Query psy665
Match_columns 180
No_of_seqs 141 out of 935
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 23:36:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 2.2E-09 7.4E-14 78.0 6.4 68 98-165 37-105 (137)
2 3b5d_A Multidrug transporter E 98.6 1.9E-07 6.5E-12 65.1 8.9 66 98-163 37-103 (110)
3 2jwa_A Receptor tyrosine-prote 78.6 1.2 4.2E-05 25.3 2.0 19 154-172 25-43 (44)
4 3l1l_A Arginine/agmatine antip 71.1 3.4 0.00012 33.9 3.8 28 146-173 409-436 (445)
5 2rdd_B UPF0092 membrane protei 67.6 6.5 0.00022 21.1 3.2 10 153-162 10-19 (37)
6 3zux_A Transporter, ASBTNM; tr 58.0 70 0.0024 25.5 12.3 62 118-179 260-325 (332)
7 2knc_B Integrin beta-3; transm 38.9 24 0.00081 22.3 2.7 8 142-149 7-14 (79)
8 2jo1_A Phospholemman; FXYD1, N 37.5 55 0.0019 20.2 4.1 19 148-166 22-40 (72)
9 2jp3_A FXYD domain-containing 31.6 44 0.0015 20.5 2.9 17 149-165 24-40 (67)
10 3aqp_A Probable secdf protein- 29.1 3.1E+02 0.011 24.4 10.6 40 118-158 594-633 (741)
11 4f4l_A ION transport protein; 23.4 9.6 0.00033 25.6 -1.3 22 156-177 90-111 (112)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.91 E-value=2.2e-09 Score=77.95 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHH-HHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAIVFTII-MTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCK 165 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal~~ai~-~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~k 165 (180)
.++..++.+++.+++++.++..+.++ +.+.|++++++|+++|||++++.+++|+++++.|++.....+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35677788889999999999999888 899999999999999999999999999999999999887643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.63 E-value=1.9e-07 Score=65.10 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHH-HHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Q psy665 98 SISSAAGQLFVFFTIYKFGAIVFTII-MTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAY 163 (180)
Q Consensus 98 ~~~~~~g~~~~~~~i~~~gal~~ai~-~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~~~ 163 (180)
.++..++.++..+++|+.+...+.++ ..+.++.+.++|+++|||++|+.+++|+++++.|+.....
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34566777888899999999999888 8999999999999999999999999999999999988754
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.61 E-value=1.2 Score=25.26 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy665 154 VLMAVLLQAYCKLRKASLK 172 (180)
Q Consensus 154 v~~Gv~~~~~~k~~~k~~~ 172 (180)
+++|+.+..|.|+|+.++|
T Consensus 25 vi~~l~~~~~~RRR~~~~k 43 (44)
T 2jwa_A 25 VVLGVVFGILIKRRQQKIR 43 (44)
T ss_dssp HHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHhheehhhhhcc
Confidence 3444444555555554443
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=71.12 E-value=3.4 Score=33.89 Aligned_cols=28 Identities=7% Similarity=-0.053 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy665 146 LGILGILMVLMAVLLQAYCKLRKASLKK 173 (180)
Q Consensus 146 ~~~iG~~lv~~Gv~~~~~~k~~~k~~~~ 173 (180)
..+.|..+++.|+.+|.+.++|++++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHKNPY 436 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence 4566888888899888877666554444
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=67.61 E-value=6.5 Score=21.13 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy665 153 MVLMAVLLQA 162 (180)
Q Consensus 153 lv~~Gv~~~~ 162 (180)
+++.++++..
T Consensus 10 v~~~~ifYFl 19 (37)
T 2rdd_B 10 VVFGLIFYFM 19 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 6
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=58.00 E-value=70 Score=25.53 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhCCCCc---hhhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccC
Q psy665 118 IVFTIIMTVRQG-LAILLSCIIYAHPIS---LLGILGILMVLMAVLLQAYCKLRKASLKKKLNQAE 179 (180)
Q Consensus 118 l~~ai~~~lr~v-~sillsv~~fg~~lt---~~~~iG~~lv~~Gv~~~~~~k~~~k~~~~~~~~~~ 179 (180)
.+.+.-.-.|+. .++.++...|++++. |.-+.+..-.+.|..+..+.++|++++++++||+|
T Consensus 260 ~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~~~~~~~~~~~ 325 (332)
T 3zux_A 260 KALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKPLDRAG 325 (332)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCchhhcc
Confidence 344443344554 666666778864321 22223333334455555555555555566666554
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.88 E-value=24 Score=22.34 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.1
Q ss_pred CCchhhHH
Q psy665 142 PISLLGIL 149 (180)
Q Consensus 142 ~lt~~~~i 149 (180)
+++...++
T Consensus 7 ~~n~~~Iv 14 (79)
T 2knc_B 7 GPDILVVL 14 (79)
T ss_dssp SSCSHHHH
T ss_pred CCCchhhH
Confidence 33444333
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=37.53 E-value=55 Score=20.24 Aligned_cols=19 Identities=5% Similarity=0.317 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy665 148 ILGILMVLMAVLLQAYCKL 166 (180)
Q Consensus 148 ~iG~~lv~~Gv~~~~~~k~ 166 (180)
++++++.+.|+.+....|=
T Consensus 22 ifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3445555666666655543
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=31.56 E-value=44 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy665 149 LGILMVLMAVLLQAYCK 165 (180)
Q Consensus 149 iG~~lv~~Gv~~~~~~k 165 (180)
+++++.+.|+.+....|
T Consensus 24 fA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 24 FGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHHcCc
Confidence 44455556665555443
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=29.11 E-value=3.1e+02 Score=24.42 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q psy665 118 IVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAV 158 (180)
Q Consensus 118 l~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv 158 (180)
...+++...-.+...+....++|.+++...++|..++ .|+
T Consensus 594 ~l~~l~~l~~~~~~~~g~l~l~g~~l~~~~i~~~l~l-iGi 633 (741)
T 3aqp_A 594 GVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTI-VGY 633 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH-HHH
Confidence 3444455555566666666789999999998887764 444
No 11
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=23.36 E-value=9.6 Score=25.61 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHhhhhhhhccCc
Q psy665 156 MAVLLQAYCKLRKASLKKKLNQ 177 (180)
Q Consensus 156 ~Gv~~~~~~k~~~k~~~~~~~~ 177 (180)
.|+.+..+.+.+++++++|++|
T Consensus 90 iaVi~~~f~~~~~~~~~~~~~~ 111 (112)
T 4f4l_A 90 IGIIVDAMAITKEQEEEAKTGH 111 (112)
T ss_dssp TTTC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3555566666666555555544
Done!