RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy665
         (180 letters)



>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3
           (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 26.3 bits (58), Expect = 0.92
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 96  LLSISSAAGQLFVFFTIYKFGAIVFTIIMTVRQGLAILLSCIIYAHPISLLGILG 150
            LS  S  G         + G +++   +   + +   + CI      + +G++G
Sbjct: 33  SLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIG 87


>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 25.5 bits (55), Expect = 4.1
 Identities = 21/158 (13%), Positives = 51/158 (32%), Gaps = 1/158 (0%)

Query: 1   MLLFMLSSLDTSDKVGKTTTLSGVILLALYLSCDSFTSNWQGVLFESYKVTSLQMMFGTN 60
            L   +      + + K +  + ++ L       S          E +   ++  +F   
Sbjct: 143 FLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILA 202

Query: 61  LFSCLFTAVSLLQQGGFYQSLHFMLQFPSFTLDCILLSISSAAGQLFVFFTIYKFGAIVF 120
           +F  +   +     G     L+F+   P F          +A GQ+F   ++     I +
Sbjct: 203 VFLVIRVFLLETPNGTAADGLNFL-WTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITY 261

Query: 121 TIIMTVRQGLAILLSCIIYAHPISLLGILGILMVLMAV 158
              +   Q + +        +  + + + G + +  AV
Sbjct: 262 ASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAV 299


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 581,809
Number of extensions: 23659
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 9
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.8 bits)