Query psy665
Match_columns 180
No_of_seqs 141 out of 935
Neff 8.2
Searched_HMMs 13730
Date Fri Aug 16 23:36:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy665.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/665hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 58.2 28 0.002 24.7 8.9 7 171-177 409-415 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 47.3 47 0.0034 24.1 18.2 20 154-173 421-440 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 43.1 47 0.0034 23.0 10.6 32 130-161 96-127 (222)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 42.1 40 0.0029 22.9 6.8 49 113-161 61-109 (199)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 19.5 43 0.0031 20.2 3.0 23 148-170 36-58 (100)
6 d1y5ic1 f.21.3.1 (C:1-225) Res 17.9 37 0.0027 23.7 2.7 30 147-176 94-123 (225)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 13.0 68 0.005 14.3 1.9 18 149-166 3-21 (27)
8 d2nr9a1 f.51.1.1 (A:4-192) Glp 12.4 1.2E+02 0.0084 19.9 4.1 13 157-169 173-185 (189)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.1 84 0.0061 19.0 2.7 21 149-169 43-63 (107)
10 d1kqfb2 f.23.22.1 (B:246-290) 10.0 1.1E+02 0.0078 15.8 2.4 30 135-164 4-33 (45)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=58.15 E-value=28 Score=24.69 Aligned_cols=7 Identities=29% Similarity=0.866 Sum_probs=3.1
Q ss_pred hhhccCc
Q psy665 171 LKKKLNQ 177 (180)
Q Consensus 171 ~~~~~~~ 177 (180)
+|||.||
T Consensus 409 ~r~~~~e 415 (417)
T d1pv7a_ 409 LRRQVNE 415 (417)
T ss_dssp HHHHHHH
T ss_pred hHhhhcc
Confidence 3444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=47.28 E-value=47 Score=24.11 Aligned_cols=20 Identities=20% Similarity=0.183 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q psy665 154 VLMAVLLQAYCKLRKASLKK 173 (180)
Q Consensus 154 v~~Gv~~~~~~k~~~k~~~~ 173 (180)
+++.+.......+++||++|
T Consensus 421 ~~~~~~~~~~~~~~~~r~~~ 440 (447)
T d1pw4a_ 421 ILAVILLIVVMIGEKRRHEQ 440 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhccccHHH
Confidence 33334444343333333333
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=43.09 E-value=47 Score=22.96 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 130 LAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 130 ~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
...+.+..+++.+++....+|..+.++...-+
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~ 127 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLSAKN 127 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhhhhH
Confidence 34556677889999999999988876655433
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=42.11 E-value=40 Score=22.94 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=30.6
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHH
Q psy665 113 YKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQ 161 (180)
Q Consensus 113 ~~~gal~~ai~~~lr~v~sillsv~~fg~~lt~~~~iG~~lv~~Gv~~~ 161 (180)
+..-+.........--+........++|.+++.....+..+.++...-+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 3333333444444444555555567889999998888888877766544
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=19.48 E-value=43 Score=20.17 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy665 148 ILGILMVLMAVLLQAYCKLRKAS 170 (180)
Q Consensus 148 ~iG~~lv~~Gv~~~~~~k~~~k~ 170 (180)
..++.+++.+...+...|.|.||
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhccC
Confidence 34455556677777666655544
No 6
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=17.86 E-value=37 Score=23.66 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q psy665 147 GILGILMVLMAVLLQAYCKLRKASLKKKLN 176 (180)
Q Consensus 147 ~~iG~~lv~~Gv~~~~~~k~~~k~~~~~~~ 176 (180)
..++.++++.|+....+++...|+.|..++
T Consensus 94 g~i~g~l~liG~~~ll~RR~~~~~~r~~~~ 123 (225)
T d1y5ic1 94 GGASGVLCLIGGVLLLKRRLFSPRVRATTT 123 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccCc
Confidence 355667777888877777666555444433
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.01 E-value=68 Score=14.33 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=8.9
Q ss_pred HHHHHH-HHHHHHHHHHHH
Q psy665 149 LGILMV-LMAVLLQAYCKL 166 (180)
Q Consensus 149 iG~~lv-~~Gv~~~~~~k~ 166 (180)
+|.+++ ++|+++..+.+.
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 454444 445555555443
No 8
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=12.45 E-value=1.2e+02 Score=19.94 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhh
Q psy665 157 AVLLQAYCKLRKA 169 (180)
Q Consensus 157 Gv~~~~~~k~~~k 169 (180)
|..+..+.++++|
T Consensus 173 G~~~g~~~~~~~k 185 (189)
T d2nr9a1 173 GLIWGFIDSKLRK 185 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccc
Confidence 6555544443333
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.09 E-value=84 Score=19.03 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy665 149 LGILMVLMAVLLQAYCKLRKA 169 (180)
Q Consensus 149 iG~~lv~~Gv~~~~~~k~~~k 169 (180)
.++.+.+.|++.+..-|.|++
T Consensus 43 ~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHhhhhhcc
Confidence 344445566777766665544
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=9.96 E-value=1.1e+02 Score=15.80 Aligned_cols=30 Identities=10% Similarity=0.260 Sum_probs=21.2
Q ss_pred HHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Q psy665 135 SCIIYAHPISLLGILGILMVLMAVLLQAYC 164 (180)
Q Consensus 135 sv~~fg~~lt~~~~iG~~lv~~Gv~~~~~~ 164 (180)
++-+++..+-|...+|+...+++.++-...
T Consensus 4 ~V~lWKgv~Kpl~~~~~~~~~~~~~fHYv~ 33 (45)
T d1kqfb2 4 SVSLWKGALKPLAAAGFIATFAGLIFHYIG 33 (45)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHhhhe
Confidence 455677777788888888887777665443
Done!