWQGVLFE--SYKVTSLQMMFGTNLFSCLFTA-VSLLQ-QGGFYQSLHFMLQFPS 89 (180)
Q Consensus 14 ~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~--~~~~~~~~~~~y~~~~~~i~~~-~~~~~-~g~~~~~~~~~~~~p~ 89 (180)
..|.++++.|.....++.+..+..+++++++++ +++.++.+++.|+..++.+.++ |.... +|+.. . .+ ...+.
T Consensus 155 ~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~-~~~~~ 231 (316)
T KOG1441|consen 155 VTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-V-GF-LTAPW 231 (316)
T ss_pred eccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-e-ee-ecccc
Confidence 347789999999999999999999999999995 5689999999999999999999 76543 34322 1 11 11111
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q psy665 90 --FTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLR 167 (180)
Q Consensus 90 --~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~ 167 (180)
....+++.++|.+..|...+.++++++|++.++.+.++.++.++.|+++|+||+|+.+..|+++.+.|+++|.+.|.|
T Consensus 232 ~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~ 311 (316)
T KOG1441|consen 232 FVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK 311 (316)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 123345556999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhhh
Q psy665 168 KASL 171 (180)
Q Consensus 168 ~k~~ 171 (180)
+|++
T Consensus 312 ~~~~ 315 (316)
T KOG1441|consen 312 EKKG 315 (316)
T ss_pred hhcc
Confidence 6654
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.66 E-value=6.1e-15 Score=121.16 Aligned_cols=137 Identities=12% Similarity=0.034 Sum_probs=106.6
Q ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHH
Q psy665 19 TTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLS 98 (180)
Q Consensus 19 ~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~ 98 (180)
++..|+++++++.+++|++.++.||..+++ ++...++ ..+.+...+....+++. ....+++.|..+++.+
T Consensus 153 ~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~~~~---~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~l~~~~ 222 (295)
T PRK11689 153 SNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGITLFF---ILTALALWIKYFLSPQP-----AMVFSLPAIIKLLLAA 222 (295)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhhccCCC--CchhHHH---HHHHHHHHHHHHHhcCc-----cccCCHHHHHHHHHHH
Confidence 456799999999999999999999976544 4444322 22223333322323321 1223456677777777
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 99 ISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 99 ~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
+++.+++.++++++++.||..++++.+++|+++++++++++||++++.+++|+++++.|+.+..+.+
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 8889999999999999999999999999999999999999999999999999999999998886654
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.65 E-value=1.7e-14 Score=118.70 Aligned_cols=148 Identities=7% Similarity=0.079 Sum_probs=109.8
Q ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHhhCC-CChhhHHHHhHHHHHHHHHHHH-HHhCchhhHhhHhhcChhhHHHHHH
Q psy665 19 TTLSGVILLALYLSCDSFTSNWQGVLFESYK-VTSLQMMFGTNLFSCLFTAVSL-LQQGGFYQSLHFMLQFPSFTLDCIL 96 (180)
Q Consensus 19 ~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~-~~~~~~~~y~~~~~~i~~~~~~-~~~g~~~~~~~~~~~~p~~~~~l~~ 96 (180)
.+..|+++.+.+.++++.+.++++|..++++ .......++...++.+...+.. ..+++......+...++..|..+++
T Consensus 140 ~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (299)
T PRK11453 140 VAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMY 219 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHH
Confidence 4568999999999999999999999765442 2223444555444443333222 2233211111122345567778888
Q ss_pred HHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy665 97 LSI-SSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 97 ~~~-~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~ 166 (180)
.++ ++.+++.++++++++.++..++++..++|++++++|++++||++++.+++|+++++.|+++..+.++
T Consensus 220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 875 4677888888999999999999999999999999999999999999999999999999998877654
No 14
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.60 E-value=8.2e-15 Score=115.67 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=102.2
Q ss_pred CccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHh-CchhhHhhHhhcChhhHHHHHH
Q psy665 18 TTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQ-GGFYQSLHFMLQFPSFTLDCIL 96 (180)
Q Consensus 18 ~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~p~~~~~l~~ 96 (180)
...+.|..+++.++++|++.++++|+.+|+++.+.+.....+.+++.+......... ++......+...+|...+ .
T Consensus 81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 157 (222)
T TIGR00803 81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW---I 157 (222)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH---H
Confidence 467899999999999999999999998876543333334444444443322222221 222111122223343332 2
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 97 LSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 97 ~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
..++++.++.++.+++|+.|+.+.+..+++||+++.++|+++|||++++.+|+|+.+++.|+++|
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 33567888999999999999999999999999999999999999999999999999999998654
No 15
>KOG1444|consensus
Probab=99.57 E-value=1.9e-14 Score=117.26 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHh---hcChhhH
Q psy665 15 VGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFM---LQFPSFT 91 (180)
Q Consensus 15 ~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~---~~~p~~~ 91 (180)
.+-+++..|+.++..++++.+.+.+..|+-.+.-+.+.+++++|.|+++++...+.....||+. +..+. ...+..|
T Consensus 150 ~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~ 228 (314)
T KOG1444|consen 150 TDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVL 228 (314)
T ss_pred ccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHH
Confidence 4567889999999999999999999999988776789999999999999999998888889876 43332 1234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy665 92 LDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASL 171 (180)
Q Consensus 92 ~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~~ 171 (180)
..+.+.++++..-.++.+++.+..+|++.++++...+..+.+..+++++++.++...+|..+-+.|...|++.+.|+|+.
T Consensus 229 ~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 229 VVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 67788889999999999999999999999999988899999999999999999999999999999999999999888877
Q ss_pred hhccCc
Q psy665 172 KKKLNQ 177 (180)
Q Consensus 172 ~~~~~~ 177 (180)
+++++|
T Consensus 309 ~~~l~~ 314 (314)
T KOG1444|consen 309 PPKLDQ 314 (314)
T ss_pred CCcccC
Confidence 766654
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.57 E-value=1.9e-13 Score=109.54 Aligned_cols=135 Identities=15% Similarity=0.042 Sum_probs=110.9
Q ss_pred CccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHH
Q psy665 18 TTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILL 97 (180)
Q Consensus 18 ~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~ 97 (180)
+.+..|+.+.+.+.++++.+.++.+|..++++.++.....+...++.+...+.....++. ...++..|..++..
T Consensus 124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~ 197 (260)
T TIGR00950 124 SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN------PQALSLQWGALLYL 197 (260)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC------CCcchHHHHHHHHH
Confidence 456789999999999999999999998876654455555567778888877776655432 11234556666666
Q ss_pred HHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q psy665 98 SIS-SAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAV 158 (180)
Q Consensus 98 ~~~-~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv 158 (180)
+++ +.+++.++++++++.|+..++++.+++|+++++++++++||++++.+++|+++++.|+
T Consensus 198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 655 6789999999999999999999999999999999999999999999999999999986
No 17
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.56 E-value=5.1e-14 Score=117.32 Aligned_cols=160 Identities=12% Similarity=0.119 Sum_probs=126.6
Q ss_pred eeccCCCC-CCCCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHH-HhCchhhHh
Q psy665 4 FMLSSLDT-SDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLL-QQGGFYQSL 81 (180)
Q Consensus 4 f~~~~~~~-~~~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~-~~g~~~~~~ 81 (180)
-.++|..+ +++.+.++.+.|+++++.+..+.|++++.+|++.+++ +..+......+++++++.+... ++.+-.+.
T Consensus 149 v~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~- 225 (334)
T PF06027_consen 149 VVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA--PRVEFLGMLGLFGFIISGIQLAILERSGIES- 225 (334)
T ss_pred eeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHheehhhhhc-
Confidence 34556433 2234557889999999999999999999999998865 7899999999999998886553 34321111
Q ss_pred hHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 82 HFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 82 ~~~~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
...+++.+...+.++++.++-+.++-..++..+|+..++-..+..+.+++.++++||+++++..++|.++|+.|+.+|
T Consensus 226 --~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy 303 (334)
T PF06027_consen 226 --IHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVY 303 (334)
T ss_pred --cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheE
Confidence 122345555666777777777777778899999999999998999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy665 162 AYCKLRK 168 (180)
Q Consensus 162 ~~~k~~~ 168 (180)
...+++.
T Consensus 304 ~~~~~~~ 310 (334)
T PF06027_consen 304 NLAESPE 310 (334)
T ss_pred EccCCcc
Confidence 8765443
No 18
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.56 E-value=3.5e-13 Score=110.52 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=112.2
Q ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHH
Q psy665 19 TTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLS 98 (180)
Q Consensus 19 ~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~ 98 (180)
.+..|+++.+++.+++|.+.++++|..++ ++.....|...++.+...+.....++.. ....+++.|..+.+.+
T Consensus 147 ~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~ 219 (292)
T PRK11272 147 GNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERL----TALPTLSGFLALGYLA 219 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCcc----cccCCHHHHHHHHHHH
Confidence 45689999999999999999999996432 2344566777777776666554443210 0123456677777777
Q ss_pred HH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy665 99 IS-SAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 99 ~~-~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~ 166 (180)
+. +.++..++++++++.++...+++..++|+++.++|++++||++++.+++|+++++.|+++..+.++
T Consensus 220 i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 220 VFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 678888999999999999999999999999999999999999999999999999999999876543
No 19
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.49 E-value=1.5e-12 Score=106.98 Aligned_cols=142 Identities=11% Similarity=0.021 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhh-HHHHHHHHHHHHH
Q psy665 25 ILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSF-TLDCILLSISSAA 103 (180)
Q Consensus 25 ~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~-~~~l~~~~~~~~~ 103 (180)
.+.+++.+++|.+.+.++|..++...+....+.|...++.+...+. ..... ....++|.. +..++..++++.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~g~~t~i 225 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI--ADSST----SHMGQNPMSLNLLLIAAGIVTTV 225 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH--ccCCc----ccccCCcHHHHHHHHHHHHHHHH
Confidence 3567788999999988888643211122333333333333322111 11110 001223332 2334445667889
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy665 104 GQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASLK 172 (180)
Q Consensus 104 g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~~~ 172 (180)
++.++++++++.||..++++.+++|++++++|++++||++++.+++|+++++.|+.+.........|||
T Consensus 226 ~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~~~ 294 (296)
T PRK15430 226 PLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRRK 294 (296)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999888876655444443
No 20
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.44 E-value=2e-12 Score=91.78 Aligned_cols=124 Identities=20% Similarity=0.279 Sum_probs=102.2
Q ss_pred HhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHH-HHHHHHHHHH
Q psy665 32 SCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSIS-SAAGQLFVFF 110 (180)
Q Consensus 32 ~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~-~~~g~~~~~~ 110 (180)
++||.+.++.++..++ .|+....++...++.+ .++.....++.. ....+++.+......+++ +.+++.+.++
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 4789999999998876 5999999999999988 665554433211 123444556666666655 6999999999
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 111 TIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 111 ~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
++++.++...+++..+.|+++.++++++++|++++.+++|+++++.|+.+..
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998753
No 21
>KOG1442|consensus
Probab=99.38 E-value=2.6e-13 Score=108.52 Aligned_cols=156 Identities=16% Similarity=0.078 Sum_probs=137.6
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhc-ChhhHHHH
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQ-FPSFTLDC 94 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~-~p~~~~~l 94 (180)
+...++.|+++...|.++-|+..++.+|.+...+...|.+++|+|..+.+..+|.++..||+.+.+.|.+. ....|..+
T Consensus 179 ~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~m 258 (347)
T KOG1442|consen 179 TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILM 258 (347)
T ss_pred cCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHH
Confidence 45688999999999999999999999987766667889999999999999999999999998766554221 33456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy665 95 ILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASL 171 (180)
Q Consensus 95 ~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~~ 171 (180)
.+.+++++.-++...+-||-++|+++.+-.+.|-+...++++.+++|..+..-|-|-.+|+.|...|.+.|+++++|
T Consensus 259 tLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 259 TLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred HHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 77789999999999999999999999999999999999999999999999999999999999999999998877654
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.35 E-value=1e-11 Score=88.98 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHH
Q psy665 24 VILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAA 103 (180)
Q Consensus 24 ~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 103 (180)
.++.+.|.+++++..++.|.=++ +.||..-++.-+.+..+++.......|+.... ..-+|..|..++..++.+.+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~---~~~~~k~~lflilSGla~gl 79 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAG---GEIGPKSWLFLILSGLAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceecc---cccCcceehhhhHHHHHHHH
Confidence 45678888999999988777554 56888888888888888888888888864211 12367889999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 104 GQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 104 g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
+-+++|++++...+..++++.-..+++++++|++++||++|.++|+|+.++..|..+.
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 9999999999999999999999999999999999999999999999999999997653
No 23
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.31 E-value=4.6e-10 Score=92.27 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=111.0
Q ss_pred CCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHH
Q psy665 17 KTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCIL 96 (180)
Q Consensus 17 ~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~ 96 (180)
.++...|+++++.+.++|+...++.+.. . +.++.++.++-.+++.+...+.....++..+... ...++..+...+.
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT-LIQTPQKIFMLAV 78 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHcCHHHHHHHHH
Confidence 3466789999999999999999888553 3 5799999999999998877766554443211111 0123333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 97 LSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 97 ~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
-+++....+.+.++++++.++..+++...+.|+++.++++++++|++++.+|+|+++.+.|+.+..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 334556678889999999999999999999999999999999999999999999999999998765
No 24
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.26 E-value=3.1e-11 Score=98.47 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHH-HHHHHH---hCchhhHhhHhhcChhhHHHH
Q psy665 19 TTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFT-AVSLLQ---QGGFYQSLHFMLQFPSFTLDC 94 (180)
Q Consensus 19 ~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~-~~~~~~---~g~~~~~~~~~~~~p~~~~~l 94 (180)
.+..|+.+.+++.++++++.+..||..++. ++.....+...++.+.. .+.... .++. . ....+..+..+
T Consensus 141 ~~~~g~~~~l~aal~~a~~~i~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~ 213 (281)
T TIGR03340 141 HRRKAYAWALAAALGTAIYSLSDKAAALGV--PAFYSALGYLGIGFLAMGWPFLLLYLKRHGR----S-MFPYARQILPS 213 (281)
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccch--hcccccHHHHHHHHHHHHHHHHHHHHHHhcc----c-hhhhHHHHHHH
Confidence 345788899999999999998877754322 22211111122233222 222211 1110 0 11112223343
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q psy665 95 ILL-SISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLL 160 (180)
Q Consensus 95 ~~~-~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~ 160 (180)
+.. ++++.+++.++++++++.|+..++++.++.|++++++|++++||++++.+++|+++++.|+.+
T Consensus 214 ~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 214 ATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 333 467888999999999999999999999999999999999999999999999999999999864
No 25
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.24 E-value=7e-10 Score=89.26 Aligned_cols=135 Identities=18% Similarity=0.226 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHH-hHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHH
Q psy665 20 TLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFG-TNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLS 98 (180)
Q Consensus 20 ~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y-~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~ 98 (180)
+..|+++.+.+.+++|++.+.++++. + .++.....+ ..........+...... . .......|..+...+
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~g 221 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS-R--LGPVTLALLLQLLLALLLLLLFFLSGF------G-APILSRAWLLLLYLG 221 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-C--CChHHHHHHHHHHHHHHHHHHHHhccc------c-ccCCHHHHHHHHHHH
Confidence 67999999999999999999999987 3 355555552 22211111111111110 0 122334566677777
Q ss_pred HHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Q psy665 99 ISSA-AGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 99 ~~~~-~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
+++. +++.++++++++.++...+++..++|+.++++++++++|++++.+++|+++++.|+.+....
T Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 222 VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 6655 79999999999999999999999999999999999999999999999999999999887665
No 26
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.23 E-value=1.2e-09 Score=87.72 Aligned_cols=138 Identities=9% Similarity=0.137 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhh-cCh-hhHHHHHHHHH
Q psy665 22 SGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFML-QFP-SFTLDCILLSI 99 (180)
Q Consensus 22 ~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~-~~p-~~~~~l~~~~~ 99 (180)
.|.++++++.++|+...++.|. .. +.++.++.++-.+++++.+.+.....++..+...... .+. +.+..+...++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 3899999999999999999886 33 4799999999999999887776654443211111111 111 22334555666
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 100 SSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 100 ~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
+....+.+.+.++++.++..+++...+.|+++.+++.++++|++++++|+|.++.++|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 777888999999999999999999999999999999999999999999999999999988654
No 27
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.20 E-value=8.2e-11 Score=91.99 Aligned_cols=152 Identities=11% Similarity=0.083 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHH
Q psy665 22 SGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISS 101 (180)
Q Consensus 22 ~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~ 101 (180)
-|++++..+|+..+.+-...+|..+--+....+.|||.|+++.+.++...+...|....--.-...++....++..++|+
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 58889999999998888777665543334558999999999999988766554443211000112245555677788999
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy665 102 AAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASLKK 173 (180)
Q Consensus 102 ~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~~~~ 173 (180)
+.-.++.-|+++-.++++.++++-+.|....+.|.++|++|.+.+.+..+.+=+.+..+|...|+++++++|
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~ 306 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK 306 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888899999999999999999999999999999999999999999999999999999999988766555443
No 28
>KOG2234|consensus
Probab=99.17 E-value=1.6e-09 Score=89.69 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=120.1
Q ss_pred CCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHh-CchhhHhhHhhcC-hhhHH
Q psy665 15 VGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQ-GGFYQSLHFMLQF-PSFTL 92 (180)
Q Consensus 15 ~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~-p~~~~ 92 (180)
....+...|...++.+|+..|+.+++.||++|+.+.+.|-....+..+|.++.+...+.+ ++-.....++..+ ...|.
T Consensus 176 ~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~ 255 (345)
T KOG2234|consen 176 SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWL 255 (345)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHH
Confidence 345688999999999999999999999999998888889888889999999988777654 2211011122221 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q psy665 93 DCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 93 ~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~ 168 (180)
. -+..++|.+++-..+|+.+...-.-.+.+..+++.+.|+.+|+.++|....+|+.+|+.++.+|...+.+.
T Consensus 256 v----Vl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 256 V----VLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred H----HHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 2 23567788888899999999999999999999999999999999999999999999999999998655543
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.11 E-value=3.1e-09 Score=86.64 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHH
Q psy665 24 VILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAA 103 (180)
Q Consensus 24 ~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 103 (180)
+++.+.+.++++...+..||..++. ++ ..+|.+..+.+...|....... ...+...+.+.|..++..++....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 75 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE--PD--FLWWALLAHSVLLTPYGLWYLA---QVGWSRLPATFWLLLAISAVANMV 75 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch--hH--HHHHHHHHHHHHHHHHHHHhcc---cCCCCCcchhhHHHHHHHHHHHHH
Confidence 4677889999999999988876542 33 4566666777777666553211 011222223334445555667788
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 104 GQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 104 g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
.+.+.++++++.++...+++.+..|+++.++++++++|++++++|+|.++++.|+.+...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999999999987654
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.06 E-value=5.4e-09 Score=83.97 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=106.4
Q ss_pred CCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHh-CchhhHhhHhh-cChhhHHHH
Q psy665 17 KTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQ-GGFYQSLHFML-QFPSFTLDC 94 (180)
Q Consensus 17 ~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~-g~~~~~~~~~~-~~p~~~~~l 94 (180)
......|++++++++++.|+.+++.||++|+.+.|.+.......++|.+..++..... ++-.....++. -++..|
T Consensus 109 ~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~--- 185 (244)
T PF04142_consen 109 NQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVW--- 185 (244)
T ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHH---
Confidence 3456899999999999999999999999999888999999999999999888776443 21101111111 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q psy665 95 ILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMV 154 (180)
Q Consensus 95 ~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv 154 (180)
...++.+++.+.+-..+|+.|...-...+.+..+++.++|+++|+.+++....+|+.+|
T Consensus 186 -~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 186 -IVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred -HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 22346777888899999999999999999999999999999999999999999998764
No 31
>KOG4510|consensus
Probab=99.00 E-value=4.7e-10 Score=89.85 Aligned_cols=155 Identities=10% Similarity=0.097 Sum_probs=122.5
Q ss_pred eeccCCCCCC-CCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhh
Q psy665 4 FMLSSLDTSD-KVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLH 82 (180)
Q Consensus 4 f~~~~~~~~~-~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~ 82 (180)
|.++|.++.+ ....+.+..|.+..+.+.+..|-.+++-+++-|+ .+..-.+.|...++++..++.....|++ .
T Consensus 172 FlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~--~h~~msvsyf~~i~lV~s~I~~~~ig~~----~ 245 (346)
T KOG4510|consen 172 FLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKN--AHAIMSVSYFSLITLVVSLIGCASIGAV----Q 245 (346)
T ss_pred cccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcc--ccEEEEehHHHHHHHHHHHHHHhhccce----e
Confidence 5566654421 1122456778888999999989889888888664 3666677788888999888877666643 2
Q ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 83 FMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 83 ~~~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
+++....|+..+.+++.++++|++...++++=-|...++.++...+++.+.-+++|+|-+|++.|.|+++|+++.....
T Consensus 246 -lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 246 -LPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred -cCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 3444566777888899999999999999888777778899999999999999999999999999999999999988776
Q ss_pred HHH
Q psy665 163 YCK 165 (180)
Q Consensus 163 ~~k 165 (180)
..|
T Consensus 325 ~~k 327 (346)
T KOG4510|consen 325 LKK 327 (346)
T ss_pred HHH
Confidence 543
No 32
>KOG2765|consensus
Probab=98.95 E-value=4.8e-09 Score=87.42 Aligned_cols=170 Identities=14% Similarity=0.102 Sum_probs=126.2
Q ss_pred EEeeccCCCCCCCCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhC--CCChhhHHHHhHHHHHHHHHHHHHHhCchhh
Q psy665 2 LLFMLSSLDTSDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESY--KVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQ 79 (180)
Q Consensus 2 ~~f~~~~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~--~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~ 79 (180)
++=+.+|++..++.+++..+.|.++.+.+.+..|.|.++-+|-..++ +.+...+.-|..++..+++-|.++.-... .
T Consensus 227 iiVt~~~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~ 305 (416)
T KOG2765|consen 227 IIVTMGDSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-G 305 (416)
T ss_pred EEEEeccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-c
Confidence 44556777666667778889999999999999999999998866655 45666666677777777776665432111 0
Q ss_pred HhhHhhcChhhHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q psy665 80 SLHFMLQFPSFTLDCILLS-ISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAV 158 (180)
Q Consensus 80 ~~~~~~~~p~~~~~l~~~~-~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv 158 (180)
...|-.++......+++.+ +.+++.-+++.++.-.++|+++++-.++....+++..+++=|+++++.+++|.+.|+.|.
T Consensus 306 ~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~F 385 (416)
T KOG2765|consen 306 EERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGF 385 (416)
T ss_pred cCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 1112122222222333333 557888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy665 159 LLQAYCKLRKASLK 172 (180)
Q Consensus 159 ~~~~~~k~~~k~~~ 172 (180)
....+.....++.+
T Consensus 386 v~vn~~~~~~~~~~ 399 (416)
T KOG2765|consen 386 VIVNISSENSKKDP 399 (416)
T ss_pred hheecccccccccc
Confidence 98877654444433
No 33
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.94 E-value=3.4e-08 Score=81.13 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHH----HHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHH
Q psy665 20 TLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNL----FSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCI 95 (180)
Q Consensus 20 ~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~----~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~ 95 (180)
...|+++.+.|.++.+.+....++. +.++.+..+.... .+++...+. . ..+ .+ .++.++..+
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~-----~~---~~~~~~~~~ 215 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH-I-LAK-----PL---KKYAILLNI 215 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH-h-ccc-----ch---HHHHHHHHH
Confidence 4779999999999999999888865 2477777444332 222222221 0 000 01 223333344
Q ss_pred HHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhH----HHHHHHHHHHHHHHHH
Q psy665 96 LLSISSAAGQLFVFFTIY-KFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGI----LGILMVLMAVLLQAYC 164 (180)
Q Consensus 96 ~~~~~~~~g~~~~~~~i~-~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~----iG~~lv~~Gv~~~~~~ 164 (180)
..+++..+++.+++.+.+ +.++.+.++.++.+|+++++.|+++|+|+.+++++ +|++++++|+.+....
T Consensus 216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 477778888889889999 99999999999999999999999999999999999 9999999999876543
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.92 E-value=3.6e-08 Score=78.47 Aligned_cols=142 Identities=17% Similarity=0.071 Sum_probs=113.8
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHH
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCI 95 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~ 95 (180)
..+-++.|..+.+.+-.||+.|-+..+|.-+ ..+...-+.+-..++.+..+|.-..+... ...+|......+
T Consensus 142 ~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag~------~l~~p~ll~laL 213 (292)
T COG5006 142 VWSLDPVGVALALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAGP------ALFSPSLLPLAL 213 (292)
T ss_pred cCcCCHHHHHHHHHHhHHHHHHHHHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcch------hhcChHHHHHHH
Confidence 3457899999999999999999999999864 33556677777778888888876644321 124566666666
Q ss_pred HHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 96 LLSISS-AAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 96 ~~~~~~-~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
..++++ .+=+.+=..++++.++-+.++...++|.+..+.+++++||.+|+.||.|++.|+.+..=.++.-
T Consensus 214 gvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 214 GVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred HHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence 677765 5556666789999999999999999999999999999999999999999999999886555543
No 35
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.89 E-value=1.3e-07 Score=67.02 Aligned_cols=103 Identities=27% Similarity=0.402 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q psy665 61 LFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSA-AGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIY 139 (180)
Q Consensus 61 ~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~-~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~f 139 (180)
.++.+...+.....++..+..+...+++ |......++++. .+..+++.++++.++ .+++...+.|+++.++|.++|
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~ 82 (113)
T PF13536_consen 6 LFSVLFLLIILLIRGRLRDLFRALRRKP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFF 82 (113)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHh
Confidence 4455666665566666544443333333 334555566654 778888899999996 777888899999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy665 140 AHPISLLGILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 140 g~~lt~~~~iG~~lv~~Gv~~~~~~k~ 166 (180)
+|++++.+|+|+++++.|+.+..+.+.
T Consensus 83 ~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 83 KERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999887653
No 36
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.86 E-value=1.9e-07 Score=78.93 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHH
Q psy665 24 VILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAA 103 (180)
Q Consensus 24 ~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 103 (180)
+..++..-++.+...++.+..++ .+.++....+|-..++.+.+++......+.. .....+...|..+...++++.+
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSR---SLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHHHH
Confidence 45566666777888888888775 4889999999999999888887765432100 0011122345566667777766
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH------hCCCCchhhHHHHHHHHHHHHHHHHH
Q psy665 104 GQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCII------YAHPISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 104 g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~------fg~~lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
.+.+.+.++++.+|..++++.++.|+++.++++++ ++|++++.+++|.++.+.|+.+....
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 66688899999999999999999999999999999 79999999999999999999887653
No 37
>KOG1443|consensus
Probab=98.85 E-value=9.2e-08 Score=78.01 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=115.0
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCC---CChhhHHHHhHHHHHHHHHHHH-HHhCch-h-hHhhHhhcCh-
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLFESYK---VTSLQMMFGTNLFSCLFTAVSL-LQQGGF-Y-QSLHFMLQFP- 88 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~---~~~~~~~~y~~~~~~i~~~~~~-~~~g~~-~-~~~~~~~~~p- 88 (180)
+.++++.|..++.+|.++.|+.-.+.+.++++.+ .+|..++++...+..+.++|.. .+||-. . ..-.|...++
T Consensus 158 sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~ 237 (349)
T KOG1443|consen 158 STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTG 237 (349)
T ss_pred ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCcc
Confidence 3469999999999999999999999999888753 5889999999999888888754 566521 1 1111222222
Q ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 89 SFTLDCILLSIS---SAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 89 ~~~~~l~~~~~~---~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
..+..+...+.+ +++--++-+..+.+++.++.++++-.+-+.+++++..+.++.++...|.|..+...|+.++
T Consensus 238 ~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 238 LILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 344444444433 4455566778899999999999999999999999999999999999999999999999998
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.85 E-value=1.6e-07 Score=68.43 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHH-HH
Q psy665 22 SGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLS-IS 100 (180)
Q Consensus 22 ~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~-~~ 100 (180)
.|+++++.+.++.+...++-|+=.++.+. .+.... . ... + ....+|.. .+..+ ++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~--~~~~~~-~-------~~~-~----------~~~~~p~~---~i~lgl~~ 57 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL--LSHAWD-F-------IAA-L----------LAFGLALR---AVLLGLAG 57 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC--ccchhH-H-------HHH-H----------HHHhccHH---HHHHHHHH
Confidence 48899999999999988888876655432 221110 0 000 0 01122211 22233 45
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH--HhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 101 SAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCI--IYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 101 ~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~--~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
..++..++..++++.+...+.++.+.-.+...+.++. +|||++|+.+++|++++++|+.+...
T Consensus 58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 6777888889999999999999999998888888885 89999999999999999999998754
No 39
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.74 E-value=4e-07 Score=72.83 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=91.9
Q ss_pred hhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHH-HHHHHHHHHHHHHH
Q psy665 34 DSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLS-ISSAAGQLFVFFTI 112 (180)
Q Consensus 34 ~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~-~~~~~g~~~~~~~i 112 (180)
||...+..|..+++ ..|+.+..++-.+++.+...+..... .+.+.+......+ ++..+.+.+.+.++
T Consensus 1 Wg~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~a~ 68 (260)
T TIGR00950 1 WGTTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR-----------PPLKRLLRLLLLGALQIGVFYVLYFVAV 68 (260)
T ss_pred CcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc-----------cCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556565665543 56889999999888888777654321 1223344444555 44577788899999
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 113 YKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 113 ~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
++.++...+++..+.|+++.+++.++++|++++.+++|+.+.+.|+.+...
T Consensus 69 ~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 69 KRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999999888653
No 40
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.74 E-value=2.1e-06 Score=69.78 Aligned_cols=133 Identities=18% Similarity=0.166 Sum_probs=104.2
Q ss_pred hhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhh-cChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy665 34 DSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFML-QFPSFTLDCILLSISSAAGQLFVFFTI 112 (180)
Q Consensus 34 ~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~-~~p~~~~~l~~~~~~~~~g~~~~~~~i 112 (180)
.++|+...|++ +.++.+-.+-=.++-.+..+..+++..+-.+ +.. .++..|..++..|..+++--.+...+-
T Consensus 160 f~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa 232 (293)
T COG2962 160 FGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGLVTAVPLLLFAAAA 232 (293)
T ss_pred HHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhHHHHHHHHHHHHHH
Confidence 47777554444 5677766665555555655555554432111 223 556678888888999999999999999
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy665 113 YKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASLKK 173 (180)
Q Consensus 113 ~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~~~~ 173 (180)
++.+=.+....++.+|..-.++++++|||++++-+++.-+.+-.|+.++.+..-+++||++
T Consensus 233 ~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~~ 293 (293)
T COG2962 233 KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKKR 293 (293)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999998877666553
No 41
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.74 E-value=7.6e-07 Score=72.29 Aligned_cols=145 Identities=13% Similarity=0.153 Sum_probs=116.1
Q ss_pred CccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHH
Q psy665 18 TTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILL 97 (180)
Q Consensus 18 ~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~ 97 (180)
+.+--|+++.+.+-++||+...+.+-+. +.++.|+..+--+++.+++.......++..+..+ ..++|+.+......
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~ 78 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALT 78 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHH
Confidence 3456799999999999999997766653 5699999999999999999987776665544433 45667766555444
Q ss_pred HHHHHHHHHHHH-HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q psy665 98 SISSAAGQLFVF-FTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLR 167 (180)
Q Consensus 98 ~~~~~~g~~~~~-~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~ 167 (180)
+.. ...|...| +++.+--.+-++.-=.+.|.+.+++|.++|+|++++.||+..++...||....|....
T Consensus 79 a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~ 148 (293)
T COG2962 79 ALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS 148 (293)
T ss_pred HHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 433 23454444 8999999999999999999999999999999999999999999999999999886533
No 42
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.72 E-value=1.3e-06 Score=71.65 Aligned_cols=130 Identities=17% Similarity=0.064 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHH-H
Q psy665 24 VILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISS-A 102 (180)
Q Consensus 24 ~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~-~ 102 (180)
+++++.-.++||...+..|.... +.+|.+.+++-..++.+..++.....++- ....+.|......+++. .
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~ 80 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHP-------LPTLRQWLNAALIGLLLLA 80 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCcHHHHHHHHHHHHHHHH
Confidence 45677788999999988876654 57999999999999988887766544320 11223455555566554 4
Q ss_pred HHHHHHHHHH-HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 103 AGQLFVFFTI-YKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 103 ~g~~~~~~~i-~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
..+.+.+.+. ++.++..+++...+.|+++.+++.+ ++|++++.+|+|..+.+.|+.+..+
T Consensus 81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 5566777777 8889899999999999999999985 7999999999999999999987654
No 43
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.71 E-value=1.4e-06 Score=73.51 Aligned_cols=139 Identities=9% Similarity=0.082 Sum_probs=105.4
Q ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCC-hhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHH
Q psy665 19 TTLSGVILLALYLSCDSFTSNWQGVLFESYKVT-SLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILL 97 (180)
Q Consensus 19 ~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~-~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~ 97 (180)
.++.-.++++.--.+...+.++.|.++++. + |+.+..+--+++.+...+... .+ ..+..++ ...+..|..++..
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~--~~P~~l~~~~~~~~~l~~~~~~~-~~-~~~~~~~-~~~~~~~~~llp~ 120 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNML--PLPWTISSLQLFVGWLFALLYWA-TG-FRKIPRI-KSLKLFLKNFLPQ 120 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHH-hC-CCCCCCC-CCHHHHHHHHHHH
Confidence 355555566666666677788888888865 6 888888888888776544332 11 1000000 1112356678888
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
++|+..++.....+++..++....++..+.|+++++++.++++|++++.+++|.+++++|+.+..
T Consensus 121 gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 121 GLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 99988888888899999999999999999999999999999999999999999999999998765
No 44
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.62 E-value=9.6e-07 Score=72.85 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=99.1
Q ss_pred hHHHHHHHHhhCCCC--hhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy665 37 TSNWQGVLFESYKVT--SLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYK 114 (180)
Q Consensus 37 ~~~~~~~l~~~~~~~--~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~ 114 (180)
+...||++.++.... +.-+++......++...+.....+. .......+......+++..++..+...++++
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-------PKSRKIPLKKYAILSFLFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-------cCCCcChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557899988865333 6777777766666666655543330 1112223556667788889999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy665 115 FGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 115 ~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~ 170 (180)
.+-.+..++...+++.++++|+++++++.++.++.+.+++.+|+.+....+.++++
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 99999999999999999999999999999999999999999999998887654443
No 45
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.61 E-value=6.3e-07 Score=73.66 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHH
Q psy665 23 GVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSA 102 (180)
Q Consensus 23 G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~ 102 (180)
|+++.+.++++||..++..|++. +.++.+.+. ..++............+. . .+.+..+..-+..++.=.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~~~~~~~----~--~~~~~~~~~g~l~G~~w~ 70 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAIAIFVLP----E--FWALSIFLVGLLSGAFWA 70 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHHHHHhCC----c--ccccHHHHHHHHHHHHHH
Confidence 67899999999999999998864 445555542 233333333222211110 0 122444555555566678
Q ss_pred HHHHHHHHHHHHhchHHHHHHHH-HHHHHHHHHHHHHhCCCCchhh----HHHHHHHHHHHHHHHHHH
Q psy665 103 AGQLFVFFTIYKFGAIVFTIIMT-VRQGLAILLSCIIYAHPISLLG----ILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 103 ~g~~~~~~~i~~~gal~~ai~~~-lr~v~sillsv~~fg~~lt~~~----~iG~~lv~~Gv~~~~~~k 165 (180)
.+|++++.++++.|..+.-++.+ +.++++.+.|+++|+|+.++++ ++|.++++.|+.+....+
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 89999999999999999988888 8889999999999999999999 999999999988875543
No 46
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.60 E-value=3.8e-06 Score=69.04 Aligned_cols=124 Identities=11% Similarity=0.091 Sum_probs=92.6
Q ss_pred HhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHHHHHHHHHH
Q psy665 32 SCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFT 111 (180)
Q Consensus 32 ~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~g~~~~~~~ 111 (180)
++......++|.+++++ ..|..+.+.-..++.+...+. ...+.. .....+.+.|..++..+++..+.+.+...+
T Consensus 12 ~~~~~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 85 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLS-WSSGLP----KRLKISSALLKLLLPVAIVHTIGHVTSNVS 85 (302)
T ss_pred HHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHH-HHhCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556788888754 367777776666665554433 111110 001123456777888888888888889999
Q ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 112 IYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 112 i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
+++.++...+++..+.|+++.+++.++++|++++.+++|.+++++|+.+.
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999764
No 47
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.58 E-value=2.9e-06 Score=69.70 Aligned_cols=130 Identities=14% Similarity=0.040 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHH
Q psy665 22 SGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISS 101 (180)
Q Consensus 22 ~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~ 101 (180)
.++++++.++++|+......|..... .+|....++-..++.+...+.. .. . . ..+ +.+...+..++..
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~--~~P~~~~~~R~~~a~l~l~~~~---~~-~---~-~~~--~~~~~~~~~~l~~ 71 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSES--LGPVGGAAMIYSVSGLLLLLTV---GF-P---R-LRQ--FPKRYLLAGGLLF 71 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHHHHc---cc-c---c-ccc--ccHHHHHHHhHHH
Confidence 35778999999999999888876654 5999999988888877766532 11 0 0 111 1122222222333
Q ss_pred HHHHHHHHHHHH----HhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 102 AAGQLFVFFTIY----KFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 102 ~~g~~~~~~~i~----~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
...+.+.+.+++ ..++..++++.++.|+++.++++++++|++++.+|+|+++.+.|+.+...
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 344445555554 35677788999999999999999999999999999999999999877653
No 48
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.56 E-value=5.3e-06 Score=68.25 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=92.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHHH
Q psy665 25 ILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAG 104 (180)
Q Consensus 25 ~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~g 104 (180)
++.+++.++|+......|...+ +.+|....++-..++.+..++.... .+ ..+..++..+++...+
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~~~-----------~~--~~~~~~~~~g~~~~~~ 71 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFVAR-----------PK--VPLNLLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHhcC-----------CC--CchHHHHHHHHHHHHH
Confidence 5678889999999999987665 4699999999888776554432210 11 1123344445554444
Q ss_pred HH-HHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 105 QL-FVFFTIYK-FGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 105 ~~-~~~~~i~~-~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
+. +.+.++++ .++...+++.++.|+++.++++++++|+++.++++|.++.+.|+.+...
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 44 45567776 4678888889999999999999999999999999999999999887653
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.42 E-value=4.2e-06 Score=59.33 Aligned_cols=63 Identities=6% Similarity=0.142 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 99 ISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 99 ~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
++..++.+++..++++.+...+.+...+.++.+.++|+++|||++++.+++|+++++.|+...
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 345567778889999999999999999999999999999999999999999999999998764
No 50
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.35 E-value=6.4e-05 Score=60.26 Aligned_cols=141 Identities=23% Similarity=0.203 Sum_probs=100.3
Q ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHH
Q psy665 19 TTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLS 98 (180)
Q Consensus 19 ~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~ 98 (180)
....+....+...+.|+......+..... ..+.....++...++.+...+....... .....+...+...+.-.
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 77 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPR-----GLRPALRPWLLLLLLAL 77 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcc-----cccccccchHHHHHHHH
Confidence 45677788888888899888887776543 3466666665666566552222211110 00111111233444445
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 99 ISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSC-IIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 99 ~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv-~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
++....+.+.+.++++.++...++.....|+++.+++. ++++|++++.+|+|..+.+.|+.+..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~ 145 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGG 145 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCC
Confidence 66778888889999999999999999999999999996 67799999999999999999999887644
No 51
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.25 E-value=2.2e-05 Score=65.87 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy665 89 SFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 89 ~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~ 166 (180)
..|+.-+.++++-..++++...+.+.++.+...+......++++++|+++++++.++.|++|+++.++|+.+..+...
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 345555557899999999999999999999999999999999999999999999999999999999999988777653
No 52
>KOG3912|consensus
Probab=98.24 E-value=3.4e-05 Score=62.68 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=107.1
Q ss_pred CCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHH-H----hCch------------
Q psy665 15 VGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLL-Q----QGGF------------ 77 (180)
Q Consensus 15 ~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~-~----~g~~------------ 77 (180)
.+-+.-+.|+++++.+-+.-|+..+.+||.+++++.+|.+..-|-.++|.+......+ + .|+-
T Consensus 169 ~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~ 248 (372)
T KOG3912|consen 169 TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDW 248 (372)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhH
Confidence 3446779999999999999999999999999999999999999999999765443322 1 1211
Q ss_pred hhHhhHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q psy665 78 YQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMA 157 (180)
Q Consensus 78 ~~~~~~~~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~G 157 (180)
.+++.-....|.....+...-+.-+.-|+.=....|+.++++=.+.-.+|..+-=+++.....|.+...|+.|-++.+.|
T Consensus 249 ~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G 328 (372)
T KOG3912|consen 249 GDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG 328 (372)
T ss_pred HHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222211111111111122233444567888999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy665 158 VLLQA 162 (180)
Q Consensus 158 v~~~~ 162 (180)
..+|.
T Consensus 329 i~lY~ 333 (372)
T KOG3912|consen 329 IILYN 333 (372)
T ss_pred HHHHH
Confidence 99886
No 53
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.19 E-value=5.2e-05 Score=60.82 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=69.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcCh-hhHHHHHHHHHHHHHH
Q psy665 26 LLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFP-SFTLDCILLSISSAAG 104 (180)
Q Consensus 26 l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p-~~~~~l~~~~~~~~~g 104 (180)
+.+++.+++|.+.+..||..+ . +..+... .++...+...+.....+.. .....++ ..|..++..++++.++
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~g~~t~i~ 221 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKN-T--DLAGFCL-ETLSLMPVAIYYLLQTDFA----TVQQTNPFPIWLLLVLAGLITGTP 221 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-C--CcchHHH-HHHHHHHHHHHHHHHhccC----cccccCchhHHHHHHHHHHHHHHH
Confidence 567789999999999888643 2 2222222 1222222222222221111 0001122 3577777788889999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy665 105 QLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCII 138 (180)
Q Consensus 105 ~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~ 138 (180)
+.++.+++++.++..++++.+++|++++++++++
T Consensus 222 ~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 222 LLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999874
No 54
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.16 E-value=0.0004 Score=56.98 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHH
Q psy665 21 LSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSIS 100 (180)
Q Consensus 21 ~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~ 100 (180)
..|+.+++.++++++...++.|....+ .++.+..++-.+++.+.+.+...... ...+++.|......+++
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~--~~~~~~~~~R~~~a~l~l~~~~~~~~--------~~~~~~~~~~~~~~g~~ 80 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPL--VGAPGVTALRLALGTLILIAIFKPWR--------LRFAKEQRLPLLFYGVS 80 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHhHHh--------ccCCHHHHHHHHHHHHH
Confidence 789999999999999999988877764 59999999999999887765432111 11223455566667777
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q psy665 101 SAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLS 135 (180)
Q Consensus 101 ~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sills 135 (180)
....+.+.++++++.++...++.....|+++.+++
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 77778888899999999999999999999999887
No 55
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.11 E-value=0.00023 Score=59.87 Aligned_cols=138 Identities=15% Similarity=0.033 Sum_probs=99.8
Q ss_pred ccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHH--HH---HHHhCchhhHhhHhhcChhhHHH
Q psy665 19 TTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTA--VS---LLQQGGFYQSLHFMLQFPSFTLD 93 (180)
Q Consensus 19 ~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~--~~---~~~~g~~~~~~~~~~~~p~~~~~ 93 (180)
....|+++++++.+|++-+++-+|| .+ .-+||.. |. ..+....+ |. .+..+++.+.. .+.++..+..
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k---~w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~--~~~~~~~~~~ 75 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VK---KWSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYY--SSFSGSTLLP 75 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cC---CCchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHH--HhcCHHHHHH
Confidence 5688999999999999999999988 33 3456766 54 33332211 21 12223322211 2355677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH-HHHHHHHHHHHHHhCCC-------CchhhHHHHHHHHHHHHHHHHH
Q psy665 94 CILLSISSAAGQLFVFFTIYKFGAIVFTIIMT-VRQGLAILLSCIIYAHP-------ISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 94 l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~-lr~v~sillsv~~fg~~-------lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
.++.+++=.+||...+.++++.|-...-++++ ++-+...+++.++|||= -.....+|.++++.|+.+..+.
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888999999999999999888777765 68899999999999842 2245778999999999998884
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.06 E-value=4.1e-05 Score=54.98 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAIVF-TIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal~~-ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
.++..++.++...++++.+-.++ ++.+-+.-+.+.++|+++|||++|+.+++|++++++|+......
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 34555666777788888876655 44456889999999999999999999999999999999776443
No 57
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.00 E-value=2.6e-05 Score=62.67 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=70.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy665 87 FPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 87 ~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~ 166 (180)
++.....+..=+++..+.+.+.+.++++.+|.+..+....|.++|.+++++++++++++.||++..+.+.|+.+......
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 33444444555678888999999999999999999999999999999999999999999999999999999998876654
Q ss_pred hh
Q psy665 167 RK 168 (180)
Q Consensus 167 ~~ 168 (180)
..
T Consensus 93 ~~ 94 (244)
T PF04142_consen 93 QS 94 (244)
T ss_pred cc
Confidence 43
No 58
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.97 E-value=0.00083 Score=49.39 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHH
Q psy665 24 VILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAA 103 (180)
Q Consensus 24 ~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 103 (180)
.++.+.+-.+-++...++.|+-++.+ +++.-.+.+...+++.+....+..++. +. ....+.| |+..+ =++++..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~-~~~~~~p--~w~~l-GG~lG~~ 76 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SL-ASLSSVP--WWAYL-GGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-cc-chhccCC--hHHhc-cHHHHHH
Confidence 34555555555666666666655433 689999999999999988877766543 11 1122222 22222 4678888
Q ss_pred HHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHHH-HhC---CCCchhhHHHHHHHHHHHH
Q psy665 104 GQLFVFFTIYKFGAIVFTIIMTV-RQGLAILLSCI-IYA---HPISLLGILGILMVLMAVL 159 (180)
Q Consensus 104 g~~~~~~~i~~~gal~~ai~~~l-r~v~sillsv~-~fg---~~lt~~~~iG~~lv~~Gv~ 159 (180)
...+....+++.|+..+...... +-+.++++.-+ +|+ +++++...+|.++++.|+.
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 88888899999999998888877 66677778876 444 8899999999999999985
No 59
>KOG2766|consensus
Probab=97.95 E-value=5e-06 Score=66.65 Aligned_cols=149 Identities=12% Similarity=0.161 Sum_probs=113.4
Q ss_pred cCCCCCCCCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhc
Q psy665 7 SSLDTSDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQ 86 (180)
Q Consensus 7 ~~~~~~~~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~ 86 (180)
+|....+..+.++...|++++++..-+.|+-++.+|-+-| +.+..|+|-...++|+++..+=.+.+..-.... +.
T Consensus 151 sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl---~w 225 (336)
T KOG2766|consen 151 SDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQFIFERHHVSTL---HW 225 (336)
T ss_pred eeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhhccceeeE---ee
Confidence 5654444555678899999999999999999999999887 458999999999999999887655443211111 11
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 87 FPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 87 ~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
+.+...++ .+++|-++-..+.-..+|..|++..++-......-++++ ..||-+++|...+.-+.+..|..+|+-
T Consensus 226 ~~~i~~yl-~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 226 DSAIFLYL-RFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred hHHHHHHH-HHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 11222222 255666666666667889999999888888899999988 788888999999999999999999853
No 60
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.86 E-value=0.0011 Score=46.77 Aligned_cols=64 Identities=9% Similarity=0.173 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAIV-FTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal~-~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
.++..++.++...++|+.+..+ .++.+-+..+.+.+.|+++|||++|+.+++|+++++.|+..-
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3445566677778888887654 567777899999999999999999999999999999998763
No 61
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.81 E-value=0.00027 Score=58.57 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=88.1
Q ss_pred CccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHH
Q psy665 18 TTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILL 97 (180)
Q Consensus 18 ~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~ 97 (180)
..+.+|+++.+.+.++.+...++|||-..+.+..+.+--. + ... ..++|..|..++.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~------------------~---~~~-~l~~~~W~~G~~~- 59 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS------------------G---GRS-YLRRPLWWIGLLL- 59 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc------------------h---hhH-HHhhHHHHHHHHH-
Confidence 4678999999999999999999999965543211111000 0 001 1233444444432
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
..+|+...+.++...++...++.+.+.-+.+.+++-++++|+++...+.|+++++.|.....
T Consensus 60 ---~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 60 ---MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred ---HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 23455666778899999999999999999999999999999999999999999999987654
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.77 E-value=0.00022 Score=57.96 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=83.2
Q ss_pred CCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-H
Q psy665 49 KVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTV-R 127 (180)
Q Consensus 49 ~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~l-r 127 (180)
+-+|.+.++=+.+=+.++.+...++... . ...++..+...+..+++=.+||...+.++++.|-..+.++++- +
T Consensus 9 gG~~~~Q~lG~t~Gali~alv~~~~~~p-----~-~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~Q 82 (269)
T PF06800_consen 9 GGKPANQILGTTIGALIFALVVFLFRQP-----A-FSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQ 82 (269)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhCC-----C-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHH
Confidence 3456666665555444444444332221 1 1223455666677778889999999999999999999999875 6
Q ss_pred HHHHHHHHHHHhCCCCchhhHH----HHHHHHHHHHHHHHHHHhhhh
Q psy665 128 QGLAILLSCIIYAHPISLLGIL----GILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 128 ~v~sillsv~~fg~~lt~~~~i----G~~lv~~Gv~~~~~~k~~~k~ 170 (180)
-+.+.+.++++|||--+..+++ +.++++.|+.+.++.++++++
T Consensus 83 Lvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 83 LVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 6779999999999987776665 888899999998887655543
No 63
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.74 E-value=0.0018 Score=52.69 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=91.8
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHH-HHHhCchhhHhhHhhcChhhHHHH
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVS-LLQQGGFYQSLHFMLQFPSFTLDC 94 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~-~~~~g~~~~~~~~~~~~p~~~~~l 94 (180)
++++...|+..++++.+....|.++.+- .+.+++...+=. .++....... .....+ ...+...|..
T Consensus 132 ~~~~~~kgi~~Ll~stigy~~Y~~~~~~----~~~~~~~~~lPq-aiGm~i~a~i~~~~~~~-------~~~~k~~~~n- 198 (269)
T PF06800_consen 132 SKSNMKKGILALLISTIGYWIYSVIPKA----FHVSGWSAFLPQ-AIGMLIGAFIFNLFSKK-------PFFEKKSWKN- 198 (269)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHhHHHH-HHHHHHHHHHHhhcccc-------cccccchHHh-
Confidence 3456678999999998888888877444 256777766633 2333332222 221211 1122234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhh----HHHHHHHHHHHH
Q psy665 95 ILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLG----ILGILMVLMAVL 159 (180)
Q Consensus 95 ~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~----~iG~~lv~~Gv~ 159 (180)
+.-+++=.+|+.+++...++.|..+.=+++-+..+++.+.|+++|+|+=+.++ ++|.++++.|..
T Consensus 199 il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 199 ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 34567778999999999999999999999999999999999999999988764 467777777654
No 64
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.72 E-value=0.00037 Score=49.32 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 99 ISSAAGQLFVFFTIYKFGAIVF-TIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 99 ~~~~~g~~~~~~~i~~~gal~~-ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
++..++.++...++++.+-.++ ++.+-+..+.+.+.|+++|+|++|+.+++|+++++.|+.....
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3444555666788888876554 4446688899999999999999999999999999999988644
No 65
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.57 E-value=0.0014 Score=45.95 Aligned_cols=64 Identities=5% Similarity=0.107 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAI-VFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal-~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
.++..++.++...++|+.+-. ..++.+-+..+.+.+.|+++|||++|+.+++|+++++.|+..-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 344556666777888887754 4577777899999999999999999999999999999998764
No 66
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.006 Score=45.40 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHh-CchhhHhhHhhcChhhHHHHHHHH
Q psy665 20 TLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQ-GGFYQSLHFMLQFPSFTLDCILLS 98 (180)
Q Consensus 20 ~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~p~~~~~l~~~~ 98 (180)
..+.+++.+++-.+-.+...++.|+.+.-+ +|.--.+.....|++.+....+.. +.. .......+|. +... =+
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~--~~a~~~~~pw--W~~~-GG 76 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHP--GLAAVASAPW--WAWI-GG 76 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhccCCch--HHHH-cc
Confidence 345666777776666777777777665433 678888888888888877665542 322 1222233333 3221 12
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHhC----CCCchhhHHHHHHHHHHHHHH
Q psy665 99 ISSAAGQLFVFFTIYKFGAIVFTIIMTV-RQGLAILLSCIIYA----HPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 99 ~~~~~g~~~~~~~i~~~gal~~ai~~~l-r~v~sillsv~~fg----~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
+++.+-.........+.|+.++...... +-+.++++.-+=+. +++++.-++|++++++|+.+.
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 3444444444566788888877776666 66677778777443 789999999999999996554
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.42 E-value=0.00092 Score=45.76 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q psy665 100 SSAAGQLFVFFTIYKFGAIVF-TIIMTVRQGLAILLSCIIYAHPISLLGILGILMV 154 (180)
Q Consensus 100 ~~~~g~~~~~~~i~~~gal~~-ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv 154 (180)
+..++.++...++|+.+..++ ++..-+..+.+.+.|+++|||++|+.+++|+.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 455566777799999887777 5566689999999999999999999999999875
No 68
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0027 Score=44.51 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 99 ISSAAGQLFVFFTIYKFGAI-VFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 99 ~~~~~g~~~~~~~i~~~gal-~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
++-.+...+...++|+.+-. ..++.+-.-.+.+.+.|+++|+|++++.+++|.+++++|+..-.+
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 34445566677888888754 457888889999999999999999999999999999999976533
No 69
>KOG2234|consensus
Probab=97.24 E-value=0.019 Score=48.16 Aligned_cols=146 Identities=11% Similarity=0.107 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhC--CCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhH-hhcChhhH---HHHH
Q psy665 22 SGVILLALYLSCDSFTSNWQGVLFESY--KVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHF-MLQFPSFT---LDCI 95 (180)
Q Consensus 22 ~G~~l~l~s~~~~a~~~~~~~~l~~~~--~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~-~~~~p~~~---~~l~ 95 (180)
.=.+.++...+..+.....-+...++. +-.+....+-+=.+-.+++...++.+.+-. ...+ ...+++.| .+.+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKY-AKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHH-hhhhhhhcCHHHHhChHHHH
Confidence 444444444455555544443333322 345566666666666777666665552110 0011 11222221 1333
Q ss_pred HH---HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q psy665 96 LL---SISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 96 ~~---~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~ 168 (180)
.. +++.++=|...+.+..+.+|.+..+...++...|.+++++++++++++.||....+.+.|+.+..+....+
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 33 34555666788899999999999999999999999999999999999999999999999999988544333
No 70
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.94 E-value=0.0062 Score=43.24 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHHHHHHHHH
Q psy665 31 LSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFF 110 (180)
Q Consensus 31 ~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~g~~~~~~ 110 (180)
.++||.++.+-||--+..+...... +.+.- ..+...+|+.+...+ ..-.|...++.
T Consensus 5 g~~WG~Tnpfik~g~~~~~~~~~~~----~~~~~----------------~~~Ll~n~~y~ipf~----lNq~GSv~f~~ 60 (113)
T PF10639_consen 5 GILWGCTNPFIKRGSSGLEKVKASL----QLLQE----------------IKFLLLNPKYIIPFL----LNQSGSVLFFL 60 (113)
T ss_pred hHHhcCchHHHHHHHhhcCCccchH----HHHHH----------------HHHHHHhHHHHHHHH----HHHHHHHHHHH
Confidence 4688999999988665442221110 11000 011233344333222 34566777888
Q ss_pred HHHHhchHHHHHHH-HHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q psy665 111 TIYKFGAIVFTIIM-TVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLL 160 (180)
Q Consensus 111 ~i~~~gal~~ai~~-~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~ 160 (180)
.+++.+-..+.++. .+.-++|.+.++++.+|..++..++|+++++.|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 99999999888885 789999999999998999999999999999999753
No 71
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.00042 Score=55.43 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHH
Q psy665 23 GVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSA 102 (180)
Q Consensus 23 G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~ 102 (180)
++++.+.-.+.|+....+..|. +-.|.+.+.-+++=+.++.++..++.. ...++..+..-+..+..=.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~----GG~p~qQ~lGtT~GALifaiiv~~~~~--------p~~T~~~~iv~~isG~~Ws 70 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF----GGKPYQQTLGTTLGALIFAIIVFLFVS--------PELTLTIFIVGFISGAFWS 70 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec----CCChhHhhhhccHHHHHHHHHHheeec--------CccchhhHHHHHHhhhHhh
Confidence 5677788888999888776664 457777777666555555444333111 0111222333333345557
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHhCCCCchhhHH----HHHHHHHHHHHHHHHHHhhhh
Q psy665 103 AGQLFVFFTIYKFGAIVFTIIMTV-RQGLAILLSCIIYAHPISLLGIL----GILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 103 ~g~~~~~~~i~~~gal~~ai~~~l-r~v~sillsv~~fg~~lt~~~~i----G~~lv~~Gv~~~~~~k~~~k~ 170 (180)
+||...+++++..|...+.++++= +-+-+.+.+++.|+|=-++.|.+ ..++++.|+++.+++++.+|+
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 899999999999999999999875 77788999999999988887753 567778888888776654443
No 72
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.45 E-value=0.26 Score=41.46 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=88.6
Q ss_pred CccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHH---hCchhhHhhHhhcCh-hhHHH
Q psy665 18 TTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQ---QGGFYQSLHFMLQFP-SFTLD 93 (180)
Q Consensus 18 ~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~---~g~~~~~~~~~~~~p-~~~~~ 93 (180)
+.-+.|+++.....++.+.+++=.+|. +.=+||.+--..-+-.-+.+|.... -.++. +.....| +.+..
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv----k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~---~i~~~~~~~~l~~ 75 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV----KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFF---SIYSATPASTLFW 75 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc----CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHH---HHHHhCChhHHHH
Confidence 355899999999999999999777775 3344666554443333344444322 23332 2233333 45566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHH-------hCCCCchhhHHHHHHHHHHHHHHHHH
Q psy665 94 CILLSISSAAGQLFVFFTIYKFGA-IVFTIIMTVRQGLAILLSCII-------YAHPISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 94 l~~~~~~~~~g~~~~~~~i~~~ga-l~~ai~~~lr~v~sillsv~~-------fg~~lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
..++++.=-+|...+-.++|+.|- +..++..-+.-++..++--++ ++++-....++|.++.+.|+.+..+.
T Consensus 76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 677788777788888888998884 344444444444544443333 23344557899999999999888765
No 73
>KOG1581|consensus
Probab=96.07 E-value=0.064 Score=44.33 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHhh-CC------CChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHHHHHHH
Q psy665 35 SFTSNWQGVLFES-YK------VTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAGQLF 107 (180)
Q Consensus 35 a~~~~~~~~l~~~-~~------~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~~g~~~ 107 (180)
-.++++|||+..+ |+ .++.-+.+..++.+.+...+.+-... -...++..|+..-..++.+.++..+
T Consensus 27 l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k-------~~~~~~apl~~y~~is~tn~~s~~~ 99 (327)
T KOG1581|consen 27 LTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWK-------KELSGVAPLYKYSLISFTNTLSSWC 99 (327)
T ss_pred HHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccc-------ccCCCCCchhHHhHHHHHhhcchHH
Confidence 4467889997663 41 34455666666666665533332111 0134455566667778889999999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q psy665 108 VFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 108 ~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~ 168 (180)
-+-++|+.+=.+..+.-..+-+..++++.++.+.+.++.-..=..+|-.|+.+.+..++.+
T Consensus 100 ~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 100 GYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999998887775444
No 74
>KOG1441|consensus
Probab=95.85 E-value=0.35 Score=40.46 Aligned_cols=144 Identities=8% Similarity=0.049 Sum_probs=94.5
Q ss_pred CccHHHHHHHHHHHHh-hhhhHHHHHHHHhhCC-CChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHH
Q psy665 18 TTTLSGVILLALYLSC-DSFTSNWQGVLFESYK-VTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCI 95 (180)
Q Consensus 18 ~~~~~G~~l~l~s~~~-~a~~~~~~~~l~~~~~-~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~ 95 (180)
+....++......-.. .....++.+.++++|+ .-|..++.... ++........-..+.. +.. ....+..|..++
T Consensus 12 ~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~-~~~~l~~~v~~~l~~~-~~~--~~~~~~~~~~ll 87 (316)
T KOG1441|consen 12 LKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHL-FCGALALLVIKVLKLV-PPS--KISSKLPLRTLL 87 (316)
T ss_pred cchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHH-HHHHHHHHHHHHhcCC-CCC--ccccccchHHHH
Confidence 3455555554433333 3444455677887542 23344444433 3333333222222210 000 111235677888
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCch----------------------hhHHHHHH
Q psy665 96 LLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISL----------------------LGILGILM 153 (180)
Q Consensus 96 ~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~----------------------~~~iG~~l 153 (180)
-++++..++..+-...+++.+-...-++..+.|+++.++++++++|+.+. .+|.|...
T Consensus 88 pl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~ 167 (316)
T KOG1441|consen 88 PLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFIS 167 (316)
T ss_pred HHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHH
Confidence 89999999999999999999999999999999999999999999999876 67888888
Q ss_pred HHHHHHHHHHHH
Q psy665 154 VLMAVLLQAYCK 165 (180)
Q Consensus 154 v~~Gv~~~~~~k 165 (180)
.+++......++
T Consensus 168 a~~s~~~~al~~ 179 (316)
T KOG1441|consen 168 AMISNLAFALRN 179 (316)
T ss_pred HHHHHHHHHHHH
Confidence 888887776543
No 75
>KOG4510|consensus
Probab=95.65 E-value=0.0058 Score=49.67 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 95 ILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 95 ~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
++-++.++.|...+|+++++.+-.=+++++...|++++++++++++||.|+...+|..+-+.|+.+..
T Consensus 101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 34567788888899999999998889999999999999999999999999999999999999987654
No 76
>KOG3912|consensus
Probab=95.01 E-value=0.083 Score=43.42 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 97 LSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 97 ~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
=++|-..|...++.++..+.|...-+..-.-.+++-++|.-++++.+++.||+|+..+..|+...-
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 357888888899999999998888888888889999999999999999999999999999987654
No 77
>KOG4314|consensus
Probab=94.66 E-value=0.46 Score=37.25 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=93.5
Q ss_pred CCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCC-ChhhHHHHhHHHHHHHH-HHHHH--HhCchhhHhhHhhcChhhHH
Q psy665 17 KTTTLSGVILLALYLSCDSFTSNWQGVLFESYKV-TSLQMMFGTNLFSCLFT-AVSLL--QQGGFYQSLHFMLQFPSFTL 92 (180)
Q Consensus 17 ~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~-~~~~~~~y~~~~~~i~~-~~~~~--~~g~~~~~~~~~~~~p~~~~ 92 (180)
-..++.|+.+...|.++.|+|-+..++...+-+. +....|....++..++. +|.++ ++| . +.++.... ..|.
T Consensus 130 ~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~-V-E~~qsFA~--~PWG 205 (290)
T KOG4314|consen 130 HADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTG-V-EHLQSFAA--APWG 205 (290)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhc-h-HHHHHHhh--CCch
Confidence 3567999999999999999999888887664321 22333433444444432 23332 233 1 11111111 2355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 93 DCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 93 ~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
-+...+..+..-++.+..++....|...++-+.+....-..+..++=+-..+.....|..++..|..+...
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 55555555555567777888888999988888777777777777776667888899999999999876654
No 78
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.63 E-value=0.053 Score=43.92 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHHHHHH
Q psy665 23 GVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSA 102 (180)
Q Consensus 23 G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~~ 102 (180)
|++..+.|+++-|-..+=.||.- .-+..-...+++.-..+......+. ...|..+...++-+..=+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~---~gDg~~fQw~~~~~i~~~g~~v~~~-----------~~~p~f~p~amlgG~lW~ 66 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD---TGDGFFFQWVMCSGIFLVGLVVNLI-----------LGFPPFYPWAMLGGALWA 66 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc---CCCcHHHHHHHHHHHHHHHHHHHHh-----------cCCCcceeHHHhhhhhhh
Confidence 55667777776666665555432 2255555555554444433333322 233444444444456667
Q ss_pred HHHHHHHHHHHHhchHHHHHHHH-HHHHHHHHHHHH-HhCCC-----CchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy665 103 AGQLFVFFTIYKFGAIVFTIIMT-VRQGLAILLSCI-IYAHP-----ISLLGILGILMVLMAVLLQAYCKLRKA 169 (180)
Q Consensus 103 ~g~~~~~~~i~~~gal~~ai~~~-lr~v~sillsv~-~fg~~-----lt~~~~iG~~lv~~Gv~~~~~~k~~~k 169 (180)
.|+.+..-.++..|=..--.+=. ..-++.=..|-+ +||.+ -.+..++|.++++.|..++.+-|..++
T Consensus 67 ~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 67 TGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred cCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 78888888888887544333322 222222222222 66643 356789999999999999988665543
No 79
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.05 E-value=5 Score=34.04 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=81.6
Q ss_pred CCCccHHHHHHHHHHHHhhhhhH-------HHHHHHHhhCCCChhhHHHHhHH---HHHHH-HHHHHHH---hCc-hhhH
Q psy665 16 GKTTTLSGVILLALYLSCDSFTS-------NWQGVLFESYKVTSLQMMFGTNL---FSCLF-TAVSLLQ---QGG-FYQS 80 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~-------~~~~~l~~~~~~~~~~~~~y~~~---~~~i~-~~~~~~~---~g~-~~~~ 80 (180)
++++.-.|+++++.|-+..+.++ ...+.... .+.++.....-... ++... .++.... .++ ....
T Consensus 168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~ 246 (345)
T PRK13499 168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK 246 (345)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence 34567899999999999999998 33333211 23344322222211 11111 1111111 111 1000
Q ss_pred hhHhhcChhhHHHHH---HHHHHHHHHHHHHHHHHHHhchHHHHH---HH-HHHHHHHHHHHHHHhCCCCc------hhh
Q psy665 81 LHFMLQFPSFTLDCI---LLSISSAAGQLFVFFTIYKFGAIVFTI---IM-TVRQGLAILLSCIIYAHPIS------LLG 147 (180)
Q Consensus 81 ~~~~~~~p~~~~~l~---~~~~~~~~g~~~~~~~i~~~gal~~ai---~~-~lr~v~sillsv~~fg~~lt------~~~ 147 (180)
..+....+..+...+ +-++.=+++++++..+-++.|.....+ ++ .+.-+++.+-|++ ++|.=+ ...
T Consensus 247 ~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l 325 (345)
T PRK13499 247 ADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVL 325 (345)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHH
Confidence 011111122233322 233455677777888888886655544 44 6667889999995 898766 667
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy665 148 ILGILMVLMAVLLQAYC 164 (180)
Q Consensus 148 ~iG~~lv~~Gv~~~~~~ 164 (180)
++|.++++.|..+...+
T Consensus 326 ~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 326 SLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999998876654
No 80
>KOG1580|consensus
Probab=92.58 E-value=0.18 Score=40.51 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=52.0
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 106 LFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 106 ~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
.....+++..+=-+..+-...+|+-.+++|+++-++.-+|....=..+++.|+.+..+..
T Consensus 100 VssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~ 159 (337)
T KOG1580|consen 100 VSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKE 159 (337)
T ss_pred HhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccc
Confidence 334477787777788888889999999999999999999999999999999999987743
No 81
>KOG1444|consensus
Probab=92.25 E-value=5.6 Score=33.20 Aligned_cols=138 Identities=13% Similarity=0.091 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCCh-hhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHHHHHH
Q psy665 20 TLSGVILLALYLSCDSFTSNWQGVLFESYKVTS-LQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLS 98 (180)
Q Consensus 20 ~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~-~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l~~~~ 98 (180)
..-..+..+..|++.-+..+..|..+..|+-|. ..++.+.++.+++.....-. .| +.+...+-.+.++-|..+ +
T Consensus 10 ~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~-~~-lv~~~~l~~~~~kk~~P~---~ 84 (314)
T KOG1444|consen 10 QSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR-LG-LVNFRPLDLRTAKKWFPV---S 84 (314)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-hc-eeecCCcChHHHHHHccH---H
Confidence 334466677777777888888999998886443 45556777766655443211 11 000000001112223221 1
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHH
Q psy665 99 ISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 99 ~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
+.-+.-.+.-...+++.+--...++.+..++.+.+.-+++|+..++...|.-....++|...+.
T Consensus 85 ~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 85 LLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 2222233344477888899999999999999999999999999999999999999998876544
No 82
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=90.76 E-value=0.79 Score=37.99 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=50.5
Q ss_pred cChhhHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHhCC--CCchhh----HHHHHHHHHH
Q psy665 86 QFPSFTLDCILLSISSAAGQ-LFVFFTIYKFGAIVFTIIMTV-RQGLAILLSCIIYAH--PISLLG----ILGILMVLMA 157 (180)
Q Consensus 86 ~~p~~~~~l~~~~~~~~~g~-~~~~~~i~~~gal~~ai~~~l-r~v~sillsv~~fg~--~lt~~~----~iG~~lv~~G 157 (180)
.+|..|..++.+..| .+.| .+..++++++++....++.++ =...+++-|.++|+| ..++.+ ..|..+++.|
T Consensus 208 ~~~~~y~l~~~~v~~-~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~G 286 (300)
T PF05653_consen 208 TYPLTYLLLLVLVVT-AVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIG 286 (300)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 455666555444444 5555 455589999999888777665 455677777888884 455544 4567777788
Q ss_pred HHHHH
Q psy665 158 VLLQA 162 (180)
Q Consensus 158 v~~~~ 162 (180)
+++-+
T Consensus 287 V~lL~ 291 (300)
T PF05653_consen 287 VFLLS 291 (300)
T ss_pred hheee
Confidence 77653
No 83
>KOG4314|consensus
Probab=90.72 E-value=0.1 Score=40.89 Aligned_cols=63 Identities=14% Similarity=0.313 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Q psy665 102 AAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 102 ~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
+..++.+..++++.+|+.++-+....+.+.-+++++++|+.+....++...+.++|+....+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 356778889999999999999999999999999999999999999988888888887655543
No 84
>PRK02237 hypothetical protein; Provisional
Probab=90.26 E-value=4.7 Score=28.32 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 119 VFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 119 ~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
+.+.++-+-.+.|++-.+.+-|.+++..-++|.++++.|+.+..+..
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 34556667788999999999999999999999999999998876654
No 85
>KOG2765|consensus
Probab=90.22 E-value=0.27 Score=41.83 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy665 94 CILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 94 l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~ 166 (180)
.+.++..=+++|+....+++.+.....++.+...-++++.++.++-+|++|+...++.++-++|+.+.+.++.
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence 3555666789999999999999999999999999999999999999999999999999999999988766543
No 86
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=88.80 E-value=0.24 Score=41.02 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=74.9
Q ss_pred HHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHH-HHHhCchh----hHhhHhhcC-hhhHHH---HHHH
Q psy665 27 LALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVS-LLQQGGFY----QSLHFMLQF-PSFTLD---CILL 97 (180)
Q Consensus 27 ~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~-~~~~g~~~----~~~~~~~~~-p~~~~~---l~~~ 97 (180)
++++++||+-+.+.|+-.-++-+.+ +..++=..++..+.... .+..|+.- +...|..+- .+.|.. .+.=
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~--qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aG 78 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLP--QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAG 78 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCcc--ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHh
Confidence 3578999999999998876643222 23333334444433322 23333322 222332211 122322 2223
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH---HhCCCCc--hhhHHHHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCI---IYAHPIS--LLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~---~fg~~lt--~~~~iG~~lv~~Gv~~~~~~ 164 (180)
++.--+|+++..+++...|-.++-+++. =+++++++. +...+.+ ..-+-|.++++..+.+....
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpvg~---glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~a 147 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPVGI---GLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAAA 147 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeeeec---ceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHHH
Confidence 4666788999999999999887777662 233344443 2345555 24566888888888776653
No 87
>KOG2922|consensus
Probab=88.73 E-value=0.27 Score=41.02 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=88.2
Q ss_pred CCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHHH
Q psy665 15 VGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDC 94 (180)
Q Consensus 15 ~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~l 94 (180)
...+.+..|.++.+.|.+.=+...+++||-+++-+... ...++- ..... .+|..|..+
T Consensus 14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~-------------------~ra~~g--g~~yl-~~~~Ww~G~ 71 (335)
T KOG2922|consen 14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASG-------------------LRAGEG--GYGYL-KEPLWWAGM 71 (335)
T ss_pred hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhc-------------------ccccCC--Ccchh-hhHHHHHHH
Confidence 34567899999999999999999999999766531100 111110 00111 233334334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 95 ILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 95 ~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
+. -.+|...-|.+..-.++..+++.+-+.-+.+.+++..+++|++++...+|+++.+.|-+....
T Consensus 72 lt----m~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 72 LT----MIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HH----HHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 33 345666677777888999999999999999999999999999999999999999999765443
No 88
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=87.83 E-value=3.8 Score=28.71 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 120 FTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 120 ~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
.+..+-+-.+.|++-++.+-+++++..-++|.++++.|+.+..+..
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 3445567778899999999999999999999999999998876653
No 89
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=84.71 E-value=0.13 Score=41.39 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=83.5
Q ss_pred CCCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHhhcChhhHHH
Q psy665 14 KVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLD 93 (180)
Q Consensus 14 ~~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~~~~p~~~~~ 93 (180)
..++++.-.|+..++.|.+-.-.|.+..+.. +.+.+....-. .++.+......-..++ . ...+...|..
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPq-AiGMv~~ali~~~~~~---~---~~~~K~t~~n 212 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQ-AIGMVIGALILGFFKM---E---KRFNKYTWLN 212 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHH-HHHHHHHHHHHhhccc---c---cchHHHHHHH
Confidence 4455566788888877765555555443332 33444433322 1233333222211110 0 0111223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhH----HHHHHHHHHHHHH
Q psy665 94 CILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGI----LGILMVLMAVLLQ 161 (180)
Q Consensus 94 l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~----iG~~lv~~Gv~~~ 161 (180)
..-++.=..|+.+++.+-++.|-.+.=.++-+.-+++++-++++++|+=|.+++ +|+.+++.|..+.
T Consensus 213 -ii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 213 -IIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred -HhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 234566678999999999999988888888889999999999999999998875 5777777776554
No 90
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=84.60 E-value=1.5 Score=30.70 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q psy665 132 ILLSCIIYAHPISLLGILGILMVLMAVLL 160 (180)
Q Consensus 132 illsv~~fg~~lt~~~~iG~~lv~~Gv~~ 160 (180)
+..|+++++|++++.+..|.++++++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 46788999999999999999999998764
No 91
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=84.38 E-value=4.4 Score=29.99 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=19.6
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHhC
Q psy665 111 TIYKFGAIVFTIIMTVRQGLAILLSCIIYA 140 (180)
Q Consensus 111 ~i~~~gal~~ai~~~lr~v~sillsv~~fg 140 (180)
.+.+.+.+..+...++-|.+.++++.++++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~ 97 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQ 97 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777777777766665533
No 92
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=82.85 E-value=2.8 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=18.4
Q ss_pred CCCCchhhHH--HHH----HHHHHHHHHHHHHHhhhhhhhc
Q psy665 140 AHPISLLGIL--GIL----MVLMAVLLQAYCKLRKASLKKK 174 (180)
Q Consensus 140 g~~lt~~~~i--G~~----lv~~Gv~~~~~~k~~~k~~~~~ 174 (180)
=+.++|-||. |.+ +.+++.+...+.|.|+.||+++
T Consensus 25 ld~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 25 LDQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred HhccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHhh
Confidence 3667776766 333 3344444555666555554443
No 93
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=82.62 E-value=1.6 Score=31.42 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=13.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHH
Q psy665 140 AHPISLLGILGILMVLMAVLLQA 162 (180)
Q Consensus 140 g~~lt~~~~iG~~lv~~Gv~~~~ 162 (180)
++..+....+|-++.-.|+++-.
T Consensus 74 n~~~si~~~~G~vlLs~GLmlL~ 96 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLMLLA 96 (129)
T ss_pred cCCcchhhhehHHHHHHHHHHHH
Confidence 44555556666666666655544
No 94
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.56 E-value=4 Score=28.27 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHH----HHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 124 MTVRQGLA----ILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 124 ~~lr~v~s----illsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
.+++-+++ ..+|++.++||+.+-++.|.+++.+|++..
T Consensus 72 K~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 72 KTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 34444444 457999999999999999999999998765
No 95
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=80.87 E-value=2.4 Score=28.40 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy665 142 PISLLGILGILMVLMAVLLQAYCKLRKASLKKKL 175 (180)
Q Consensus 142 ~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~~~~~~ 175 (180)
.++|...+|+.++++|+.+|..++.+++-.|+.|
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~Rd~D 37 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEVSRDYD 37 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcchhhhhh
Confidence 4688999999999999999987766665555543
No 96
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=78.15 E-value=19 Score=24.59 Aligned_cols=63 Identities=21% Similarity=0.057 Sum_probs=30.4
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHH--hCCCCchh--hHHHHHHHHHHHHHHHHHHHhhhh
Q psy665 108 VFFTIYKFGAIVFTIIMTVRQGLAILLSCII--YAHPISLL--GILGILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 108 ~~~~i~~~gal~~ai~~~lr~v~sillsv~~--fg~~lt~~--~~iG~~lv~~Gv~~~~~~k~~~k~ 170 (180)
...++++++-.-.-.+-.+.-++.+++|++. +.+..++. .|.|...=+++-.+.-...+|.+|
T Consensus 21 lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~ 87 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKK 87 (93)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhh
Confidence 3566676653333333333444555555442 33333333 478876666665554444333333
No 97
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=77.60 E-value=26 Score=28.53 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=18.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHH
Q psy665 143 ISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 143 lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
++..|+++..+++.|+.+..+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998776554
No 98
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=77.17 E-value=3.7 Score=24.03 Aligned_cols=16 Identities=6% Similarity=0.347 Sum_probs=7.4
Q ss_pred chhhHHHHHHHHHHHH
Q psy665 144 SLLGILGILMVLMAVL 159 (180)
Q Consensus 144 t~~~~iG~~lv~~Gv~ 159 (180)
+|..++=.++++.|++
T Consensus 3 ~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIF 18 (49)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 99
>KOG2766|consensus
Probab=74.08 E-value=0.84 Score=37.22 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=89.3
Q ss_pred CCccHHHHHHH-HHHHHhhhhhHHHHHHHHhhCCCChhhHHHHhHHH-HHHHHHHHHHHhCchhhHhhHhhcCh-hhHHH
Q psy665 17 KTTTLSGVILL-ALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTNLF-SCLFTAVSLLQQGGFYQSLHFMLQFP-SFTLD 93 (180)
Q Consensus 17 ~~~~~~G~~l~-l~s~~~~a~~~~~~~~l~~~~~~~~~~~~~y~~~~-~~i~~~~~~~~~g~~~~~~~~~~~~p-~~~~~ 93 (180)
+++.++|+.+. +.|+++.+....-++-. ++ +.+......+.|-. =++.-.+...+. +..- ..|..
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la-~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR----------~~~~~~~~~h 80 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELA-RK-GINAPTSQTFLNYVLLALVYGPIMLFR----------RKYIKAKWRH 80 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHH-hc-cCCCccHHHHHHHHHHHHHHhhHHHhh----------hHHHHHHHHH
Confidence 56777777664 56666666555444443 32 23433333333211 111111222211 1111 23555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 94 CILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 94 l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
-+++++...=+++++..+.++++-+.+.....-..+...++||++++.+-.+.++.|.++.+.|+.....
T Consensus 81 Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 81 YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 5667777888999999999999999999999888899999999999999999999999999999866544
No 100
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=73.50 E-value=6.9 Score=31.16 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=26.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy665 142 PISLLGILGILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 142 ~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~ 170 (180)
++++..++|.++.+.|+.++.....++++
T Consensus 116 ~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~ 144 (235)
T PF06966_consen 116 PLNWLDILGIALFLIGFLLETVADQQKYR 144 (235)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998877665
No 101
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=72.56 E-value=3.2 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccC
Q psy665 151 ILMVLMAVLLQAYCKLRKASLKKKLN 176 (180)
Q Consensus 151 ~~lv~~Gv~~~~~~k~~~k~~~~~~~ 176 (180)
..++++|+.++.+.++++|+-.|+++
T Consensus 19 ~~~~Figiv~wa~~p~~k~~f~eaa~ 44 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKAFDEAAN 44 (48)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHc
Confidence 56788999999998777666555544
No 102
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=71.72 E-value=45 Score=25.85 Aligned_cols=37 Identities=5% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q psy665 132 ILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 132 illsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~ 168 (180)
-.+|..+|++-.-|...+|..+..+=+......++|+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~~ 169 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRER 169 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4457778888888888899888776666665665544
No 103
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=71.30 E-value=28 Score=25.73 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=57.8
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Q psy665 85 LQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 85 ~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
..-|+..--++...+.+......+++.+++.|....++-. ++-..-+++.+--.+++.++.|+.+++.=++.. ..
T Consensus 42 ~elPEAl~till~~ll~~~T~G~~~~lm~~kgi~rm~lG~----~vm~~~~~llw~ggv~~~~IAg~~lv~filmvV-Li 116 (144)
T PF01350_consen 42 EELPEALETILLVVLLGVMTLGVFWFLMRRKGIGRMSLGM----LVMAVAGYLLWMGGVPPGQIAGVLLVFFILMVV-LI 116 (144)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhHHH----HHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHh-cc
Confidence 3457776666666655555555666777777777766554 344555677777789999999999987654443 44
Q ss_pred HHhhhhhhhccCc
Q psy665 165 KLRKASLKKKLNQ 177 (180)
Q Consensus 165 k~~~k~~~~~~~~ 177 (180)
....|+|--+|||
T Consensus 117 PEpg~QRS~~DN~ 129 (144)
T PF01350_consen 117 PEPGKQRSQQDNQ 129 (144)
T ss_pred cCCCCcCCcccch
Confidence 4455555556665
No 104
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=69.16 E-value=39 Score=29.86 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=19.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH
Q psy665 143 ISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 143 lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
++..||+...++++|+.+..+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999987765543
No 105
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=65.97 E-value=5.2 Score=23.68 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy665 151 ILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 151 ~~lv~~Gv~~~~~~k~~~k~ 170 (180)
..+++.|+.++.+.++|+++
T Consensus 18 ~~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHHHHcccchhh
Confidence 44566788888886655443
No 106
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=65.48 E-value=20 Score=25.79 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHHHHHH
Q psy665 118 IVFTIIMTVRQGLAILLSCIIYAHPI---SLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 118 l~~ai~~~lr~v~sillsv~~fg~~l---t~~~~iG~~lv~~Gv~~~ 161 (180)
+..+.+.++-|++.++++.++-. .+ .+...++.++.++..+..
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l~~-~~~~~e~~~~l~~l~~l~~~~~~ 113 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVLGS-YLGGSELWAILGGLLGLALGFLI 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666555554321 11 444444444444444443
No 107
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=65.34 E-value=75 Score=25.99 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=19.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH
Q psy665 143 ISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 143 lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
+|..|++...+++.|+.+..+.+
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~ 268 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAY 268 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999987765544
No 108
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=64.61 E-value=61 Score=26.34 Aligned_cols=23 Identities=13% Similarity=0.557 Sum_probs=18.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH
Q psy665 143 ISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 143 lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
+|..||++..+++.|+.+..+.+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999987664433
No 109
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=64.04 E-value=32 Score=24.08 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 121 TIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 121 ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
+-.+-+-.+.|+.-..++=|..++..-|+|.++.+.|+.+..+..
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 334445667788888888899999999999999999987665543
No 110
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=61.75 E-value=71 Score=25.83 Aligned_cols=59 Identities=8% Similarity=0.252 Sum_probs=49.9
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q psy665 110 FTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 110 ~~i~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~ 168 (180)
..++...-...+++.++..++....-+.+||.+++......-.+.+.+-+...|+..+.
T Consensus 87 KsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~ 145 (309)
T COG5070 87 KSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQA 145 (309)
T ss_pred cceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhH
Confidence 55666666777888888888888889999999999999999999999999988887653
No 111
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=60.72 E-value=1.1e+02 Score=26.54 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHHHH-HHhCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q psy665 126 VRQGLAILLSC-IIYAHPISLLGILGILMVLMAVLLQAYCKLR 167 (180)
Q Consensus 126 lr~v~sillsv-~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~ 167 (180)
.-++++.+... +.+... ....+.|.+++..|+.+|.+.+++
T Consensus 397 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 397 IVGVIACVYSIWLLYAAG-LKYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444333 333332 235677999999998888775543
No 112
>KOG2922|consensus
Probab=57.28 E-value=43 Score=28.19 Aligned_cols=75 Identities=16% Similarity=0.286 Sum_probs=50.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHhCC--CCchhh----HHHHHHHHHHHH
Q psy665 87 FPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTV-RQGLAILLSCIIYAH--PISLLG----ILGILMVLMAVL 159 (180)
Q Consensus 87 ~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~l-r~v~sillsv~~fg~--~lt~~~----~iG~~lv~~Gv~ 159 (180)
+|..|...+.+..|...=.....++++.+++..++++-++ =..++++.|.++|+| ..+..+ ..|...++.|++
T Consensus 223 ~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~f 302 (335)
T KOG2922|consen 223 YPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIF 302 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheee
Confidence 4544544444444433333445599999999988887766 667788889999984 344444 456777777877
Q ss_pred HH
Q psy665 160 LQ 161 (180)
Q Consensus 160 ~~ 161 (180)
+.
T Consensus 303 lL 304 (335)
T KOG2922|consen 303 LL 304 (335)
T ss_pred Ee
Confidence 65
No 113
>PF14981 FAM165: FAM165 family
Probab=55.77 E-value=18 Score=21.30 Aligned_cols=14 Identities=7% Similarity=0.085 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q psy665 152 LMVLMAVLLQAYCK 165 (180)
Q Consensus 152 ~lv~~Gv~~~~~~k 165 (180)
.+.|+|+=+|...+
T Consensus 21 ClaFAgvK~yQ~kr 34 (51)
T PF14981_consen 21 CLAFAGVKMYQRKR 34 (51)
T ss_pred HHHHhhHHHHHHHH
Confidence 56778887776544
No 114
>COG1971 Predicted membrane protein [Function unknown]
Probab=54.04 E-value=41 Score=26.12 Aligned_cols=33 Identities=3% Similarity=0.212 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHH-HHHHH
Q psy665 126 VRQGLAILLSCIIYAHPISLLGILGILM-VLMAV 158 (180)
Q Consensus 126 lr~v~sillsv~~fg~~lt~~~~iG~~l-v~~Gv 158 (180)
+.|.+.-..+.++=+-.-.+-+|+|.++ .+.|.
T Consensus 49 i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~ 82 (190)
T COG1971 49 IMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGL 82 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333345667776554 44454
No 115
>PF01066 CDP-OH_P_transf: CDP-alcohol phosphatidyltransferase; InterPro: IPR000462 A number of phosphatidyltransferases, which are all involved in phospholipid biosynthesis and that share the property of catalyzing the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond share a conserved sequence region [, ]. These enzymes are proteins of 200 to 400 amino acid residues. The conserved region contains three aspartic acid residues and is located in the N-terminal section of the sequences.; GO: 0016780 phosphotransferase activity, for other substituted phosphate groups, 0008654 phospholipid biosynthetic process, 0016020 membrane
Probab=53.22 E-value=67 Score=21.58 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 119 VFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 119 ~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
+.+.++..|-+.+.+..+.+..++. .+.+..+...+......-.
T Consensus 4 ~pN~iT~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~D~~DG 47 (101)
T PF01066_consen 4 TPNAITLLRLLLGFLAALLLLQGRP---LLLAALLLFLAFLLDGLDG 47 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHHHHH
Confidence 3456677788887777777766554 6777777777777776543
No 116
>KOG1442|consensus
Probab=53.17 E-value=2.6 Score=34.73 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=65.4
Q ss_pred ChhhHHHHhHHHHHHHHHHHHHHhCchhhHhhHh--hcChhhHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q psy665 51 TSLQMMFGTNLFSCLFTAVSLLQQGGFYQSLHFM--LQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQ 128 (180)
Q Consensus 51 ~~~~~~~y~~~~~~i~~~~~~~~~g~~~~~~~~~--~~~p~~~~~l~~~~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~ 128 (180)
.|.-+++|..+..+.+........-.....+.|. +.+-+....+.=+++.-..+..+-..+++..|....-+-..+..
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 4566777777766665554332211000001111 11112223344444444444555557777777776666677788
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q psy665 129 GLAILLSCIIYAHPISLLGILGILMVLMAVLL 160 (180)
Q Consensus 129 v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~ 160 (180)
++++++++++++++-+..-..++.+|+.|..+
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehhee
Confidence 99999999999999888888888888777544
No 117
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=51.04 E-value=1.4e+02 Score=25.84 Aligned_cols=38 Identities=13% Similarity=0.317 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHH---hCCCCchhhHHHHHHHHHHH
Q psy665 121 TIIMTVRQGLAILLSCII---YAHPISLLGILGILMVLMAV 158 (180)
Q Consensus 121 ai~~~lr~v~sillsv~~---fg~~lt~~~~iG~~lv~~Gv 158 (180)
..+...-++++..+++.+ ++.+-++..++|.++++.-.
T Consensus 356 ~~~~~~~~~i~~~l~i~f~~~~~~~~~~~~~vg~vi~~i~~ 396 (438)
T PF06011_consen 356 NIILSVVRLITLFLLIAFLPSLNLSEIVRTVVGYVIIIINA 396 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCccccchhhHHHHHHHH
Confidence 334444455555555554 45567888999988776554
No 118
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=49.97 E-value=1.4e+02 Score=25.64 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy665 149 LGILMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 149 iG~~lv~~Gv~~~~~~k~~~ 168 (180)
.|..+++.|+.+|.+.++|+
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~ 438 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRS 438 (445)
T ss_pred HHHHHHHHhhhHHhheechh
Confidence 57888888888777655443
No 119
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=49.90 E-value=30 Score=27.72 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=17.9
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHhhhhhhhc
Q psy665 146 LGILGI-LMVLMAVLLQAYCKLRKASLKKK 174 (180)
Q Consensus 146 ~~~iG~-~lv~~Gv~~~~~~k~~~k~~~~~ 174 (180)
+.++.+ .+|++.+.+.-|+|+|--|.++|
T Consensus 201 Wv~l~iG~iIi~tLtYvGwRKYrgek~~~k 230 (232)
T PF09577_consen 201 WVMLSIGGIIIATLTYVGWRKYRGEKEKRK 230 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444 45556677778999886555544
No 120
>PRK11469 hypothetical protein; Provisional
Probab=48.77 E-value=61 Score=24.91 Aligned_cols=38 Identities=5% Similarity=0.141 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q psy665 117 AIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMV 154 (180)
Q Consensus 117 al~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv 154 (180)
+...+.++.+-|..+..++-.+-+-.....+|+|..+.
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL 77 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLL 77 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777776554433445578887654
No 121
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=48.32 E-value=20 Score=25.20 Aligned_cols=14 Identities=7% Similarity=0.294 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q psy665 152 LMVLMAVLLQAYCK 165 (180)
Q Consensus 152 ~lv~~Gv~~~~~~k 165 (180)
.+++.+++++...+
T Consensus 10 lv~i~~i~yF~~iR 23 (109)
T PRK05886 10 FLLIMGGFMYFASR 23 (109)
T ss_pred HHHHHHHHHHHHcc
Confidence 34444555554443
No 122
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=48.27 E-value=15 Score=24.52 Aligned_cols=9 Identities=11% Similarity=0.582 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy665 152 LMVLMAVLL 160 (180)
Q Consensus 152 ~lv~~Gv~~ 160 (180)
.+++.++++
T Consensus 9 ~vv~~~i~y 17 (84)
T TIGR00739 9 LVLIFLIFY 17 (84)
T ss_pred HHHHHHHHH
Confidence 333344443
No 123
>PRK11562 nitrite transporter NirC; Provisional
Probab=47.76 E-value=8.9 Score=31.34 Aligned_cols=37 Identities=22% Similarity=0.086 Sum_probs=22.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccC
Q psy665 142 PISLLGILGILMVLMAVLLQAYCKLRKASLKKKLNQAE 179 (180)
Q Consensus 142 ~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~~~~~~~~~~ 179 (180)
|.+...++|..+.++..+++...+ ++|.++.|-||.|
T Consensus 228 pvtLGNivGG~v~vg~~y~~~~~~-~~~~~~~~~~~~~ 264 (268)
T PRK11562 228 WVTLGNTLSGAVFMGLGYWYATPK-ANRPVAAKFNQTE 264 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CcCchhhhHhhhh
Confidence 355667888887777777665543 3334445666655
No 124
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=47.64 E-value=62 Score=24.44 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=36.7
Q ss_pred CCCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhC-CCChhhHHHHhHHHHHHH
Q psy665 15 VGKTTTLSGVILLALYLSCDSFTSNWQGVLFESY-KVTSLQMMFGTNLFSCLF 66 (180)
Q Consensus 15 ~~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~-~~~~~~~~~y~~~~~~i~ 66 (180)
.+..++..|-.+++.|-++.+..-.-.-.+++++ ....+.+|||--+.+...
T Consensus 115 ~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~fWCeFtAsFL 167 (184)
T PF15108_consen 115 HSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLMFWCEFTASFL 167 (184)
T ss_pred hhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHHHHHHHHHHHH
Confidence 3456788898888888888777666666667665 456678888876655543
No 125
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=46.51 E-value=20 Score=25.00 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy665 151 ILMVLMAVLL 160 (180)
Q Consensus 151 ~~lv~~Gv~~ 160 (180)
..+++.++++
T Consensus 23 ~lvii~~i~y 32 (106)
T PRK05585 23 PLVVFFAIFY 32 (106)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 126
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=45.71 E-value=2.2e+02 Score=25.28 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHhCCCCchh-hHHH----HHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLA--ILLSCIIYAHPISLL-GILG----ILMVLMAVLLQAYCK 165 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal~~ai~~~lr~v~s--illsv~~fg~~lt~~-~~iG----~~lv~~Gv~~~~~~k 165 (180)
++++.+.|.+.-+.++++|-..++.++.+-..++ ..++..+|+++..+. .+.| ...++.|.......|
T Consensus 313 gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~~v~~k 387 (472)
T TIGR00769 313 GVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQNILSK 387 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHHHHHHH
Confidence 4555566766688999999999999887755554 456667788776541 1223 334455544444443
No 127
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=44.17 E-value=2.1e+02 Score=24.78 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHhCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q psy665 136 CIIYAHPISLLGILGILMVLMAVLLQAYCKLR 167 (180)
Q Consensus 136 v~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~ 167 (180)
+..+.... ...++|..+...|+.+|.+.+++
T Consensus 403 ~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 403 WLIYAAGL-KYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444443 35788889999999888774443
No 128
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=44.06 E-value=52 Score=19.00 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=19.4
Q ss_pred HhCCCCchhhHHHHHHHHHH-HHHHHHHHHhh
Q psy665 138 IYAHPISLLGILGILMVLMA-VLLQAYCKLRK 168 (180)
Q Consensus 138 ~fg~~lt~~~~iG~~lv~~G-v~~~~~~k~~~ 168 (180)
+|+++......+.++.+++= +++..+..+|.
T Consensus 6 LF~s~vGL~Sl~vI~~~igm~~~~~~~F~~k~ 37 (42)
T PF11346_consen 6 LFGSDVGLMSLIVIVFTIGMGVFFIRYFIRKM 37 (42)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888888887766543 34444444433
No 129
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=43.47 E-value=53 Score=23.50 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy665 150 GILMVLMAVLLQ 161 (180)
Q Consensus 150 G~~lv~~Gv~~~ 161 (180)
|.++.+..+-++
T Consensus 106 ~l~~~~~~~~~~ 117 (135)
T PF04246_consen 106 GLALGFLILRLF 117 (135)
T ss_pred HHHHHHHHHHHH
Confidence 444444455554
No 130
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=42.05 E-value=38 Score=19.14 Aligned_cols=23 Identities=13% Similarity=0.548 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy665 148 ILGILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 148 ~iG~~lv~~Gv~~~~~~k~~~k~ 170 (180)
.+|+++++.-+++|....+|.++
T Consensus 13 ~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHccccc
Confidence 45888888888888877655543
No 131
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=41.43 E-value=38 Score=26.20 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q psy665 120 FTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLR 167 (180)
Q Consensus 120 ~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~ 167 (180)
...+.+..++...+.++..+++..+..+++..+++..|+....+.+.+
T Consensus 7 ~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q 54 (222)
T TIGR00803 7 HIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQ 54 (222)
T ss_pred hHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHH
Confidence 344556678888888898999998899999999999998877776544
No 132
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=40.90 E-value=18 Score=22.33 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=16.8
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHH
Q psy665 141 HPISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 141 ~~lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
|..+...++|..++-+++..+...
T Consensus 14 HR~tV~~Lig~T~~~g~~~~~~~y 37 (59)
T PF14880_consen 14 HRTTVLGLIGFTVYGGGLTVYTVY 37 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788888887777766543
No 133
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=40.86 E-value=1.3e+02 Score=23.40 Aligned_cols=45 Identities=13% Similarity=0.300 Sum_probs=25.5
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHhCCCCc--hhhHHHHHH-HHHHHH
Q psy665 114 KFGAIVFTIIMTVRQGLAILLSCIIYAHPIS--LLGILGILM-VLMAVL 159 (180)
Q Consensus 114 ~~gal~~ai~~~lr~v~sillsv~~fg~~lt--~~~~iG~~l-v~~Gv~ 159 (180)
...+...+.++.+-+..+..++-.+=+ -+. .-+|+|..+ ++.|+.
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~-~i~~~~~~~ig~~iLi~iG~~ 77 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLAK-FLPPKVTEILGAFILIAIGIW 77 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHH
Confidence 345566666666777777777666533 332 346666543 444543
No 134
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=40.84 E-value=40 Score=19.61 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy665 149 LGILMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 149 iG~~lv~~Gv~~~~~~k~~~ 168 (180)
.-+++++++....++.++|.
T Consensus 12 g~t~~~l~~l~~~~~~~~r~ 31 (46)
T PF04995_consen 12 GVTALVLAGLIVWSLRRRRR 31 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666665544
No 135
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=39.29 E-value=1.7e+02 Score=22.34 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy665 132 ILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 132 illsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k~~~k~ 170 (180)
-.+|..+|.|-.-|....|..+.++-+......++|+++
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~~~~~ 170 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTHDLIIE 170 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 345778888888888899988887777666666655443
No 136
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.28 E-value=37 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy665 145 LLGILGILMVLMAVLLQAYCKLRKASLK 172 (180)
Q Consensus 145 ~~~~iG~~lv~~Gv~~~~~~k~~~k~~~ 172 (180)
..|++.+.+++.|+....+.++|.|+++
T Consensus 254 mgqilSi~mIl~Gi~~~~~~~~k~~~~~ 281 (287)
T COG0682 254 MGQILSIPMILLGLWLIIYLYKKAKKKP 281 (287)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3799999999999988887765544443
No 137
>PF13994 PgaD: PgaD-like protein
Probab=37.14 E-value=84 Score=22.75 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=13.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHh
Q psy665 143 ISLLGILGILMVLMAVLLQAYCKLR 167 (180)
Q Consensus 143 lt~~~~iG~~lv~~Gv~~~~~~k~~ 167 (180)
....+.-..++++.++.+..|.+.+
T Consensus 61 ~~~l~~y~~i~~~~a~~Li~Wa~yn 85 (138)
T PF13994_consen 61 LNTLQIYLLIALVNAVILILWAKYN 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666666666544
No 138
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=36.36 E-value=23 Score=21.03 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy665 149 LGILMVLMAVLLQAYCKLRKA 169 (180)
Q Consensus 149 iG~~lv~~Gv~~~~~~k~~~k 169 (180)
-|..++-+|+|++...|++.|
T Consensus 9 SG~GLig~G~Yv~~~ark~~k 29 (47)
T PF15055_consen 9 SGGGLIGAGAYVYAQARKRMK 29 (47)
T ss_pred cccchHHHHHHHHHHHhhccc
Confidence 466777778888877766543
No 139
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=35.91 E-value=63 Score=20.05 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy665 146 LGILGILMVLMAVLLQAY 163 (180)
Q Consensus 146 ~~~iG~~lv~~Gv~~~~~ 163 (180)
..++|..+-+.|..+|..
T Consensus 8 ~~~~ggfVg~iG~a~Ypi 25 (58)
T PF15061_consen 8 ALFVGGFVGLIGAALYPI 25 (58)
T ss_pred hhhHHHHHHHHHHHHhhh
Confidence 356888888889888864
No 140
>PHA03231 glycoprotein BALF4; Provisional
Probab=35.87 E-value=1.3e+02 Score=28.77 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=24.1
Q ss_pred HHHHHhchHH-HHHHHHHHHHHHHHHHHH-HhCCCCchhhHHHHHHHHH
Q psy665 110 FTIYKFGAIV-FTIIMTVRQGLAILLSCI-IYAHPISLLGILGILMVLM 156 (180)
Q Consensus 110 ~~i~~~gal~-~ai~~~lr~v~sillsv~-~fg~~lt~~~~iG~~lv~~ 156 (180)
..+.-.|-.. .++.+...-+.+++-|++ ++.||+....++..++..+
T Consensus 669 ~gLG~vGk~vg~vv~~v~ga~~SiVsG~~sFl~NPFGg~~iillvia~v 717 (829)
T PHA03231 669 QGLGAVGKAVGNVVSGVAGAVGSIVSGVISFLKNPFGGLAIGLLVIAVL 717 (829)
T ss_pred hhhhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 3444444222 223333344555666666 6788877666555444433
No 141
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=35.71 E-value=78 Score=20.78 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 130 LAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 130 ~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
+..+..++.++.+....-.+|.++.+.......+.-
T Consensus 12 ~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~ 47 (100)
T PF03899_consen 12 VLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRV 47 (100)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555677777777788888777776665543
No 142
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.66 E-value=33 Score=21.46 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q psy665 149 LGILMVLMAVLLQAYCKLRKASL 171 (180)
Q Consensus 149 iG~~lv~~Gv~~~~~~k~~~k~~ 171 (180)
+=..+++.|+.++.+++.|+++.
T Consensus 16 ~~~~l~fiavi~~ayr~~~K~~~ 38 (60)
T COG4736 16 IAFTLFFIAVIYFAYRPGKKGEF 38 (60)
T ss_pred HHHHHHHHHHHHHHhcccchhhH
Confidence 34556777888887776555443
No 143
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=35.65 E-value=32 Score=18.18 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=8.2
Q ss_pred CCchhhHHHHHHHHH
Q psy665 142 PISLLGILGILMVLM 156 (180)
Q Consensus 142 ~lt~~~~iG~~lv~~ 156 (180)
.-++..++|.+++.+
T Consensus 9 ~~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 9 GNSLLLLLGLLLLGL 23 (34)
T ss_pred ccHHHHHHHHHHHHH
Confidence 345566777744444
No 144
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=34.36 E-value=68 Score=18.53 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy665 152 LMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 152 ~lv~~Gv~~~~~~k~~~ 168 (180)
++++++....++.++|.
T Consensus 16 ~l~l~~li~~~~~~~r~ 32 (45)
T TIGR03141 16 ALVLAGLILWSLLDRRR 32 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555444
No 145
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=33.54 E-value=29 Score=22.43 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCc
Q psy665 154 VLMAVLLQAYCKLRKASLKKKLNQ 177 (180)
Q Consensus 154 v~~Gv~~~~~~k~~~k~~~~~~~~ 177 (180)
.+.++.+..|+-.|+|.|-.|+.|
T Consensus 21 ~~~~~~wi~~Ra~~~~DKT~~eRQ 44 (72)
T PF13268_consen 21 LLVSGIWILWRALRKKDKTAKERQ 44 (72)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHH
Confidence 334445555554444433334333
No 146
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=33.27 E-value=67 Score=21.32 Aligned_cols=19 Identities=16% Similarity=0.599 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy665 145 LLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 145 ~~~~iG~~lv~~Gv~~~~~ 163 (180)
....+|..+.+.|......
T Consensus 4 ~~Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFVF 22 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3446677777777666553
No 147
>PRK10655 potE putrescine transporter; Provisional
Probab=33.22 E-value=3.1e+02 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy665 146 LGILGILMVLMAVLLQAYCKLRKASLKK 173 (180)
Q Consensus 146 ~~~iG~~lv~~Gv~~~~~~k~~~k~~~~ 173 (180)
....|..+++.|..+|.+..+|..+|+|
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 409 AMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4466888888998888665444444443
No 148
>PF15102 TMEM154: TMEM154 protein family
Probab=31.06 E-value=18 Score=26.84 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy665 148 ILGILMVLMAVLLQAYC 164 (180)
Q Consensus 148 ~iG~~lv~~Gv~~~~~~ 164 (180)
+++.++++..+++..+.
T Consensus 66 VLLvlLLl~vV~lv~~~ 82 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYY 82 (146)
T ss_pred HHHHHHHHHHHHheeEE
Confidence 34444445555555444
No 149
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.78 E-value=66 Score=21.68 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy665 148 ILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 148 ~iG~~lv~~Gv~~~~~~k 165 (180)
+.|.+-++++++.|.+.|
T Consensus 7 v~~~~~v~~~i~~y~~~k 24 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWK 24 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335555555555555544
No 150
>PTZ00046 rifin; Provisional
Probab=29.28 E-value=1.3e+02 Score=25.78 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy665 152 LMVLMAVLLQAYCKLRKASL 171 (180)
Q Consensus 152 ~lv~~Gv~~~~~~k~~~k~~ 171 (180)
++|+.-+.+|..-++|.|||
T Consensus 326 VIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 326 VIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHhhhcch
Confidence 34455566666555555444
No 151
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=28.72 E-value=69 Score=27.79 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.6
Q ss_pred hCCCCchhhHHHHHHHHH
Q psy665 139 YAHPISLLGILGILMVLM 156 (180)
Q Consensus 139 fg~~lt~~~~iG~~lv~~ 156 (180)
+=.|+-|.|++|...++.
T Consensus 174 l~~pliP~~i~Gl~~vl~ 191 (433)
T COG2851 174 LFVPLIPIQIIGLVLVLA 191 (433)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 336788999999998877
No 152
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=28.15 E-value=1.1e+02 Score=18.48 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCCc----hhhHHHHHHHHHHHHHH
Q psy665 129 GLAILLSCIIYAHPIS----LLGILGILMVLMAVLLQ 161 (180)
Q Consensus 129 v~sillsv~~fg~~lt----~~~~iG~~lv~~Gv~~~ 161 (180)
+..+++|++.+-+|-. ....+|..+++.|+.-.
T Consensus 4 il~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l 40 (72)
T PF03729_consen 4 ILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQL 40 (72)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544422 23456666666666544
No 153
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=27.86 E-value=3.9e+02 Score=23.93 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q psy665 117 AIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMA 157 (180)
Q Consensus 117 al~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~G 157 (180)
+...+.+...--++.++....++|-++|...+.|.+++++=
T Consensus 357 ~glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~ 397 (498)
T PRK05812 357 FGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGM 397 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhhee
Confidence 44445555555556666666788999999999988877643
No 154
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=27.17 E-value=3.9e+02 Score=24.03 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q psy665 118 IVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMA 157 (180)
Q Consensus 118 l~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~G 157 (180)
...++...+ -++-++...-.++-++|...+.|+++.++-
T Consensus 369 via~ial~~-n~~lil~vls~lgatLtLpgIAGiILtIGm 407 (506)
T COG0342 369 VIAAIALGL-NGVLILAVLSLLGATLTLPGIAGIILTIGM 407 (506)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhcccccchhhhHHHHhhhh
Confidence 333333333 444445555566999999999999988754
No 155
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=26.92 E-value=50 Score=24.20 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=26.6
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLF 45 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~ 45 (180)
.-+++++|.+|+-.=.+.|++|.++++.+-
T Consensus 100 Glsn~~LgwIL~gVf~lIWslY~~~~~~l~ 129 (138)
T PF07123_consen 100 GLSNNLLGWILLGVFGLIWSLYFVYTSTLD 129 (138)
T ss_pred cccCchhHHHHHHHHHHHHHHHHhhccccC
Confidence 557899999999999999999999988764
No 156
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=26.69 E-value=1.5e+02 Score=25.36 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy665 152 LMVLMAVLLQAYCKLRKASL 171 (180)
Q Consensus 152 ~lv~~Gv~~~~~~k~~~k~~ 171 (180)
++|+.-+.+|..-++|.|||
T Consensus 321 vIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 321 IIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHhhhcch
Confidence 34444566665555555444
No 157
>KOG4831|consensus
Probab=26.17 E-value=76 Score=22.39 Aligned_cols=59 Identities=10% Similarity=0.202 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q psy665 102 AAGQLFVFFTIYKFGAIVFTIIMTV-RQGLAILLSCIIYAHPISLLGILGILMVLMAVLL 160 (180)
Q Consensus 102 ~~g~~~~~~~i~~~gal~~ai~~~l-r~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~ 160 (180)
-.|...++..+++.+-..+.++.+. .-+++...+..+=.|.......+|+.++..|+.+
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 3455567788888888877777664 6677888888875666777889999999998754
No 158
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=25.62 E-value=82 Score=17.08 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy665 151 ILMVLMAVLLQAYCKLRKA 169 (180)
Q Consensus 151 ~~lv~~Gv~~~~~~k~~~k 169 (180)
++++++|..++.+.|.+++
T Consensus 6 i~L~l~ga~f~~fKKyQ~~ 24 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNH 24 (33)
T ss_pred ehhhhhhHHHHHHHHHHHH
Confidence 3577888888888777754
No 159
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=77 Score=23.66 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy665 151 ILMVLMAVLLQAYCKLRKA 169 (180)
Q Consensus 151 ~~lv~~Gv~~~~~~k~~~k 169 (180)
.+++++|+.++...++|.+
T Consensus 114 ~llllG~~~~~~~~rrr~~ 132 (153)
T COG3088 114 VLLLLGGVLLVRRARRRVR 132 (153)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 4555666666655555543
No 160
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.36 E-value=71 Score=19.21 Aligned_cols=12 Identities=8% Similarity=0.412 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy665 150 GILMVLMAVLLQ 161 (180)
Q Consensus 150 G~~lv~~Gv~~~ 161 (180)
++++.+.|+.+.
T Consensus 22 A~vlfi~Gi~ii 33 (50)
T PF02038_consen 22 AGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444555443
No 161
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=24.34 E-value=27 Score=19.98 Aligned_cols=17 Identities=12% Similarity=0.638 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy665 149 LGILMVLMAVLLQAYCK 165 (180)
Q Consensus 149 iG~~lv~~Gv~~~~~~k 165 (180)
+|.++++.+.+++.|.+
T Consensus 21 V~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYR 37 (40)
T ss_pred hHHHHHHHHHHhheEEe
Confidence 34555556666665543
No 162
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=24.29 E-value=1.5e+02 Score=18.94 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q psy665 148 ILGILMVLMAVLL 160 (180)
Q Consensus 148 ~iG~~lv~~Gv~~ 160 (180)
++|+.+||..+.+
T Consensus 9 i~Gm~iVF~~L~l 21 (79)
T PF04277_consen 9 IIGMGIVFLVLIL 21 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666655433
No 163
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.13 E-value=88 Score=22.45 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=4.0
Q ss_pred CCchhhHHHHH
Q psy665 142 PISLLGILGIL 152 (180)
Q Consensus 142 ~lt~~~~iG~~ 152 (180)
.++-..++|++
T Consensus 60 ~fs~~~i~~Ii 70 (122)
T PF01102_consen 60 RFSEPAIIGII 70 (122)
T ss_dssp SSS-TCHHHHH
T ss_pred Cccccceeehh
Confidence 33333444433
No 164
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=23.98 E-value=47 Score=21.01 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=24.9
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHH
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVL 44 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l 44 (180)
.-+++.+|.+++..-.+.|++|.++.+.+
T Consensus 28 Gls~~~LgwIL~gvf~liw~ly~~~~~~l 56 (67)
T PLN00082 28 GVSNGKLTWILVGVTALIWALYFSYSSTL 56 (67)
T ss_pred cccCchhhhHHHHHHHHHHHHHhheeccc
Confidence 45788999999999999999999876664
No 165
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.89 E-value=76 Score=23.62 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=4.9
Q ss_pred HHHHHhhhhh
Q psy665 162 AYCKLRKASL 171 (180)
Q Consensus 162 ~~~k~~~k~~ 171 (180)
.|..+||||+
T Consensus 50 ~lcssRKkKa 59 (189)
T PF05568_consen 50 YLCSSRKKKA 59 (189)
T ss_pred HHHhhhhHHH
Confidence 3455555544
No 166
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.62 E-value=67 Score=26.74 Aligned_cols=12 Identities=42% Similarity=0.376 Sum_probs=4.7
Q ss_pred HHHHhhhhhhhc
Q psy665 163 YCKLRKASLKKK 174 (180)
Q Consensus 163 ~~k~~~k~~~~~ 174 (180)
|+-||+||-|||
T Consensus 279 LRYRRKKKmkKK 290 (299)
T PF02009_consen 279 LRYRRKKKMKKK 290 (299)
T ss_pred HHHHHHhhhhHH
Confidence 333333443443
No 167
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=22.67 E-value=1.7e+02 Score=18.17 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy665 145 LLGILGILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 145 ~~~~iG~~lv~~Gv~~~~~~k~~~k~ 170 (180)
|....|+.+.+.++......|+|-|.
T Consensus 3 WiS~~~iglMfisv~~i~~sR~Klk~ 28 (58)
T PF10966_consen 3 WISFGAIGLMFISVILIYFSRYKLKG 28 (58)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45567888888888887777666554
No 168
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.34 E-value=29 Score=28.83 Aligned_cols=20 Identities=5% Similarity=-0.154 Sum_probs=0.0
Q ss_pred HHHHhhCCCChhhHHHHhHH
Q psy665 42 GVLFESYKVTSLQMMFGTNL 61 (180)
Q Consensus 42 ~~l~~~~~~~~~~~~~y~~~ 61 (180)
-.++++|+.+.|++..+.-+
T Consensus 126 m~lLr~~GAs~WtiLaFcLA 145 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLA 145 (381)
T ss_dssp --------------------
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 33777788888887765433
No 169
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=22.17 E-value=54 Score=23.42 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=26.4
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLF 45 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~ 45 (180)
.-+++.+|.+++-.-.+.|++|.++++.+-
T Consensus 89 Glsn~~LgwIL~gVf~liw~ly~~~~~~l~ 118 (128)
T PLN00077 89 GLSNNLLGWILLGVFGLIWSLYTTYTSDLP 118 (128)
T ss_pred cccCchhhHHHHhHHHHHHHHHhheecccC
Confidence 457889999999999999999999888763
No 170
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=21.99 E-value=2.5e+02 Score=19.94 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=16.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHH
Q psy665 141 HPISLLGILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 141 ~~lt~~~~iG~~lv~~Gv~~~~~~k~ 166 (180)
++....+|.-..++++++..+-+.++
T Consensus 64 ~~~~A~nwavgsF~l~s~~~we~Cr~ 89 (118)
T PF12597_consen 64 NPRKAANWAVGSFFLGSLGSWEYCRY 89 (118)
T ss_pred CCccchhhhhHHHHHHHHHHHHHHHH
Confidence 56666677766777777666665543
No 171
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.90 E-value=2.1e+02 Score=18.51 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHhhhhhHHHH-HHHHhhC
Q psy665 20 TLSGVILLALYLSCDSFTSNWQ-GVLFESY 48 (180)
Q Consensus 20 ~~~G~~l~l~s~~~~a~~~~~~-~~l~~~~ 48 (180)
.+++++++.++++...+.+.+- +|.++++
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k~ 32 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKKQ 32 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766666553 4455543
No 172
>KOG2533|consensus
Probab=21.69 E-value=5.8e+02 Score=22.75 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=17.3
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHhCCCCchh
Q psy665 114 KFGAIVFTIIMTVRQGLAILLSCIIYAHPISLL 146 (180)
Q Consensus 114 ~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~ 146 (180)
+..+++++.....---..-+.+-..|....+|+
T Consensus 399 ~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~ 431 (495)
T KOG2533|consen 399 NTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR 431 (495)
T ss_pred hHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence 334444444444444455555666677666665
No 173
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=21.66 E-value=1.4e+02 Score=19.87 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q psy665 145 LLGILGILMVLMAVLLQAYCKLR 167 (180)
Q Consensus 145 ~~~~iG~~lv~~Gv~~~~~~k~~ 167 (180)
+++++|..+++.|..+..+.-+.
T Consensus 1 ~~~~~G~~l~~~g~~l~~~~~~~ 23 (106)
T PF04191_consen 1 WRFVLGLLLILAGIALAIWAFKA 23 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999888876443
No 174
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=21.53 E-value=3e+02 Score=19.35 Aligned_cols=51 Identities=16% Similarity=0.351 Sum_probs=24.4
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHHHHHHHH
Q psy665 113 YKFGAIVFTIIMTVRQGLAILLSCIIYA-HPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 113 ~~~gal~~ai~~~lr~v~sillsv~~fg-~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
++.+-....++...--....+.--+..| -|.+...++...+++..+++..|
T Consensus 67 e~~s~~~~~iiHf~~~~~~~~~~~~~~gW~~~~~~~~~~~~~~fi~IYliIw 118 (136)
T PF11457_consen 67 ERWSLLKQTIIHFIITYAIFLILAYLLGWFPLSVISLLIFILIFIIIYLIIW 118 (136)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5555444444444433333333333333 22333356666666666666665
No 175
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=21.36 E-value=4.8e+02 Score=21.69 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCCccHHHHHHHHHHHHhhhhhHHHHHHHHhhC--CCChhhHHHHhHHHHHHHHHHHHHHhC
Q psy665 16 GKTTTLSGVILLALYLSCDSFTSNWQGVLFESY--KVTSLQMMFGTNLFSCLFTAVSLLQQG 75 (180)
Q Consensus 16 ~~~~~~~G~~l~l~s~~~~a~~~~~~~~l~~~~--~~~~~~~~~y~~~~~~i~~~~~~~~~g 75 (180)
+.+...+|...+..+.++.-+|...--.+.++. +.+.+++|++.+.+-......-.+.+|
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG 90 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITG 90 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 556889999999999999999887776666543 468999999998887777665545444
No 176
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=21.33 E-value=1.1e+02 Score=18.02 Aligned_cols=19 Identities=21% Similarity=0.355 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy665 150 GILMVLMAVLLQAYCKLRK 168 (180)
Q Consensus 150 G~~lv~~Gv~~~~~~k~~~ 168 (180)
=+..++.|+.+|...++++
T Consensus 26 PaLa~fi~lt~yal~r~~~ 44 (46)
T PF11431_consen 26 PALAVFIGLTIYALWRRRR 44 (46)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3566777887776655443
No 177
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=21.08 E-value=3.8e+02 Score=20.33 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=10.8
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHH
Q psy665 110 FTIYKFGAIVFTIIMTVRQGLAILLS 135 (180)
Q Consensus 110 ~~i~~~gal~~ai~~~lr~v~sills 135 (180)
...++... .+..+..+.+...++.
T Consensus 133 ~~~~~~~~--~~~~~~~~~~~~~~~~ 156 (273)
T PF01943_consen 133 QGLQRFKY--IAISNIISSLLSLLLI 156 (273)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 44444443 3444444555544333
No 178
>KOG3012|consensus
Probab=20.84 E-value=4.5e+02 Score=21.16 Aligned_cols=17 Identities=0% Similarity=0.030 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy665 148 ILGILMVLMAVLLQAYC 164 (180)
Q Consensus 148 ~iG~~lv~~Gv~~~~~~ 164 (180)
.+|..++++..++..-.
T Consensus 122 f~~vG~iiAT~~wfi~N 138 (259)
T KOG3012|consen 122 FIIVGVIIATLFWFISN 138 (259)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666676676665443
No 179
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=20.53 E-value=1.2e+02 Score=24.64 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q psy665 147 GILGILMVLMAVLLQAYCKLRKA 169 (180)
Q Consensus 147 ~~iG~~lv~~Gv~~~~~~k~~~k 169 (180)
..+|..+++.|+.+..-.+.+.+
T Consensus 112 ~~v~~~Li~~g~lL~~~~~~~~~ 134 (259)
T PF02673_consen 112 LVVAIALIITGLLLWLADRLKRK 134 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 36899999999988876655544
No 180
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.40 E-value=1.1e+02 Score=22.22 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=9.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q psy665 144 SLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 144 t~~~~iG~~lv~~Gv~~~~~~k 165 (180)
.++-.++.+++..+..++.+.+
T Consensus 22 GWwll~~lll~~~~~~~~~~~r 43 (146)
T PF14316_consen 22 GWWLLLALLLLLLILLLWRLWR 43 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 181
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=20.25 E-value=4.9e+02 Score=21.37 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Q psy665 145 LLGILGILMVLMAVLLQAYCKLRKA 169 (180)
Q Consensus 145 ~~~~iG~~lv~~Gv~~~~~~k~~~k 169 (180)
|..+.+.++.+++-......+++..
T Consensus 266 w~y~~~~I~l~Gae~~a~~~~~~~~ 290 (303)
T COG1295 266 WLYISALIILLGAELNATLSEYKGP 290 (303)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 3446677777777777777666543
No 182
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=20.20 E-value=4e+02 Score=20.30 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHhhCC--C-ChhhHHHHhHHHHHHHHH-HHHHHh
Q psy665 42 GVLFESYK--V-TSLQMMFGTNLFSCLFTA-VSLLQQ 74 (180)
Q Consensus 42 ~~l~~~~~--~-~~~~~~~y~~~~~~i~~~-~~~~~~ 74 (180)
|.+++++. . ..-+..||.|. .+... |..++.
T Consensus 3 e~LL~~fs~nvStk~~alfY~nA--~ivS~vPi~LF~ 37 (170)
T PF07074_consen 3 ELLLQDFSRNVSTKSSALFYGNA--LIVSAVPIWLFW 37 (170)
T ss_pred hHHHHHhhhhhccccceehhhHH--HHHHHHHHHHHH
Confidence 44555542 1 22467788774 44444 555533
No 183
>PF14163 SieB: Superinfection exclusion protein B
Probab=20.16 E-value=90 Score=22.78 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHH
Q psy665 145 LLGILGILMVLMAVLL 160 (180)
Q Consensus 145 ~~~~iG~~lv~~Gv~~ 160 (180)
...|+|.+++++..++
T Consensus 32 y~~~i~~~fl~s~s~l 47 (151)
T PF14163_consen 32 YQPWIGLIFLFSVSYL 47 (151)
T ss_pred cchHHHHHHHHHHHHH
Confidence 4567777666655443
Done!