RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy665
         (180 letters)



>gnl|CDD|219846 pfam08449, UAA, UAA transporter family.  This family includes
           transporters with a specificity for
           UDP-N-acetylglucosamine.
          Length = 303

 Score =  128 bits (323), Expect = 1e-36
 Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 4/171 (2%)

Query: 3   LFMLSSLDTSDKVGKTTT--LSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTN 60
           +F L+S   S     TT     G+ LL   L  D+ T N Q  L++ Y   S +MMF ++
Sbjct: 133 IFTLASAKDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKEMMFYSH 192

Query: 61  LFSCLFTAVSLLQQGG--FYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAI 118
           L S  F  + LL       + +  F L+ PS     +L S++   GQ FVF+ I +FGA+
Sbjct: 193 LLSLPFFLLGLLDIRTGLLFSAESFCLRHPSVLFYLLLNSLTQYVGQFFVFYLISEFGAL 252

Query: 119 VFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKA 169
             T++ T+R+ +++LLS +++ +P++L   LG L+V + + L AY K +KA
Sbjct: 253 TVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAYLKKKKA 303


>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family.  This family
           includes transporters with a specificity for triose
           phosphate.
          Length = 149

 Score = 34.1 bits (79), Expect = 0.016
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 46  ESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGF-----YQSLHFMLQFPSFTLDCILLSIS 100
           +  K+  L++++  +  + +     LL   GF            L+   + L  +L  + 
Sbjct: 27  KGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFKLGKFILKFFGDLKTSRYVLLLLLSGVL 86

Query: 101 SAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAVLL 160
           +    L  F  + +   +  ++  TV++ + I+LS II+  P++ L ILG+ + ++ V+L
Sbjct: 87  AFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDPVTFLNILGLAIAILGVVL 146


>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 491

 Score = 30.7 bits (69), Expect = 0.41
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 14/149 (9%)

Query: 21  LSGVILLALYLSC-DSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGGFYQ 79
           L+ ++L  L +      ++     L  + +++ + +  G N+   LF  ++   +   + 
Sbjct: 8   LASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITIGLNVILLLFFLIANALKTLLFG 67

Query: 80  SL------HFMLQFPSFTLDCILLSIS---SAAGQLFVFFTIYKFGAIVFTIIMTVRQGL 130
           SL          Q    TL  ILL+IS    A    F         A VF  I++ R   
Sbjct: 68  SLRTFELELLYEQLW-ITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILSFRTER 126

Query: 131 AILLSCIIYAHPISLLGILGILMVLMAVL 159
             + S     H  S          L+++L
Sbjct: 127 LQIQSTDQRFHIFSR---FSCAYFLLSIL 152


>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560.  This
           family of proteins has no known function.
          Length = 805

 Score = 29.1 bits (65), Expect = 1.5
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 5/31 (16%)

Query: 141 HPISLLGILG----ILMVLMAVLLQAYCKLR 167
           H + LL ILG    I+++L+ +LL  YC+ +
Sbjct: 272 HTVFLLAILGGLALIVLILLCLLL-YYCRRK 301


>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase
           subunit GalU; Provisional.
          Length = 302

 Score = 27.6 bits (61), Expect = 3.6
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 123 IMTVRQGLAILLS-CIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASLKKKLNQAEV 180
           IM VRQGLA  L   ++ AHP  ++G   + ++L  V+L  Y      S   + N AE+
Sbjct: 104 IMQVRQGLAKGLGHAVLCAHP--VVGDEPVAVILPDVILDEY-----ESDLSQDNLAEM 155


>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 436

 Score = 27.7 bits (62), Expect = 4.3
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 88  PSFTLDCILLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLG 147
           PS  L  ILL +    G L + F +   G  V  II       AILL    Y      + 
Sbjct: 234 PSVAL--ILLLL----GFLGLIFELLSPGFGVPGIIG------AILLLLGFYGLLFLGIN 281

Query: 148 ILGILMVLMAVLL 160
             G+L++++  +L
Sbjct: 282 WAGLLLIILGAIL 294


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.332    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,762,759
Number of extensions: 819537
Number of successful extensions: 1551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1530
Number of HSP's successfully gapped: 176
Length of query: 180
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 89
Effective length of database: 6,901,388
Effective search space: 614223532
Effective search space used: 614223532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (25.3 bits)