RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy665
         (180 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 67/184 (36%)

Query: 18  TTTLSGVILLALYLS-CDSFTSNWQGVLFESYKVTSLQMMFGTNLFSCLFTAVSLLQQGG 76
            T  S  ++ A+ ++  DS    W     ES+             F  +  A+++L    
Sbjct: 270 ATGHSQGLVTAVAIAETDS----W-----ESF-------------FVSVRKAITVL---- 303

Query: 77  FYQSLHFMLQFPSFTLDCILLSISSAAGQ------LFVFFTIYKFG---AIVFTIIMTVR 127
           F+  +     +P+ +L   +L  S    +      L +             V   +    
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS------NLTQEQVQDYVNKTN 357

Query: 128 QGL------AILL-----SCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASLKKKLN 176
             L       I L     + ++   P SL G            L     LRKA     L+
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYG------------LNLT--LRKAKAPSGLD 403

Query: 177 QAEV 180
           Q+ +
Sbjct: 404 QSRI 407


>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
           PSI-2, protein structure initiative; 2.00A {Nitrosospira
           multiformis atcc 25196} PDB: 3k2q_A
          Length = 419

 Score = 26.2 bits (58), Expect = 7.3
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 129 GLAILLSCIIYAHPISLLGILGILMVLMAVLLQAYCKLRKASLKKKLNQAEV 180
           G  I   C  Y  P+    I G         L  Y +L+  ++ KKL+   +
Sbjct: 372 GFGITDLCREYLAPL----IEGEDYPPYKDGLPDYVRLKNVAVPKKLSGFTL 419


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,452,000
Number of extensions: 130399
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 14
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 54 (24.8 bits)