BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6650
(156 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST]
gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST]
Length = 1056
Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats.
Identities = 111/137 (81%), Positives = 125/137 (91%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+KH VHWFRKGLR+HDNP+LREGL+G TFRCVFI+DPWFAGSSNVGINKWRFLLQCL+D
Sbjct: 98 DKHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDPWFAGSSNVGINKWRFLLQCLDD 157
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD NLRKLNSRLFVIRGQPAD LPKLFKEW TTCLTFEEDPEPFG+VRD NI +C+EL
Sbjct: 158 LDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKELG 217
Query: 134 IEVIARVSHTLYDLDQL 150
IEVI+ SHTLY+L+++
Sbjct: 218 IEVISAASHTLYNLERI 234
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
Length = 961
Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 111/137 (81%), Positives = 125/137 (91%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+KH VHWFRKGLR+HDNP+LREGL+G TFRCVFI+DPWFAGSSNVGINKWRFLLQCL+D
Sbjct: 3 DKHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDPWFAGSSNVGINKWRFLLQCLDD 62
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD NLRKLNSRLFVIRGQPAD LPKLFKEW TTCLTFEEDPEPFG+VRD NI +C+EL
Sbjct: 63 LDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKELG 122
Query: 134 IEVIARVSHTLYDLDQL 150
IEVI+ SHTLY+L+++
Sbjct: 123 IEVISAASHTLYNLERI 139
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
Length = 1043
Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 109/137 (79%), Positives = 126/137 (91%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+KH VHWFRKGLR+HDNP+LREG++G T+FRCVF++DPWFAGSSNVGINKWRFLLQCL+D
Sbjct: 105 DKHTVHWFRKGLRLHDNPALREGVRGATSFRCVFVIDPWFAGSSNVGINKWRFLLQCLDD 164
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD NLRKLNSRLFVIRGQPAD LPKLFKEW TTCLTFEEDPEPFG+VRD NI +C+EL
Sbjct: 165 LDRNLRKLNSRLFVIRGQPADALPKLFKEWSTTCLTFEEDPEPFGRVRDHNISEMCKELG 224
Query: 134 IEVIARVSHTLYDLDQL 150
IEVI+ SHTLY+L+++
Sbjct: 225 IEVISAASHTLYNLERI 241
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
Length = 828
Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 111/143 (77%), Positives = 126/143 (88%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+KH VHWFRKGLR+HDNP+LREGLK + RCVF++DPWFAGSSNVGINKWRFLLQCLED
Sbjct: 47 KKHTVHWFRKGLRLHDNPALREGLKDAASLRCVFVIDPWFAGSSNVGINKWRFLLQCLED 106
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD NLR+LNSRLFVIRGQPAD LPKLFKEW TTCLTFEEDPEPFGKVRD NI +C+ELN
Sbjct: 107 LDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKELN 166
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
I+VI+ VSHTLY L+++ + G
Sbjct: 167 IDVISAVSHTLYKLERIIEKNNG 189
>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 789
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 111/143 (77%), Positives = 126/143 (88%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+KH VHWFRKGLR+HDNP+LREGLK + RCVF++DPWFAGSSNVGINKWRFLLQCLED
Sbjct: 49 KKHTVHWFRKGLRLHDNPALREGLKDAASLRCVFVIDPWFAGSSNVGINKWRFLLQCLED 108
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD NLR+LNSRLFVIRGQPAD LPKLFKEW TTCLTFEEDPEPFGKVRD NI +C+ELN
Sbjct: 109 LDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKELN 168
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
I+VI+ VSHTLY L+++ + G
Sbjct: 169 IDVISAVSHTLYKLERIIEKNNG 191
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae]
Length = 586
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 116/144 (80%), Positives = 126/144 (87%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
+ KH VHWFRKGLR+HDNPSLREGLK TFRCVFILDPWFAGSSNVGINKWRFLLQCLE
Sbjct: 6 SPKHTVHWFRKGLRLHDNPSLREGLKCAKTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 65
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DLD +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRDQNIM +C+EL
Sbjct: 66 DLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDQNIMAMCKEL 125
Query: 133 NIEVIARVSHTLYDLDQLKPDSRG 156
I VI RVSHTLY L+ + ++ G
Sbjct: 126 GISVITRVSHTLYRLENIIENNGG 149
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus]
Length = 742
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 111/137 (81%), Positives = 122/137 (89%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
EKH VHWFRKGLR+HDNP+LREGL TTFRCVFI+DPWFA SSNVGINKWRFLLQCLED
Sbjct: 28 EKHTVHWFRKGLRLHDNPALREGLVDATTFRCVFIIDPWFASSSNVGINKWRFLLQCLED 87
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD NLRKLNSRLFV+RGQPAD LPKLF+EW TT LTFEEDPEP+G+VRD NIMT CRE+
Sbjct: 88 LDKNLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMTKCREVG 147
Query: 134 IEVIARVSHTLYDLDQL 150
I+V +RVSHTLY LD +
Sbjct: 148 IQVTSRVSHTLYKLDDI 164
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris]
Length = 574
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 116/151 (76%), Positives = 128/151 (84%), Gaps = 5/151 (3%)
Query: 5 STPTNPNST-----EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV 59
S+ NP+ T KH VHWFRKGLR+HDNPSLREGL G TTFRCVF+LDPWFAGS+NV
Sbjct: 6 SSEINPDVTVRGEGGKHTVHWFRKGLRLHDNPSLREGLTGATTFRCVFVLDPWFAGSTNV 65
Query: 60 GINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
GINKWRFLLQCLEDLD +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+
Sbjct: 66 GINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGR 125
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
VRD NI LC+EL I V+ +VSHTLY LD++
Sbjct: 126 VRDHNISALCKELGISVVQKVSHTLYKLDEI 156
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens]
gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
Length = 574
Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 116/151 (76%), Positives = 128/151 (84%), Gaps = 5/151 (3%)
Query: 5 STPTNPNST-----EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV 59
S+ NP+ T KH VHWFRKGLR+HDNPSLREGL G TTFRCVF+LDPWFAGS+NV
Sbjct: 6 SSEINPDVTVRGEGGKHTVHWFRKGLRLHDNPSLREGLTGATTFRCVFVLDPWFAGSTNV 65
Query: 60 GINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
GINKWRFLLQCLEDLD +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+
Sbjct: 66 GINKWRFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGR 125
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
VRD NI LC+EL I V+ +VSHTLY LD++
Sbjct: 126 VRDHNISALCKELGISVVQKVSHTLYKLDEI 156
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
Length = 558
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/142 (79%), Positives = 124/142 (87%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSLREGL G +TFRCVF+LDPWFAGS+NVGINKWRFLLQCLEDL
Sbjct: 54 KHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDL 113
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRD NI LC+EL I
Sbjct: 114 DCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELGI 173
Query: 135 EVIARVSHTLYDLDQLKPDSRG 156
V+ RVSHTLY LD++ + G
Sbjct: 174 SVVQRVSHTLYKLDEIIEKNGG 195
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti]
Length = 820
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/133 (82%), Positives = 121/133 (90%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+LREGLK +FRCVF++DPWFAGSSNVGINKWRFLLQCLEDLD N
Sbjct: 47 VHWFRKGLRLHDNPALREGLKDAVSFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDRN 106
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQPAD LPKLFKEW TTCLTFEEDPEPFGKVRD NI +C+EL IEVI
Sbjct: 107 LRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKELGIEVI 166
Query: 138 ARVSHTLYDLDQL 150
+ VSHTLY L+++
Sbjct: 167 SAVSHTLYKLERI 179
>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
Length = 553
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 109/132 (82%), Positives = 124/132 (93%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
EK +VHWFRKGLR+HDNPSL++GLKGC+T+RC+FILDPWFAGSSNV INKWRFLL+ LED
Sbjct: 10 EKQVVHWFRKGLRLHDNPSLKDGLKGCSTYRCIFILDPWFAGSSNVDINKWRFLLESLED 69
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD NLRKLNSRLFVIRGQPA +LPKLFKEW+TTCLTFEEDPEPFG+VRDQNI+T+C++ N
Sbjct: 70 LDQNLRKLNSRLFVIRGQPAGVLPKLFKEWETTCLTFEEDPEPFGRVRDQNIITMCKDFN 129
Query: 134 IEVIARVSHTLY 145
IEVI R SHTLY
Sbjct: 130 IEVITRASHTLY 141
>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
Length = 535
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/137 (81%), Positives = 122/137 (89%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+KHMVHWFR+GLR+HDNPSLREGLKG TFRCVF+LDPWFAGSSNVGINKWRFLLQCLED
Sbjct: 16 DKHMVHWFRRGLRLHDNPSLREGLKGARTFRCVFVLDPWFAGSSNVGINKWRFLLQCLED 75
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG VRD N+ TLC+EL
Sbjct: 76 LDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQELG 135
Query: 134 IEVIARVSHTLYDLDQL 150
I V+ +VSHTLY L +
Sbjct: 136 ISVVQKVSHTLYHLQDI 152
>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
Length = 788
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/146 (76%), Positives = 124/146 (84%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW 64
S PT KH VHWFRKGLR+HDNP+LREGL TTFRCVFI+DPWFA SSNVGINKW
Sbjct: 24 SAPTPRRPHTKHTVHWFRKGLRLHDNPALREGLVNATTFRCVFIIDPWFASSSNVGINKW 83
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFLLQCLEDLD +L+KLNSRLFV+RGQPAD LPKLF+EW TT LTFEEDPEP+G+VRD N
Sbjct: 84 RFLLQCLEDLDSSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHN 143
Query: 125 IMTLCRELNIEVIARVSHTLYDLDQL 150
I T CRE+ I VI+RVSHTLY LD++
Sbjct: 144 ITTKCREVGINVISRVSHTLYKLDKI 169
>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
Length = 671
Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/142 (78%), Positives = 124/142 (87%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSL+EGL G +TFRCVF+LDPWFAGS+NVGINKWRFLLQCLEDL
Sbjct: 23 KHTVHWFRKGLRLHDNPSLKEGLAGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDL 82
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRD NI LC+EL I
Sbjct: 83 DCSLRKLNSRLFVIRGQPADALPKLFKEWGTTDLTFEEDPEPFGRVRDHNISALCKELGI 142
Query: 135 EVIARVSHTLYDLDQLKPDSRG 156
V+ RVSHTLY LD++ + G
Sbjct: 143 SVVQRVSHTLYRLDEIIERNSG 164
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata]
Length = 589
Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/142 (78%), Positives = 124/142 (87%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSLREGL G +TFRCVF+LDPWFAGS+NVGINKWRFLLQCLEDL
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDL 80
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRD NI LC+EL I
Sbjct: 81 DCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELGI 140
Query: 135 EVIARVSHTLYDLDQLKPDSRG 156
V+ +VSHTLY LD++ + G
Sbjct: 141 SVVQKVSHTLYKLDEIIEKNGG 162
>gi|380017772|ref|XP_003692819.1| PREDICTED: cryptochrome-1-like [Apis florea]
Length = 571
Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 122/136 (89%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSLREGL G +TFRCVF+LDPWFAGS+N+GINKWRFLLQCLEDL
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNIGINKWRFLLQCLEDL 80
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRD NI LC+EL I
Sbjct: 81 DCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELGI 140
Query: 135 EVIARVSHTLYDLDQL 150
V+ +VSHTLY LD++
Sbjct: 141 SVVQKVSHTLYKLDEI 156
>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
Length = 570
Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 122/136 (89%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSLREGL G +TFRCVF+LDPWFAGS+N+GINKWRFLLQCLEDL
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNIGINKWRFLLQCLEDL 80
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRD NI LC+EL I
Sbjct: 81 DCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKELGI 140
Query: 135 EVIARVSHTLYDLDQL 150
V+ +VSHTLY LD++
Sbjct: 141 SVVQKVSHTLYKLDEI 156
>gi|444245671|gb|AGD94517.1| cryptochrome, partial [Solenopsis invicta]
Length = 573
Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 121/136 (88%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSL+EGL G +TFRCVF+LDPWFAGS+NVGINKWRFLLQCLEDL
Sbjct: 23 KHTVHWFRKGLRLHDNPSLKEGLAGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDL 82
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRD NI LC EL I
Sbjct: 83 DCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCEELGI 142
Query: 135 EVIARVSHTLYDLDQL 150
V+ R+SHTLY LD++
Sbjct: 143 SVVQRISHTLYKLDEI 158
>gi|406507547|gb|AFS34617.1| cryptochrome 2 [Clunio marinus]
Length = 657
Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/143 (77%), Positives = 125/143 (87%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
EKH+VHWFRKGLR+HDNP+LREGLK TTFR VF +DPWFAGSSNVGINKWRFLLQCLED
Sbjct: 11 EKHIVHWFRKGLRLHDNPALREGLKNATTFRAVFFVDPWFAGSSNVGINKWRFLLQCLED 70
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD NLR+LNSRLFVIRGQPA+ LP LFK+W TTCLTFEEDPEPF KVRD NI +C+ELN
Sbjct: 71 LDQNLRRLNSRLFVIRGQPAEKLPMLFKKWNTTCLTFEEDPEPFSKVRDNNITEMCKELN 130
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
IEVI+ VSHTLY L+++ + G
Sbjct: 131 IEVISAVSHTLYKLEKIIEKNNG 153
>gi|333755446|gb|ADN94465.2| cryptochrome 2 [Helicoverpa armigera]
Length = 657
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 121/136 (88%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH+VHWFRKGLR+HDNP+LREGL TFRCVFI+DPWFA SSNVGINKWRFLLQCLEDL
Sbjct: 36 KHIVHWFRKGLRLHDNPALREGLLDAATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDL 95
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFV+RGQPAD LPKLF+EW TT LTFEEDPEP+G+VRD NIM+ CRE+ I
Sbjct: 96 DSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREVGI 155
Query: 135 EVIARVSHTLYDLDQL 150
V +RVSHTLY LDQ+
Sbjct: 156 TVTSRVSHTLYKLDQI 171
>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
Length = 538
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 121/136 (88%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
+EKH VHWFRKGLR+HDNPSLR GL G TFRC+FILDPWFA +SNVGINKWRFLLQCLE
Sbjct: 2 SEKHTVHWFRKGLRLHDNPSLRHGLNGAKTFRCIFILDPWFANASNVGINKWRFLLQCLE 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DLD +L KLNSRLFVIRGQPADILPKL KEW TTCLTFEEDPEPFG+VRDQNIM +CR +
Sbjct: 62 DLDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMCRGM 121
Query: 133 NIEVIARVSHTLYDLD 148
NI VI+ V+HTLY L+
Sbjct: 122 NITVISLVAHTLYKLE 137
>gi|404313305|gb|AFR54427.1| cryptochrome 2 [Mythimna separata]
Length = 757
Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 106/137 (77%), Positives = 123/137 (89%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+KH+VHWFRKGLR+HDNP+L++GL TTFRCVFI+DPWFA SSNVGINKWRFLLQCLED
Sbjct: 21 DKHIVHWFRKGLRLHDNPALKDGLVDATTFRCVFIIDPWFASSSNVGINKWRFLLQCLED 80
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD +LRKLNSRLFV+RGQPAD LPKLF+EW TT L+FEEDPEP+G+VRD NIM+ CRE+
Sbjct: 81 LDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEEDPEPYGRVRDHNIMSKCREVG 140
Query: 134 IEVIARVSHTLYDLDQL 150
I V +RVSHTLY LDQ+
Sbjct: 141 ITVTSRVSHTLYKLDQI 157
>gi|345483304|ref|XP_001606405.2| PREDICTED: cryptochrome-1 [Nasonia vitripennis]
Length = 627
Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 109/143 (76%), Positives = 125/143 (87%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+KH VHWFRKGLR+HDNPSLREGL G +TFRCVF+LDPWFAGS+NV INKWRFLLQCLED
Sbjct: 62 KKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSANVSINKWRFLLQCLED 121
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD +L +LNSRLFVIRGQPAD LPKLF+EW TT LTFEEDPEP+G+VRD+NI TLC+EL
Sbjct: 122 LDRSLHQLNSRLFVIRGQPADALPKLFREWGTTSLTFEEDPEPYGRVRDENITTLCKELG 181
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
I V+ RVSHTLY LD++ + G
Sbjct: 182 ITVVQRVSHTLYKLDEIIEKNGG 204
>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
Length = 625
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 108/139 (77%), Positives = 122/139 (87%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
S KH+VHWFRKGLR+HDNP+L+EGL TFRCVFI+DPWFA SSNVGINKWRFLLQCL
Sbjct: 34 SNGKHIVHWFRKGLRLHDNPALKEGLLDAATFRCVFIIDPWFASSSNVGINKWRFLLQCL 93
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
EDLD +LRKLNSRLFV+RGQPAD LPKLF+EW TT LTFEEDPEP+G+VRD NIM+ CRE
Sbjct: 94 EDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCRE 153
Query: 132 LNIEVIARVSHTLYDLDQL 150
+ I V +RVSHTLY LDQ+
Sbjct: 154 VGITVTSRVSHTLYKLDQI 172
>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
Length = 525
Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 110/142 (77%), Positives = 123/142 (86%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSL+EGL G +TFRCVF+LDPWFAGS+NVGINKWRFLLQCLEDL
Sbjct: 23 KHTVHWFRKGLRLHDNPSLKEGLAGASTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDL 82
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEED EPFG+VRD NI LC+EL I
Sbjct: 83 DCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDSEPFGRVRDHNISALCKELGI 142
Query: 135 EVIARVSHTLYDLDQLKPDSRG 156
V+ +VSHTLY LD++ + G
Sbjct: 143 SVVQKVSHTLYKLDEIIERNNG 164
>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
Length = 506
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/146 (74%), Positives = 125/146 (85%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
++ KH VHWFRKGLR+HDNPSLREG+K TFRCVF++DPWFAGSSNVGINKWRFLLQC
Sbjct: 7 QNSGKHTVHWFRKGLRLHDNPSLREGIKNSVTFRCVFVIDPWFAGSSNVGINKWRFLLQC 66
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
LEDLD +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRD NIM +C+
Sbjct: 67 LEDLDRSLRKLNSRLFVIRGQPADTLPKLFKEWGTTNLTFEEDPEPFGRVRDLNIMAMCK 126
Query: 131 ELNIEVIARVSHTLYDLDQLKPDSRG 156
EL I V+++ SHTLY L+ + + G
Sbjct: 127 ELGISVVSKSSHTLYKLEHIIEKNGG 152
>gi|386762985|gb|AFJ22639.1| cryptochrome 2 [Agrotis ipsilon]
Length = 812
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 105/136 (77%), Positives = 121/136 (88%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH+VHWFRKGLR+HDNP+L++GL TFRCVFI+DPWFA SSNVGINKWRFLLQCLEDL
Sbjct: 60 KHIVHWFRKGLRLHDNPALKDGLVDAATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDL 119
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFV+RGQPAD LPKLF+EW TT L+FEEDPEP+G+VRD NIM+ CRE+ I
Sbjct: 120 DSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEEDPEPYGRVRDHNIMSKCREVGI 179
Query: 135 EVIARVSHTLYDLDQL 150
V +RVSHTLY LDQ+
Sbjct: 180 TVTSRVSHTLYKLDQI 195
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
Length = 730
Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 120/136 (88%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNP+LREG+ TFRCVFI+DPWFA SSNVGINKWRFLLQCLEDL
Sbjct: 33 KHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDL 92
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +L+KLNSRLFV+RGQPAD LPKLF+EW TT LTFEEDPEP+G+VRD NI++ CRE+ I
Sbjct: 93 DKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIISKCREVGI 152
Query: 135 EVIARVSHTLYDLDQL 150
V +RVSHTLY LD++
Sbjct: 153 TVTSRVSHTLYKLDKI 168
>gi|405952216|gb|EKC20054.1| Cleavage stimulation factor 77 kDa subunit [Crassostrea gigas]
Length = 1237
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 100/136 (73%), Positives = 116/136 (85%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH+VHWFRKGLR+HDNPSLRE LKG +++RCV+ILDPWFAGSS VGINKWRFLLQCLEDL
Sbjct: 698 KHVVHWFRKGLRLHDNPSLREALKGSSSYRCVYILDPWFAGSSQVGINKWRFLLQCLEDL 757
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFV+RGQP D+ PK+FKEW T L+FEEDPEPFGK RD I L +E +
Sbjct: 758 DTSLRKLNSRLFVLRGQPTDLFPKIFKEWNITTLSFEEDPEPFGKERDGAIQMLAKEAGV 817
Query: 135 EVIARVSHTLYDLDQL 150
EVI + SHTLYDL ++
Sbjct: 818 EVIVKTSHTLYDLQKI 833
>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
Length = 545
Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 104/143 (72%), Positives = 122/143 (85%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
EKH+VHWFRKGLR+HDNP+L+ GLKG TTFR +FI+DPWFAGSSNVGINKWRFLLQCLED
Sbjct: 6 EKHVVHWFRKGLRLHDNPTLKAGLKGATTFRGIFIIDPWFAGSSNVGINKWRFLLQCLED 65
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD LRKLN RLFV+RGQPA +LP+LFK W TTCLTFE+DPEPFGKVRD NI + RE+
Sbjct: 66 LDTTLRKLNGRLFVVRGQPAHVLPQLFKTWGTTCLTFEKDPEPFGKVRDANITHIAREMG 125
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
I+VI + SHTLY L+++ + G
Sbjct: 126 IQVIIKTSHTLYKLEKIISKNGG 148
>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
Length = 512
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 117/136 (86%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSLREGL TFRC+FILDPWFAG+SNVGINKWRFLLQCL DL
Sbjct: 4 KHTVHWFRKGLRIHDNPSLREGLINAKTFRCIFILDPWFAGASNVGINKWRFLLQCLSDL 63
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +L+KLNSRLFVI+GQPA+ LPKLF++W TT TFEEDPEPFG+VRDQNI +C EL I
Sbjct: 64 DNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSELGI 123
Query: 135 EVIARVSHTLYDLDQL 150
VI R SHTLY LD++
Sbjct: 124 SVITRCSHTLYQLDKI 139
>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
Length = 512
Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/136 (75%), Positives = 117/136 (86%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH VHWFRKGLR+HDNPSLREGL TFRC+FILDPWFAG+SNVGINKWRFLLQCL DL
Sbjct: 4 KHTVHWFRKGLRIHDNPSLREGLINAKTFRCIFILDPWFAGASNVGINKWRFLLQCLSDL 63
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +L+KLNSRLFVI+GQPA+ LPKLF++W TT TFEEDPEPFG+VRDQNI +C E+ I
Sbjct: 64 DNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSEMGI 123
Query: 135 EVIARVSHTLYDLDQL 150
VI R SHTLY LD++
Sbjct: 124 SVITRCSHTLYQLDKI 139
>gi|410994568|gb|AFV96168.1| cryptochrome 2 [Talitrus saltator]
Length = 565
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 96/134 (71%), Positives = 118/134 (88%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH+VHWFR+GLR+HDNP+LR+ + C TFRC++ILDPWFAGSSNVG+NKWRFLLQCLED+
Sbjct: 51 KHVVHWFRRGLRLHDNPALRDAIVNCETFRCIYILDPWFAGSSNVGVNKWRFLLQCLEDV 110
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LR LNSRLFV+RGQPA+ LP+LFKEW TT L+FEEDPEPFG+ RD +I+ + +E+ I
Sbjct: 111 DNSLRNLNSRLFVVRGQPANALPQLFKEWNTTVLSFEEDPEPFGRARDASIIGIAQEMGI 170
Query: 135 EVIARVSHTLYDLD 148
EVI R SHTLY+LD
Sbjct: 171 EVIVRTSHTLYELD 184
>gi|404312667|ref|NP_001017311.2| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
Length = 618
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 113/135 (83%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEWK T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
Length = 616
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 113/135 (83%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEWK T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
Length = 616
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 113/135 (83%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEWK T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|348517126|ref|XP_003446086.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 800
Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 95/133 (71%), Positives = 112/133 (84%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+LRE ++G T RCV+ LDPWFAGSSNVG+N+WRFLLQCLEDLD N
Sbjct: 6 IHWFRKGLRLHDNPALREAVQGAATVRCVYFLDPWFAGSSNVGVNRWRFLLQCLEDLDAN 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQPA++ P+LFKEWK + LTFE D EPFGK RD I L E +EVI
Sbjct: 66 LRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAMEAGVEVI 125
Query: 138 ARVSHTLYDLDQL 150
++SHTLYDLD++
Sbjct: 126 VKISHTLYDLDKI 138
>gi|432959668|ref|XP_004086356.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 653
Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/141 (69%), Positives = 115/141 (81%), Gaps = 5/141 (3%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
PNS +HWFRKGLR+HDNP+LRE ++G T RCV+ LDPWFAGSSNVG+N+WRFLLQ
Sbjct: 3 PNS-----IHWFRKGLRLHDNPALREAVRGAGTVRCVYFLDPWFAGSSNVGVNRWRFLLQ 57
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
CLEDLD NLRKLNSRLFVIRGQPA++ P+LFKEWK + LTFE D EPFGK RD I L
Sbjct: 58 CLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117
Query: 130 RELNIEVIARVSHTLYDLDQL 150
E +EVI ++SHTLYDLD++
Sbjct: 118 MEAGVEVIVKISHTLYDLDKI 138
>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
gi|82104700|sp|Q8QG61.1|CRY1_CHICK RecName: Full=Cryptochrome-1
gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
Length = 621
Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|118572249|sp|Q5IZC5.2|CRY1_ERIRU RecName: Full=Cryptochrome-1
gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
Length = 620
Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
gi|81882230|sp|P97784.1|CRY1_MOUSE RecName: Full=Cryptochrome-1
gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
Length = 606
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|440907719|gb|ELR57829.1| Cryptochrome-1 [Bos grunniens mutus]
Length = 589
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|15824991|gb|AAL09563.1|AF363632_1 cryptochrome 1 [Coturnix japonica]
Length = 168
Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIGRISHTLYDLDKI 138
>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
Length = 621
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLY+LD++
Sbjct: 124 VIVRISHTLYELDKI 138
>gi|82091801|sp|Q6ZZY0.1|CRY1_SYLBO RecName: Full=Cryptochrome-1
gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
Length = 620
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|426374041|ref|XP_004053891.1| PREDICTED: cryptochrome-1 [Gorilla gorilla gorilla]
Length = 583
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
gi|118572250|sp|Q32Q86.1|CRY1_RAT RecName: Full=Cryptochrome-1
gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 588
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
Length = 587
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|417403044|gb|JAA48347.1| Putative deoxyribodipyrimidine photolyase/cryptochrome [Desmodus
rotundus]
Length = 587
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
Length = 587
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|348553110|ref|XP_003462370.1| PREDICTED: cryptochrome-1-like [Cavia porcellus]
Length = 675
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIRGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1 [Sus scrofa]
Length = 588
Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
Length = 589
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLY+LD++
Sbjct: 124 VIVRISHTLYELDKI 138
>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 555
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
gi|74735764|sp|Q16526.1|CRY1_HUMAN RecName: Full=Cryptochrome-1
gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
Length = 586
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
gi|397525251|ref|XP_003832588.1| PREDICTED: cryptochrome-1 [Pan paniscus]
gi|410216796|gb|JAA05617.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410256668|gb|JAA16301.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410295158|gb|JAA26179.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410354849|gb|JAA44028.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
Length = 586
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|73969270|ref|XP_862753.1| PREDICTED: cryptochrome-1 isoform 2 [Canis lupus familiaris]
Length = 587
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|75048080|sp|Q8WP19.1|CRY1_MACFA RecName: Full=Cryptochrome-1
gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
Length = 586
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
gi|402887532|ref|XP_003907145.1| PREDICTED: cryptochrome-1 [Papio anubis]
gi|355564646|gb|EHH21146.1| hypothetical protein EGK_04148 [Macaca mulatta]
gi|355786488|gb|EHH66671.1| hypothetical protein EGM_03711 [Macaca fascicularis]
gi|380809804|gb|AFE76777.1| cryptochrome-1 [Macaca mulatta]
gi|383415927|gb|AFH31177.1| cryptochrome-1 [Macaca mulatta]
gi|384945408|gb|AFI36309.1| cryptochrome-1 [Macaca mulatta]
Length = 586
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|444511893|gb|ELV09967.1| Cryptochrome-1 [Tupaia chinensis]
Length = 463
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
Length = 586
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|410965445|ref|XP_003989258.1| PREDICTED: cryptochrome-1 [Felis catus]
Length = 587
Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
Length = 587
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
Length = 587
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIIRISHTLYDLDKI 138
>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome-1 [Equus caballus]
Length = 587
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
Length = 587
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|403275987|ref|XP_003929699.1| PREDICTED: cryptochrome-1 [Saimiri boliviensis boliviensis]
Length = 586
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|395819912|ref|XP_003783322.1| PREDICTED: cryptochrome-1 [Otolemur garnettii]
Length = 587
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
Length = 587
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|344266586|ref|XP_003405361.1| PREDICTED: cryptochrome-1-like [Loxodonta africana]
Length = 583
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWDITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|387015300|gb|AFJ49769.1| Cryptochrome-1-like [Crotalus adamanteus]
Length = 622
Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/133 (72%), Positives = 111/133 (83%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD N
Sbjct: 6 VHWFRKGLRLHDNPALREVIEGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDAN 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQPAD+ P+LFKEW + L+ E D EPFGK RD I L E +EVI
Sbjct: 66 LRKLNSRLFVIRGQPADVFPRLFKEWNISKLSIEYDSEPFGKERDAAIKKLATEAGLEVI 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDKI 138
>gi|296487421|tpg|DAA29534.1| TPA: cryptochrome 1 (photolyase-like) [Bos taurus]
Length = 543
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
Length = 605
Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 110/131 (83%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD NLR
Sbjct: 1 WFRKGLRLHDNPALRECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLR 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
KLNSRLFVIRGQPAD+ P+LFKEWK T L+ E D EPFGK RD I L E +EVI R
Sbjct: 61 KLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVR 120
Query: 140 VSHTLYDLDQL 150
+SHTLYDLD++
Sbjct: 121 ISHTLYDLDKI 131
>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
Length = 377
Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 113/135 (83%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ +HWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAIHWFRKGLRLHDNPALKECIQGSDTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEWK + L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWKISRLSIEYDSEPFGKERDAAIKKLASEAAVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1 [Pongo abelii]
Length = 586
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+LRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ASLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
Length = 623
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/133 (71%), Positives = 111/133 (83%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSLR+ ++G T RCV+ILDPWFAGSSNVGI++WRFLLQCLEDLD +
Sbjct: 6 VHWFRKGLRLHDNPSLRDSIQGAHTVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEW T L++E D EPFGK RD I L E +EVI
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWNITRLSYEYDSEPFGKERDAAIKKLANEAGVEVI 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDKI 138
>gi|432094365|gb|ELK25942.1| Cryptochrome-1 [Myotis davidii]
Length = 535
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIRGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 SNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI ++SHTLYDLD++
Sbjct: 124 VIVQISHTLYDLDKI 138
>gi|390355184|ref|XP_785873.3| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 754
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 92/134 (68%), Positives = 117/134 (87%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
+VHWFRKGLR+HDNP+L+EGLK + FRC++ILDPWFAGS + G+N+WRFLL+CLEDLD
Sbjct: 20 LVHWFRKGLRLHDNPALKEGLKSASGFRCIYILDPWFAGSCSKGVNRWRFLLECLEDLDS 79
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+LRKLNSRLF+IRGQPAD+LP+LFKEWK T L+FEED EPFG+ RD+ I TL +E ++V
Sbjct: 80 SLRKLNSRLFLIRGQPADVLPRLFKEWKVTQLSFEEDSEPFGRTRDKAISTLAQEAGVKV 139
Query: 137 IARVSHTLYDLDQL 150
I++VSHTLYD ++
Sbjct: 140 ISKVSHTLYDPQEI 153
>gi|431905253|gb|ELK10298.1| Cryptochrome-1 [Pteropus alecto]
Length = 513
Score = 211 bits (538), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|81864807|sp|Q70AD6.1|CRY1_SPAJD RecName: Full=Cryptochrome-1
gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
Length = 587
Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRL VIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|399220399|gb|AFP33463.1| cryptochrome 2 [Dicentrarchus labrax]
Length = 668
Score = 211 bits (537), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 96/141 (68%), Positives = 114/141 (80%), Gaps = 5/141 (3%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
PNS +HWFRKGLR+HDNP+L+E ++G T RCV+ LDPWFAGSS+VG+N+WRFLLQ
Sbjct: 3 PNS-----IHWFRKGLRLHDNPALQEAIRGAGTVRCVYFLDPWFAGSSSVGVNRWRFLLQ 57
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
CLEDLD NLRKLNSRLFVIRGQPA++ P+LFKEWK + LTFE D EPFGK RD I L
Sbjct: 58 CLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117
Query: 130 RELNIEVIARVSHTLYDLDQL 150
E +EVI + SHTLYDLD++
Sbjct: 118 MEAGVEVIVKTSHTLYDLDKI 138
>gi|432943720|ref|XP_004083252.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 624
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/133 (72%), Positives = 108/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNPSL+E L G T RCV+ILDPWFAGSSNVGIN+WRFLLQ LEDLD +
Sbjct: 6 IHWFRKGLRLHDNPSLKESLLGADTVRCVYILDPWFAGSSNVGINRWRFLLQSLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEWK L++E D EPFGK RD I L E +EV
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWKIARLSYEYDSEPFGKERDAAIKKLASEAGVEVT 125
Query: 138 ARVSHTLYDLDQL 150
RVSHTLYDLDQ+
Sbjct: 126 VRVSHTLYDLDQI 138
>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 110/133 (82%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSLR+ +KG RCV+ILDPWFAGSSNVGI++WRFLLQCLEDLD +
Sbjct: 6 VHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEWK + L++E D EPFGK RD I L E +EV
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATEAGVEVF 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDKI 138
>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 110/133 (82%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSLR+ +KG RCV+ILDPWFAGSSNVGI++WRFLLQCLEDLD +
Sbjct: 6 VHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEWK + L++E D EPFGK RD I L E +EV
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATEAGVEVF 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDKI 138
>gi|432862559|ref|XP_004069915.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 562
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 111/133 (83%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+LR+ ++G T RC++ILDPWFAGSSNVGIN+WRFLL CLEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALRDSIRGSDTLRCIYILDPWFAGSSNVGINRWRFLLHCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEW+ T L++E D EPFGK RD I L E +EV+
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDSEPFGKERDAAIQKLASEAAVEVV 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDRI 138
>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
Length = 588
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T R V+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRWVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
Length = 606
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 110/133 (82%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSLR+ +KG RCV+ILDPWFAGSSNVGI++WRFLLQCLEDLD +
Sbjct: 6 VHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEWK + L++E D EPFGK RD I L E +EV
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATEAGVEVF 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDKI 138
>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
Length = 655
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/141 (65%), Positives = 114/141 (80%), Gaps = 5/141 (3%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
PNS +HWFRKGLR+HDNP+L+E ++G T RCV+ LDPWFAGSSN+G+N+WRFLLQ
Sbjct: 3 PNS-----IHWFRKGLRLHDNPALQEAVRGADTVRCVYFLDPWFAGSSNLGVNRWRFLLQ 57
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
CL+DLD NLRKLNSRLFV+RGQPA++ P+LFKEWK + LTFE D EPFGK RD I L
Sbjct: 58 CLDDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117
Query: 130 RELNIEVIARVSHTLYDLDQL 150
E +EVI + SHTLY+LD++
Sbjct: 118 MEAGVEVIVKTSHTLYNLDKI 138
>gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 109/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSLR+ + G + RCV+ILDPWFAGSSNVGI++WRFLLQCLEDLD +
Sbjct: 6 VHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEW L++E D EPFGK RD I L E +EVI
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANEAGVEVI 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDKI 138
>gi|390979651|ref|NP_001070765.2| cryptochrome 1a [Danio rerio]
gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 109/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSLR+ + G + RCV+ILDPWFAGSSNVGI++WRFLLQCLEDLD +
Sbjct: 6 VHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEW L++E D EPFGK RD I L E +EVI
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANEAGVEVI 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDKI 138
>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
Length = 658
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/141 (65%), Positives = 114/141 (80%), Gaps = 5/141 (3%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
PNS +HWFRKGLR+HDNP+L+E ++G T RCV+ LDPWFAGSSN+G+N+WRFLLQ
Sbjct: 3 PNS-----IHWFRKGLRLHDNPALQEAVRGADTVRCVYFLDPWFAGSSNLGVNRWRFLLQ 57
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
CL+DLD NLRKLNSRLFV+RGQPA++ P+LFKEWK + LTFE D EPFGK RD I L
Sbjct: 58 CLDDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLA 117
Query: 130 RELNIEVIARVSHTLYDLDQL 150
E +EVI + SHTLY+LD++
Sbjct: 118 MEAGVEVIVKTSHTLYNLDKI 138
>gi|348519202|ref|XP_003447120.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 570
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 111/133 (83%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNPSL++ ++G T RC++ILDPWFAGSSNVGIN+WRFLLQCLEDLD +
Sbjct: 6 IHWFRKGLRLHDNPSLKDSIRGSDTLRCIYILDPWFAGSSNVGINRWRFLLQCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEW+ L++E D EPFGK RD I L E +EV+
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWQINRLSYEYDSEPFGKERDAAIQKLANEAGVEVM 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLY+LD++
Sbjct: 126 VRISHTLYNLDKI 138
>gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
Length = 556
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 109/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSLR+ + G + RCV+ILDPWFAGSSNVGI++WRFLLQCLEDLD +
Sbjct: 6 VHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGISRWRFLLQCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEW L++E D EPFGK RD I L E +EVI
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANEAGVEVI 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 126 VRISHTLYDLDKI 138
>gi|348529122|ref|XP_003452063.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 630
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 108/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNPSL+E L G T RCV+ILDPWFAGSSNVGIN+WRFLLQ LEDLD +
Sbjct: 6 IHWFRKGLRLHDNPSLKESLLGADTVRCVYILDPWFAGSSNVGINRWRFLLQSLEDLDSS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEWK T L++E D EPFGK RD I L E +EV
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSEPFGKERDAAIKKLASEAGVEVT 125
Query: 138 ARVSHTLYDLDQL 150
R SHTLY+LD++
Sbjct: 126 VRTSHTLYELDKI 138
>gi|33309543|gb|AAQ03212.1|AF410956_1 cryptochrome 1-like protein [Passer domesticus]
Length = 183
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 107/130 (82%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
FRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD NLRK
Sbjct: 1 FRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRK 60
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140
LNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +EVI R+
Sbjct: 61 LNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRI 120
Query: 141 SHTLYDLDQL 150
SHTLYDLD++
Sbjct: 121 SHTLYDLDKI 130
>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
Length = 514
Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 91/139 (65%), Positives = 112/139 (80%), Gaps = 3/139 (2%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCT---TFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
K +HWFRKGLR+HDNPSLR+ L+ +RCV++LDPWFAGSSNVG+N+WRFLLQCL
Sbjct: 2 KSTIHWFRKGLRLHDNPSLRDALQMLQPGDVWRCVYVLDPWFAGSSNVGVNRWRFLLQCL 61
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
EDLD +LRKLNSRL+VIRGQP D+ P+LFKEWK +CL+FEED EPFG+ RD +M L +E
Sbjct: 62 EDLDASLRKLNSRLYVIRGQPTDVFPRLFKEWKVSCLSFEEDSEPFGRERDMAVMKLAKE 121
Query: 132 LNIEVIARVSHTLYDLDQL 150
++VI R SHTLY L +
Sbjct: 122 AGVKVILRTSHTLYKLQDI 140
>gi|351713396|gb|EHB16315.1| Cryptochrome-1 [Heterocephalus glaber]
Length = 591
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/130 (72%), Positives = 107/130 (82%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
FRKGLR+HDNP+L+E +G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD NLRK
Sbjct: 70 FRKGLRLHDNPALKECTRGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRK 129
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140
LNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +EVI R+
Sbjct: 130 LNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRI 189
Query: 141 SHTLYDLDQL 150
SHTLYDLD++
Sbjct: 190 SHTLYDLDKI 199
>gi|432863953|ref|XP_004070204.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 667
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 110/133 (82%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L+E L G T RCV+ILDPWFAG++NVGIN+WRFLL+ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGAANVGINRWRFLLEALEDLDCS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+KLNSRLFV+RGQP D+ P+LFKEW T LTFE DPEP+GK RD I+ + +E +E +
Sbjct: 66 LKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDPEPYGKERDGAIIKMAQEFGVETV 125
Query: 138 ARVSHTLYDLDQL 150
R SHTLY+LD++
Sbjct: 126 VRNSHTLYNLDRI 138
>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
Length = 643
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/136 (66%), Positives = 112/136 (82%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K+ +HWFRKGLR+HDNP+L E ++ T RCV+ LDPWFAGSSN+G+N+WRFLLQCLEDL
Sbjct: 3 KNSIHWFRKGLRLHDNPALLEAVRDSDTVRCVYFLDPWFAGSSNLGVNRWRFLLQCLEDL 62
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFVIRGQPA+I P+LFK+W + LTFE D EPFGK RD I L E +
Sbjct: 63 DSSLRKLNSRLFVIRGQPANIFPRLFKDWNISQLTFECDSEPFGKERDAAIKKLATEAGV 122
Query: 135 EVIARVSHTLYDLDQL 150
EV++R+SHTLYDLD++
Sbjct: 123 EVVSRISHTLYDLDKI 138
>gi|380254427|dbj|BAL72538.1| cryptochrome1 [Siganus guttatus]
Length = 581
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 109/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+LR+ ++G T RC++ILDPWFAGSS+VGIN+WRFLL CLEDLD +
Sbjct: 6 IHWFRKGLRLHDNPALRDSIRGADTLRCIYILDPWFAGSSSVGINRWRFLLDCLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFVIRGQP D+ P+LFKEW+ T L++E D EPFGK RD + L E +EVI
Sbjct: 66 LRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDSEPFGKERDAAVHKLASEAGVEVI 125
Query: 138 ARVSHTLYDLDQL 150
R+SHTLY L ++
Sbjct: 126 VRISHTLYSLAKI 138
>gi|351696947|gb|EHA99865.1| Cryptochrome-2 [Heterocephalus glaber]
Length = 593
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDRI 157
>gi|426368087|ref|XP_004051044.1| PREDICTED: cryptochrome-2 isoform 1 [Gorilla gorilla gorilla]
Length = 614
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 46 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 105
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 106 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 165
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 166 TENSHTLYDLDRI 178
>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
gi|397473567|ref|XP_003808279.1| PREDICTED: cryptochrome-2 isoform 1 [Pan paniscus]
Length = 614
Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 46 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 105
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 106 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 165
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 166 TENSHTLYDLDRI 178
>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 46 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 105
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 106 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 165
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 166 TENSHTLYDLDRI 178
>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
Length = 584
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 16 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 75
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 76 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 135
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 136 TENSHTLYDLDRI 148
>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2 [Pongo abelii]
Length = 614
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 46 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 105
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 106 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 165
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 166 TENSHTLYDLDRI 178
>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
Length = 639
Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 108/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L E L G T RCV+ LDPWFAG+SN+G+N+WRFLLQ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALLEALNGADTLRCVYFLDPWFAGASNLGVNRWRFLLQSLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNS LFVIRGQPADI P+LFKEWK + LTFE D EPFGK RD I L E +EVI
Sbjct: 66 LRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKKLACEAGVEVI 125
Query: 138 ARVSHTLYDLDQL 150
++SHTLYDLD++
Sbjct: 126 VKISHTLYDLDRI 138
>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
Length = 638
Score = 202 bits (513), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 108/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L E L G T RCV+ LDPWFAG+SN+G+N+WRFLLQ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALLEALNGADTLRCVYFLDPWFAGASNLGVNRWRFLLQSLEDLDAS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNS LFVIRGQPADI P+LFKEWK + LTFE D EPFGK RD I L E +EVI
Sbjct: 66 LRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKKLACEAGVEVI 125
Query: 138 ARVSHTLYDLDQL 150
++SHTLYDLD++
Sbjct: 126 VKISHTLYDLDRI 138
>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
Length = 606
Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 91/133 (68%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSL ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 38 VHWFRKGLRLHDNPSLLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 97
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 98 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 157
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 158 TENSHTLYDLDRI 170
>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
Length = 591
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 91/133 (68%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNPSL ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 23 VHWFRKGLRLHDNPSLLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 82
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 83 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 142
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 143 TENSHTLYDLDRI 155
>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
gi|81882058|sp|Q9R194.1|CRY2_MOUSE RecName: Full=Cryptochrome-2
gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
Length = 592
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 24 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 83
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 84 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 143
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 144 TENSHTLYDLDRI 156
>gi|380254429|dbj|BAL72539.1| cryptochrome3 [Siganus guttatus]
Length = 507
Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 110/133 (82%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L+E L G T RCV+ILDPWFAGS+NVGIN+WRFLL+ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGINRWRFLLEALEDLDNS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+KLNSRLFV++GQP D+ P+L KEWK T LTFE DPEP+GK RD I+ + +E +E I
Sbjct: 66 LKKLNSRLFVVKGQPTDVFPRLLKEWKVTRLTFEYDPEPYGKERDGAIIKMAQEFGVETI 125
Query: 138 ARVSHTLYDLDQL 150
R SHTLY+LD++
Sbjct: 126 VRNSHTLYNLDRI 138
>gi|344247813|gb|EGW03917.1| Cryptochrome-2 [Cricetulus griseus]
Length = 577
Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 9 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 68
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 69 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 128
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 129 TENSHTLYDLDRI 141
>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
Length = 594
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 24 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 83
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 84 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 143
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 144 TENSHTLYDLDRI 156
>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
Length = 596
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/141 (64%), Positives = 108/141 (76%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
P VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ
Sbjct: 20 PRGDGASSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGINRWRFLLQ 79
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM +
Sbjct: 80 SLEDLDRSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMA 139
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+E +EV+ SHTLYDLD++
Sbjct: 140 KEAGVEVVTENSHTLYDLDKI 160
>gi|410973791|ref|XP_003993331.1| PREDICTED: cryptochrome-2, partial [Felis catus]
Length = 582
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 14 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 73
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 74 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 133
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 134 TENSHTLYDLDRI 146
>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
Length = 569
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 1 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 60
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 61 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 120
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 121 TENSHTLYDLDRI 133
>gi|344280774|ref|XP_003412157.1| PREDICTED: cryptochrome-2 [Loxodonta africana]
Length = 593
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/141 (64%), Positives = 109/141 (77%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
P+ VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ
Sbjct: 17 PSMDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQ 76
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM +
Sbjct: 77 SLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMA 136
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+E +EV+ SHTLYDLD++
Sbjct: 137 KEAGVEVVTENSHTLYDLDRI 157
>gi|395815587|ref|XP_003781307.1| PREDICTED: cryptochrome-2 [Otolemur garnettii]
Length = 612
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 44 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 103
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 104 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 163
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 164 TENSHTLYDLDRI 176
>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
gi|81867613|sp|Q923I8.1|CRY2_RAT RecName: Full=Cryptochrome-2
gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
Length = 594
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 24 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 83
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 84 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 143
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 144 TENSHTLYDLDRI 156
>gi|348558770|ref|XP_003465189.1| PREDICTED: cryptochrome-2 [Cavia porcellus]
Length = 593
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDRI 157
>gi|380797951|gb|AFE70851.1| cryptochrome-2 isoform 1, partial [Macaca mulatta]
Length = 579
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/141 (63%), Positives = 109/141 (77%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
P + VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ
Sbjct: 3 PGTDGASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQ 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM +
Sbjct: 63 SLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMA 122
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+E +EV+ SHTLYDL+++
Sbjct: 123 KEAGVEVVTENSHTLYDLERI 143
>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDRI 157
>gi|118572252|sp|Q49AN0.2|CRY2_HUMAN RecName: Full=Cryptochrome-2
gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
Length = 593
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDRI 157
>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
Length = 589
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 21 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 80
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 81 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 140
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 141 TENSHTLYDLDRI 153
>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 isoform 1 [Callithrix jacchus]
Length = 593
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDRI 157
>gi|403254649|ref|XP_003920073.1| PREDICTED: cryptochrome-2 [Saimiri boliviensis boliviensis]
Length = 593
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDRI 157
>gi|73983386|ref|XP_540761.2| PREDICTED: cryptochrome-2 [Canis lupus familiaris]
Length = 593
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDKI 157
>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
Length = 570
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/133 (68%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L L+G + RCV+ILDPWFA SS+ G+N+WRFLLQ LEDLD +
Sbjct: 10 VHWFRKGLRLHDNPALLAALRGANSVRCVYILDPWFAASSSGGVNRWRFLLQSLEDLDSS 69
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ PKLFKEW + LTFE D EPFGK RD IM L +E +EVI
Sbjct: 70 LRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEAGVEVI 129
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 130 VENSHTLYDLDRV 142
>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
gi|402893708|ref|XP_003910033.1| PREDICTED: cryptochrome-2 [Papio anubis]
gi|355566579|gb|EHH22958.1| Cryptochrome-2 [Macaca mulatta]
gi|355752191|gb|EHH56311.1| Cryptochrome-2 [Macaca fascicularis]
Length = 593
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDL+++
Sbjct: 145 TENSHTLYDLERI 157
>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
Length = 582
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFR+GLR+HDNP+L+ L+G + RC++ILDPWFA SS VGIN+WRFLLQ LEDLD +
Sbjct: 15 VHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNS 74
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQP D+ P+LFKEW T LTFE D EPFGK RD I+ L +E +EV+
Sbjct: 75 LRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVV 134
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 135 IENSHTLYDLDRI 147
>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
Length = 557
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L L+ T+ RCV+ILDPWFA SS+ G+N+WRFLLQ LEDLD +
Sbjct: 4 VHWFRKGLRLHDNPALSAALRDATSVRCVYILDPWFAASSSGGVNRWRFLLQSLEDLDTS 63
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW + LTFE D EPFGK RD IM L +E +EVI
Sbjct: 64 LRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEAGVEVI 123
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 124 VENSHTLYDLDRI 136
>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2 isoform 1 [Sus scrofa]
Length = 594
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 106/133 (79%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 26 VHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 85
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P LF+EW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 86 LRKLNSRLFVVRGQPADVFPALFQEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 145
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 146 TENSHTLYDLDKI 158
>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
Length = 580
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 106/133 (79%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 13 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 72
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQP D+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 73 LRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 132
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 133 TENSHTLYDLDKI 145
>gi|431915736|gb|ELK16069.1| Cryptochrome-2 [Pteropus alecto]
Length = 593
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 106/133 (79%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQP D+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDRI 157
>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
Length = 618
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 93/135 (68%), Positives = 108/135 (80%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHW R+GLR+ DN +LRE ++G T RCV+ILDP FAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWVRQGLRLPDNRALREVIQGADTARCVYILDPSFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
Length = 581
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 106/133 (79%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 13 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 72
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQP D+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 73 LRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 132
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 133 TENSHTLYDLDKI 145
>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
Length = 598
Score = 198 bits (504), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 108/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L+E L G T RCV+ILDPWFAGS+NVG+N+WRFLL+ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGVNRWRFLLESLEDLDTS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQP D+ P+LFKEW T LTFE D EP+GK RD I+ + +E +E +
Sbjct: 66 LRKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVETV 125
Query: 138 ARVSHTLYDLDQL 150
R +HTLY+ D++
Sbjct: 126 VRNTHTLYNPDRI 138
>gi|348523572|ref|XP_003449297.1| PREDICTED: cryptochrome-2-like [Oreochromis niloticus]
Length = 672
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 87/133 (65%), Positives = 109/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L+E L G RCV+ILDP+FAG++NVGIN+WRFLL+ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALQEALNGADAVRCVYILDPFFAGAANVGINRWRFLLEALEDLDSS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+KLNSRLFV+RGQP D+ P+LFKEW T LTFE DPEP+GK RD I+ + +E +E I
Sbjct: 66 LKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDPEPYGKERDGAIIKMAQEFGVETI 125
Query: 138 ARVSHTLYDLDQL 150
R SHTLY+LD++
Sbjct: 126 VRNSHTLYNLDRI 138
>gi|399220401|gb|AFP33464.1| cryptochrome 1 [Dicentrarchus labrax]
Length = 567
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 109/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNPSLR+ ++G + RCV+ILDPWFAGSSNVGIN+WRFLL CLEDLD +
Sbjct: 6 IHWFRKGLRLHDNPSLRDSIRGADSLRCVYILDPWFAGSSNVGINRWRFLLHCLEDLDNS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRL+VIRGQP D+ P+LFKEW+ L++E D EPFGK RD I L E +EV+
Sbjct: 66 LRKLNSRLYVIRGQPTDVFPRLFKEWQINRLSYEYDSEPFGKERDAAIQKLACEAEVEVM 125
Query: 138 ARVSHTLYDLDQL 150
+VSHTLY+L ++
Sbjct: 126 VQVSHTLYNLVKI 138
>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
Length = 570
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 106/133 (79%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L L+G + RCV+ILDPWFA SS+ G+N+WRFLLQ LEDLD +
Sbjct: 10 VHWFRKGLRLHDNPALLAALRGANSVRCVYILDPWFAASSSGGVNRWRFLLQSLEDLDSS 69
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ PKLFKEW + LTFE D EPFGK RD IM L +E +EVI
Sbjct: 70 LRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEAGVEVI 129
Query: 138 ARVSHTLYDLDQL 150
SHTLYD D++
Sbjct: 130 VENSHTLYDSDRV 142
>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
Length = 568
Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L L+G + RCV+ILDPWFA SS+ G+N+WRFLLQ LEDLD +
Sbjct: 10 VHWFRKGLRLHDNPALLSALRGANSVRCVYILDPWFAASSSGGVNRWRFLLQSLEDLDTS 69
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW + LTFE D EPFGK RD IM L +E +EV+
Sbjct: 70 LRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEGGVEVV 129
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 130 VENSHTLYDLDRI 142
>gi|410926431|ref|XP_003976682.1| PREDICTED: cryptochrome-2-like [Takifugu rubripes]
Length = 718
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 109/133 (81%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L+E L G + RC++ILDPWFAG++NVGIN+WRFLL+ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALQEALNGADSLRCIYILDPWFAGAANVGINRWRFLLEALEDLDCS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKL+SRL V+RGQP D+ P+L K+WK T LTFE DPEP+GK RD I+ L ++ +E I
Sbjct: 66 LRKLSSRLLVVRGQPTDVFPRLLKDWKVTRLTFEFDPEPYGKERDGAIIKLAQQFGVETI 125
Query: 138 ARVSHTLYDLDQL 150
R SHTLY+LD++
Sbjct: 126 VRNSHTLYNLDRI 138
>gi|354486342|ref|XP_003505340.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Cricetulus
griseus]
Length = 583
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/135 (68%), Positives = 107/135 (79%), Gaps = 4/135 (2%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRK DNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRK----XDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 59
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 60 SNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 119
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 120 VIVRISHTLYDLDKI 134
>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
Length = 598
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L+E L G T RCV+ILDPWFAGS+NVG+N+WRFLL+ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGVNRWRFLLESLEDLDTS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRL V+RGQP D+ P+LFKEW T LTFE D EP+GK RD I+ + +E +E +
Sbjct: 66 LRKLNSRLSVVRGQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVETV 125
Query: 138 ARVSHTLYDLDQL 150
R SHTLY+ D++
Sbjct: 126 VRNSHTLYNPDRI 138
>gi|118572251|sp|Q8QG60.2|CRY2_CHICK RecName: Full=Cryptochrome-2
Length = 582
Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 106/133 (79%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFR+GLR+HDNP+L+ L+G + RC++ILDPWFA SS VGIN+WRFLLQ LEDLD +
Sbjct: 15 VHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNS 74
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQP D+ P+LFKEW T L FE D EPFGK RD I+ L +E +EV+
Sbjct: 75 LRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKEAGVEVV 134
Query: 138 ARVSHTLYDLDQL 150
SHTLY+LD++
Sbjct: 135 IENSHTLYNLDRI 147
>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
Length = 586
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 108/141 (76%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
P + VHWFR+GLR+HDNP+L+ ++ RC++ILDPWFA SS+VGIN+WRFLLQ
Sbjct: 5 PGPLGRCSVHWFRRGLRLHDNPALQAAIRDGGPVRCIYILDPWFAASSSVGINRWRFLLQ 64
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
LEDLD +LRKL SRLFV+RGQP D+ P+LFKEW+ T LTFE D EPFGK RD I+ L
Sbjct: 65 SLEDLDNSLRKLGSRLFVVRGQPTDVFPRLFKEWRVTRLTFEYDSEPFGKERDAAIVKLA 124
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+E +EVI SHTLYDLD++
Sbjct: 125 KEAGVEVITENSHTLYDLDRI 145
>gi|443710319|gb|ELU04573.1| hypothetical protein CAPTEDRAFT_178510 [Capitella teleta]
Length = 597
Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 114/151 (75%), Gaps = 1/151 (0%)
Query: 7 PTNPNSTEK-HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR 65
P P+ +K ++++WFR+ LR+HDN +L E LK TFRC+FILDPWFAG+S VGINKWR
Sbjct: 9 PGEPSKKKKKNVLYWFRRCLRLHDNAALVEVLKEADTFRCIFILDPWFAGASQVGINKWR 68
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD LRKLNSRLFVIRGQP DI PKLF++W + L FEEDPEPFGK RD +
Sbjct: 69 FLLQSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDPEPFGKERDSAV 128
Query: 126 MTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
T ++ IEVI + SHTL++L ++ + G
Sbjct: 129 CTKSQDAGIEVIIKTSHTLFNLQKILDKNSG 159
>gi|387015302|gb|AFJ49770.1| Cryptochrome-2-like [Crotalus adamanteus]
Length = 590
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 106/133 (79%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFR+GLR+HDNP+L+ ++ T+ RC++ILDPWFA SS VGIN+WRFLLQ LEDLD +
Sbjct: 20 VHWFRRGLRLHDNPALQAAIREATSVRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNS 79
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQP D+ P+LFKEW T LTFE D EPFG+ RD I+ L +E ++V
Sbjct: 80 LRKLNSRLFVVRGQPTDVFPRLFKEWGVTHLTFEYDSEPFGEERDAAIVKLAKEAGVKVT 139
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 140 TENSHTLYDLDRI 152
>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
Length = 361
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 103/128 (80%)
Query: 23 KGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLN 82
KGLR+HDNP+LRE ++G T RCV+ILDPWFA SS VGIN+WRFLLQ LEDLD +LRKLN
Sbjct: 1 KGLRLHDNPALRECIQGADTVRCVYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKLN 60
Query: 83 SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142
SRLFV+RGQP D+ P+LFKEW T LTFE D EPFGK RD I+ L +E +EV+ SH
Sbjct: 61 SRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIENSH 120
Query: 143 TLYDLDQL 150
TLYDLD++
Sbjct: 121 TLYDLDRI 128
>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1, partial [Passer domesticus]
Length = 361
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 103/128 (80%)
Query: 23 KGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLN 82
KGLR+HDNP+L+E L+ T+ RC++ILDPWFA SS VGIN+WRFLLQ LEDLD +LRKLN
Sbjct: 1 KGLRLHDNPALQEALRDATSLRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKLN 60
Query: 83 SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142
SRLFV+RGQP D+ P+LFKEW T LTFE D EPFGK RD I+ L +E +EV+ SH
Sbjct: 61 SRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIENSH 120
Query: 143 TLYDLDQL 150
TLYDLD++
Sbjct: 121 TLYDLDRI 128
>gi|440895552|gb|ELR47705.1| Cryptochrome-2, partial [Bos grunniens mutus]
Length = 564
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 84/128 (65%), Positives = 102/128 (79%)
Query: 23 KGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLN 82
KGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +LRKLN
Sbjct: 1 KGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDRSLRKLN 60
Query: 83 SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142
SRLFV+RGQPAD+ P+LF+EW T LTFE D EPFGK RD IM + +E +EV+ SH
Sbjct: 61 SRLFVVRGQPADVFPRLFQEWGVTRLTFEYDSEPFGKERDTAIMKMAKEAGVEVVTENSH 120
Query: 143 TLYDLDQL 150
TLYDLD++
Sbjct: 121 TLYDLDKI 128
>gi|334348060|ref|XP_003342014.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Monodelphis
domestica]
Length = 585
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 85/132 (64%), Positives = 100/132 (75%)
Query: 19 HWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINL 78
HWFRK LR+ NP+L+ ++G T CV+I DPWF GSSN G N+W+FLLQCLEDLD NL
Sbjct: 7 HWFRKRLRLPHNPALKGCIQGADTVCCVYIRDPWFGGSSNFGANEWKFLLQCLEDLDANL 66
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
RKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +EVI
Sbjct: 67 RKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIV 126
Query: 139 RVSHTLYDLDQL 150
R+SHTLYDLD++
Sbjct: 127 RISHTLYDLDKI 138
>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
Length = 662
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 86/169 (50%), Positives = 110/169 (65%), Gaps = 36/169 (21%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L+E L G + RCV++LDPWFAG++NVGIN+WRFLL+ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALQEALSGADSLRCVYVLDPWFAGAANVGINRWRFLLEALEDLDCS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFK------------------------------------ 101
L+KLNSRLFV+RGQP D+ P+L K
Sbjct: 66 LKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLILSVCVPQ 125
Query: 102 EWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
EWK T LTFE DPEP+GK RD I+ + ++ +E I R SHTLY+LD++
Sbjct: 126 EWKVTRLTFEYDPEPYGKERDGAIIKMAQQFGVETIVRNSHTLYNLDRI 174
>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 625
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 28/163 (17%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW----------- 64
H +HWFRKGLR+HDNPSL++ L G + RCV+ILDPWFAGSSNVGIN+W
Sbjct: 4 HTIHWFRKGLRLHDNPSLKDSLLGADSVRCVYILDPWFAGSSNVGINRWRICLRSPLTVS 63
Query: 65 ------RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFK-----------EWKTTC 107
RFLLQ LEDLD +LRKLNSRLFVIRGQP D+ P+LFK EW +
Sbjct: 64 QEQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQEWNISR 123
Query: 108 LTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
L++E D EPFGK RD I L E +EV +SHTLYDLD++
Sbjct: 124 LSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTLYDLDKI 166
>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Nomascus
leucogenys]
Length = 543
Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 82/128 (64%), Positives = 99/128 (77%)
Query: 23 KGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLN 82
KG R+H P+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +LRKLN
Sbjct: 53 KGCRIHKQPTLLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLN 112
Query: 83 SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142
SRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+ SH
Sbjct: 113 SRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSH 172
Query: 143 TLYDLDQL 150
TLYDLD++
Sbjct: 173 TLYDLDRI 180
>gi|149635020|ref|XP_001507425.1| PREDICTED: cryptochrome-2 [Ornithorhynchus anatinus]
Length = 582
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 100/125 (80%)
Query: 26 RMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRL 85
R+HDNP+L+ L+G + RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +LRKLNSRL
Sbjct: 20 RLHDNPALQAALRGARSVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRL 79
Query: 86 FVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLY 145
FV+RGQP D+ P+LFKEW T LTFE D EPFGK RD I+ + +E +EV+ SHTLY
Sbjct: 80 FVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTENSHTLY 139
Query: 146 DLDQL 150
DLD++
Sbjct: 140 DLDRI 144
>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
Length = 541
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 100/135 (74%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
H +HW RKGLR+HDNP+LR+ + TFR V+ILD SSN+G+N WRFLLQ LEDLD
Sbjct: 22 HSIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVASSNIGLNLWRFLLQALEDLD 81
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+LRKLNSRLFVIRGQPAD+ P+LF+EW T LTFEED EPFGK RD I L RE +E
Sbjct: 82 DSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLAREAGVE 141
Query: 136 VIARVSHTLYDLDQL 150
V + SHTLY L +
Sbjct: 142 VASHRSHTLYHLQGI 156
>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 84/169 (49%), Positives = 108/169 (63%), Gaps = 36/169 (21%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L+E L G + RCV++LDPWFAG++NVGIN+WRFLL+ LEDLD +
Sbjct: 6 VHWFRKGLRLHDNPALQEALSGADSLRCVYVLDPWFAGAANVGINRWRFLLEALEDLDCS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFK------------------------------------ 101
L+KLNSRLFV+RGQP D+ P+L K
Sbjct: 66 LKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLILSVCVPQ 125
Query: 102 EWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
EWK T LTFE DP +GK RD I+ + ++ +E I R SHTLY+LD++
Sbjct: 126 EWKVTRLTFEYDPRAYGKERDGAIIKMAQQFGVETIVRNSHTLYNLDRI 174
>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
Length = 463
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 100/135 (74%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
H +HW RKGLR+HDNP+LR+ + TFR V+ILD SSN+G+N WRFLLQ LEDLD
Sbjct: 22 HSIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVASSNIGLNLWRFLLQALEDLD 81
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+LRKLNSRLFVIRGQPAD+ P+LF+EW T LTFEED EPFGK RD I L RE +E
Sbjct: 82 DSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLAREAGVE 141
Query: 136 VIARVSHTLYDLDQL 150
V + SHTLY L +
Sbjct: 142 VASHRSHTLYHLQGI 156
>gi|28279917|gb|AAH44204.1| Cry5 protein, partial [Danio rerio]
Length = 545
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 114/155 (73%), Gaps = 5/155 (3%)
Query: 2 SPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGI 61
SP +T + N+ +HWFRKGLR+HDNP+L LK C +F+LDPWF ++ +GI
Sbjct: 21 SPKATTMSHNT-----IHWFRKGLRLHDNPALIAALKDCRHIYPLFLLDPWFPKNTRIGI 75
Query: 62 NKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
N+WRFL++ L+DLD +L+KLNSRLFV+RG P ++LPKLFK+WK T LTFE D EP+ + R
Sbjct: 76 NRWRFLIEALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSR 135
Query: 122 DQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
D+ +M L +E +EV ++SHTLY++D++ ++ G
Sbjct: 136 DKEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNG 170
>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
Length = 519
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 107/139 (76%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L LK C +F+LDPWF ++ +GIN+WRFL++ L+DLD +
Sbjct: 6 IHWFRKGLRLHDNPALIAALKDCRHIYPLFLLDPWFPKNTRIGINRWRFLIEALKDLDSS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+KLNSRLFV+RG P ++LPKLFK+WK T LTFE D EP+ + RD+ +M L +E +EV
Sbjct: 66 LKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKEYGVEVT 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
++SHTLY++D++ ++ G
Sbjct: 126 PKISHTLYNIDRIIDENNG 144
>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
Length = 543
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/135 (64%), Positives = 102/135 (75%), Gaps = 2/135 (1%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG--INKWRFLLQCLEDLD 75
VHWFRKGLR+HDNP+L L+G RCV+ILDPWFA SS+ +N+WRFLLQ LEDLD
Sbjct: 9 VHWFRKGLRLHDNPALLAALRGARCVRCVYILDPWFAASSSSSGGVNRWRFLLQSLEDLD 68
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+LRKL SRLFV RGQPAD+ P+LFKEW T LTF+ EPFGK RD IM L +E +E
Sbjct: 69 SSLRKLGSRLFVGRGQPADVFPRLFKEWGVTRLTFQYYSEPFGKERDAAIMKLAKEAGVE 128
Query: 136 VIARVSHTLYDLDQL 150
VI SHTLYDLD++
Sbjct: 129 VIVESSHTLYDLDKI 143
>gi|302745164|gb|ADL62685.1| cryptochrome 5, partial [Phreatichthys andruzzii]
Length = 411
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 108/139 (77%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L LK C +F+LDPW+ ++++GIN+WRFL++ L+DLD +
Sbjct: 6 IHWFRKGLRLHDNPALLAALKDCRHIYPLFLLDPWYPNNTHIGINRWRFLIEALKDLDSS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+KLNSRLFV+ G PA++LPKLF++WK T LTFE D EP+ + RD+ +M L E +EVI
Sbjct: 66 LKKLNSRLFVVSGPPAEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMKLAEENGVEVI 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
++SHTLY++D++ ++ G
Sbjct: 126 PKISHTLYNIDRIIEENNG 144
>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
Length = 552
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/132 (59%), Positives = 99/132 (75%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
KH +HW RK LR+HDNPSL E +KG T R +++LD ++ +G+N WRFLLQ LED+
Sbjct: 27 KHAIHWVRKDLRLHDNPSLLEAVKGSDTVRIIYVLDTKVDHATGIGLNLWRFLLQSLEDV 86
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LRKLNSRLFV+RGQPAD+ P+LF+EWKT+ LTFEED EPFG+ +D I L +E +
Sbjct: 87 DDSLRKLNSRLFVVRGQPADVFPRLFREWKTSFLTFEEDSEPFGREKDAAIRLLAQESGV 146
Query: 135 EVIARVSHTLYD 146
EV SHTLYD
Sbjct: 147 EVAVGRSHTLYD 158
>gi|348500170|ref|XP_003437646.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 522
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/139 (54%), Positives = 102/139 (73%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L LK C VFILDP+ + VGIN+WRFL+ L+DLD +
Sbjct: 6 IHWFRKGLRLHDNPALMAALKDCKQLYPVFILDPYLQNKACVGINRWRFLIGALKDLDGS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RG+P D+LPKLF +WK T L +E D EP+ RD + +L +E +EVI
Sbjct: 66 LRKLNSRLFVVRGKPEDVLPKLFTKWKVTRLAYEYDTEPYSLQRDSKVTSLAKEHGVEVI 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+VSHTLY++D++ ++ G
Sbjct: 126 YKVSHTLYNIDRIIEENNG 144
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas]
Length = 510
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 99/129 (76%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L+ K + VFILDPWFA ++NVG+N+WRFLLQ L++LD N
Sbjct: 6 IHWFRKGLRLHDNPALQAACKVADDVKPVFILDPWFANNANVGVNRWRFLLQTLQNLDEN 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+K+NSRL++I+G+PAD+ PKLFK W + LTFEED EP+ RD I L E N++V
Sbjct: 66 LKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEEDIEPYALTRDSEIKKLADEHNVKVT 125
Query: 138 ARVSHTLYD 146
+ VSHTL+D
Sbjct: 126 SCVSHTLFD 134
>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
Length = 526
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 103/139 (74%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L +K C +FILDPWF + V +N+WRFL+ L+DLD N
Sbjct: 6 IHWFRKGLRLHDNPALLAAMKDCAELHPIFILDPWFPKNMQVSVNRWRFLIDALKDLDEN 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+K+NSRLFV+RG+PA++ P LFK+WK T LTFE D EP+ + RD + L E +++VI
Sbjct: 66 LKKINSRLFVVRGKPAEVFPLLFKKWKVTRLTFEVDIEPYSRQRDAEVEKLAAEHDVQVI 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+VS+TLYD+D++ ++ G
Sbjct: 126 QKVSNTLYDIDRIIAENNG 144
>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
Length = 531
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 103/139 (74%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L +K C +FILDPWF + V +N+WRFL++ L+DLD N
Sbjct: 6 IHWFRKGLRLHDNPALLAAMKDCAELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLDEN 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+K+NSRLFV+RG+P ++ P LFK+WK T LTFE D EP+ + RD ++ L E N++VI
Sbjct: 66 LKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAEHNVQVI 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+VS+TLY +D++ ++ G
Sbjct: 126 QKVSNTLYAIDRIIAENNG 144
>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 103/139 (74%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L +K C +FILDPWF + V +N+WRFL++ L+DLD N
Sbjct: 6 IHWFRKGLRLHDNPALLAAMKDCAELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLDEN 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+K+NSRLFV+RG+P ++ P LFK+WK T LTFE D EP+ + RD ++ L E N++VI
Sbjct: 66 LKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAEHNVQVI 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+VS+TLY +D++ ++ G
Sbjct: 126 QKVSNTLYAIDRIIAENNG 144
>gi|390339199|ref|XP_788938.2| PREDICTED: cryptochrome-2-like [Strongylocentrotus purpuratus]
Length = 524
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 98/132 (74%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L ++G FR +FILDP F S VGIN+WRFLL+ L+DLD +
Sbjct: 7 IHWFRKGLRIHDNPALLTAIQGTKVFRPIFILDPHFIESEKVGINRWRFLLETLQDLDYS 66
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
R L +RLFV+RG P + P++FK+W T LTFE D EP+ + RDQ ++ L ++ ++EVI
Sbjct: 67 FRALGTRLFVVRGNPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQEVIELAKKNDVEVI 126
Query: 138 ARVSHTLYDLDQ 149
+VSHTLYD ++
Sbjct: 127 TKVSHTLYDTER 138
>gi|187608706|ref|NP_001120012.1| uncharacterized protein LOC100144974 [Xenopus (Silurana)
tropicalis]
gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 102/139 (73%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L + C +FILDPWF + V +N+WRFL++ L+DLD N
Sbjct: 6 IHWFRKGLRLHDNPALLAAMNDCAELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLDEN 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+K+NSRLFV+RG+P ++ P LFK+WK T LTFE D EP+ + RD ++ L E N++VI
Sbjct: 66 LKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAEHNVQVI 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+VS+TLY +D++ ++ G
Sbjct: 126 QKVSNTLYAIDRIIAENNG 144
>gi|432852920|ref|XP_004067451.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 521
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 101/139 (72%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L L+ C +FILDP+ + GIN+ RFL+ L+DLD +
Sbjct: 6 IHWFRKGLRLHDNPALMAALRDCKELYPLFILDPYLYDQNLAGINRLRFLISSLQDLDCS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RG+P ++LPKLF +W T LT+E D EP+ + RD+N+ L E I+VI
Sbjct: 66 LRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTEPYSRSRDKNVTMLAEEQRIQVI 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
++SHTLYD+D++ ++ G
Sbjct: 126 YKISHTLYDIDRIIEENNG 144
>gi|302745160|gb|ADL62683.1| cryptochrome 3, partial [Phreatichthys andruzzii]
Length = 475
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 90/116 (77%)
Query: 35 EGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD 94
E L G T RCV+ILDPWFAGS+NVG+N+WRFLL LEDLD +LRKLNSRLFV+RGQP D
Sbjct: 1 EALNGADTVRCVYILDPWFAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVRGQPTD 60
Query: 95 ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ P+LFKEW T LTFE D EP+GK RD I+ + +E ++ + R +HTLY+ D++
Sbjct: 61 VFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVQTVVRNTHTLYNPDRI 116
>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
Length = 523
Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 102/139 (73%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L L+ C VF+LDP+ + N+GIN+W+FL+ L+DLD +
Sbjct: 6 IHWFRKGLRLHDNPALVAALRDCKEIYPVFVLDPYSPNNVNIGINRWKFLIGALKDLDCS 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RG+ ++ PKLF++WK T LT+E D EPF RD+ + L E +E+I
Sbjct: 66 LRKLNSRLFVVRGKTDEVFPKLFQKWKVTRLTYEYDTEPFSLRRDKEVGRLAEEHGVEII 125
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+VSHTLY++D++ ++ G
Sbjct: 126 YKVSHTLYNIDRIIEENNG 144
>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 530
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 101/139 (72%), Gaps = 1/139 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L +K +FILDPWF + V IN+WRFL++ L+DLD +
Sbjct: 6 IHWFRKGLRLHDNPALLAAMKNSAEIYPIFILDPWFPKNMQVSINRWRFLIESLKDLDES 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+KLNSRLFV+RG+PA++ P+LF +WK T L FE D EP+ + RD ++ L E ++VI
Sbjct: 66 LKKLNSRLFVVRGRPAEVFPELFTKWKVTRLAFEVDTEPYAR-RDAEVVRLAAEHGVQVI 124
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+VSHTLYD +++ ++ G
Sbjct: 125 QKVSHTLYDTERIIVENSG 143
>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2050
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/139 (52%), Positives = 98/139 (70%), Gaps = 1/139 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L L+ C VFILDP S VGIN+ RFL+ L DLD++
Sbjct: 6 IHWFRKGLRLHDNPALMAALRDCKELYPVFILDPHLHNKS-VGINRCRFLIGALRDLDLS 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LR LNSRLFV+RG+P ++ PKLF +WK T LT+E D EP+ RD+ + TL E ++V+
Sbjct: 65 LRNLNSRLFVVRGKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAEESGVQVV 124
Query: 138 ARVSHTLYDLDQLKPDSRG 156
RVSHTLYD +++ ++ G
Sbjct: 125 YRVSHTLYDTERVLEENNG 143
>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
Length = 524
Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/138 (50%), Positives = 97/138 (70%), Gaps = 4/138 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTT----FRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++HWFRKGLR+HDNP+L L+ R VFILDPWF ++ VG N+WRFL+Q L+
Sbjct: 7 VIHWFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPWFVKNAKVGPNRWRFLVQSLQ 66
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DLD NL+K+ SRLF+++G P + K+FKEW LTFE D EP+ K RD+ I L
Sbjct: 67 DLDDNLKKIGSRLFILKGSPTETFKKVFKEWNVKKLTFEVDIEPYAKTRDEEIKKLADHH 126
Query: 133 NIEVIARVSHTLYDLDQL 150
++ V+A+VSHT+YDL+++
Sbjct: 127 SVTVVAKVSHTIYDLEKV 144
>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
Length = 533
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 98/135 (72%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
VHWFR GLR+HDNP+L+E + T R +++LDP + N+G+ +WRF+L+ L DLD
Sbjct: 8 QTVHWFRNGLRLHDNPALKEAFETSQTVRPLYVLDPDVLKNGNIGVVRWRFILESLADLD 67
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NL+KLNSRLFV+RG+P+++ PKLFKEWK + LTFE D + +D ++ + +L ++
Sbjct: 68 NNLKKLNSRLFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANKLGVD 127
Query: 136 VIARVSHTLYDLDQL 150
+ RVSHTLYDLD++
Sbjct: 128 IEQRVSHTLYDLDRI 142
>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome-2, partial [Taeniopygia guttata]
Length = 540
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 84/105 (80%)
Query: 46 VFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT 105
++ILDPWFA +S VGIN+WRFLLQ LEDLD +LRKLNSRLFV+RGQP D+ P+LFKEW
Sbjct: 1 IYILDPWFAATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGV 60
Query: 106 TCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
T LTFE D EPFGK RD I+ L +E +EV+ SHTLYDLD++
Sbjct: 61 TRLTFEYDSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLDRI 105
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/139 (49%), Positives = 98/139 (70%), Gaps = 1/139 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP L L+ C VFILDP S VG+N+ RFL+ L+DLD++
Sbjct: 6 IHWFRKGLRLHDNPGLMAALRDCKELYPVFILDPQLHNKS-VGVNRCRFLIGALKDLDLS 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LR+LN+RLFV+RG+P ++ PKLF +WK T LT+E D EP RD+ + L E I+V+
Sbjct: 65 LRQLNTRLFVVRGKPEEVFPKLFCQWKITKLTYEYDTEPLSLSRDKTVTRLAEEHGIDVV 124
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+VSHTL+D++++ ++ G
Sbjct: 125 CKVSHTLFDINRIIEENNG 143
>gi|422295899|gb|EKU23198.1| cryptochrome [Nannochloropsis gaditana CCMP526]
Length = 560
Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 69/145 (47%), Positives = 99/145 (68%)
Query: 2 SPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGI 61
+ +S P + +HWFRKGLR+HDNP+L E +G T VFILDP FA +G+
Sbjct: 4 TAVSKPGAKGAARTVSLHWFRKGLRLHDNPALLEACEGATHVYPVFILDPHFAKPDVIGV 63
Query: 62 NKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
++RF+LQ +++LD NLR++ SRLFV++GQPA+ LP+LF+EW + LTFE D EP+ KVR
Sbjct: 64 LRYRFMLQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVSKLTFESDTEPYAKVR 123
Query: 122 DQNIMTLCRELNIEVIARVSHTLYD 146
D+++ L + + V SHTL+D
Sbjct: 124 DRHVCELAAKHQVHVQTFPSHTLHD 148
>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
Length = 486
Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats.
Identities = 70/135 (51%), Positives = 93/135 (68%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
S+ +HWFRKG R+HDNP+L L+G T VF++DP FA NVG+ ++ FLL+ L
Sbjct: 2 SSSSISLHWFRKGQRLHDNPALWRALRGATQVYPVFVIDPHFAKPENVGVLRYNFLLESL 61
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
+DLD LR L SRL+V+RG+P + LPK FKEWK T LT+E D EP+ +VRD I L ++
Sbjct: 62 KDLDEQLRGLGSRLYVLRGKPEEQLPKKFKEWKVTRLTYELDTEPYARVRDAAINDLAKK 121
Query: 132 LNIEVIARVSHTLYD 146
N+EVIA H L+D
Sbjct: 122 HNVEVIAEAGHMLHD 136
>gi|443724902|gb|ELU12703.1| hypothetical protein CAPTEDRAFT_226189 [Capitella teleta]
Length = 564
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 89/134 (66%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
+VHWFR GLR+HDNPSL EGL+ C +FILD AG+ G N+ RFL QCLEDLD
Sbjct: 29 VVHWFRHGLRLHDNPSLMEGLRNCKELYPIFILDGEVAGTGTAGYNRMRFLHQCLEDLDK 88
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ +K RL++ +G P DIL LF EW+ T LTFE+DPEP + RD + LC + ++
Sbjct: 89 SFQKFGGRLYIFKGNPVDILAALFDEWQVTKLTFEQDPEPIWEDRDNKVKDLCMKRDVTY 148
Query: 137 IARVSHTLYDLDQL 150
+ R+SHTL+ D +
Sbjct: 149 VERISHTLFHPDDV 162
>gi|449018268|dbj|BAM81670.1| 6-4 photolyase [Cyanidioschyzon merolae strain 10D]
Length = 519
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 73/141 (51%), Positives = 94/141 (66%), Gaps = 2/141 (1%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRC--VFILDPWFAGSSNVGINKWRFLLQC 70
T VHWFRKGLR+HDNP+L + ++ TT VF LDP F VG+N+ FLL+C
Sbjct: 6 TMASAVHWFRKGLRLHDNPALLDAVQNPTTTYVLPVFCLDPIFLRPETVGVNRMNFLLEC 65
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L+DLD LRKL+SRLFV+RG P + LP F+++ T LTFE D EP+ K RD + LC
Sbjct: 66 LQDLDQQLRKLHSRLFVLRGNPLEQLPVFFRKYHTRLLTFEFDTEPYAKQRDTQVRRLCA 125
Query: 131 ELNIEVIARVSHTLYDLDQLK 151
EL IEV R +HTLYD + ++
Sbjct: 126 ELGIEVRTRATHTLYDPEDIR 146
>gi|302745154|gb|ADL62680.1| criptochrome 1b, partial [Phreatichthys andruzzii]
Length = 564
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 77/95 (81%)
Query: 56 SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPE 115
SSNVGIN+WRFLLQCLEDLD +LRKLNSRLFVIRGQP D+ P+LFKEWK T L++E D E
Sbjct: 1 SSNVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSE 60
Query: 116 PFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
PFGK RD I L E +EV R+SHTLYDLD++
Sbjct: 61 PFGKDRDAAIKKLATEAGVEVFVRISHTLYDLDKI 95
>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 85/133 (63%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRK LR+HDNP+L E K C F V+ LDP SN+ N+W FLL+ L DLD N
Sbjct: 19 MHWFRKDLRLHDNPALLESFKNCQAFYGVYFLDPASVQRSNLSPNRWWFLLESLRDLDYN 78
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LR L SRL V+RGQP +PKL +W LT E D EP K RD + L + L +EVI
Sbjct: 79 LRSLGSRLLVVRGQPVQEMPKLLDQWNIKRLTLEYDSEPPAKQRDAVVTHLAKNLGVEVI 138
Query: 138 ARVSHTLYDLDQL 150
RVSHTLYD++ +
Sbjct: 139 QRVSHTLYDVETV 151
>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
Length = 540
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 92/152 (60%), Gaps = 6/152 (3%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 2 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRW 61
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 62 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121
Query: 125 IMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ L + + V SHT+Y+ + +K + G
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYNPELVKAKNLG 153
>gi|195148597|ref|XP_002015257.1| GL19602 [Drosophila persimilis]
gi|194107210|gb|EDW29253.1| GL19602 [Drosophila persimilis]
Length = 204
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGSSNVGINKW 64
++T +VHWFRKGLR+HDNP+L + R +FILDP VG N+W
Sbjct: 2 DATHATLVHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGANRW 61
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q L DLD LRKLNSRLFV+RG+P D+ P++FK W+ LTFE D EP+ RD
Sbjct: 62 RFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEPYALQRDAA 121
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + I+V SHT+Y+
Sbjct: 122 VQKLAKAEGIKVDTHCSHTIYN 143
>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
Length = 498
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 89/131 (67%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDN LR ++G TFR +F LD ++ V N WRFL++ L DLD +
Sbjct: 5 VHWFRKGLRLHDNEPLRRAIEGSDTFRGIFFLDKAAVKNAKVSPNGWRFLIESLRDLDQS 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+K NSRLF+I+GQP D+ PKL K+W + LTFE D EPF + RD + + + ++VI
Sbjct: 65 LQKYNSRLFIIQGQPIDVFPKLIKQWNISKLTFEYDSEPFPRQRDLAVKRIAEKAGVDVI 124
Query: 138 ARVSHTLYDLD 148
SHTLYD++
Sbjct: 125 VCSSHTLYDIE 135
>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
Length = 540
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 67/136 (49%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 17 MVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
+VHWFRKGLR+HDNP+L + G R +FILDP VG N+WRFL Q
Sbjct: 8 LVHWFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQT 67
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
LEDLD LRKLNSRLFV+RG+PAD+ P++FK W+ L+FE D EP+ RD + L +
Sbjct: 68 LEDLDNQLRKLNSRLFVVRGKPADVFPRIFKSWRVEILSFETDIEPYSMTRDAAVQKLAK 127
Query: 131 ELNIEVIARVSHTLYD 146
++V SHT+Y+
Sbjct: 128 TEGVKVETYCSHTIYN 143
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti]
Length = 553
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 92/145 (63%), Gaps = 6/145 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGC------TTFRCVFILDPWFAGSSNVGINKWR 65
S+++ +VHWFRKGLR+HDNP+L ++ C R VFILDP VG N+WR
Sbjct: 2 SSQQTVVHWFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDPAIVQWLRVGPNRWR 61
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FL Q L DLD NLRK+NSRL+V+RG P D+ PKLF+EW + LTFE D EP+ RD +
Sbjct: 62 FLQQTLADLDRNLRKINSRLYVVRGNPVDVFPKLFQEWNVSFLTFEHDIEPYSIKRDATV 121
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
++ +++ S T+YD D +
Sbjct: 122 EEQAKKHGVKIQIEKSLTIYDPDAI 146
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + + V SHT+Y+
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYN 166
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + + V SHT+Y+
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYN 166
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + + V SHT+Y+
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYN 166
>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
Length = 520
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 91/139 (65%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRK LR+HDNPSLRE L+ F V+ L P A +V +N+W FLL+ L DLD +
Sbjct: 21 LHWFRKDLRLHDNPSLRECLRNSKVFYGVYFLPPSEAKQGSVSLNRWGFLLESLRDLDTS 80
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L + SRLFVIRG P ++LP LFK+W ++FE D EP+ RD I L +E IEVI
Sbjct: 81 LVECGSRLFVIRGNPVEMLPNLFKKWNINQMSFEVDSEPYSNSRDLVISHLAKENGIEVI 140
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+RVSHTLYD L+ S G
Sbjct: 141 SRVSHTLYDPRILRGLSSG 159
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 2 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRW 61
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 62 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + + V SHT+Y+
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYN 143
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 2 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 61
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 62 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 121
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + + V SHT+Y+
Sbjct: 122 VQKLAKAEGVRVETHCSHTIYN 143
>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
Length = 492
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 87/133 (65%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRK LR+HDNPSL L C+TF +++LD A +S + N+W FL +CLE LD
Sbjct: 5 VHWFRKDLRLHDNPSLLASLDNCSTFFPIYVLDMESARASKISANRWNFLCECLEALDRQ 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LR L SRLFVIRG+ D+LP+LF EW LTFE + EP G+ RD I L N++++
Sbjct: 65 LRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAENANVQLL 124
Query: 138 ARVSHTLYDLDQL 150
+H LYD D++
Sbjct: 125 QHNAHLLYDTDEV 137
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/138 (47%), Positives = 89/138 (64%), Gaps = 2/138 (1%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN--VGINKWRFLLQCLE 72
K+ + WFRKGLR+HDNP+L E K VF+LDP F S+ V +N++ FLL+ LE
Sbjct: 5 KNSIIWFRKGLRLHDNPALLEACKDAKHVYPVFVLDPHFLQQSSYKVSVNRYNFLLESLE 64
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DL + + SRL V+RG+P ++ P++F+EW T L FE D EP+ KVRD + L E
Sbjct: 65 DLQRSFQARGSRLLVLRGKPEEVFPRVFREWGVTQLCFEHDTEPYAKVRDAAVRRLAAEA 124
Query: 133 NIEVIARVSHTLYDLDQL 150
+EV+ +SHTLYD D L
Sbjct: 125 GVEVVTPISHTLYDTDML 142
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
Length = 540
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 66/136 (48%), Positives = 86/136 (63%), Gaps = 6/136 (4%)
Query: 17 MVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
+VHWFRKGLR+HDNP+L G R +FILDP VG N+WRFL Q
Sbjct: 8 LVHWFRKGLRVHDNPALSHIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQA 67
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
LEDLD LRKL SRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD ++ L +
Sbjct: 68 LEDLDNQLRKLGSRLFVVRGKPAEVFPRIFKSWRVEILTFETDIEPYSLSRDASVQKLAK 127
Query: 131 ELNIEVIARVSHTLYD 146
++V SHT+Y+
Sbjct: 128 AAGVKVETHCSHTIYN 143
>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
Length = 621
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 65/133 (48%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN--VGINKWRFLLQCLE 72
K+ + WFRKGLR+HDNP+L E +G VFILDP+F S+ VG+N++ FLL+ L
Sbjct: 5 KNSILWFRKGLRLHDNPALLEACRGAAHVYPVFILDPFFLQQSSYKVGVNRYNFLLESLR 64
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DLD + R SRL V+RG+P ++ P++F+EW+ T L FE D EP+ +VRD I L E
Sbjct: 65 DLDASFRSRGSRLLVLRGKPEEVFPRVFREWRITQLCFEVDTEPYARVRDARIQGLADEA 124
Query: 133 NIEVIARVSHTLY 145
+ V VSHTLY
Sbjct: 125 GVAVWTAVSHTLY 137
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
Length = 533
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 66/136 (48%), Positives = 84/136 (61%), Gaps = 6/136 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGSSNVGINKWRFLLQC 70
+VHWFRKGLR+HDNP+L + R +FILDP VG N+WRFL Q
Sbjct: 8 LVHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGANRWRFLQQT 67
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD LRKLNSRLFV+RG+P D+ P++FK W+ LTFE D EP+ RD + L +
Sbjct: 68 LHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEPYALQRDAAVQKLAK 127
Query: 131 ELNIEVIARVSHTLYD 146
I+V SHT+Y+
Sbjct: 128 AEGIKVDTHCSHTIYN 143
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 66/136 (48%), Positives = 86/136 (63%), Gaps = 6/136 (4%)
Query: 17 MVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
+VHWFRKGLR+HDNP+L G R +FILDP VG N+WRFL Q
Sbjct: 8 LVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQT 67
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
LEDLD LRKL+SRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD + L +
Sbjct: 68 LEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRDAAVQKLAK 127
Query: 131 ELNIEVIARVSHTLYD 146
++V SHT+Y+
Sbjct: 128 AEGVKVETHCSHTIYN 143
>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
Length = 540
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 66/136 (48%), Positives = 86/136 (63%), Gaps = 6/136 (4%)
Query: 17 MVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
+VHWFRKGLR+HDNP+L G R +FILDP VG N+WRFL Q
Sbjct: 8 LVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQT 67
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
LEDLD LRKL+SRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD + L +
Sbjct: 68 LEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRDAAVQKLAK 127
Query: 131 ELNIEVIARVSHTLYD 146
++V SHT+Y+
Sbjct: 128 AEGVKVETHCSHTIYN 143
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/137 (48%), Positives = 86/137 (62%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
P + + WFRKGLR+HDNPSL +KG T VF+LDPWF VG+N+ FLL+
Sbjct: 3 PAVAPQRSILWFRKGLRLHDNPSLLAAIKGATHLYPVFVLDPWFLKPDVVGVNRLNFLLE 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L DL +L+ S L V+RG P D+LP+++K+W T L FE D E + + RD I
Sbjct: 63 SLTDLRSSLQARGSNLLVLRGNPQDVLPRVWKDWNITRLCFEADTEDYAEERDTKITAAA 122
Query: 130 RELNIEVIARVSHTLYD 146
+E IEVI+ VSHTLYD
Sbjct: 123 QEAGIEVISCVSHTLYD 139
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 86/136 (63%), Gaps = 6/136 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGSSNVGINKWRFLLQC 70
+VHWFRKGLR+HDNP+L + K T R +FILDP VG N+WRFL Q
Sbjct: 8 LVHWFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQT 67
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD L+KL SRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD + L +
Sbjct: 68 LHDLDQQLQKLGSRLFVVRGKPAEVFPRIFKSWRVELLTFETDIEPYSLARDSAVQKLAK 127
Query: 131 ELNIEVIARVSHTLYD 146
++V SHT+Y+
Sbjct: 128 SDGVKVETHCSHTIYN 143
>gi|322782527|gb|EFZ10476.1| hypothetical protein SINV_15449 [Solenopsis invicta]
Length = 81
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 70/81 (86%)
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFLLQCLEDLD +LRKLNSRLFVIRGQPAD LPKLFKEW TT LTFEEDPEPFG+VRD N
Sbjct: 1 RFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHN 60
Query: 125 IMTLCRELNIEVIARVSHTLY 145
I LC EL I V+ R+SHTLY
Sbjct: 61 ISALCEELGISVVQRISHTLY 81
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/136 (46%), Positives = 87/136 (63%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K + WFRKGLR+HDNP+L + +G + + VF+LDPWF VG N+ RFLL+ L DL
Sbjct: 4 KRTILWFRKGLRVHDNPALVKACEGASAVQPVFVLDPWFIKPERVGANRLRFLLESLTDL 63
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D +LR S L V+ G PA ++P + W+ L +E D EP+ + RD ++ R L +
Sbjct: 64 DASLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPYAQKRDASVNEAARALGV 123
Query: 135 EVIARVSHTLYDLDQL 150
EV A VSHTL+DLD+L
Sbjct: 124 EVHAPVSHTLWDLDRL 139
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
Length = 546
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 6/140 (4%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGSSNVGINKWRF 66
T+ ++HWFRKGLR+HDNP+L + R +FILDP VG N+WRF
Sbjct: 5 TKATLIHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDPGILDWMQVGANRWRF 64
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
L Q L+DLD LR+LNSRL+V+RG+P ++ P+LFK W LTFE D EP+ + RD +
Sbjct: 65 LQQTLDDLDKQLRQLNSRLYVVRGKPIEVFPRLFKSWNVELLTFESDIEPYAQTRDAAVQ 124
Query: 127 TLCRELNIEVIARVSHTLYD 146
+ + I+V SHT+Y+
Sbjct: 125 KIAKAAGIKVETHCSHTIYN 144
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/163 (39%), Positives = 99/163 (60%), Gaps = 12/163 (7%)
Query: 6 TPTNPNSTEK----------HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAG 55
TP+ +ST + + WFRKGLR+HDNP+LR+ G +FI+DP+F
Sbjct: 30 TPSKSSSTSRMASTSSGQQGRSILWFRKGLRLHDNPALRDACTGSAAVFPIFIIDPYFLQ 89
Query: 56 SSN--VGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
SN VG+N+++FLL+ L DL+ +L L S+L V+RG P +++P++ ++W L +E D
Sbjct: 90 KSNNKVGVNRYQFLLESLSDLNSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEID 149
Query: 114 PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
EP+ K RD + + RE +EV SHTLYD D L +++G
Sbjct: 150 TEPYAKARDARVDDMAREAGVEVKKHWSHTLYDTDMLVRENKG 192
>gi|390351006|ref|XP_786331.2| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 439
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 84/139 (60%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFR GLR+HDNP+L EG+ F VFI D AG+ G N+WRFL CL DLD
Sbjct: 7 IHWFRHGLRLHDNPALLEGMTLGKEFYPVFIFDNEVAGTKTSGYNRWRFLHDCLVDLDEQ 66
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+ RLFV G P I ++F EW LTFE DPEP RD+ + LC+E+ +E I
Sbjct: 67 LKAAGGRLFVFHGDPCLIFKEMFLEWGVRYLTFESDPEPIWTERDRRVKALCKEMKVECI 126
Query: 138 ARVSHTLYDLDQLKPDSRG 156
RVSHTL++ D + + G
Sbjct: 127 ERVSHTLWNPDIIIEKNGG 145
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 88/153 (57%)
Query: 4 LSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK 63
+S + + + + WFRK LR+HDNP+L G T + VF+LDPWF S VG N+
Sbjct: 1088 MSVASTSAAAKGRTLVWFRKALRVHDNPALSRGTLHATACQPVFVLDPWFCQPSRVGANR 1147
Query: 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
RFLLQ L DLD LR S L V+ G+P +LP+ K+W+ +T+E D EP+ K+RD
Sbjct: 1148 MRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDA 1207
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ +E A HTLYD+D++ +G
Sbjct: 1208 AVRGALERAGVECHAASGHTLYDVDEMLEKCKG 1240
>gi|449482006|ref|XP_002196554.2| PREDICTED: cryptochrome-1 [Taeniopygia guttata]
Length = 715
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 67/104 (64%), Positives = 75/104 (72%), Gaps = 2/104 (1%)
Query: 49 LDPWFAGSS--NVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106
L P AG NV +N RFLLQCLEDLD NLRKLNSRLFVIRGQPAD+ P+LFKEW
Sbjct: 130 LPPRAAGQEKINVLLNSCRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIA 189
Query: 107 CLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
L+ E D EPFGK RD I L E +EVI R+SHTLYDLD++
Sbjct: 190 KLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDKI 233
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 4 LSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK 63
++ P+ N T + ++ WFRK LR+HDNP+L G+ + + VF+LDPWF S VG N+
Sbjct: 1 MTAPSVSNGTTRSLI-WFRKALRVHDNPALAAGIARAKSAQPVFVLDPWFCKPSRVGANR 59
Query: 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
RFLLQ L DLD LR+ S L V+ G+P +LP+ K WK +T+E D EP+ K+RD
Sbjct: 60 MRFLLQSLRDLDATLRERGSSLLVLHGEPRVVLPRACKTWKVDLVTWEHDIEPYAKMRDT 119
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ +E + HTLYD++++ G
Sbjct: 120 AVRGALERAGVECASSSGHTLYDVEEMLAKCHG 152
>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 540
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 67/132 (50%), Positives = 87/132 (65%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDN +L LKG VF+LDP FA VG+ ++ FLL+ L DLD +
Sbjct: 8 IHWFRKGLRLHDNAALLAALKGAKQVYPVFVLDPHFAKPEFVGVVRYNFLLESLRDLDKS 67
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LR L SRL+V++G+P L + FKEW+ T LTFE D EP+ K+RD L + IEVI
Sbjct: 68 LRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPYAKLRDTQARELAEKHGIEVI 127
Query: 138 ARVSHTLYDLDQ 149
V HTL+D +Q
Sbjct: 128 TTVGHTLHDPEQ 139
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 88/153 (57%)
Query: 4 LSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK 63
+S + + + + WFRK LR+HDNP+L G T + VF+LDPWF S VG N+
Sbjct: 1 MSVASTSAAAKGRTLVWFRKALRVHDNPALSRGTLHATACQPVFVLDPWFCQPSRVGANR 60
Query: 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
RFLLQ L DLD LR S L V+ G+P +LP+ K+W+ +T+E D EP+ K+RD
Sbjct: 61 MRFLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDA 120
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ +E A HTLYD+D++ +G
Sbjct: 121 AVRGALERAGVECHAASGHTLYDVDEMLEKCKG 153
>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
Length = 535
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 86/137 (62%), Gaps = 6/137 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGSSNVGINKWRFLLQCL 71
VHWFRKG+R+HDNP+ + + + R ++ILDP+F G N+WRFL Q L
Sbjct: 14 VHWFRKGMRLHDNPAFKLSCEAKNSNGERYKLRPIYILDPYFRKYIRAGANRWRFLQQSL 73
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
DLD LRKL +RL+VIRG P ++ P LF +W LTFE D EP+ + RD + L R+
Sbjct: 74 VDLDTTLRKLGTRLYVIRGLPHEVFPDLFAKWNVKLLTFELDTEPYARERDNQVEQLARK 133
Query: 132 LNIEVIARVSHTLYDLD 148
++V +VSHT+Y+ +
Sbjct: 134 HGVKVEQKVSHTIYNTE 150
>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
Length = 606
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 75/96 (78%)
Query: 55 GSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
G++ + RFLLQCLEDLD NLRKLNSRLFVIRGQPA++ P+LFKEWK + LTFE D
Sbjct: 10 GTTYISEKNLRFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDS 69
Query: 115 EPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
EPFGK RD I L +E +EVI ++SHTLYDLD++
Sbjct: 70 EPFGKERDAAIKKLAKEAGVEVIVKISHTLYDLDKI 105
>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
Length = 531
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 74/96 (77%)
Query: 55 GSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
SS VGIN+WRFLLQ LEDLD +LRKLNSRLFV+RGQP D+ P+LFKEW T L FE D
Sbjct: 1 ASSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDS 60
Query: 115 EPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
EPFGK RD I+ L +E +EV+ SHTLY+LD++
Sbjct: 61 EPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRI 96
>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
Length = 507
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV--GINKWRFLL 68
N + +HWFRKGLR HDNPSL L+ V+++D + ++ G N WRF++
Sbjct: 3 NKVQHSTIHWFRKGLRFHDNPSLLHALRTSRHVYPVYVVDQNWMKEHDIRYGANWWRFVI 62
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
QCLE+LD LRK RLFV+RG D + F++WK T LT + D EPF ++RD + +
Sbjct: 63 QCLEELDTRLRKYGLRLFVVRGSAEDFFKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKI 122
Query: 129 CRELNIEVIARVSHTLYDLDQ 149
++ +EV+ V+HTLYD+D+
Sbjct: 123 ASDMGVEVVTHVAHTLYDIDR 143
>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome-2 [Bos taurus]
gi|296479702|tpg|DAA21817.1| TPA: cryptochrome 2-like [Bos taurus]
Length = 585
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/133 (50%), Positives = 83/133 (62%), Gaps = 5/133 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WR + +
Sbjct: 22 VHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGINRWRMMKNEATQSLLR 81
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+ L R GQ LP EW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 82 VLTLQWRKLASGGQ----LP-CHMEWGVTRLTFEYDSEPFGKERDTAIMKMAKEAGVEVV 136
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 137 TENSHTLYDLDKI 149
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
Length = 541
Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats.
Identities = 61/142 (42%), Positives = 86/142 (60%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGSSNVGINKW 64
++ + +VHWFRKGLR+HDNP+L + R +FILDP VG N+W
Sbjct: 2 SAKRRTLVHWFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDPGILDWMQVGANRW 61
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q L DLD L++LNSRL+++RG+P D+ P+LF+ W LTFE D EP+ RD
Sbjct: 62 RFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQLLTFESDIEPYALQRDTT 121
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ + E ++V SHT+Y+
Sbjct: 122 VQKIASEHGVKVDTHCSHTIYN 143
>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
Length = 526
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 88/141 (62%), Gaps = 9/141 (6%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGINKWR 65
K + WFRKGLR+HDNP+L +G + VF+LDPWF GS VG+N+ R
Sbjct: 3 KRSLMWFRKGLRLHDNPALLRSCEGASHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIR 62
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD NLRK SRL V+ G P ++P+L +W+ L FE D EP+ + RD +I
Sbjct: 63 FLLQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELCFEFDTEPYAQDRDADI 122
Query: 126 MTLCRELNIEVIARVSHTLYD 146
L + +EV + VSHTL++
Sbjct: 123 KKLATKYGVEVFSPVSHTLFN 143
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
Length = 538
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/141 (44%), Positives = 85/141 (60%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGSSNVGINKWR 65
+ + +VHWFRKGLR+HDNP+L + + R +FILDP VG N+WR
Sbjct: 3 AQRRTLVHWFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDPGILDWMQVGANRWR 62
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FL Q L DLD LR LN+RLFV+RG+P DI P LF+ W+ LT+E D EP+ +RD +
Sbjct: 63 FLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQLLTYETDIEPYAVLRDAAV 122
Query: 126 MTLCRELNIEVIARVSHTLYD 146
L ++V SHT+Y+
Sbjct: 123 QQLAASQGVKVDTHCSHTIYN 143
>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
Length = 393
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 89/133 (66%)
Query: 24 GLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNS 83
GLR+HDNPSL +GL C F VFI D AG+ G N++RFLL+CL+DLD NL+ +
Sbjct: 1 GLRLHDNPSLIDGLSECDRFYPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGT 60
Query: 84 RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHT 143
RL+ +GQP DIL +L +EW T +TFE DPEP + RD+ + L + N++ + +VSHT
Sbjct: 61 RLYCFQGQPTDILERLIEEWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCVEKVSHT 120
Query: 144 LYDLDQLKPDSRG 156
L+D ++ ++ G
Sbjct: 121 LWDPYEIIENNGG 133
>gi|449276417|gb|EMC84949.1| Cryptochrome-1, partial [Columba livia]
Length = 570
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 68/86 (79%)
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFLLQCLEDLD NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD
Sbjct: 3 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAA 62
Query: 125 IMTLCRELNIEVIARVSHTLYDLDQL 150
I L E +EVI R+SHTLYDLD++
Sbjct: 63 IKKLASEAGVEVIVRISHTLYDLDKI 88
>gi|395538375|ref|XP_003771158.1| PREDICTED: cryptochrome-1 [Sarcophilus harrisii]
Length = 671
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/90 (68%), Positives = 69/90 (76%), Gaps = 2/90 (2%)
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFLLQCLEDLD NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD
Sbjct: 159 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAA 218
Query: 125 IMTLCRELNIEVIARVSHTLYDLDQLKPDS 154
I L E +EVI R+SHTLYDLD KP++
Sbjct: 219 IKKLASEAGVEVIVRISHTLYDLD--KPEA 246
>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
Length = 611
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 77/121 (63%), Gaps = 14/121 (11%)
Query: 30 NPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIR 89
N S E L TF +F L+ RFLLQCLEDLD NLRKLNSRLFVIR
Sbjct: 22 NNSYYEYLDISVTFFIMFALE--------------RFLLQCLEDLDANLRKLNSRLFVIR 67
Query: 90 GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQ 149
GQPAD+ P+LFKEW L+ E D EPFGK RD I L E +EVI R+SHTLYDLD+
Sbjct: 68 GQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLDK 127
Query: 150 L 150
+
Sbjct: 128 I 128
>gi|359073433|ref|XP_002693610.2| PREDICTED: cryptochrome-2 [Bos taurus]
Length = 591
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 66/136 (48%), Positives = 84/136 (61%), Gaps = 5/136 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+W L + L
Sbjct: 22 VHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGINRWSRLCRKTPTLRRG 81
Query: 78 LRKLNSRLFVIRGQPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
R RG+ I+ + +EW T LTFE D EPFGK RD IM + +E +
Sbjct: 82 SRATEPS--PRRGEAGTGEAIMIPVVQEWGVTRLTFEYDSEPFGKERDTAIMKMAKEAGV 139
Query: 135 EVIARVSHTLYDLDQL 150
EV+ SHTLYDLD++
Sbjct: 140 EVVTENSHTLYDLDKI 155
>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
Length = 490
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 89/137 (64%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFRKGLR+HDNP+L + + +FI+DPWF VG+N+ RFLL+ L ++D NLR
Sbjct: 7 WFRKGLRLHDNPALLDAARDAARLYPLFIVDPWFVNPERVGVNRMRFLLESLGEIDGNLR 66
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+L SRL V++G+P ++L ++ W+ L FE D EP+ + RD+ I ++ + + VI+
Sbjct: 67 RLGSRLIVLQGRPQEVLERVLSRWQIGRLCFERDTEPYARRRDEAIRSMAERVGVRVISP 126
Query: 140 VSHTLYDLDQLKPDSRG 156
+HTLYD D+L RG
Sbjct: 127 TAHTLYDPDELIELGRG 143
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCT------TFRCVFILDPWFAGSSNVGINKWRFLLQC 70
++HWFRKGLR+HDNP+L + + R +F+LDP VG N+WRFL Q
Sbjct: 8 LIHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRFLQQS 67
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD NL++LNSRL+++RG+P DI P LF W LTFE D EP+ RD+ + +
Sbjct: 68 LLDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVELLTFETDIEPYAVKRDKAVQDIAA 127
Query: 131 ELNIEVIARVSHTLYD 146
++V SHT+Y+
Sbjct: 128 AHGVKVDTHCSHTIYN 143
>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
Length = 556
Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats.
Identities = 63/138 (45%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 17 MVHWFRKGLRMHDNPSLREGL--------KGCTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+VHWFRKGLR+HDNP+L + K C R +F+LDP VG N+WRFL
Sbjct: 7 IVHWFRKGLRIHDNPALTVAVDKVRANPAKYC--LRPIFVLDPGIRKWLRVGPNRWRFLQ 64
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +LD NLR +NSRL+V+RG P ++ PKLF +W + LT+E D EP+ RD +
Sbjct: 65 QTLANLDENLRSINSRLYVVRGNPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTVEEQ 124
Query: 129 CRELNIEVIARVSHTLYD 146
R+ +EV SHT++D
Sbjct: 125 ARKHWVEVHIEKSHTIFD 142
>gi|156383451|ref|XP_001632847.1| predicted protein [Nematostella vectensis]
gi|156219909|gb|EDO40784.1| predicted protein [Nematostella vectensis]
Length = 159
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 19 HWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINL 78
HWFRK LR+HDNP+L++ L F VF+L F S G N+W+FLLQCL+DL+ +L
Sbjct: 10 HWFRKDLRLHDNPALKDALDNADCFYGVFVLSN-FHPSITSG-NRWKFLLQCLQDLNNSL 67
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
+L S+L ++ G P +I PKL K T LTFE D EPF + RD I + R IEV
Sbjct: 68 EELGSKLIILTGSPVEIFPKLLHSLKVTKLTFEVDTEPFAQQRDSVISHIARSAGIEVKT 127
Query: 139 RVSHTLYDLDQL 150
SHTLYD++ L
Sbjct: 128 HASHTLYDIESL 139
>gi|345326794|ref|XP_001508613.2| PREDICTED: cryptochrome-1-like [Ornithorhynchus anatinus]
Length = 721
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 68/87 (78%)
Query: 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
+RFLLQCLEDLD NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD
Sbjct: 157 FRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDA 216
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQL 150
I L E +EVI R+SHTLY+LD++
Sbjct: 217 AIKKLASEAGVEVIVRISHTLYELDKI 243
>gi|405961052|gb|EKC26912.1| Cryptochrome-1 [Crassostrea gigas]
Length = 517
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 76/110 (69%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
E+ +VHWFR GLR HDNPSL +GL C F VFI D AG+ G N++RFLL+CL+D
Sbjct: 6 EEVVVHWFRHGLRFHDNPSLIDGLSECDRFYPVFIFDGEVAGTKTAGYNRFRFLLECLQD 65
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
LD NL+ +RL+ +GQP DIL +L +EW T +TFE DPEP + RD+
Sbjct: 66 LDKNLKAAGTRLYCFQGQPTDILERLIEEWGVTKVTFEADPEPIWQERDR 115
>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
Length = 558
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 83/137 (60%), Gaps = 10/137 (7%)
Query: 17 MVHWFRKGLRMHDNPSLREGL--------KGCTTFRCVFILDPWFAGSSNVGINKWRFLL 68
++HWFRKGLR+HDNP+L + K C R +F+LDP VG N+WRFL
Sbjct: 7 IIHWFRKGLRIHDNPALSLAVDKVRQNPTKYC--LRPIFVLDPAIRKWLRVGPNRWRFLQ 64
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +LD NLR +NSRL+V+RG P I P+LF W + LT+E D EP+ RD+ +
Sbjct: 65 QTLVNLDENLRTINSRLYVVRGNPVQIFPELFDRWNVSLLTYEHDIEPYAVQRDKTVEGH 124
Query: 129 CRELNIEVIARVSHTLY 145
RE N+ VSHT++
Sbjct: 125 AREHNVTTHVEVSHTIF 141
>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/133 (45%), Positives = 80/133 (60%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFRKGLR+HDNP+L + T + +F+LDPWF S VG N+ RFLLQ L DLD +
Sbjct: 11 IHWFRKGLRVHDNPALVDACADATAVQPIFVLDPWFLTPSRVGANRVRFLLQSLTDLDAS 70
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LR S L V+RG P ++P + W LT E D EP+ RD + + + EV
Sbjct: 71 LRARGSSLLVLRGDPKAVVPAALRAWGCDRLTHEVDTEPYASARDAAVRDAAKRVGAEVK 130
Query: 138 ARVSHTLYDLDQL 150
SHTLYD+++L
Sbjct: 131 TFASHTLYDMERL 143
>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
Length = 378
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 66/84 (78%)
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
LLQCLEDLD NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I
Sbjct: 2 LLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIK 61
Query: 127 TLCRELNIEVIARVSHTLYDLDQL 150
L E +EVI R+SHTLYDLD++
Sbjct: 62 KLATEAGVEVIVRISHTLYDLDKI 85
>gi|432090377|gb|ELK23803.1| Cryptochrome-2 [Myotis davidii]
Length = 539
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
Query: 55 GSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
G + VG FLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D
Sbjct: 11 GRAAVGPG---FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDS 67
Query: 115 EPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
EPFGK RD IM + +E +EV+ SHTLYDLD++
Sbjct: 68 EPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRI 103
>gi|412988942|emb|CCO15533.1| predicted protein [Bathycoccus prasinos]
Length = 574
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 21/158 (13%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRC---------VFILDPWFAGSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L E L F +FILDPWF +VG N+ FLLQ
Sbjct: 11 WFRKGLRIHDNPALSEALIDAKNFGGGDESKKVLPLFILDPWFCNEKSVGANRMNFLLQS 70
Query: 71 LEDLDINLRKL---------NSRLFVIRGQPADILPKLFKEWKTTCLTFE-EDPEPFGKV 120
L +L+ NL L N+ L V++G+P D+LP + K++ + + FE E EPFGK
Sbjct: 71 LTNLNENLGSLLSIENVNDANNCLTVVQGKPKDVLPNVIKKFNVSSVYFEKEQVEPFGKQ 130
Query: 121 RDQNIMTLCRELNIEVIARVSHTLYDLDQL--KPDSRG 156
RD+ I+ +C++LN++V SHTLYD + L K ++G
Sbjct: 131 RDEEIIEMCKKLNVDVNTYASHTLYDQEFLLSKASAKG 168
>gi|149725124|ref|XP_001490350.1| PREDICTED: cryptochrome-2-like [Equus caballus]
Length = 579
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD I
Sbjct: 64 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 123
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
M + +E +EV+ SHTLYDLD++
Sbjct: 124 MKMAKEAGVEVVTENSHTLYDLDRI 148
>gi|444707572|gb|ELW48837.1| Cryptochrome-2 [Tupaia chinensis]
Length = 577
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD I
Sbjct: 57 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 116
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
M + +E +EV+ SHTLYDLD++
Sbjct: 117 MKMAKEAGVEVVTENSHTLYDLDRI 141
>gi|390470436|ref|XP_003734285.1| PREDICTED: cryptochrome-2 isoform 2 [Callithrix jacchus]
Length = 560
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD I
Sbjct: 40 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 99
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
M + +E +EV+ SHTLYDLD++
Sbjct: 100 MKMAKEAGVEVVTENSHTLYDLDRI 124
>gi|426368089|ref|XP_004051045.1| PREDICTED: cryptochrome-2 isoform 2 [Gorilla gorilla gorilla]
Length = 532
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD I
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 71
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
M + +E +EV+ SHTLYDLD++
Sbjct: 72 MKMAKEAGVEVVTENSHTLYDLDRI 96
>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
gi|397473569|ref|XP_003808280.1| PREDICTED: cryptochrome-2 isoform 2 [Pan paniscus]
Length = 532
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD I
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 71
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
M + +E +EV+ SHTLYDLD++
Sbjct: 72 MKMAKEAGVEVVTENSHTLYDLDRI 96
>gi|355681095|gb|AER96735.1| cryptochrome 2 [Mustela putorius furo]
Length = 521
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD I
Sbjct: 1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 60
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
M + +E +EV+ SHTLYDLD++
Sbjct: 61 MKMAKEAGVEVVTENSHTLYDLDKI 85
>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260, partial [Chlorella
variabilis]
Length = 491
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 64/135 (47%), Positives = 79/135 (58%), Gaps = 8/135 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFRKGLR+HDNP+L G +FILDPWF S +G+N+ +FLL+ L DLD + R
Sbjct: 4 WFRKGLRLHDNPALLAAAAGADHLCPIFILDPWFLKSDKIGVNRIQFLLESLTDLDASFR 63
Query: 80 KLNSRLFVIRG--------QPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
SRL V+RG Q A LP +EW T L FE D EP+ K RD + L
Sbjct: 64 ARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRDVAVRQLAEA 123
Query: 132 LNIEVIARVSHTLYD 146
+EV+A VSHTLYD
Sbjct: 124 AGVEVVAPVSHTLYD 138
>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
Length = 532
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD I
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 71
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
M + +E +EV+ SHTLYDLD++
Sbjct: 72 MKMAKEAGVEVVTENSHTLYDLDRI 96
>gi|406867153|gb|EKD20192.1| cryptochrome-2 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 650
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+LR L F ++ DP + + VG N+W+FL+ C +D+
Sbjct: 6 VIYWFRTDLRLHDSPALRAALDLNAEAFWPIWTWDPHYVYRARVGTNRWQFLIDCQDDVS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ KLN S+LF++R P + PKLFK WK T L FE+D + + + RD IM +E
Sbjct: 66 KSITKLNEKSKLFLMREAPQTLFPKLFKAWKITHLVFEKDTDAYARDRDAEIMRAAKEAG 125
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
+EVI R TL+D D+L +RG
Sbjct: 126 VEVIVRSGRTLWDSDELVKKNRG 148
>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
Length = 641
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 11/159 (6%)
Query: 1 MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNV 59
M P S PT ++ W R LR+HDNP+L+ L +TF +F DP +A V
Sbjct: 1 MPPQSAPT--------VIFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRV 52
Query: 60 GINKWRFLLQCLEDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF 117
G N+WRFLL+C DL + RKLN +L+V+R P + PKLFK W T L FE D + +
Sbjct: 53 GPNRWRFLLECQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDTDGY 112
Query: 118 GKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ RD+ I L E +EVI + TL+D D++ ++G
Sbjct: 113 ARERDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKG 151
>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
Length = 542
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 61/138 (44%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAG-SSNVGINKWRFLLQ 69
+S E +HWFRKGLR+HDN +L E G + +F+LD A S G + FLL+
Sbjct: 3 SSKEPSSIHWFRKGLRLHDNRALLEACNGTASLYPLFVLDSDPASPESRAGPLRTAFLLE 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L+DLD LR SRLFV+RG+P ++LP+LF+EW LTFE D EP + RD+ + +L
Sbjct: 63 SLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLA 122
Query: 130 RELNIEVIARVSHTLYDL 147
+E ++V+ R + TL +L
Sbjct: 123 KEAGVQVLIRGTSTLRNL 140
>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 11/159 (6%)
Query: 1 MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNV 59
M P S PT ++ W R LR+HDNP+L+ L +TF +F DP +A V
Sbjct: 1 MPPQSAPT--------VIFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRV 52
Query: 60 GINKWRFLLQCLEDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF 117
G N+WRFLL+C DL + RKLN +L+V+R P + PKLFK W T L FE D + +
Sbjct: 53 GPNRWRFLLECQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDTDGY 112
Query: 118 GKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ RD+ I L E +EVI + TL+D D++ ++G
Sbjct: 113 ARERDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKG 151
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 84/131 (64%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFRK LR+HDNP+L+ ++ + +FILDP++ +G ++RF+L+C++DLD +LR
Sbjct: 58 WFRKSLRLHDNPTLQRAVQLASELFPLFILDPYYINPDKIGFQRFRFMLECMKDLDHSLR 117
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
K S+L VI G+P ++L K WK + L FE+D + + + RD+ ++ + L ++
Sbjct: 118 KYQSKLLVIYGEPVNVLENCCKTWKCSYLCFEKDSDIYSRNRDEKVLQRMKGLGVQCFVE 177
Query: 140 VSHTLYDLDQL 150
HTLYDLD L
Sbjct: 178 SGHTLYDLDML 188
>gi|358368155|dbj|GAA84772.1| DNA photolyase [Aspergillus kawachii IFO 4308]
Length = 664
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 6/151 (3%)
Query: 9 NPNSTEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFL 67
+P ST ++ W R LR+HDNP+L+ L +TF +F DP +A VG N+WRFL
Sbjct: 5 SPPST---VIFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYRVRVGPNRWRFL 61
Query: 68 LQCLEDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+C DL + RKLN +L+V+R P + PKLFK W T L FE D + + + RD+ +
Sbjct: 62 LECQSDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDTDGYARERDETV 121
Query: 126 MTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ L +E +EVI + TL+D D++ ++G
Sbjct: 122 IKLAKEAGVEVIVKSGRTLFDSDEVVKHNKG 152
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera]
Length = 564
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 12/156 (7%)
Query: 7 PTNPN---STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------A 54
P +PN ++ + WFRKGLR+HDNP+L+ K VF++DP+F
Sbjct: 20 PNSPNPSMASGSSSLMWFRKGLRIHDNPALQHAAKESNCVYPVFVIDPYFMEPDPNAFSP 79
Query: 55 GSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
GSS G+N+ RFLL+ L DLD +LR+L SRL V++G P +++ + KEW+ L FE D
Sbjct: 80 GSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDT 139
Query: 115 EPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+P+ + D + IEV + VSHTL+D ++
Sbjct: 140 DPYYQALDIKVKNYASAAGIEVFSPVSHTLFDSAEI 175
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-AGSSNVGINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNPSL L +T V++LD F G+ ++G +WRFLLQ LEDLD
Sbjct: 6 IHLFRKGLRLHDNPSLLGALASSSTLYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDT 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
LR + SRLFV+ G A+IL +L +W T ++++ + EP+ D++I T+ +E ++
Sbjct: 66 RLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQT 125
Query: 137 IARVSHTLYDLDQLKPDSRG 156
+SHTLYD+ ++ + G
Sbjct: 126 YTCISHTLYDVKRIVKANGG 145
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-AGSSNVGINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNPSL L +T V++LD F G+ ++G +WRFLLQ LEDLD
Sbjct: 27 IHLFRKGLRLHDNPSLLGALASSSTLYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDT 86
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
LR + SRLFV+ G A+IL +L +W T ++++ + EP+ D++I T+ +E ++
Sbjct: 87 RLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQT 146
Query: 137 IARVSHTLYDLDQLKPDSRG 156
+SHTLYD+ ++ + G
Sbjct: 147 YTCISHTLYDVKRIVKANGG 166
>gi|350633368|gb|EHA21733.1| Hypothetical protein ASPNIDRAFT_184343 [Aspergillus niger ATCC
1015]
Length = 640
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 91/159 (57%), Gaps = 11/159 (6%)
Query: 1 MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNV 59
M P S PT +V W R LR+HDNP+L+ L +TF +F DP +A V
Sbjct: 1 MPPQSAPT--------VVFWHRTDLRLHDNPALQAALSLKPSTFIPIFTWDPHYAYRVRV 52
Query: 60 GINKWRFLLQCLEDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF 117
G N+WRFLL+C +DL + KLN +L+V+R P + PKLFK W T L FE D + +
Sbjct: 53 GPNRWRFLLECQKDLSQSYSKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDTDGY 112
Query: 118 GKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ RD+ + L +E +EVI + TL+D D++ ++G
Sbjct: 113 ARERDETVTKLAKEAGVEVIVKSGRTLFDSDEVVKHNKG 151
>gi|443692783|gb|ELT94302.1| hypothetical protein CAPTEDRAFT_40617, partial [Capitella teleta]
Length = 140
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 67/87 (77%)
Query: 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
+RFLLQ LEDLD LRKLNSRLFVIRGQP DI PKLF++W + L FEEDPEPFGK RD
Sbjct: 1 YRFLLQSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDPEPFGKERDS 60
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQL 150
+ T ++ IEVI + SHTL++L ++
Sbjct: 61 AVCTKSQDAGIEVIIKTSHTLFNLQKI 87
>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
Length = 540
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 66/85 (77%)
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLLQ LEDLD +LRKLNSRLFV+RGQP D+ P+LFKEW T LTFE D EPFGK RD I
Sbjct: 21 FLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 80
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
+ L +E +EV+ SHTLYDLD++
Sbjct: 81 IKLAKEAGVEVVVENSHTLYDLDRI 105
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 12/157 (7%)
Query: 2 SPLSTPTNP---NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---- 54
SP S NP +T + WFRKGLR+HDNP+L KG VF++DP +
Sbjct: 8 SPSSYRLNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDP 67
Query: 55 -----GSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109
GSS G+N+ RFLL+ L+DLD +L+KL SRL V +G+P ++L + +EWK L
Sbjct: 68 SAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLC 127
Query: 110 FEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYD 146
FE D +P+ + D + +EV + VSHTL++
Sbjct: 128 FEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFN 164
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 9/146 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLLQC 70
WFRKGLR+HDNPSL G VF+LDPWF GS+ VGIN+ +FLL+
Sbjct: 5 WFRKGLRLHDNPSLEAACHGSRNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQFLLES 64
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L+DLD NL S+L ++ G P ++P+L +W+ L FE D EP+ RD I +
Sbjct: 65 LQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFDTEPYALDRDAKIKEHAK 124
Query: 131 ELNIEVIARVSHTLYDLDQLKPDSRG 156
+ IE+ VSHT+++ D L + G
Sbjct: 125 DKGIELHCPVSHTIFNPDLLIAKNGG 150
>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
Length = 531
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 5/100 (5%)
Query: 56 SSNVGINKW-----RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110
S+ + W RFLLQ LEDLD +LRKLNSRLFV+RGQPAD+ P+LFKE K + TF
Sbjct: 17 SAEISCQNWEGKRGRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKECKFSTPTF 76
Query: 111 EEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
E D EPFGK RD IM L +E +EVI SHTLYDLD++
Sbjct: 77 EYDSEPFGKERDAVIMKLAKEAGVEVIVENSHTLYDLDRI 116
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 12/157 (7%)
Query: 2 SPLSTPTNP---NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---- 54
SP S NP +T + WFRKGLR+HDNP+L KG VF++DP +
Sbjct: 8 SPSSYRLNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDP 67
Query: 55 -----GSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109
GSS G+N+ RFLL+ L+DLD +L+KL SRL V +G+P ++L + +EWK L
Sbjct: 68 SAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLC 127
Query: 110 FEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYD 146
FE D +P+ + D + +EV + VSHTL++
Sbjct: 128 FEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFN 164
>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
Length = 418
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-AGSSNVGINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNPSL L + V++LD F G+ ++G +WRFLLQ LEDLD
Sbjct: 6 IHLFRKGLRLHDNPSLLGALASSSALYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDT 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+ + SRLFV+ G A+IL +L +W T ++++ + EP+ D++I T+ +E ++
Sbjct: 66 RLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQT 125
Query: 137 IARVSHTLYDLDQL 150
VSHTLYD+ ++
Sbjct: 126 YTCVSHTLYDVKRI 139
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 549
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---------GSSNVGINKWRFLLQC 70
WFRKG+R+HDNP+L KG VF++DP + GSS G+N+ RFLL+
Sbjct: 10 WFRKGIRIHDNPALEYAAKGAKFLYPVFVIDPHYMEPDPSAFSLGSSRAGLNRIRFLLES 69
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD+NL+KL SRL V+ G+P ++L + KEW L FE D +P+ + D +
Sbjct: 70 LVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDTDPYYQALDIRVQNHAS 129
Query: 131 ELNIEVIARVSHTLYD 146
IEV + VSHTL++
Sbjct: 130 AAGIEVFSPVSHTLFN 145
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---------GSSNVGINKWRFLLQC 70
WFRKG+R+HDNP+L KG VF++DP + GSS G+N+ RFLL+
Sbjct: 10 WFRKGIRIHDNPALEYAAKGAKFLYPVFVIDPHYMEPDPSAFSLGSSRAGLNRIRFLLES 69
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD+NL+KL SRL V+ G+P ++L + KEW L FE D +P+ + D +
Sbjct: 70 LVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDTDPYYQALDIRVQNHAS 129
Query: 131 ELNIEVIARVSHTLYD 146
IEV + VSHTL++
Sbjct: 130 AAGIEVFSPVSHTLFN 145
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 9/140 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---------GSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L+ K VF++DP+F GSS G+N+ RFLL+
Sbjct: 10 WFRKGLRIHDNPALQHAAKESNCVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIRFLLES 69
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD +LR+L SRL V++G P +++ + KEW+ L FE D +P+ + D +
Sbjct: 70 LVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQALDIKVKNYAS 129
Query: 131 ELNIEVIARVSHTLYDLDQL 150
IEV + VSHTL+D ++
Sbjct: 130 AAGIEVFSPVSHTLFDSAEI 149
>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
Length = 556
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV-GINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNP+L L+ V+ILD F SS+V G +W FLLQ +EDL
Sbjct: 6 IHIFRKGLRLHDNPTLVAALETSDIIYPVYILDKNFMTSSSVIGSKRWNFLLQSIEDLHC 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
NL+KLNS LFVI+G +L + ++W T +TF+ + EP+ K D+ I + +EL +V
Sbjct: 66 NLQKLNSCLFVIQGDYQSVLREHVQKWHITQVTFDLEIEPYYKGMDERIRAMGQELGFDV 125
Query: 137 IARVSHTLYDLDQL 150
+++V+HTLYD+ +
Sbjct: 126 VSKVAHTLYDVKSI 139
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
Length = 537
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---------GSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L KG VF++DP + GSS G+N+ RFLL+
Sbjct: 10 WFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLES 69
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L+DLD +L+KL SRL V +G+P ++L + +EWK L FE D +P+ + D +
Sbjct: 70 LKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYAS 129
Query: 131 ELNIEVIARVSHTLYD 146
+EV + VSHTL++
Sbjct: 130 STGVEVFSPVSHTLFN 145
>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 86/144 (59%), Gaps = 9/144 (6%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---------GSSNVGIN 62
+T + WFRKGLR+HDNP+L KG VF++DP + GSS G+N
Sbjct: 2 ATRSGSLIWFRKGLRVHDNPALEFASKGSEFMFPVFVIDPHYMESDPSAFSPGSSRAGVN 61
Query: 63 KWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
+ RFLL+ L+DLD +L+KL SRL V++G+P ++L + +EWK L FE D +P+ K D
Sbjct: 62 RIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYDTDPYYKALD 121
Query: 123 QNIMTLCRELNIEVIARVSHTLYD 146
+ +EV + VSHTL++
Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFN 145
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max]
Length = 535
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L +G + VF++DP F GSS G+N+ +FLL+C
Sbjct: 10 WFRKGLRIHDNPALEVASRGASHLYPVFVIDPHFMEPDPNSSAPGSSRAGLNRIKFLLEC 69
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD+NL+ L SRL +++G PA+++ + KE L FE D EP+ + D +
Sbjct: 70 LVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFEYDTEPYYQALDVKVKNFAL 129
Query: 131 ELNIEVIARVSHTLYD 146
IEV + VSHTL++
Sbjct: 130 AAGIEVFSPVSHTLFN 145
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-AGSSNVGINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNPSL L + V++LD F G+ ++G +WRFLLQ LEDLD
Sbjct: 6 IHLFRKGLRLHDNPSLLGALASSSALYPVYVLDRVFLQGAMHMGALRWRFLLQSLEDLDT 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+ + SRLFV+ G A+IL +L +W T ++++ + EP+ D++I T+ +E ++
Sbjct: 66 RLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQENGLQT 125
Query: 137 IARVSHTLYDLDQLKPDSRG 156
VSHTLYD+ ++ + G
Sbjct: 126 YTCVSHTLYDVKRIVKANGG 145
>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 655
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 89/147 (60%), Gaps = 3/147 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
++ +++WFR LR+HD+P+L+ L ++ DP + + VG N+W++LL C
Sbjct: 2 SKPRVIYWFRTDLRLHDSPALKAALDLNPACLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+DL ++ KLN S+LFVIR P + PKLFK WK T + FE+D + + + RD ++ +
Sbjct: 62 DDLSKSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHMVFEKDTDAYARERDDKVLEIA 121
Query: 130 RELNIEVIARVSHTLYDLDQLKPDSRG 156
R+ +EV+ + TLYD D+L + G
Sbjct: 122 RKSGVEVVVKTGRTLYDPDELVKQNHG 148
>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
Length = 655
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L T ++ DP + + VG N+W++LL C DL
Sbjct: 6 VIYWFRTDLRLHDSPALKAALDLNPTCLYPIWTWDPHYVYRARVGPNRWQYLLDCQNDLS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ KLN S+LFVIR P + PKLFK WK T L FE+D + + + RD ++ + ++
Sbjct: 66 KSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHLVFEKDTDAYARERDDKVLEIAKKAG 125
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
+EV+ + TLYD D+L + G
Sbjct: 126 VEVVVKTGRTLYDPDELVMQNHG 148
>gi|396460940|ref|XP_003835082.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
gi|312211632|emb|CBX91717.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
Length = 709
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 90/147 (61%), Gaps = 3/147 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
++ +++WFR LR+HD+P+L+ L ++ DP + + VG N+W++LL C
Sbjct: 48 SKPRVIYWFRTDLRLHDSPALKAALDLKPDCLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 107
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+DL ++ K+N S+LFVIR P + PKLFK W+ T L FE+D + +G+ RD+ +M L
Sbjct: 108 KDLSKSITKVNPQSKLFVIREAPQTLFPKLFKAWQITHLVFEKDTDAYGRERDEQVMELA 167
Query: 130 RELNIEVIARVSHTLYDLDQLKPDSRG 156
+ +EV+ + TLYD D+L + G
Sbjct: 168 KTAGVEVVVKTGRTLYDPDELVRQNHG 194
>gi|388582367|gb|EIM22672.1| hypothetical protein WALSEDRAFT_53945 [Wallemia sebi CBS 633.66]
Length = 554
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/141 (38%), Positives = 86/141 (60%), Gaps = 1/141 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
++HWFR LR+HD P+L +GL+ F V+ DP+F VG N+++FL++ + +LD
Sbjct: 5 VLHWFRTDLRLHDAPALVKGLELKPEAFFPVWAWDPYFNFDCPVGPNRYKFLIETMNELD 64
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L + ++L V R PAD+ P LFK+W T L +E+DP P+ RD+ I + + +E
Sbjct: 65 GKLNDMGNKLHVFRADPADLFPALFKQWNITHLVYEKDPAPYAVERDEKIKQIATDAKVE 124
Query: 136 VIARVSHTLYDLDQLKPDSRG 156
V+ HTLYD+D + ++G
Sbjct: 125 VLDITGHTLYDIDAVIEKNKG 145
>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
gi|122106526|sp|Q17DK5.1|CRY1_AEDAE RecName: Full=Cryptochrome-1
gi|108880271|gb|EAT44496.1| AAEL004146-PA [Aedes aegypti]
Length = 545
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 6/139 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLK----GCTTFRC--VFILDPWFAGSSNVGINKWRFLLQCL 71
+ WFR GLR+HDNPSL E L+ G + R +FI D AG+ VG N+ +FLL+ L
Sbjct: 6 ILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLESL 65
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
DLD LR++ +L+V +G +++ +LF+E L FE+D EP K RD I LCR
Sbjct: 66 ADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLCRM 125
Query: 132 LNIEVIARVSHTLYDLDQL 150
++++ + +VSHTL+D Q+
Sbjct: 126 MDVKCVEKVSHTLWDPQQI 144
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS-NVGINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNP+L L+ T V++LD F S+ ++G +W FLLQ LEDL
Sbjct: 6 IHLFRKGLRLHDNPTLLAALESSETIYPVYVLDRRFLASAMHIGALRWHFLLQSLEDLHK 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
NL +L +RL VI+G+ +L ++W T +T + + EPF K + NI L EL EV
Sbjct: 66 NLSRLGARLLVIQGEYESVLRDHVQKWNITQVTLDAEMEPFYKEMEANIRRLGAELGFEV 125
Query: 137 IARVSHTLYDLDQL 150
++RV H+LYD ++
Sbjct: 126 LSRVGHSLYDTKRI 139
>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
Length = 626
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
T +++WFR LR+HD+P+L L+ VF DP + + G+N+W++LL C
Sbjct: 2 TGARVIYWFRTDLRLHDSPALTAALELEPAVLWPVFTWDPHYVYRARGGLNRWQYLLDCQ 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
DL ++ KLN S+LFV+R P + PKLFK WK T L FE+D + +G+ RD ++
Sbjct: 62 NDLSASITKLNPKSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVVVAAA 121
Query: 130 RELNIEVIARVSHTLYDLDQL 150
RE +EVI R TL+D D +
Sbjct: 122 REAGVEVIMRSGRTLWDSDDI 142
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV-GINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNP+L L+ V+ILD F SS+V G +W F LQ +EDL
Sbjct: 6 IHIFRKGLRLHDNPTLVTALETSDVVYPVYILDRNFMTSSSVIGSKRWNFFLQSIEDLHC 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
NL+KLNS LFVI+G +L + ++W T +TF+ + EP+ K D+ I + +EL EV
Sbjct: 66 NLQKLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQELGFEV 125
Query: 137 IARVSHTLYDLDQL 150
++ V+HTLYD+ ++
Sbjct: 126 VSMVAHTLYDIKKI 139
>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
Length = 522
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 14 EKH-MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV--GINKWRFLLQC 70
E+H +HWFRKGLR HDNPSL L+ VF++D F + G N+WRF+++C
Sbjct: 5 EQHNTIHWFRKGLRFHDNPSLLHALRTSHHVYPVFVMDLDFMKDFKIRSGANQWRFVIEC 64
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L+DLD LR RLFV RG + F++W T LT + + E + + RD + +
Sbjct: 65 LQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKIAV 124
Query: 131 ELNIEVIARVSHTLYDLDQL 150
+ +EV+ V+HTLY++D++
Sbjct: 125 DEGVEVVNYVAHTLYNIDKI 144
>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
Length = 685
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L + F +F DP + + G+N+W+FLL C DL
Sbjct: 58 VIYWFRTDLRLHDSPALKAALDLDPSVFWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLS 117
Query: 76 INLRKLNS--RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ K+NS +LFV+R P + PKLFK WK T + FE+D + + + RD + ++
Sbjct: 118 KSITKVNSNSKLFVLREAPQTLFPKLFKAWKVTHIVFEKDTDSYARERDSIVTQAAKDAG 177
Query: 134 IEVIARVSHTLYDLDQL 150
+EVI R TL+D DQ+
Sbjct: 178 VEVIIRSGRTLWDSDQI 194
>gi|451847270|gb|EMD60578.1| hypothetical protein COCSADRAFT_244496 [Cochliobolus sativus
ND90Pr]
Length = 654
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
T+ +++WFR LR+HD+P+L+ L V+ DP + + VG N+W++L+ C
Sbjct: 2 TKSRVIYWFRTDLRLHDSPALKAALDLDPECLYPVWTWDPHYVYRARVGPNRWQYLIDCQ 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
DL ++ KLN S+LF+IR P + PKLFK W T L FE+D + + + RD +M +
Sbjct: 62 NDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDAYARERDAKVMEIA 121
Query: 130 RELNIEVIARVSHTLYDLDQLKPDSRG 156
++ ++VI + TLYD D L ++ G
Sbjct: 122 KQAGVDVITKTGRTLYDPDDLVKNNNG 148
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
Length = 536
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---------GSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L KG VF++DP + GS+ G+N+ +FLL+
Sbjct: 10 WFRKGLRIHDNPALEYASKGSNFVYPVFVIDPHYMKPDPNAFSPGSTRAGLNRIKFLLES 69
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD++L+KL S+L V++G+P+ +L KEW + FE D +P+ + D +
Sbjct: 70 LADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYDTDPYYQALDVKVKDFAS 129
Query: 131 ELNIEVIARVSHTLYD 146
+ IEV + VSHTL++
Sbjct: 130 SVGIEVFSPVSHTLFN 145
>gi|451997801|gb|EMD90266.1| hypothetical protein COCHEDRAFT_1139413, partial [Cochliobolus
heterostrophus C5]
Length = 650
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
T +++WFR LR+HD+P+L+ L V+ DP + + VG N+W++L+ C
Sbjct: 2 TRSRVIYWFRTDLRLHDSPALKAALDLDPECLYPVWTWDPHYVYRARVGPNRWQYLIDCQ 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
DL ++ KLN S+LF+IR P + PKLFK W T L FE+D + + + RD +M +
Sbjct: 62 NDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDAYARERDAKVMEIA 121
Query: 130 RELNIEVIARVSHTLYDLDQLKPDSRG 156
++ ++VI + TLYD D L ++ G
Sbjct: 122 KQAGVDVITKTGRTLYDPDDLVKNNNG 148
>gi|398412077|ref|XP_003857369.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
gi|339477254|gb|EGP92345.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
Length = 670
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 87/137 (63%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L F ++ D + + VG+N+W+FL+ C+ D+
Sbjct: 6 VLYWFRTDLRLHDSPALKSALDLNPEAFYPIWCWDSHYVYHARVGVNRWQFLIDCMNDVS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ K+N S+LFV+R +LPKLFK WK + L FE+D + +G+ RD+ ++ RE
Sbjct: 66 QSITKINKKSQLFVLREPAVTLLPKLFKAWKISHLVFEKDTDAYGRQRDEQVLESAREAG 125
Query: 134 IEVIARVSHTLYDLDQL 150
+EVI + TL+D D++
Sbjct: 126 VEVITKFGRTLWDSDEI 142
>gi|342883710|gb|EGU84160.1| hypothetical protein FOXB_05337 [Fusarium oxysporum Fo5176]
Length = 637
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L +F DP + + G+N+W+FLL C DL
Sbjct: 6 VIYWFRTDLRLHDSPALKAALDLDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ ++N S+LFV+R P + PKLFK WK T L FE+D + +G+ RD ++ ++
Sbjct: 66 RSISQVNPKSKLFVLREAPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDSVVVQAAKDAG 125
Query: 134 IEVIARVSHTLYDLDQL 150
+EV+ R TL+D DQ+
Sbjct: 126 VEVLVRSGRTLWDSDQI 142
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
Length = 536
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTT-FRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR GLR+HDNPSL L+ + F +FI D AG+ VG N+ R+LL+ L+DLD
Sbjct: 6 VLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLDK 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+K RL +++G+P+ + +L++E+ L FE+D EP + RD+++ T CRE+ +
Sbjct: 66 QFKKYGGRLLLVKGKPSAVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTACREIGVTC 125
Query: 137 IARVSHTLYDLDQL 150
VSHTL++ D +
Sbjct: 126 REHVSHTLWEPDTV 139
>gi|358394356|gb|EHK43749.1| DNA photolyase [Trichoderma atroviride IMI 206040]
Length = 625
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L +F DP + + G+N+W+FLL C DL
Sbjct: 6 VIYWFRTDLRLHDSPALQAALDLEPEVLWPIFTWDPHYVYKARGGVNRWQFLLDCQNDLS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ KLN S+LFV+R P + PKLFK WK T L FE+D + +G+ RD+ + +E
Sbjct: 66 DSITKLNKNSKLFVLREGPQTLFPKLFKAWKPTHLVFEKDTDAYGRSRDEAVAKAAQEAG 125
Query: 134 IEVIARVSHTLYDLD 148
++VI R TL+D D
Sbjct: 126 VKVIIRSGRTLWDSD 140
>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
Length = 525
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKG-CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR GLR+HDNPSL L+ F +F+ D AG+ VG N+ R+LL+ LEDLD
Sbjct: 6 VLWFRHGLRLHDNPSLHAALEDRSVPFFPIFVFDGETAGTKLVGYNRMRYLLEALEDLDN 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+K +L +++G+P+D+ +L++E+ L FE+D EP + RD + + CRE+ +
Sbjct: 66 QFKKYGGKLIMLKGKPSDVFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSACREIGVAC 125
Query: 137 IARVSHTLYDLDQL 150
VSHTL++ D +
Sbjct: 126 REYVSHTLWEPDTV 139
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---------GSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L KG VF++DP + GSS GIN+ RFLL+
Sbjct: 11 WFRKGLRVHDNPALDYASKGSKFVYPVFVIDPHYMEPDPNAFSPGSSRAGINRIRFLLES 70
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD++L+KL S+L V+RG+P+ +L + K W L FE D + + + D +
Sbjct: 71 LVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDTDSYYQALDAKVKEYAS 130
Query: 131 ELNIEVIARVSHTLYD 146
IEV + VSHTL++
Sbjct: 131 SARIEVFSPVSHTLFN 146
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 78/136 (57%), Gaps = 9/136 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L KG VF++DP + GS G+N+ RFLL+
Sbjct: 11 WFRKGLRIHDNPALEYASKGSDFVYPVFVIDPHYMEPDPKAFSPGSRLAGLNRIRFLLES 70
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DLD +L+KL SRL ++RG+P +L + KEW L FE D +P + D +
Sbjct: 71 LVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYDTDPHYQALDIRVKEYAS 130
Query: 131 ELNIEVIARVSHTLYD 146
IEV + VSHTL++
Sbjct: 131 AAGIEVFSPVSHTLFN 146
>gi|403177785|ref|XP_003336224.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173202|gb|EFP91805.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 731
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L + L+ G F V+ DP++ ++ VG N+W+FLL + DL
Sbjct: 100 LLYWFRTDLRLHDSPALMKALELGPVEFYPVWCWDPYYVYNTPVGPNRWQFLLDSMNDLS 159
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP-FGKVRDQNIMTLCREL 132
++ ++N S+LFVIRG+P+ LP ++++W T L FEED + + RDQ+I+ ++
Sbjct: 160 KSISRINGRSKLFVIRGEPSITLPYIWRQWGITHLAFEEDDDKRHSQPRDQSIIKAAKDA 219
Query: 133 NIEVIARVSHTLYDLDQLKPDSRG 156
+E++ HTLY +Q+ ++G
Sbjct: 220 GVEILTSPGHTLYPQEQVMAAAKG 243
>gi|340518659|gb|EGR48899.1| DNA photolyase [Trichoderma reesei QM6a]
Length = 628
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
T+ +++WFR LR+HD+P+L+ L ++ DP + + VG+N+++FLL C
Sbjct: 2 TKPRVIYWFRTDLRLHDSPALQAALDLEPEALWPIWTWDPHYVYKARVGVNRFQFLLDCQ 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
DL ++ KLN S+LFV+R P + PKLF+ WK T L FE+D + + + RD+ ++
Sbjct: 62 NDLSQSITKLNKKSKLFVLREGPQTLFPKLFEAWKPTHLVFEKDTDTYARTRDEAVVKAA 121
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+E +EVI R TL+D D++
Sbjct: 122 KEAGVEVITRSGRTLWDSDEI 142
>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
Length = 691
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L ++ D + + VG+N+W+FL+ C D+
Sbjct: 6 VIYWFRTDLRLHDSPALKAALDLKPEVLYPIWCWDSHYVYRARVGVNRWQFLIDCQNDVS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ KLN S+LFV+R +LPKLFK WK T L FE+D + + + RD+ +M + E
Sbjct: 66 ESITKLNQKSKLFVLREPAVTLLPKLFKAWKITHLVFEKDTDAYARERDEKVMHMAGEAG 125
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
++VI +V TLYD D++ ++ G
Sbjct: 126 VKVIVKVGRTLYDPDEIVKNNGG 148
>gi|453088843|gb|EMF16883.1| FAD_binding_7-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 637
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
++ +++WFR LR+HD+P+L+ L ++ D + + VG+N+W+FL+ C
Sbjct: 2 SKPRILYWFRTDLRLHDSPALKAALDLQPEVLYPIWCWDSHYVYRARVGVNRWQFLIDCQ 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
D+ ++ KLN S+LFV+R +LPKLFK+WK T L FE+D + + + RD+ ++ +
Sbjct: 62 NDVSKSITKLNKKSKLFVLREPAVTLLPKLFKKWKITHLVFEKDTDAYARERDEQVVRVA 121
Query: 130 RELNIEVIARVSHTLYDLDQL 150
E +EVI +V TLYD D L
Sbjct: 122 GEAGVEVIVKVGRTLYDPDAL 142
>gi|408391364|gb|EKJ70743.1| hypothetical protein FPSE_09113 [Fusarium pseudograminearum CS3096]
Length = 637
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L F +F DP + + G+N+W+FLL C DL
Sbjct: 6 VIYWFRTDLRLHDSPALKAALDLDPAVFWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ K+N S+LFV+R P + PKLFK W+ T + FE+D + + + RD + ++
Sbjct: 66 KSITKVNPNSKLFVLREAPQTLFPKLFKAWEVTHIVFEKDTDSYARERDSIVTQAAKDAG 125
Query: 134 IEVIARVSHTLYDLDQL 150
+EVI R TL+D DQ+
Sbjct: 126 VEVIIRSGRTLWDSDQI 142
>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L +F DP + + G+N+W+FLL C DL
Sbjct: 6 VIYWFRTDLRLHDSPALKAALDLDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ KLN S+L ++R P + PKLFK WK T L FE+D + + + RD + +E
Sbjct: 66 KSITKLNPKSKLLLLREAPQTLFPKLFKAWKVTHLVFEKDTDSYARERDDVVTRAAKEAG 125
Query: 134 IEVIARVSHTLYDLDQL 150
+EVI R TL+D DQ+
Sbjct: 126 VEVIVRTGRTLWDSDQI 142
>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
Length = 517
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 9/153 (5%)
Query: 3 PLSTPT--NPNSTEKHMVHWFR-KGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV 59
PL+T T S VHWFR LR+HDNP+ + +K F+ VFI+DPWF + N
Sbjct: 6 PLATQTTFQGQSIPDTTVHWFRLDALRLHDNPAFVDAVKTDGNFKAVFIIDPWFNANYNN 65
Query: 60 G---INKWRFLLQCLEDLDINLRK--LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
G +N WRFLL+ L DLD L+K +RL V+ GQP ILP+L+K+W +TF+
Sbjct: 66 GGPQVNVWRFLLEALHDLDSRLQKKPYCARLNVLYGQPTMILPELYKKWNVKKITFQASQ 125
Query: 115 EPFGKVRDQNIM-TLCRELNIEVIARVSHTLYD 146
++ I+ L + N++ ++ SHTLYD
Sbjct: 126 VSSESMKHDGIIKILSEQQNVQAVSYFSHTLYD 158
>gi|452848446|gb|EME50378.1| hypothetical protein DOTSEDRAFT_145202, partial [Dothistroma
septosporum NZE10]
Length = 640
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/142 (38%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
++ +++WFR LR+HD+P+L+ L K F ++ D + + VG+N+++FL+ C
Sbjct: 2 SKPRVIYWFRTDLRLHDSPALKAALDLKPDVLFP-IWCWDSHYVYRARVGVNRFQFLIDC 60
Query: 71 LEDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
DL ++ KLN S+LFV+R +LPKLFKEWK T L FE+D + + K RDQ ++ +
Sbjct: 61 QNDLSKSITKLNKKSKLFVMREPAVTLLPKLFKEWKITHLVFEKDTDAYAKERDQQVVKM 120
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
+ +EVI + TL+D D+L
Sbjct: 121 AEDAGVEVIVKTGRTLWDPDEL 142
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus]
Length = 534
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTT-FRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR GLR+HDNPSL L+ ++ F +FI D AG+ VG N+ R+LL+ L DLD
Sbjct: 6 VIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYNRMRYLLEALNDLDQ 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
RK +L +I+G+P I +L++E+ L FE+D EP + RD ++ LCR++ +
Sbjct: 66 QFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRDIGVSC 125
Query: 137 IARVSHTLYDLDQL 150
V+HTL++ D +
Sbjct: 126 REHVAHTLWNPDTV 139
>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
Length = 684
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
S +++WFR LR+HD+P+L+ L K F V+ DP + VG+N++RFLL+
Sbjct: 2 SKHVRVLYWFRTDLRLHDSPALQAALDLKPAALFP-VWCWDPNYVYKHRVGVNRFRFLLE 60
Query: 70 CLEDLDINLR--KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
+ L N+ + NS+L V+RG+P ++LP+L+K W T L FE+DP +G+ RDQ I+
Sbjct: 61 SMIALSKNITSTQSNSQLLVVRGEPTELLPELWKRWSITHLVFEKDPSAYGRRRDQLILE 120
Query: 128 LCRELNIEVIARVSHTLYDLDQLKPDSRG 156
+ N++V+A H LYD +Q+ ++G
Sbjct: 121 AAEKSNVKVVAVQGHHLYDPEQVVNKNKG 149
>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
Length = 501
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 6/144 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTT----FRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++HWFR LR+HDN +LR + R ++++DP + VG N+ RFL Q L+
Sbjct: 7 VIHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDPDI--KNRVGCNRLRFLFQSLK 64
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+LD +LRK+N+RL+VI+G+ + LPKLF EW LT + D + +D+ I C
Sbjct: 65 NLDTSLRKINTRLYVIKGKAIECLPKLFDEWHVKFLTLQVDIDADLVKQDEVIEEFCEAN 124
Query: 133 NIEVIARVSHTLYDLDQLKPDSRG 156
NI V+ R+ HT+YD + + + G
Sbjct: 125 NIFVVKRMQHTVYDFNSVVKKNNG 148
>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
Length = 613
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 85/137 (62%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++W R LR+HD+P+L L + F ++ DP + + VG N+W+FLL+C DL
Sbjct: 5 VLYWHRTDLRLHDSPALHAALALNPSIFIPIWTWDPHYVYRTRVGPNRWKFLLECQSDLS 64
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LN RL+V+R P +LPKL+K+W+ T L FE+D + + + RD+ ++ + R+
Sbjct: 65 AAYTTLNPKQRLWVVREAPQSVLPKLWKKWQITHLVFEQDTDAYARDRDEAVLRMARDAG 124
Query: 134 IEVIARVSHTLYDLDQL 150
+EVI ++ TL+D D+L
Sbjct: 125 VEVIVQMGRTLFDPDEL 141
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
Length = 548
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
V WFR GLR+HDNPSL L KG F VFI D AG+ VG N+ R+LL+ LEDLD
Sbjct: 6 VLWFRHGLRLHDNPSLHSALEEKGFPFFP-VFIFDGETAGTKVVGYNRMRYLLEALEDLD 64
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L+K RL +I+G+P + +L++E+ L FE+D EP + RD ++ + C+E+ +
Sbjct: 65 NQLKKHGGRLIMIKGKPNVVFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKSACKEIGVV 124
Query: 136 VIARVSHTLYDLDQL 150
VSHTL++ D +
Sbjct: 125 CKEHVSHTLWEPDTV 139
>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
Length = 1229
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 85/137 (62%), Gaps = 7/137 (5%)
Query: 25 LRMHDNPSLREGLKGCTTFRCVFIL---DPWFAGSSNVGINKWRFLLQCLEDLDINLRKL 81
LR+HD+P+L+ L C++ + DP + + VG N+W++L+ C DL ++ KL
Sbjct: 581 LRLHDSPALKAALD--LKPECLYPIWTWDPHYVYRARVGSNRWQYLIDCQNDLSQSITKL 638
Query: 82 N--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
N S+LF+IR P + PKLFK WK T L FE+D + + + RD+ +M + +E +EV+ +
Sbjct: 639 NPKSKLFLIREAPQTLFPKLFKAWKITHLVFEKDTDAYARERDEKVMEIAKEAGVEVVIK 698
Query: 140 VSHTLYDLDQLKPDSRG 156
V TLYD D+L ++ G
Sbjct: 699 VGRTLYDPDELVKENNG 715
>gi|402076336|gb|EJT71759.1| cryptochrome-1 [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 661
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
++ +++WFR LR+HD+P+L+ L +F DP + + G+N+W+FLL C
Sbjct: 2 SKARVIYWFRTDLRLHDSPALQAALDLDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQ 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
DL ++ KLN S+LFV+R P + PKLFK W T + FE+D + + + RD +
Sbjct: 62 NDLSASINKLNPKSKLFVLREAPQTLFPKLFKAWDVTHIVFEKDTDSYARRRDAVVTQAA 121
Query: 130 RELNIEVIARVSHTLYDLDQL 150
R+ + VI R TL+D D++
Sbjct: 122 RDAGVRVITRCGRTLWDSDRV 142
>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
Length = 628
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
+T +++WFR LR+HD+P+L L +F DP + + G+N+W+FLL C
Sbjct: 2 ATGPRVIYWFRTDLRLHDSPALAAALALDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDC 61
Query: 71 LEDLDINLRKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
DL ++ KLNSR LFV+R P + PKLFK WK T L FE+D + + + RD+ +M
Sbjct: 62 QNDLSESITKLNSRSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDAYARERDEVVMRA 121
Query: 129 CRELNIEVIARVSHTLYDLD 148
E +EVI + TL+D D
Sbjct: 122 ASEAGVEVIVKSGRTLWDSD 141
>gi|389622365|ref|XP_003708836.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|351648365|gb|EHA56224.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|440473506|gb|ELQ42297.1| cryptochrome-1 [Magnaporthe oryzae Y34]
gi|440489726|gb|ELQ69353.1| cryptochrome-1 [Magnaporthe oryzae P131]
Length = 679
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L +F DP + S G+N+W++LL C DL
Sbjct: 6 VIYWFRTDLRLHDSPALQAALDLDPAVLWPIFTWDPHYVYRSRGGLNRWQYLLDCQNDLS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ LN S+LFV+R P + PKLFK WK T L FE+D + + + RD+ + +
Sbjct: 66 ASITNLNPRSKLFVLREAPQSLFPKLFKAWKVTHLVFEKDTDAYARQRDEVVKKAAQAAG 125
Query: 134 IEVIARVSHTLYDLDQL 150
++VI R TL+D D +
Sbjct: 126 VKVITRYGRTLWDSDAI 142
>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
Length = 542
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+T V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLL 61
Query: 69 QCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+D+D L+ RL V G+PA I +L ++ + + E+D EP RD+NI
Sbjct: 62 DSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDENI 121
Query: 126 MTLCRELNIEVIARVSHTLYD 146
+LCREL+I+ + +VSHTL+D
Sbjct: 122 RSLCRELSIDFVEKVSHTLWD 142
>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
gi|74960862|sp|O77059.1|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
Full=Blue light photoreceptor
gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
Length = 542
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+T V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLL 61
Query: 69 QCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+D+D L+ RL V G+PA I +L ++ + + E+D EP RD++I
Sbjct: 62 DSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121
Query: 126 MTLCRELNIEVIARVSHTLYD 146
+LCRELNI+ + +VSHTL+D
Sbjct: 122 RSLCRELNIDFVEKVSHTLWD 142
>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
Length = 542
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+T V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLL 61
Query: 69 QCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+D+D L+ RL V G+PA I +L ++ + + E+D EP RD++I
Sbjct: 62 DSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121
Query: 126 MTLCRELNIEVIARVSHTLYD 146
+LCRELNI+ + +VSHTL+D
Sbjct: 122 RSLCRELNIDFVEKVSHTLWD 142
>gi|406855882|pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
gi|406855883|pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+T V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLL 61
Query: 69 QCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+D+D L+ RL V G+PA I +L ++ + + E+D EP RD++I
Sbjct: 62 DSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121
Query: 126 MTLCRELNIEVIARVSHTLYD 146
+LCRELNI+ + +VSHTL+D
Sbjct: 122 RSLCRELNIDFVEKVSHTLWD 142
>gi|358385715|gb|EHK23311.1| putative photolyase class 1 [Trichoderma virens Gv29-8]
Length = 627
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L +F DP + + G+N+W+FLL C DL
Sbjct: 6 VIYWFRTDLRLHDSPALQAALDLEPEVLWPIFTWDPHYVYKARGGVNRWQFLLDCQNDLS 65
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
++ KLN S+LFV+R P +LPKLFK WK T L FE+D + + + RD+ + +
Sbjct: 66 QSITKLNKNSKLFVLREGPQTLLPKLFKAWKPTHLVFEKDTDAYARSRDEAVAKAAKAAG 125
Query: 134 IEVIARVSHTLYDLDQL 150
+EVI R TL+D D +
Sbjct: 126 VEVIIRPGRTLWDSDDI 142
>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
Length = 542
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+T V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLL 61
Query: 69 QCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+D+D L+ RL V G+PA+I +L ++ + + E+D EP RD++I
Sbjct: 62 DSLQDIDDQLQAATDGRGRLLVFEGEPANIFRRLHEQVRLHRICIEQDCEPIWNDRDESI 121
Query: 126 MTLCRELNIEVIARVSHTLYD 146
LCRELNI+ + +VSHTL+D
Sbjct: 122 RFLCRELNIDFVEKVSHTLWD 142
>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
Length = 608
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 82/138 (59%), Gaps = 7/138 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKG-CTT------FRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
WFR GLR+HDNPSL E LK C + VFI D AG+ VG N+ +FLL+ L
Sbjct: 69 WFRHGLRLHDNPSLLEALKSDCQSSNEPVKLFPVFIFDGESAGTRVVGYNRMKFLLESLA 128
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DLD R+L +L V RG +L +LF+E L FE+D EP + RD+ + LC +
Sbjct: 129 DLDRQFRELGGQLLVFRGDSETVLRRLFEELNIKKLCFEQDCEPIWRERDERVTKLCETM 188
Query: 133 NIEVIARVSHTLYDLDQL 150
+++ + VSHTL++ +++
Sbjct: 189 DVKCVENVSHTLWNPNEV 206
>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
Length = 433
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 17/146 (11%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLLQC 70
WFRKGLR+HDNPSL G VF+LDPWF GS+ VGIN+ +FLL+
Sbjct: 5 WFRKGLRLHDNPSLEAACHGSRNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQFLLES 64
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L+DLD NL S+L ++ G P +W+ L FE D EP+ RD I +
Sbjct: 65 LQDLDRNLSSRGSKLLLVHGNPI--------QWRIRKLCFEFDTEPYALDRDAKIKEHAK 116
Query: 131 ELNIEVIARVSHTLYDLDQLKPDSRG 156
+ IE+ VSHT+++ D L + G
Sbjct: 117 DKGIELHCSVSHTIFNPDLLIAKNGG 142
>gi|343429136|emb|CBQ72710.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 684
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 5/149 (3%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
S +++WFR LR+HD+P+L+ L K F V+ DP + VGIN++RFLL+
Sbjct: 2 SKAARVLYWFRTDLRLHDSPALQAALDLKPAALFP-VWCWDPNYVYKHRVGINRFRFLLE 60
Query: 70 CLEDLDINLRKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
+ L N+ S+ L V+RG+P ++LP+L+K W T L E+DP +G+ RD+ I
Sbjct: 61 SMTALSKNITSTQSKSQLLVVRGEPTELLPELWKRWNITHLVIEKDPSAYGRRRDRLIRE 120
Query: 128 LCRELNIEVIARVSHTLYDLDQLKPDSRG 156
++ N+EV+A H LYD +++ ++G
Sbjct: 121 AAKKSNVEVVAVQGHHLYDPEEVVKRNKG 149
>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
gi|205696380|sp|Q7PYI7.4|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
Length = 545
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKG--------CTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
+ WFR GLR+HDNPSL E LK +FI D AG+ VG N+ +FLL+
Sbjct: 6 ILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLLE 65
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L DLD R L +L V RG +L +LF+E L +E+D EP K RD + LC
Sbjct: 66 SLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCEPIWKERDDAVAKLC 125
Query: 130 RELNIEVIARVSHTLYD 146
R +++ + VSHTL++
Sbjct: 126 RTMDVRCVENVSHTLWN 142
>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
Length = 542
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 8/142 (5%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGL----KGCTTFRCVFILDPWFAGSSNVGINKWRFL 67
+T V WFR GLR+HDNP+L L +G VFI D AG+ NVG N+ RFL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIAIIP-VFIFDGESAGTKNVGYNRMRFL 60
Query: 68 LQCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
L L+D+D L+ RL V G+PA I +L ++ + + E+D EP RD++
Sbjct: 61 LDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQLRLHRICIEQDCEPIWNERDES 120
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
I +LCREL+I+ + +VSHTL+D
Sbjct: 121 IRSLCRELSIDFVEKVSHTLWD 142
>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
Length = 539
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 79/136 (58%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
N +K VH FR GLR+HDNP+L + +K C F +FI D AG+ VG N+ +FLL+
Sbjct: 6 NVHKKVAVHRFRHGLRLHDNPALLDAVKDCDAFLPIFIFDGESAGTKLVGYNRMKFLLES 65
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L+D+D L+K L++ G P + + + L FE+D EP + RD + C+
Sbjct: 66 LQDIDSQLKKYGGNLYLFHGTPLCVFQYISQTIGLHKLCFEQDCEPIWQHRDDLVKKFCK 125
Query: 131 ELNIEVIARVSHTLYD 146
E I+ I RVSHTL++
Sbjct: 126 ENGIKCIERVSHTLWN 141
>gi|345570555|gb|EGX53376.1| hypothetical protein AOL_s00006g242 [Arthrobotrys oligospora ATCC
24927]
Length = 637
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L+ L F V+ DP + + VG N+W+FLL C +
Sbjct: 5 VLYWFRTDLRLHDSPALKAALDLNPDVFYPVWTWDPHYVYHAKVGPNRWQFLLDCQSAVS 64
Query: 76 INLRKLNS--RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L +LNS RL V+R P ILPKLFK W + L FE+D + + + RD ++ +E
Sbjct: 65 DGLSQLNSKSRLLVLRESPLTILPKLFKAWNISHLVFEKDTDSYARKRDDEVLAKAKEAG 124
Query: 134 IEVIARVSHTLYDLDQL 150
++ I + TL+D D +
Sbjct: 125 VQCIVKYGRTLWDSDDI 141
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS-NVGINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNP+L L+ V+ILD F SS ++G +W FLLQ LEDL
Sbjct: 6 IHLFRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLRS 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+LR+L S L VI+G+ ++ ++W T +T + + EPF K + NI L EL +V
Sbjct: 66 SLRQLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRGLGEELGFQV 125
Query: 137 IARVSHTLYDLDQL 150
++ + H+LY+ ++
Sbjct: 126 LSLMGHSLYNTQRI 139
>gi|340376095|ref|XP_003386569.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 550
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Query: 18 VHWFRK-GLRMHDNPSLREGL-KGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDL 74
+HWFR LR+HDN +L L + T FR VF+LDPWF + G N+ +FLL+CL DL
Sbjct: 62 LHWFRSFSLRLHDNSALMASLLRPQTQFRAVFVLDPWFTETDKKFGANRLKFLLECLHDL 121
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
L L +L+V +GQ +L L +EW T L++++ EP KV ++ I + +NI
Sbjct: 122 SNQLEALGLKLYVAQGQTTAVLAGLCQEWGVTHLSYQKSQEPRSKVEERTISEMASMMNI 181
Query: 135 EVIARVSHTLYDLDQL 150
EV +HTLY +L
Sbjct: 182 EVEEFHNHTLYSPTEL 197
>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
Length = 542
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL L+D+
Sbjct: 8 VIWFRHGLRLHDNPALLAALADKDQGVALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDI 67
Query: 75 DINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
D L++ RL V G+PA I +L ++ + L E+D EP RD+ I LCRE
Sbjct: 68 DDQLQEATDGRGRLLVFEGEPAFIFRRLHEQVRLHRLCIEQDCEPIWNHRDETIRALCRE 127
Query: 132 LNIEVIARVSHTLYD 146
L I+ + +VSHTL+D
Sbjct: 128 LGIDFVEKVSHTLWD 142
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS-NVGINKWRFLLQCLEDLDI 76
+H FRK LR+HDNP L L+ V+ILD F SS ++G +W FLLQ LEDL
Sbjct: 6 IHLFRKELRLHDNPVLLAALESSEALYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHK 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
NL +L S L VI+G+ +L ++W T +T + + EPF K + NI L EL EV
Sbjct: 66 NLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGAELGFEV 125
Query: 137 IARVSHTLYDLDQL 150
++ VSH+LY+ ++
Sbjct: 126 LSLVSHSLYNTQRI 139
>gi|400602563|gb|EJP70165.1| DNA photolyase [Beauveria bassiana ARSEF 2860]
Length = 623
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 3/147 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
T+ +++WFR LR+HD+P+L+ L +F DP + G+N+W+FLL C
Sbjct: 2 TKPRVIYWFRTDLRLHDSPALKAALDLDPEILWPIFTWDPHYVYRVRGGLNRWQFLLDCQ 61
Query: 72 EDLDINLRKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
DL ++ KLNS+ LF++R P +LPK+FK W T L FE+D + + + RD +
Sbjct: 62 NDLSASITKLNSKSKLFLLREAPQTVLPKIFKAWGVTHLVFEKDTDSYPRERDAAVEAAA 121
Query: 130 RELNIEVIARVSHTLYDLDQLKPDSRG 156
+ ++V+ R TL+D DQ+ + G
Sbjct: 122 KTAGVKVVTRSGRTLWDSDQIVAKNHG 148
>gi|403373370|gb|EJY86604.1| Cryptochrome 5 [Oxytricha trifallax]
Length = 570
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA-GSSNVGINKWRFLLQCL 71
++K ++WFRK LR+HDN L + CT +FILDPWF VG N+ +FL+ L
Sbjct: 5 SKKLNIYWFRKALRLHDNKGLIDSSSTCTNLLPIFILDPWFVKNEEKVGTNRMKFLIDSL 64
Query: 72 EDLDINLRK-LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
DL+ +L+K +S L ++ GQPA+I KL E + L FE D EP+ + RD+ ++ +C
Sbjct: 65 IDLNKSLQKEYDSNLVILYGQPAEIFEKLAHE--SEKLYFELDTEPYAQDRDRKVVQICE 122
Query: 131 ELNIEVIARVSHTLYDLDQL 150
+ ++V HTL L L
Sbjct: 123 KAGVQVHRNTGHTLLKLSDL 142
>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 11/138 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L + VF+LDP + GS++ G+ + RFLL+
Sbjct: 18 WFRKGLRVHDNPALDAARRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVARVRFLLES 77
Query: 71 LEDLDINLRKLNSRLFVIRGQP--ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
L DLD LR L SRL V+R + +D + K+W L FE D EP+ RD+ +
Sbjct: 78 LLDLDARLRCLGSRLLVLRARDDVSDAVCAALKDWNIGKLCFESDTEPYALARDKRVTDF 137
Query: 129 CRELNIEVIARVSHTLYD 146
IEV + VSHTL+D
Sbjct: 138 AAASGIEVFSPVSHTLFD 155
>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 539
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 58/145 (40%), Positives = 77/145 (53%), Gaps = 27/145 (18%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLR------EGLKGCTTFRCVFILDPWFAGSSNVGINKWR 65
S+++ VHWFRKGLR+HDNP+L G R VFILDP GI +W
Sbjct: 2 SSKQTAVHWFRKGLRVHDNPALAAAVDRVRGQPSKLVLRPVFILDP--------GIIRW- 52
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
LR +RL V+RG P ++ P+LF+EW T LTFE D EP+ RD +
Sbjct: 53 ------------LRVGPNRLHVVRGNPVEMFPELFREWNVTLLTFEHDIEPYSVKRDATV 100
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
L R+ +EV S T+YD D++
Sbjct: 101 RELARQAKVEVQVEKSLTIYDPDEI 125
>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
Length = 501
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+LR LNSRLFV+RGQPAD+ P+LFKEW + LTFE D EPFGK RD IM L +E +EV
Sbjct: 2 SLRTLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEAGVEV 61
Query: 137 IARVSHTLYDLDQL 150
+ SHTLYDLD++
Sbjct: 62 VVENSHTLYDLDRI 75
>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
Length = 543
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFL 67
N T V WFR GLR+HDNP+L L +FI D AG+ +VG N+ RFL
Sbjct: 3 NVTCGANVIWFRHGLRLHDNPALLSALADKDQGIALIPIFIFDGESAGTKDVGYNRMRFL 62
Query: 68 LQCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
L L+DLD +++ RL + +GQP +I +L ++ + + FE+D EP RD +
Sbjct: 63 LDSLQDLDGKVQQATEGRGRLHIFQGQPKEIFRRLHQQLQLKKICFEQDCEPIWSQRDAS 122
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ +LC+EL IE + VSHTL+D
Sbjct: 123 VKSLCQELGIEWVEMVSHTLWD 144
>gi|443894766|dbj|GAC72113.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 685
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 5/149 (3%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
S +++WFR LR+HD+P+L+ L K F V+ DP + VG+N++RFLL+
Sbjct: 2 SKSARVLYWFRTDLRLHDSPALQAALDLKPAALFP-VWCWDPNYVYKHRVGVNRFRFLLE 60
Query: 70 CLEDLD--INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
+ L I + NS+L V+RG+P ++LP+L+K W T L E+DP +G+ RD I
Sbjct: 61 SMNALSERITATQSNSQLLVVRGEPTELLPELWKRWDITHLVIEKDPSAYGRRRDTLIRE 120
Query: 128 LCRELNIEVIARVSHTLYDLDQLKPDSRG 156
++ IEV+A H L+D +++ ++G
Sbjct: 121 AAKKSKIEVVAVQGHHLFDPEEVAKRNKG 149
>gi|389748358|gb|EIM89535.1| DNA photolyase [Stereum hirsutum FP-91666 SS1]
Length = 629
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L L+ V+ DP + + VG N+W+FLL C DL
Sbjct: 6 VLYWFRTDLRVHDSPALHAALQLNPECLYPVWCWDPHYVLQARVGPNRWQFLLDCQNDLS 65
Query: 76 INLRKLNS--RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L++LN+ RL V+R P +LP+L ++WK T L FEED + + RD ++ RE
Sbjct: 66 QTLKRLNTKQRLLVLREAPQTLLPRLCRDWKITHLVFEEDTDSYALERDIDVEAKVREAG 125
Query: 134 IEVIARVSHTLYD 146
+EV+ V TL+D
Sbjct: 126 VEVVKAVGRTLWD 138
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS-NVGINKWRFLLQCLEDLDI 76
+H FRKGLR+HDNP+L L+ V+ILD F SS ++G +W FLLQ LEDL
Sbjct: 6 IHLFRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLEDLRS 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+L +L S L VI+G+ ++ ++W T +T + + EPF K + NI L EL EV
Sbjct: 66 SLCQLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRALGEELGFEV 125
Query: 137 IARVSHTLYDLDQL 150
++ + H+LY+ ++
Sbjct: 126 LSLMGHSLYNTQRI 139
>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
Length = 539
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
V WFR GLR+HDNP+L L +FI D AG+ +VG N+ RFLL L+D+
Sbjct: 8 VIWFRHGLRLHDNPALLAALSDKDQGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLQDI 67
Query: 75 DINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
D+ L+K L + +GQP I +L + + + E+D EP RD+ +LCRE
Sbjct: 68 DMQLQKATEGRGGLLMCQGQPTQIFRRLHERVRLHKICVEQDCEPIWNERDEATKSLCRE 127
Query: 132 LNIEVIARVSHTLYD 146
LNIE + +VSHTL+D
Sbjct: 128 LNIEYVEKVSHTLWD 142
>gi|397603437|gb|EJK58421.1| hypothetical protein THAOC_21454 [Thalassiosira oceanica]
Length = 564
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 5/141 (3%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGL---KGCTTFRCVFILDPWFAGSSNVGINKWRFLL 68
S E +HWFRKGLR+HDNP+L L K + V+++DP +N+ RFLL
Sbjct: 5 SGENVAMHWFRKGLRLHDNPALLHALSLTKNGGSIFPVYVVDPNSYQLLKCSVNRARFLL 64
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP--EPFGKVRDQNIM 126
+C +DLD +L++ SRL+V G P ++LP+++K++ T +T E D EP+ RD +
Sbjct: 65 ECCQDLDESLKRCGSRLYVATGDPVEVLPEMWKKFGVTHMTHESDETGEPYALQRDTAVA 124
Query: 127 TLCRELNIEVIARVSHTLYDL 147
+ ++ +EVI S TL L
Sbjct: 125 AVAKDAGVEVIDFTSETLRPL 145
>gi|358055721|dbj|GAA98066.1| hypothetical protein E5Q_04748 [Mixia osmundae IAM 14324]
Length = 601
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
+++WFR LR+HD+P+L+ L K F + DP + VG N+W+FLL+ + D
Sbjct: 4 VIYWFRTDLRLHDSPALQAALDLKPDVLFP-TWCFDPRYVYEQRVGPNRWKFLLESMSDT 62
Query: 75 DINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+ K+N S+LFV+RG P ILP L ++WK + + +E+D +P+ RD+ + L ++
Sbjct: 63 SAAITKVNPKSQLFVLRGHPTTILPALLRKWKISDIVWEKDDDPYTMERDKAVEKLAKDA 122
Query: 133 NIEVIARVSHTLYDLDQLKPDSRG 156
++V HTLYD + ++ ++G
Sbjct: 123 GVKVHVVHGHTLYDAEAIEAKTKG 146
>gi|425767796|gb|EKV06352.1| DNA photolyase, putative [Penicillium digitatum Pd1]
gi|425769478|gb|EKV07970.1| DNA photolyase, putative [Penicillium digitatum PHI26]
Length = 604
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++W R LR+HD+P+L L + F ++ D + + VG N+W+FLL+C DL
Sbjct: 11 VLYWHRTDLRLHDSPALHAALALNPSVFIPIWTWDQHYVYKARVGPNRWKFLLECQSDLS 70
Query: 76 INLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
KLN +L V+R P +LPKL++ W T L FE+D + + + RD +M L ++
Sbjct: 71 TAYTKLNPKQKLHVVREGPQTVLPKLWEHWGVTHLVFEKDTDAYARDRDNAVMRLAQKAG 130
Query: 134 IEVIARVSHTLYDLDQL 150
+EVI ++ TL+D D +
Sbjct: 131 VEVIVKMGRTLFDPDDV 147
>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
Length = 525
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-PWFAGSSNVGINKWRFLLQ 69
N T +HWFRKGLR+HDN L ++ CV+ LD W + +G N+ RFLL+
Sbjct: 4 NLTRHRTLHWFRKGLRLHDNRPLLAAIRSSEAVYCVYCLDLEWMRANERIGNNRIRFLLE 63
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L DLD NLRK+ +RLFV+RG + +E++ T +T+ D E F + + I+
Sbjct: 64 SLTDLDENLRKIGTRLFVLRGNARTAIKTFCREYEITQMTYMRDAEVFYRQLEAEILEEV 123
Query: 130 RELNIEVIARVSHTLYDLDQLKPDSRG 156
I + HTLYD ++ + G
Sbjct: 124 NRREIVTRSDHGHTLYDPQEIIDANEG 150
>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
Length = 542
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLK---GCTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+T V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALAEKDQGIALLPVFIFDGESAGTKNVGYNRMRFLL 61
Query: 69 QCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+D+D ++ L RL + G+P I +L ++ + + E+D EP RD+ I
Sbjct: 62 DSLQDIDDQIQTLTDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLEQDCEPIWNHRDETI 121
Query: 126 MTLCRELNIEVIARVSHTLYD 146
+LC EL IE + +VSHTL++
Sbjct: 122 RSLCHELGIEFVEKVSHTLWN 142
>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCT---TFRCVFILDPWFAGSSNVGINKWRFLLQ 69
T++ V WFR GLR+HDNP+L E + + +FI D AG+ VG N+ FLL
Sbjct: 2 TKRANVLWFRHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLN 61
Query: 70 CLEDLDINLRKL------NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
L D+D L+ + + +L++ +G PA + +L + ++ + FE+D EP RD
Sbjct: 62 SLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDD 121
Query: 124 NIMTLCRELNIEVIARVSHTLYD 146
++ +LC +L+IE + +VSHTL+D
Sbjct: 122 SVRSLCNDLDIEAVEKVSHTLWD 144
>gi|346324524|gb|EGX94121.1| cryptochrome-2 [Cordyceps militaris CM01]
Length = 902
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
+ +++WFR LR+HD+P+L+ L +F DP + + G+N+W+FLL C
Sbjct: 3 KSRVIYWFRTDLRLHDSPALKAALDLDPEVLWPIFTWDPHYVYRARGGLNRWQFLLDCQN 62
Query: 73 DLDINLRKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
DL ++ KLNS+ LF++R P + PK+FK W T L FE+D + + RD + +
Sbjct: 63 DLSTSITKLNSKSKLFLLREAPQTVFPKIFKAWGVTHLVFEKDTDAYPLERDAIVKAAAK 122
Query: 131 ELNIEVIARVSHTLYDLDQLKPDSRG 156
+ ++VI TL+D D + + G
Sbjct: 123 DAGVKVITCSGRTLWDSDAIVAKNNG 148
>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
Length = 374
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-PWFAGSSNVGINKWRFLLQCLEDLDI 76
VHWFRKGLR+HDN +L + ++ILD W K RFL++CL DLD
Sbjct: 8 VHWFRKGLRLHDNEALYHAVTTSQVVFPIYILDVDWQTEKEKFSALKTRFLIECLRDLDE 67
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+K +RL+V+ G ++ K KE + T +T+ +D E F + RD+ I + + I+
Sbjct: 68 GLKKCGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVHRMEIKT 127
Query: 137 IARVSHTLYDLDQLKPDSRG 156
+ + HTLYD D++ + G
Sbjct: 128 KSFLGHTLYDQDEVIAKNGG 147
>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
Length = 539
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
V WFR GLR+HDNP++ L +FI D AG+ NVG N+ RFLL L+D+
Sbjct: 8 VIWFRHGLRLHDNPAMLAALSNKDQGVALIPIFIFDGESAGTKNVGYNRMRFLLDSLQDI 67
Query: 75 DINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
D L++ L + GQP I +L + + E+D EP RD+ + +LCRE
Sbjct: 68 DRQLQEATEGRGGLLICEGQPVHIFRRLHEHVGLHKICVEQDCEPIWNERDEAVKSLCRE 127
Query: 132 LNIEVIARVSHTLYD 146
L IE + +VSHTL+D
Sbjct: 128 LGIEYVEKVSHTLWD 142
>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
CCMP1335]
gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1, partial [Thalassiosira pseudonana
CCMP1335]
Length = 556
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 6/136 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGL----KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+HWFRKGLR+HDNP+L L V+I+DP + + RFLL+C+ D
Sbjct: 16 MHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQLLKCSVLRARFLLECISD 75
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP--EPFGKVRDQNIMTLCRE 131
LD +LR+ SRL+V G P ++LP+L+KEW T +T E D EP+ RD+ + ++ ++
Sbjct: 76 LDKSLRERGSRLYVATGDPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEGVRSVAKK 135
Query: 132 LNIEVIARVSHTLYDL 147
++V+ S TL L
Sbjct: 136 NGVQVMEFRSETLRPL 151
>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
Length = 539
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
V WFR GLR+HDNP+L L +FI D AG+ +VG N+ RFLL L+D+
Sbjct: 8 VIWFRHGLRLHDNPALLSALADKDYGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLDDI 67
Query: 75 DINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
D L++++ L + GQP DI +L + + + E D EP RD+ I LCRE
Sbjct: 68 DKQLKEVSDGQGGLLICEGQPTDIFRRLHDQVRLHKICVELDCEPIWNERDEAINNLCRE 127
Query: 132 LNIEVIARVSHTLYD 146
L IE + VSHTL+D
Sbjct: 128 LGIEYVEMVSHTLWD 142
>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
gi|205696352|sp|Q293P8.2|CRY1_DROPS RecName: Full=Cryptochrome-1
gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLK---GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
V WFR GLR+HDNP+L L+ VFI D AG+ +VG N+ RFLL L+DL
Sbjct: 8 VLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSLQDL 67
Query: 75 DINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
D L+ RLFV G+P I +L ++ + + E D EP RD++ LCRE
Sbjct: 68 DEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAELDCEPIWNERDESARLLCRE 127
Query: 132 LNIEVIARVSHTLYD 146
L IE + +VSHTL+D
Sbjct: 128 LGIEYVEKVSHTLWD 142
>gi|449304579|gb|EMD00586.1| hypothetical protein BAUCODRAFT_175264 [Baudoinia compniacensis
UAMH 10762]
Length = 647
Score = 98.2 bits (243), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
++ +++WFR LR+HD+P+L+ L ++ DP + + VG N+W+FL+ C+
Sbjct: 2 SKPRVLYWFRTDLRLHDSPALKAALDLQPEVLYPIWCWDPHYVYHARVGNNRWQFLIDCM 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
D+ ++ LN S+LFV+R +L KLF W+ T + FE+D + + + RD+ ++
Sbjct: 62 NDVSRSITNLNPNSKLFVLREPAVTLLSKLFTAWRITHIVFEKDTDAYARERDKQVVESA 121
Query: 130 RELNIEVIARVSHTLYDLDQL 150
R+ +EVI + TL+D D +
Sbjct: 122 RKAGVEVIVKSGRTLWDSDDI 142
>gi|210136298|gb|ACJ08741.1| cryptochrome [Neobellieria bullata]
Length = 542
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 6/133 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
WFR GLR+HDNP+L + + +FI D AG+ +VG N+ +FLL LED++
Sbjct: 7 WFRHGLRLHDNPALLDAISDKDEGIELLPIFIFDGESAGTQSVGYNRLKFLLDSLEDINN 66
Query: 77 NLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LR ++ RL++++G P I L ++ L FE+D EP RD + LC +L
Sbjct: 67 QLRSVSLSLGRLYIMKGNPVQIFRSLHEQRGIKKLCFEQDCEPIWNRRDNAVKNLCHDLG 126
Query: 134 IEVIARVSHTLYD 146
I I R+SHTL+D
Sbjct: 127 ITCIERISHTLWD 139
>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-PWFAGSSNVGINKWRFLLQCLEDLDI 76
VHWFRKGLR+HDN +L + ++ILD W K RFL++CL DLD
Sbjct: 8 VHWFRKGLRLHDNEALYHAVTTSQVVFPIYILDVDWQTEKEKFSALKTRFLIECLRDLDE 67
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+K +RL+V+ G ++ K KE + T +T+ +D E F + RD+ I + + I+
Sbjct: 68 GLKKYGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVHRMEIKT 127
Query: 137 IARVSHTLYDLDQL 150
+ + HTLYD D++
Sbjct: 128 KSFLGHTLYDQDEV 141
>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
Length = 604
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 12/141 (8%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
T+ +V+WFR LR+HD+P+L+ L +F DP++ + G N+W+FL
Sbjct: 2 TKPRVVYWFRTDLRLHDSPALKAALDLEPDVLWPIFTWDPYYVYRARGGTNRWQFL---- 57
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
++ KLN S+LFV+R P + PKL K WK T L FE+D + + + RD +
Sbjct: 58 -----SITKLNPKSKLFVLREAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVVAKAA 112
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+E +EV+ R TL+D D++
Sbjct: 113 KEAGVEVVIRSGRTLWDSDEI 133
>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
Length = 359
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Query: 23 KGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS-NVGINKWRFLLQCLEDLDINLRKL 81
KGLR+HDNP L L+ V+ILD F SS ++G +W FLLQ LEDL NL +L
Sbjct: 1 KGLRLHDNPVLLAALESSEALYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQL 60
Query: 82 NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141
S L VI+G+ +L ++W T +T + + EPF K + NI L EL EV + VS
Sbjct: 61 GSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFEVFSLVS 120
Query: 142 HTLYDLDQL 150
H+LY+ ++
Sbjct: 121 HSLYNTQRI 129
>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 9/143 (6%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCT---TFRCVFILDPWFAGSSNVGINKWRFLLQ 69
T++ V WF GLR+HDNP+L E + + +FI D AG+ VG N+ FLL
Sbjct: 2 TKRANVLWFXHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLN 61
Query: 70 CLEDLDINLRKL------NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
L D+D L+ + + +L++ +G PA + +L + ++ + FE+D EP RD
Sbjct: 62 SLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDD 121
Query: 124 NIMTLCRELNIEVIARVSHTLYD 146
++ +LC +L+IE + +VSHTL+D
Sbjct: 122 SVRSLCNDLDIEAVEKVSHTLWD 144
>gi|404313303|gb|AFR54426.1| cryptochrome 1 [Mythimna separata]
Length = 528
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
V WFR GLR+HDNPSL L KG F +FI D AG+ VG N+ R+LL+ LEDLD
Sbjct: 6 VLWFRHGLRLHDNPSLHCALEEKGFPFFP-IFIFDGETAGTKLVGYNRMRYLLEALEDLD 64
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L+K RL +++G+P + +L++E+ L FE+D EP + RD ++ C+E+ +
Sbjct: 65 SQLKKHGGRLIMLKGKPNVVFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKAACKEIGVV 124
Query: 136 VIARVSHTLYDLDQL 150
VSHTL++ D +
Sbjct: 125 CKENVSHTLWEPDTV 139
>gi|260787134|ref|XP_002588610.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
gi|229273775|gb|EEN44621.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
Length = 521
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 14 EKH-MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV--GINKWRFLLQC 70
E+H +HWFRKGLR HDNPSL L+ VF++D F + G N+WRF+++C
Sbjct: 64 EQHNTIHWFRKGLRFHDNPSLLHALRTSRHVYPVFVMDLDFMKDFKIRSGANQWRFVIEC 123
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
L+DLD LR RLFV RG + F++W T LT + + E + + RD
Sbjct: 124 LQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHRFRD 175
>gi|452989588|gb|EME89343.1| hypothetical protein MYCFIDRAFT_201892 [Pseudocercospora fijiensis
CIRAD86]
Length = 655
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
T+ +++WFR LR+HD+P+L+ L ++ D + + VG N+++FL+ C
Sbjct: 2 TKPRVLYWFRTDLRLHDSPALKAALDLQPEVLYPIWCWDSHYVYRARVGANRFQFLIDCQ 61
Query: 72 EDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
D+ ++ KLN S+LFV+R +LPKLFK WK + L FE+D + + + RD +
Sbjct: 62 NDVSKSITKLNKKSKLFVLREPAVTLLPKLFKAWKISHLVFEKDTDAYARERDAKVTEAA 121
Query: 130 RELNIEVIARVSHTLYDLDQL 150
++ +EVI + TL+D D +
Sbjct: 122 KKAGVEVIIKNGRTLFDPDDI 142
>gi|386762983|gb|AFJ22638.1| cryptochrome 1 [Agrotis ipsilon]
Length = 528
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
V WFR GLR+HDNPSL L KG F +FI D AG+ VG N+ R+LL+ L+DLD
Sbjct: 6 VLWFRHGLRLHDNPSLHAALEEKGFPFFP-IFIFDGETAGTKLVGYNRMRYLLEALDDLD 64
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+K RL +++G+P + +L++E+ L FE+D EP + RD ++ C+E+ +
Sbjct: 65 NQFKKYGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKAACKEIGVV 124
Query: 136 VIARVSHTLYDLDQL 150
VSHTL++ D +
Sbjct: 125 CKEHVSHTLWEPDTV 139
>gi|371574660|gb|AEX49898.1| cryptochrome 1 [Helicoverpa armigera]
Length = 528
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
V WFR GLR+HDNPSL L KG F +FI D AG+ VG N+ R+LL+ L+DLD
Sbjct: 6 VLWFRHGLRLHDNPSLHSALEEKGFPFFP-IFIFDGETAGTKLVGYNRMRYLLEALDDLD 64
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+K RL +++G+P + +L++E+ L FE+D EP + RD ++ + C+E+ +
Sbjct: 65 SQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKSACKEIGVV 124
Query: 136 VIARVSHTLYD 146
VSHTL++
Sbjct: 125 CREHVSHTLWE 135
>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
Length = 548
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR GLR+HDNPSL L+ F +FI D AG+ VG N+ R+LL+ L+DLD
Sbjct: 6 VLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLDS 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+K RL +++G+P + +L++E+ L FE+D EP + RD ++ C+E+ +
Sbjct: 66 QFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKEIGVVC 125
Query: 137 IARVSHTLYDLDQL 150
VSHTL++ D +
Sbjct: 126 KEHVSHTLWEPDTV 139
>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
Length = 548
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGL--KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
V WFR GLR+HDNPSL L KG F +FI D AG+ VG N+ R+LL+ L+DLD
Sbjct: 6 VLWFRHGLRLHDNPSLHSALEEKGFPFFP-IFIFDGETAGTKLVGYNRMRYLLEALDDLD 64
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+K RL +++G+P + +L++E+ L FE+D EP + RD ++ + C+E+ +
Sbjct: 65 SQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKSACKEIGVV 124
Query: 136 VIARVSHTLYD 146
VSHTL++
Sbjct: 125 CREHVSHTLWE 135
>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 73/129 (56%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFR GLR+HDNP+L E +FI D G N RFLL+ L DL+ N
Sbjct: 5 VHWFRNGLRLHDNPALIEAHNNAEKLITLFIFDETTFNPKWYGYNPMRFLLESLIDLNNN 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L + RL++++G P +I + ++ +T+E+D G+ RD+ + + C E +I+ I
Sbjct: 65 LALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSFCDENDIKCI 124
Query: 138 ARVSHTLYD 146
VSHTL++
Sbjct: 125 ETVSHTLWN 133
>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
Length = 547
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 9/138 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCT---TFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
V WFR GLR+HDNP+L E + T +FI D AG+ VG N+ FLL L ++
Sbjct: 7 VMWFRHGLRLHDNPALLEAISDKTEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAEI 66
Query: 75 DINLRKLNS------RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
D L+ + +L++ +G P + +L + ++ + FE+D EP RD ++ L
Sbjct: 67 DKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKICFEQDCEPIWNRRDDSVRAL 126
Query: 129 CRELNIEVIARVSHTLYD 146
C +L+IE + +VSHTL+D
Sbjct: 127 CNDLDIEAVEKVSHTLWD 144
>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 72/129 (55%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFR GLR+HDNP+L E +FI D G N RFLL L DL+ N
Sbjct: 5 VHWFRNGLRLHDNPALIEAHNNAEKLITLFIFDETTFNPKWYGYNPMRFLLXSLIDLNNN 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L + RL++++G P +I + ++ +T+E+D G+ RD+ + + C E +I+ I
Sbjct: 65 LALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSFCDENDIKCI 124
Query: 138 ARVSHTLYD 146
VSHTL++
Sbjct: 125 ETVSHTLWN 133
>gi|321453621|gb|EFX64839.1| hypothetical protein DAPPUDRAFT_65902 [Daphnia pulex]
Length = 92
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 63/92 (68%)
Query: 56 SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPE 115
++ VG N+WRFL+Q L+DL+ NL+K+ S LF+++ P ++ K FKEW LTFE + E
Sbjct: 1 NAKVGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESPTEMFKKYFKEWNIKKLTFEVEIE 60
Query: 116 PFGKVRDQNIMTLCRELNIEVIARVSHTLYDL 147
P+ K +D+ I L ++ V+ +VSHT+YDL
Sbjct: 61 PYAKTQDEEIKKLADHHSVPVVVKVSHTIYDL 92
>gi|148467519|gb|ABQ65680.1| antennal cryptochrome 1 [Spodoptera littoralis]
Length = 348
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR LR+HDNPSL L+ F +FI D AG+ VG N+ R+LL+ L+DLD
Sbjct: 6 VLWFRHRLRLHDNPSLHSALEEKGFPFFPIFIFDGESAGTKVVGYNRMRYLLEALDDLDN 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+K RL +++G+P + +L++E+ L FE+D EP + RD ++ C+E+ +
Sbjct: 66 QFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKEIGVVC 125
Query: 137 IARVSHTLYDLDQL 150
VSHTL++ D +
Sbjct: 126 KEHVSHTLWEPDTV 139
>gi|392574712|gb|EIW67847.1| hypothetical protein TREMEDRAFT_21150, partial [Tremella
mesenterica DSM 1558]
Length = 548
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK--GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
+++WFR LR+ D+P+L L F ++ DP + VG+N+W FLL+ ++DL
Sbjct: 2 ILYWFRTDLRITDSPALTTALSLPDMNAFYPIWCWDPSYIYGHRVGLNRWSFLLESMKDL 61
Query: 75 DINLRKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L LN R L V RG P ++LP L++EW T + +E+D + K+RD+ I L +E
Sbjct: 62 SDQLTSLNPRQKLHVCRGSPEEVLPVLWREWGITHIVWEKDANAYAKIRDECIKRLAKEK 121
Query: 133 NIEVIARVSHTLYDLD 148
+ V+ L+D D
Sbjct: 122 GVVVVDVPGRHLFDPD 137
>gi|392587897|gb|EIW77230.1| hypothetical protein CONPUDRAFT_129501 [Coniophora puteana
RWD-64-598 SS2]
Length = 658
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++WFR LR+HD+P+L L V+ DP + S VG+N++ FLL+ + DL
Sbjct: 7 VLYWFRTDLRVHDSPALHAALALNPEVLYPVWTWDPEYVFSHRVGVNRFNFLLESMHDLS 66
Query: 76 INL--RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL- 132
L R SRL V+R P +P L ++WK T L +E D + +RD ++ R L
Sbjct: 67 AALTTRSPESRLLVVRAPPQMAIPALCRQWKITHLVYERDTAGYAAIRDSEVVKRVRALG 126
Query: 133 NIEVIARVSHTLYD 146
EV+A HTLYD
Sbjct: 127 GTEVLAVHGHTLYD 140
>gi|346975848|gb|EGY19300.1| cryptochrome-1 [Verticillium dahliae VdLs.17]
Length = 652
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN---VGINKWRFLLQCLED 73
+++WFR LR+HD+P+L G L SS+ + N+ R L C D
Sbjct: 6 VIYWFRTDLRLHDSPALDGGAGARAGGAVALCLHGIRTTSSDSCVLAANQCR--LDCQND 63
Query: 74 LDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
L ++ KLN S+LFV+R P + PKLFK WK T L FE+D + +G+ RD ++ RE
Sbjct: 64 LSASITKLNPKSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVVVAAARE 123
Query: 132 LNIEVIARVSHTLYDLDQL 150
+EVI R TL+D D +
Sbjct: 124 AGVEVIMRSGRTLWDSDDI 142
>gi|340376121|ref|XP_003386582.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 544
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 17 MVHWFR-KGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG--INKWRFLLQCLED 73
++HWFR LR+ DNP+ + + V ILDPWF ++ G N WRFLL+ L D
Sbjct: 47 VLHWFRLDSLRLSDNPAFHHAVSSGKRLKAVVILDPWFNSNNKSGPSANVWRFLLESLHD 106
Query: 74 LDINLRK--LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF-GKVRDQNIMTLCR 130
LD L+K N+RL + GQP +L LF +W + LTF+ K D+ I
Sbjct: 107 LDSRLQKRPYNTRLNIYLGQPTVVLSALFHKWNVSELTFQASQTSLESKKHDELIKFAAD 166
Query: 131 ELNIEVIARVSHTLYD 146
N++ + SHTLY+
Sbjct: 167 SQNVKTTSFYSHTLYN 182
>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
Length = 525
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 69/129 (53%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WFR+GLR+HDNP+L L+ F +F+ D F + FLL+CL DL+ +
Sbjct: 3 VLWFRRGLRIHDNPALLSALENSKDFIALFVFDTTFQDPGYKPYHMNGFLLECLHDLNES 62
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L + ++L V +G P ++ L L F +D EP RD LC EL+IEV
Sbjct: 63 LESVGTKLHVFQGCPLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAKNLCSELDIEVY 122
Query: 138 ARVSHTLYD 146
V+HTL+D
Sbjct: 123 EHVAHTLWD 131
>gi|345320146|ref|XP_003430248.1| PREDICTED: cryptochrome-1-like [Ornithorhynchus anatinus]
Length = 53
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 45/50 (90%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR 65
+ VHWFRKGLR+HDNP+LR+ ++G T RCV+ILDPWFAGSSNVGIN+WR
Sbjct: 4 NAVHWFRKGLRLHDNPALRDCVRGADTVRCVYILDPWFAGSSNVGINRWR 53
>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
Length = 633
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 36/152 (23%)
Query: 7 PTNPN---STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------A 54
P +PN ++ + WFRKGLR+HDNP+L+ VF++DP+F
Sbjct: 141 PNSPNPSMASGSGSLMWFRKGLRIHDNPALQHAAMESNCVYPVFVIDPYFMEPDPNAFSP 200
Query: 55 GSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
GSS G+N+ RFLL+ L DLD +LR+L SRL V++G P +++ + K+
Sbjct: 201 GSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLKK------------ 248
Query: 115 EPFGKVRDQNIMTLCRELNIEVIARVSHTLYD 146
IEV + VSHTL+D
Sbjct: 249 ------------NYASAAGIEVFSPVSHTLFD 268
>gi|357139910|ref|XP_003571518.1| PREDICTED: (6-4)DNA photolyase-like [Brachypodium distachyon]
Length = 547
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 76/138 (55%), Gaps = 11/138 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L +G VF+LDP + GS+ G+ + RFLL+
Sbjct: 19 WFRKGLRVHDNPALDAARRGAARVYPVFVLDPRYLRPDPAAHSPGSARAGVARVRFLLES 78
Query: 71 LEDLDINLRKLNSRLFVIRGQP--ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
L DLD LR+L SRL ++R + D L ++W L FE D EP+ RD+ +
Sbjct: 79 LSDLDAGLRRLGSRLLLLRARDDVPDALCAALRDWNIGKLCFEADTEPYALARDKRVTDF 138
Query: 129 CRELNIEVIARVSHTLYD 146
L IEV VSHTL+D
Sbjct: 139 AAALGIEVFTPVSHTLFD 156
>gi|378728105|gb|EHY54564.1| cryptochrome [Exophiala dermatitidis NIH/UT8656]
Length = 987
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 4 LSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWF----AGSSN 58
+S NPN +++WFR LR+HD+P L L + ++I D + GS++
Sbjct: 42 VSGQPNPNP---RVIYWFRTDLRLHDSPGLTTALSLDPSALIPLWIWDSHYVERYGGSAS 98
Query: 59 VGINKWRFLLQCLEDLDINLRKLN--SRLFVIRG-QPADILPKLFKEWKTTCLTFEEDPE 115
N+WRFLL+ + DL +L +LN +L V+RG PA I+P L ++WK L FE+D +
Sbjct: 99 T--NRWRFLLESMADLSASLARLNPNQKLHVVRGGPPAKIIPVLLRKWKINVLVFEKDTD 156
Query: 116 PFGKVRDQNIMTLCRELNIEVIARV-SHTLYDLDQL 150
+ + RD+ + L + ++V+ TL+D D +
Sbjct: 157 AYARARDEQVTQLAEAMGVKVLCVPGGRTLFDSDDV 192
>gi|406507545|gb|AFS34616.1| cryptochrome 1, partial [Clunio marinus]
Length = 378
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 8/135 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGL-----KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
V WFR+GLR+HDNP+L E + + TF VFI D AG+ +VG N+ +FLL+ L
Sbjct: 5 VLWFRQGLRLHDNPALIEAINTDDGRRQVTFYPVFIFDGESAGTKDVGYNRMKFLLESLL 64
Query: 73 DLDINLRKLNS-RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
DLD ++L + LF+ +G+P +I L + FE+D E RD I L RE
Sbjct: 65 DLDEQFKQLGAPGLFIFQGKPTEIFQNLHDNIGINKICFEQDCEY--NERDNEIKYLSRE 122
Query: 132 LNIEVIARVSHTLYD 146
L IEV+ +VSHTL++
Sbjct: 123 LGIEVVEKVSHTLWN 137
>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 616
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 9/151 (5%)
Query: 3 PLSTPTNPNSTEKH----MVHWFRKGLRMHDNPSLREGLKGC---TTFRCVFILDPWFAG 55
PLST + H ++ WFR+ LR+HDN +L ++ T V+IL
Sbjct: 56 PLSTSQCEKTRLYHKRRRILLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYILHR--PE 113
Query: 56 SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPE 115
+ G +++FLL+CLED+D +LR+ SRL V G+ L L + WK T L FE+
Sbjct: 114 NKKCGAVRFQFLLECLEDIDTSLRQKQSRLLVFCGEAISFLTVLMQAWKITDLIFEKFQL 173
Query: 116 PFGKVRDQNIMTLCRELNIEVIARVSHTLYD 146
P+ RD+ IM++ + L+I V TL+D
Sbjct: 174 PYAIKRDEKIMSMAQTLHINVTTVSGATLHD 204
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCV--FILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+HWFR+ LR+ DNP+L G + R + FILD + G+ + F++ L DLD
Sbjct: 4 IHWFRRDLRLRDNPAL-SGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLD 62
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+LR SRL V RG+P+D+L L +++ D PF + RDQ+I + R+LN+
Sbjct: 63 ASLRARGSRLVVRRGRPSDVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDLNVA 122
Query: 136 VIARVSHTLYDLDQLKPD 153
+ + D ++ D
Sbjct: 123 TFIAADAVIMEPDDVRTD 140
>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
Length = 551
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 15/142 (10%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRC--VFILDPWF---------AGSSNVGINKWRFLL 68
WFRKGLR+HDNP+L +G R VF+LDP + GS+ G+ + RFLL
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAVARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFLL 77
Query: 69 QCLEDLDINLRKLNSRLFVIR----GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
+ L DLD LR+L SRL ++R G A + K+W L FE D EP+ RD+
Sbjct: 78 ESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDKK 137
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+M I+V + VSHTL+D
Sbjct: 138 VMDFAAASGIDVFSPVSHTLFD 159
>gi|15824993|gb|AAL09564.1|AF363633_1 cryptochrome 2 [Coturnix japonica]
Length = 49
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/47 (65%), Positives = 40/47 (85%)
Query: 19 HWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR 65
HWFR+GLR+HDNP+L+ L+G + RC++ILDPWFA SS VGIN+WR
Sbjct: 3 HWFRRGLRLHDNPALQAALRGAASIRCIYILDPWFAASSAVGINRWR 49
>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
morsitans]
Length = 536
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGL----KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
V WFR GLR+HDNP+L E L KG +FI D AG+ G N+ RFLL L D
Sbjct: 5 VLWFRHGLRLHDNPALLEALADREKGIALVP-IFIFDGESAGTKCTGYNRLRFLLDSLRD 63
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD R RL+ +G P I +L + + L E+D EP RD ++ LC EL
Sbjct: 64 LDDQFRCQRGRLYTFQGNPTTIFKELHECFGINKLCVEQDCEPIWNRRDNDVKVLCNELG 123
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
I+ + ++SHTL++ Q+ + G
Sbjct: 124 IKWVEKISHTLWNPRQVIQTNGG 146
>gi|348680511|gb|EGZ20327.1| hypothetical protein PHYSODRAFT_492233 [Phytophthora sojae]
Length = 650
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 1 MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLK---------GCTTFRCVFILDP 51
+ P ++ E ++ WFR+ LR+HDN +L E L+ TT V +
Sbjct: 66 IGPGTSSGRAGEEEIRVLMWFRRDLRLHDNLALSEALQLVKQQEGEMAQTTGHKVLFIPL 125
Query: 52 WFAGSSNV---GINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL 108
+ + G+N+++F+L+ + DL L SRL V RG +L +L W+ T L
Sbjct: 126 YIVHRPKIMLCGVNRFQFMLESVSDLADALAARGSRLVVARGDGLQVLRRLLPAWRITHL 185
Query: 109 TFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
F+ EPF RD + L R L I+ +TLYDLD + + G
Sbjct: 186 FFDAASEPFAIARDNRAVDLARHLGIQTHVTHGYTLYDLDAVIAGNEG 233
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 18 VHWFRKGLRMHDNPSLREG-LKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
+HWFR+ LR+HDNP+L ++ +FILD + G + F++ L DLD
Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDLDA 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLR SRL + RG+ D++ + +E T + + D PF + RD + R+LN+E
Sbjct: 64 NLRARGSRLVIRRGRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRDLNVE 122
>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
Length = 551
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 20 WFRKGLRMHDNPSL--REGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLL 68
WFRKGLR+HDNP+L VF+LDP F GS+ G+ + RFLL
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRFLLPDQAAPSPGSARAGVARVRFLL 77
Query: 69 QCLEDLDINLRKLNSRLFVIR----GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
+ L DLD LR+L SRL ++R G A + K+W L FE D EP+ RD+
Sbjct: 78 ESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDKK 137
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+M I+V + VSHTL+D
Sbjct: 138 VMDFAAASGIDVFSPVSHTLFD 159
>gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica]
Length = 571
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11 NSTEKHMVHWF-RKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
+S E + WF LR++DN L+ +K C R + LD F S+ +W+F+
Sbjct: 68 SSPEHVTLFWFTEAALRLNDNAGLKAAMKNCKAVRFCYFLDERFINESSP---RWKFIKS 124
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFG-KVRDQNIMTL 128
L DLD L+ L SRL V+ GQP++ LP+LF +W L F P + RD+ I++L
Sbjct: 125 ALSDLDEQLKNLGSRLHVLSGQPSERLPQLFADWNVVRLGFSAHPGCTDMRRRDRAIVSL 184
Query: 129 CRELNIEVIAR 139
+EV+ R
Sbjct: 185 ALRHGVEVVYR 195
>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
gi|306756329|sp|Q0E2Y1.1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
Length = 551
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 20 WFRKGLRMHDNPSL--REGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLL 68
WFRKGLR+HDNP+L VF+LDP + GS+ G+ + RFLL
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFLL 77
Query: 69 QCLEDLDINLRKLNSRLFVIR----GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
+ L DLD LR+L SRL ++R G A + K+W L FE D EP+ RD+
Sbjct: 78 ESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDKK 137
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+M I+V + VSHTL+D
Sbjct: 138 VMDFAAASGIDVFSPVSHTLFD 159
>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
Length = 560
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 20 WFRKGLRMHDNPSL--REGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLL 68
WFRKGLR+HDNP+L VF+LDP + GS+ G+ + RFLL
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFLL 77
Query: 69 QCLEDLDINLRKLNSRLFVIR----GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
+ L DLD LR+L SRL ++R G A + K+W L FE D EP+ RD+
Sbjct: 78 ESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDKK 137
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+M I+V + VSHTL+D
Sbjct: 138 VMDFAAASGIDVFSPVSHTLFD 159
>gi|427739107|ref|YP_007058651.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
gi|427374148|gb|AFY58104.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
Length = 519
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DN S+ + + FI+DPWF +VG + RFL +CLE+LD+NL+
Sbjct: 5 WFRRDLRLSDNESVFKAVANNAEVLPCFIIDPWFFEWKDVGKARVRFLFECLENLDVNLQ 64
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTC----LTFEEDPE-PFGKVRDQNIMTLCRELNI 134
++ S+LF+ G D++ + KE L F D + +G RD+ I+ ++ N+
Sbjct: 65 EIGSKLFIFEGNSVDVIQNITKELIQKSYQPKLYFNRDVQVEYGVTRDKLIIDFYQQQNL 124
Query: 135 E 135
E
Sbjct: 125 E 125
>gi|226494726|ref|NP_001146620.1| uncharacterized protein LOC100280217 [Zea mays]
gi|219888051|gb|ACL54400.1| unknown [Zea mays]
Length = 421
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 20 WFRKGLRMHDNPSL-----REGLKGCTTFRCVFILDPWF---------AGSSNVGINKWR 65
WFRKGLR+HDNP+L VF+LDP + GS+ G+ + R
Sbjct: 13 WFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAASPGSARAGVARIR 72
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQP--ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
FLL+ L DLD LR+L SRL ++R + AD + K+W L FE D EP+ RD+
Sbjct: 73 FLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALARDK 132
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQL 150
+ IEV+ VSHTL+D +++
Sbjct: 133 KVTDFALASGIEVLTPVSHTLFDPEEI 159
>gi|413936069|gb|AFW70620.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 548
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 20 WFRKGLRMHDNPSL-----REGLKGCTTFRCVFILDPWF---------AGSSNVGINKWR 65
WFRKGLR+HDNP+L VF+LDP + GS+ G+ + R
Sbjct: 13 WFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAASPGSARAGVARIR 72
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQP--ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
FLL+ L DLD LR+L SRL ++R + AD + K+W L FE D EP+ RD+
Sbjct: 73 FLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALARDK 132
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQL 150
+ IEV+ VSHTL+D +++
Sbjct: 133 KVTDFALASGIEVLTPVSHTLFDPEEI 159
>gi|413936068|gb|AFW70619.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 397
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 16/147 (10%)
Query: 20 WFRKGLRMHDNPSL-----REGLKGCTTFRCVFILDPWF---------AGSSNVGINKWR 65
WFRKGLR+HDNP+L VF+LDP + GS+ G+ + R
Sbjct: 13 WFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAASPGSARAGVARIR 72
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQP--ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
FLL+ L DLD LR+L SRL ++R + AD + K+W L FE D EP+ RD+
Sbjct: 73 FLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALARDK 132
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQL 150
+ IEV+ VSHTL+D +++
Sbjct: 133 KVTDFALASGIEVLTPVSHTLFDPEEI 159
>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 639
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)
Query: 13 TEKHMVH-------WFRKGLRMHDNPSLREGLKGCTT---FRCVFILDPWFAGSSN---V 59
TEKH + WFR+ LR+HDN +L LK + V ++ +
Sbjct: 49 TEKHAIMPSIRAIMWFRRDLRLHDNHALHRALKFVESQNDTETVQLIPLYIIHRPKRLLC 108
Query: 60 GINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
G+N+++FLL+ + L + SRL + RG+ D+ ++ WK T + F++ EPF
Sbjct: 109 GVNRFQFLLESVGTLAEAIAARGSRLIIARGEGIDVFRRILPAWKITHIFFDQAIEPFAI 168
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
RD + L LN+ V +TLYD D++ + G
Sbjct: 169 ARDHQVRELAASLNVHVETTHGYTLYDQDKVIEKNGG 205
>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
Length = 550
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 20 WFRKGLRMHDNPSL------REGLKGCTTFRCVFILDPWF---------AGSSNVGINKW 64
WFRKGLR+HDNP+L G VF+LDP + GS+ G+ +
Sbjct: 13 WFRKGLRVHDNPALDAARRYGAGAASARRLYPVFVLDPRYLRPDPAASSPGSARAGVARI 72
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQP--ADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
RFLL+ L DLD LR+L SRL ++R + AD + K+W L FE D EP+ RD
Sbjct: 73 RFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALARD 132
Query: 123 QNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ + IEV VSHTL+D ++
Sbjct: 133 KKVTDFALASGIEVFTPVSHTLFDPAEI 160
>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens]
Length = 529
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 49/81 (60%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFRK LR+HDN L E K +F+LDP FA VG ++RFLL+ L DLD +LR
Sbjct: 9 WFRKCLRLHDNAPLVEAAKRGGRLLPIFVLDPHFARPEFVGAPRYRFLLESLADLDASLR 68
Query: 80 KLNSRLFVIRGQPADILPKLF 100
K SRL V+RG+ L LF
Sbjct: 69 KRGSRLCVVRGETEATLDGLF 89
>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 656
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 3 PLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGS 56
P + + E ++ WFR+ LR+HDN ++ L R V + +
Sbjct: 77 PATDSGGGSDDEIRILVWFRRDLRLHDNLAISAALDWIKQEEEKIPGRKVVFIPLYIVHR 136
Query: 57 SNV---GINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
+ G+N+++FLL+ + DL L SRL V RG +L +L W+ + L F+
Sbjct: 137 PKIMLCGVNRFQFLLESVSDLADALAARGSRLVVARGDGVQVLRRLLPAWRISHLFFDAA 196
Query: 114 PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
EPF RD + L R+L +E +TLYDLD + + G
Sbjct: 197 SEPFAIDRDNRAVALARQLGVETHVTHGYTLYDLDAVIAGNNG 239
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++HW R+ LR+ DN +L E + +F LDP +V + ++LL CL +L
Sbjct: 5 VLHWHRRDLRLQDNVALAEARQQSAKVVGIFCLDPAILEKEDVAPARVKYLLACLAELAE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N +K S+L + +G P ++LPK+ + K + + D EP+ + RD + R++ ++
Sbjct: 65 NYQKAGSQLLIFQGNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQVGAKI 124
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 71/138 (51%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ D+ L + + VF LDP +V + +++ CL++L
Sbjct: 5 ILFWHRRDLRISDHKGLAAAREKSSQVVGVFCLDPNILDQDDVAPARVTYMIGCLQELQK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
K+ S+L +++GQP+ +PKL K + + + D EP+ K RDQ + +E+NI V
Sbjct: 65 QYEKVGSQLLILQGQPSSAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEVNIGV 124
Query: 137 IARVSHTLYDLDQLKPDS 154
L+ D+++ S
Sbjct: 125 ETVWDQLLHTPDEIRTKS 142
>gi|390942759|ref|YP_006406520.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
gi|390416187|gb|AFL83765.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
Length = 472
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQ 69
K ++ WFR LR+HD+ +L L+ V+ DP +N+G K +FLLQ
Sbjct: 4 KRLLVWFRNDLRLHDHAALFSALEKSEEIIPVYCFDPRMFKETNLGFRKTGNHRAKFLLQ 63
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+E+L NL+K+ S L ++ G P D++P+ KE + F E+ K + +
Sbjct: 64 AVENLKNNLQKVGSNLLILHGYPEDLIPQKAKELGVQAIYFSEEVTSEEKQVENALENAA 123
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+L IE + TL++L+ L
Sbjct: 124 YKLGIETASFWQITLFNLEDL 144
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFR+ LR+ DN +L T ++L W + G N+ FL LE L N
Sbjct: 9 LHWFRRDLRLTDNTALHAAQTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGNLESLAKN 68
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
L + SRL + G+ + +L +E T L DP+P+G+ + +++ LC +L +
Sbjct: 69 LEAIGSRLIIRSGETVSEIERLIRETGATALYTNRDPDPYGQTIETHVIALCNKLGV 125
>gi|427723364|ref|YP_007070641.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
gi|427355084|gb|AFY37807.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
Length = 475
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++HW R+ LR+HDN +L K VF DP + ++ + ++LL CLE+L
Sbjct: 5 VLHWHRRDLRLHDNVALTRARKQSEKVVGVFCFDPAILTADDMAPARVKYLLACLEELSE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ ++ S L ++ G+P ++LP++ K T + + D EP+ + RD ++ R+ +V
Sbjct: 65 SYCQVGSELLILNGKPVELLPRVTAILKATAVYWNLDVEPYAQKRDHDMAIALRQAGAKV 124
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 62/118 (52%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + + +F LDP ++ + ++L CL +L
Sbjct: 5 IIFWHRRDLRLSDNIGLSKAYQKSSKLVGLFCLDPNILQRDDIAPARVNYMLGCLRNLQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+ +KL +L + +GQP I+P++ K K C+ + D EP+ K RD+ + +E I
Sbjct: 65 SYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKEALQEKGI 122
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG+P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLLIIRGKPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|392391321|ref|YP_006427924.1| deoxyribodipyrimidine photolyase [Ornithobacterium rhinotracheale
DSM 15997]
gi|390522399|gb|AFL98130.1| deoxyribodipyrimidine photolyase [Ornithobacterium rhinotracheale
DSM 15997]
Length = 457
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+++HWFR+ LR+ DN +L ++ +C+FI D + F+LQ L L
Sbjct: 26 YVIHWFRRDLRLKDNTALHHAIQHKIPVKCIFIFDTEILKHLPKQDKRVGFILQQLLALK 85
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+LRKLNS L +++G P++I L ++ + D EP+ RD+ + L + NIE
Sbjct: 86 KSLRKLNSDLLILKGNPSEIWKDLAQDSHLKAVFTNRDYEPYALQRDEKVQRLLTQKNIE 145
Query: 136 VIARVSHTLYD 146
HT D
Sbjct: 146 F-----HTFKD 151
>gi|410626719|ref|ZP_11337472.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
gi|410153820|dbj|GAC24241.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
Length = 433
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGS----SNVGINKWRFLL 68
EK + WFR LR+HDNP+L + CVFI+DP WF S +++G +W FL
Sbjct: 9 EKRGLFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQ 68
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +L NL++ +LFV+ G+ ++L L + + P + + + Q +
Sbjct: 69 QSLSNLQDNLQQQGHQLFVLEGETLEVLDALVGSYTPNIVASGMHPGVYERQQWQRLKQ- 127
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
++ ++ I +H+L+ D L
Sbjct: 128 -KQPDVHFIQENAHSLFQPDTL 148
>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 550
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN----KWRFLLQCLED 73
+HWFR GLR HDNP L + + + ++++DP F + G + FLL+ + +
Sbjct: 13 IHWFRNGLRFHDNPCLLDACQKSESLLPIYVVDPEFPFAQTAGCRAGTIRANFLLESINE 72
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
+D LRK+ S+L V+ G+ ++LP++ + L +E+ E VR+Q+ T+
Sbjct: 73 VDEKLRKMGSQLVVVLGKSHEVLPEIVATTQAKALFYEQ--EAAAPVREQDAETI 125
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|339649212|gb|AEJ87227.1| putative light-receptive cryptochrome [Platynereis dumerilii]
Length = 365
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 54 AGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
AG+ V + +FLL+CL+DLD +L+K RL+V++G ++ +L +EW T +T E D
Sbjct: 5 AGTKLVSYPRMKFLLECLKDLDDSLKKHGGRLYVVKGPSDVVIKQLIEEWGVTRVTCEID 64
Query: 114 PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYD 146
PEP + RD+ + LC ++ SH L+D
Sbjct: 65 PEPIWQPRDKAVKDLCATKGVKWFDYNSHLLWD 97
>gi|379731644|ref|YP_005323840.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
gi|378577255|gb|AFC26256.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
Length = 445
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQCLED 73
K+ + W R+ LR++DN +L + LK +FI D +N + F+ Q L+
Sbjct: 2 KYSIFWHRRDLRLNDNAALYQALKAGGPVLSIFIFDQNILEDLNNRQDARVDFIHQELQR 61
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L LR+L S L V+ G+P + +L ++W + D EP+ K RD I L ++ N
Sbjct: 62 LQKELRELGSDLLVLYGRPQAVWTQLLQDWSIEKVYTNRDYEPYAKKRDAAIAELLQKEN 121
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
I ++ + H +++ +++ + G
Sbjct: 122 IPLLTKKDHVIFEELEVEKKTSG 144
>gi|387812715|ref|YP_005428192.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337722|emb|CCG93769.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 440
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLLQC 70
H ++WF + LR+HDNP+L + CVF++DP WF G +G ++WRFL Q
Sbjct: 2 HTLYWFTRDLRLHDNPALLAAAR-SDMLLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQS 60
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKE 102
L L+ +LR L R+ + G+P +LP+L +E
Sbjct: 61 LMALERSLRPLGQRMHIAWGEPEIVLPELARE 92
>gi|392401812|ref|YP_006438424.1| DNA photolyase FAD-binding protein [Turneriella parva DSM 21527]
gi|390609766|gb|AFM10918.1| DNA photolyase FAD-binding protein [Turneriella parva DSM 21527]
Length = 444
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV-GINKWRFLLQCLEDLDI 76
+HWFR+ LR+ DN +L L CVFI DP + ++ F+ L+ LD
Sbjct: 16 IHWFRRDLRLDDNTALNAALATGLPVMCVFIFDPNILRHLKIKNDSRITFIFDTLQKLDA 75
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+LR S L + P + +LF+ + + ED EP+ + RD + LC+ E
Sbjct: 76 DLRARGSMLRIFFDAPLSVYERLFQSFNVRGIWCNEDYEPYARERDAAVAGLCKAKGAEF 135
Query: 137 IARVSHTLY 145
A H ++
Sbjct: 136 HAHKDHVVF 144
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG P+ L L + F D EP+ + RDQ ++ ++ IEV
Sbjct: 65 NYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQKKGIEV 124
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLLIIRGNPSQTLVNLASNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 9 NPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLL 68
N +S ++ W R+ LR+ DN L + + + +F LD NV + ++L
Sbjct: 39 NLSSMTNSVIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLDTDILNQDNVAPARITYML 98
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
CL+DL + ++L +L + +G P I+P++ K C+ + D EP+ K RD ++
Sbjct: 99 GCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDNQVIEA 158
Query: 129 CRELNIEVIARVSHTLYD 146
+E I S T +D
Sbjct: 159 LQERGIH-----SQTYWD 171
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 9 NPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLL 68
N +S ++ W R+ LR+ DN L + + + +F LD NV + ++L
Sbjct: 39 NLSSMTNSVIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLDTDILNQDNVAPARITYML 98
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
CL+DL + ++L +L + +G P I+P++ K C+ + D EP+ K RD ++
Sbjct: 99 GCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDNQVIEA 158
Query: 129 CRELNIEVIARVSHTLYD 146
+E I S T +D
Sbjct: 159 LQERGIH-----SQTYWD 171
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR++DN L + VF LDP ++ + ++LL CLE L
Sbjct: 2 IIFWHRRDLRINDNIGLAKAYTRDKKVIGVFCLDPNILNRDDIAPARVKYLLGCLEALKT 61
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+KL S L + P +I+P L ++ K + + D EPF + RD+N+ +E +IE
Sbjct: 62 KYQKLGSDLLIFHNTPEEIIPSLAEKLKADAVYWNLDVEPFSRHRDKNVSQALKEKSIET 121
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N + S+L +IRG P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYHQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILERDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
Length = 308
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%)
Query: 97 PKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
P+LFKEWK L++E D EPFGK RD I L E +EV R+SHTLYDLD++
Sbjct: 1 PRLFKEWKINRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVRISHTLYDLDKI 54
>gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
Length = 468
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+HWFR+ LR+ DN +L V+I+ W A G + FL CL+ L N
Sbjct: 5 IHWFRRDLRITDNTALAAAAAAHDQVVPVYIVSEWKAEHRWCGAPRQAFLCGCLDSLARN 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L RL + +G+ +L KL ++ + + F DP+PFG+ ++ + + R+L I +
Sbjct: 65 LEAKGGRLIIRQGRADAVLKKLVQQTEAEAIYFNRDPDPFGRAMEERLTKIARDLGIRL 123
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
T+ + WFR+ LR+HD+P L L VF+LDP + F+L CL
Sbjct: 2 TDSTAIVWFRRDLRLHDHPPLVRALAAHARVVPVFVLDPAIVRGRFASGARTAFMLDCLR 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
+LD +LR+ S L V G+P LP L +E + + D P+ RD+ + +
Sbjct: 62 ELDADLRERGSGLVVREGRPERELPALAREIGAAAVHWASDATPYAIARDRRVRS 116
>gi|361124167|gb|EHK96280.1| putative Cryptochrome-2 [Glarea lozoyensis 74030]
Length = 586
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 68 LQCLEDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ L D+ ++ KLN S+LF++R P + PKLFK WK T L FE+D + + + RD +
Sbjct: 7 IDSLNDVSTSITKLNKKSKLFLLREAPQTLYPKLFKAWKVTHLVFEKDTDAYARDRDAAV 66
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
+ +E +EVI + TL+D D+L
Sbjct: 67 IKAAKEAGVEVIVKSGRTLWDSDEL 91
>gi|424843384|ref|ZP_18268009.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
gi|395321582|gb|EJF54503.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
Length = 445
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQCLED 73
K+ + W R+ LR++DN +L + LK +FI D +N + F+ Q L+
Sbjct: 2 KYSIFWHRRDLRLNDNAALYQALKAGGPVLSIFIFDQNILEDLNNRQDARVSFIHQELQR 61
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L L++L S L V+ G+P + +L ++W + D EP+ K RD + L ++ N
Sbjct: 62 LQKELQELGSDLLVLYGRPKAVWTQLLQDWPINKVYTNRDDEPYAKKRDAAVAELLQKEN 121
Query: 134 IEVIARVSHTLYDLDQLKPDSRG 156
I ++ H +++ +++ + G
Sbjct: 122 IPLLTEKDHVIFEALEVEKKTAG 144
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +IRG P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 56/120 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+HDN L VF LDP +V + +L+ CL L
Sbjct: 5 ILFWHRRDLRLHDNLGLAAARARSPQVTGVFCLDPGILHRDDVAPVRVAYLMNCLAALQG 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L +++G PA +LP L + T L + D EP+ + RD ++ C+E IE+
Sbjct: 65 RYAAAGGELLILQGSPAQVLPNLAQVIAVTALYWNRDVEPYARDRDTHVAAACKEQGIEI 124
>gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 516
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DN + FI+DPWF ++VG + RFL + LE L+ NL+
Sbjct: 5 WFRRDLRLTDNEIVTSSSGNDARVLPFFIIDPWFYTWADVGTARVRFLFESLEKLNSNLQ 64
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTC----LTFEEDPE-PFGKVRDQNIMTLCRELNI 134
KL+SRL++ G I+ +L ++ L F D + +G RD+ I+ ++LN+
Sbjct: 65 KLSSRLYLFEGNSTGIVQELTRQLTERGYKPKLFFNRDVQVEYGINRDKTIVDFYKQLNL 124
Query: 135 E 135
+
Sbjct: 125 D 125
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L E + VF DP S V + ++LL CL++L
Sbjct: 5 ILFWHRRDLRLDDNIGLNEAQQHSNKIVGVFCFDPKLLQSDQVAPARIKYLLGCLKELAA 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+K S L ++ P +PKL + + + + D EP+G+ RD+ + + NI V
Sbjct: 65 GYKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHDVEPYGRKRDRAVQSALEAKNIPV 124
Query: 137 IARVSHTLYD 146
HT++D
Sbjct: 125 -----HTVWD 129
>gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8]
gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Marinobacter aquaeolei VT8]
Length = 440
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLLQCLE 72
++WF + LR+HDNP+L + CVF++DP WF G +G ++WRFL Q L
Sbjct: 4 LYWFTRDLRLHDNPALLAAAR-SDMLLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSLM 62
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKE 102
L+ +LR + RL + G+P +LP+L +E
Sbjct: 63 ALERSLRPMGQRLHIAWGEPEVVLPELARE 92
>gi|375142760|ref|YP_005003409.1| deoxyribodipyrimidine photolyase [Mycobacterium rhodesiae NBB3]
gi|359823381|gb|AEV76194.1| deoxyribodipyrimidine photolyase [Mycobacterium rhodesiae NBB3]
Length = 430
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+HD P+L + ++LDP SS G + ++L L DLD
Sbjct: 6 WFRRDLRLHDLPALLDAASADNEVLACYVLDPRLKASS--GQRRLKYLYDALRDLD---E 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L+ RL+V RG+P +PKL K + + D PFG+ RD + ++ +E
Sbjct: 61 SLDGRLYVTRGRPDQRIPKLVKAIGASSVHVSGDFTPFGRRRDDAVREALGDVPLE 116
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 20 WFRKGLRMHDNPSL-REGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINL 78
W R+ LR+ DNP+L + + + +FI DP S G K F+L CL++L +
Sbjct: 8 WHRRDLRLQDNPALAKAAVIPNSETVGIFIFDPDILKSPETGGGKVDFMLGCLKELQQSY 67
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R+L S L G P ++L KL + K L F +D EP RDQ ++ + IEV
Sbjct: 68 RELGSELLCFYGNPKEVLAKLAQVLKPQRLFFNQDVEPSAIKRDQAVIQELSAIGIEV 125
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF----AGSSNVGIN 62
P + N+++ + W R+ LR+ DNP+L + + +FI DP A G
Sbjct: 2 PKSLNNSQNLTIVWHRRDLRIADNPALDQAIAQNGATIGIFIFDPQILESKAEDQTTGAG 61
Query: 63 KWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
+ F+L CL++L + L S L G PA + + + + F +D EPF + RD
Sbjct: 62 QVDFMLGCLQELQAAYQDLGSDLLFFHGDPAKTIRDIAQTLNAARVFFNQDVEPFARERD 121
Query: 123 QNIMTLCRELNIEVIARVSHTLYDLDQLKPDS 154
+ E+ +EV + + L+ D + +S
Sbjct: 122 RQACAALAEIGVEVKSFLDLALHAPDAISTNS 153
>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
Length = 462
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQ 69
N K +H FR+ LR+ DN SL E L+ C FI D + N +F++
Sbjct: 12 NYKYKIGLHIFRRDLRLEDNTSLIEALQSCERVIPAFIFDDRQIKDNDYKSDNAVQFMIA 71
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
CL++L+ L +LN+RL+ G A ++ L K + +D PF K RD I +C
Sbjct: 72 CLKELNDQLHQLNARLYFFEGLTAKVVESLIKTLGIEAVFVNKDYTPFSKKRDNEIKAIC 131
>gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
Length = 479
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN L VF+LDP ++++ + FLL+ L++L + R
Sbjct: 9 WHRRDLRLVDNLGLAAAAAATLAVTGVFVLDPAILSAADMAPARVWFLLESLKELQASWR 68
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
K S+L +++G PA++LP+L K + + D EP+G+ RD R + + A+
Sbjct: 69 KAGSQLLLLQGDPAEVLPQLAKAIGAGVVAWNRDVEPYGRERD-------RRVAAALQAQ 121
Query: 140 VSHTLYDLDQL 150
L D DQL
Sbjct: 122 GQKVLVDWDQL 132
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN--KWRFLLQCLEDLDINL 78
FR+ LR+ DN LR ++ FI DP A S +G N ++FLL+ LEDL
Sbjct: 12 FRRDLRIDDNLGLRAAVESSDEVIPCFIFDPRLASSKRLGFNPNAFQFLLESLEDLQRQF 71
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+ RL++ G DI+ +L + + ED PF + RD+ C+ L+++
Sbjct: 72 KAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNEDYTPFSRRRDEATRNTCKGLDVK 128
>gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
Length = 504
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN L VF+LDP ++++ + FL + L +L R
Sbjct: 13 WHRRDLRLADNLGLAAAAAATPAVTGVFVLDPGILEAADLAPARLWFLAESLRELAERWR 72
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
SRL V+RG PA +LP+L + L + D EP+G+ RD R + + A
Sbjct: 73 AAGSRLLVLRGDPAVVLPQLAAALRAPVLAWNRDVEPYGRERD-------RRVAAALQAE 125
Query: 140 VSHTLYDLDQL 150
L D DQL
Sbjct: 126 GRRVLVDWDQL 136
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 55/111 (49%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K ++ WFR+ LR+ DN +L VFI D + G + FLL+ L +L
Sbjct: 3 KRILCWFRRDLRLDDNTALLAAYAAAEEVVPVFIFDDAILSRPDTGAVRVAFLLESLRNL 62
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
D NLR SRL + RG+P +L +L E + + F D EPF RD +
Sbjct: 63 DENLRARGSRLLLRRGRPEHVLAQLVTETAASAVYFNRDVEPFALARDARV 113
>gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
10542]
gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
10542]
Length = 450
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGC----TTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+HWFR+ LR+ DNP+L + + +F+LD G S G + +LL L
Sbjct: 4 IHWFRRDLRLADNPALNSAWEQAQADGSQVVGLFVLDDRLWGPS--GSPRRDYLLASLRA 61
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
LD + RL V RG P ++LP + +E + E EPFG+ RD+ + T E +
Sbjct: 62 LD---ESMGGRLVVRRGAPTEVLPAVAREVGARTVHVAESFEPFGRARDEEVETALAEDD 118
Query: 134 IEV 136
+E+
Sbjct: 119 VEL 121
>gi|443309078|ref|ZP_21038849.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
gi|442780877|gb|ELR90999.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
Length = 282
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR DN + FI+DPWF + VG + RFL + LE+LD NLR
Sbjct: 5 WFRRDLRWSDNEIVTLSTADNAEVLPCFIIDPWFYSQAEVGKARVRFLFESLENLDSNLR 64
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTC----LTFEEDPEP-FGKVRDQNIMTLCRELNI 134
S+L++ G +L +L ++ L F D + +G RD+ I+ RE ++
Sbjct: 65 SRGSQLYLFEGSSVSVLQELTRQLLQKGDRPKLFFNHDIQAQYGIERDRQIIDFYREHSL 124
Query: 135 EV 136
E
Sbjct: 125 EY 126
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 61/119 (51%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + + +F LD ++ + ++L CL+ L
Sbjct: 5 IIFWHRRDLRVSDNIGLSQAYQKSSKLVGLFCLDSNLLNRDDIAPARVNYMLGCLQHLQK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+ +KL S+L + +G+P I+PK+ C+ + D EP+ K RD+ + E +I+
Sbjct: 65 SYQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNNDVEPYSKERDKQVKEALEEKSIQ 123
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCT---TFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
W R+ LR+ DNP+L E + +FI DP +K F+L CL +L
Sbjct: 23 WHRRDLRIDDNPALSEAIAQVGDQGKVLGLFIFDPDILDDGVTEGSKVDFMLGCLRELQT 82
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+L S L + G+P L L K T+ L F +D EPF RD+ +E+ ++V
Sbjct: 83 NYRRLGSDLLFMYGEPITSLCSLAKAINTSHLFFNQDVEPFAIKRDREATQALQEIGVKV 142
Query: 137 IARVSHTLYDLDQLKPDS 154
+ D+ + PD+
Sbjct: 143 -----QSFVDIGLIAPDA 155
>gi|433647152|ref|YP_007292154.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
gi|433296929|gb|AGB22749.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
Length = 426
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+HD P L + ++LDP S+ G + ++L L DL
Sbjct: 6 WFRRDLRLHDLPPLLDAAASDGEVLACYLLDPRLTASA--GPRRLQYLYDALRDLH---E 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L+ RL V RG+P ++PKL KE + + D PFG+ RD + + ++ +E
Sbjct: 61 SLDGRLHVTRGRPEKVIPKLAKEIGASSVHVSADYSPFGRRRDVAVRSALGDVALE 116
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 61/111 (54%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K ++ W R+ LR+ DN L K + +F LDP S+ V + ++L CL++L
Sbjct: 3 KLILFWHRRDLRISDNMGLAAARKQSSKIVGLFCLDPNILNSNEVAPARVTYMLGCLQEL 62
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ K+ S+L ++RG+P + +P+L + T + + +D EP+ + RD +
Sbjct: 63 KESYSKIGSQLLIVRGEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKV 113
>gi|404424432|ref|ZP_11006013.1| deoxyribodipyrimidine photo-lyase [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403651393|gb|EJZ06529.1| deoxyribodipyrimidine photo-lyase [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 444
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR HD+P+L E + ++LDP S+ G + R+L + L L
Sbjct: 6 WFRRDLRCHDHPALLEAAQPDGEVLACYVLDPRLEASA--GAPRLRYLYRALRALS---E 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
L+ RL V RG+P + +P L + T + +D PFG+ RD + E +
Sbjct: 61 SLDGRLLVTRGRPEERIPALARAISATSVHISQDYSPFGRRRDDTVQAALGETEL 115
>gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
Length = 479
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 63/121 (52%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP S +V + ++++ CL+ L+
Sbjct: 5 ILFWHRRDLRISDNTGLIAAREQSSKIVGVFCLDPCILNSDDVAPARIKYMMGCLQSLEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ P ++P L + K + + D EP+ ++RD +++ + RE I+
Sbjct: 65 QYTQAGSQLVILYDNPIAVIPALAEALKVKAVFWNWDVEPYAQIRDNDVICVLREKGIQT 124
Query: 137 I 137
+
Sbjct: 125 L 125
>gi|435850828|ref|YP_007312414.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
gi|433661458|gb|AGB48884.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
Length = 452
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
FR+ LR+ DN L E L T FI DP N +F+L ++DL+ L
Sbjct: 9 FRRDLRIDDNTGLIEALHSSHTVLPCFIFDPRLLEDGKYSKNALQFMLGSIKDLEAQLNA 68
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140
L RL++ G P ++ KL E + D PF RD I +C E E
Sbjct: 69 LGGRLYLFSGLPHEVTAKLIGEENIDAVIVNHDYTPFSVHRDGAISAVCAEHGSEF---- 124
Query: 141 SHTLYDLDQLKPDS 154
H +D P S
Sbjct: 125 -HQFHDATLQVPGS 137
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 66/134 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L +F LDP S+++ + +L CL++L
Sbjct: 4 ILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ SRL +++G P ++P+L ++ + + + +D EP+G+ RD + + I
Sbjct: 64 RYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRA 123
Query: 137 IARVSHTLYDLDQL 150
+ L+ DQ+
Sbjct: 124 VQLWDQLLHSPDQI 137
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILERDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +I G P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 66/134 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L +F LDP S+++ + +L CL++L
Sbjct: 5 ILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ SRL +++G P ++P+L ++ + + + +D EP+G+ RD + + I
Sbjct: 65 RYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRA 124
Query: 137 IARVSHTLYDLDQL 150
+ L+ DQ+
Sbjct: 125 VQLWDQLLHSPDQI 138
>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
Length = 480
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR++DN L +F DP +S++ + +L+ CL+ L R
Sbjct: 7 WHRRDLRLNDNLGLAAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQALQEAYR 66
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+L + RG P ILP++ K + + ED EP+G+ RD+ + +E I V
Sbjct: 67 RLGGSFLIFRGDPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAALKEKGIAV 123
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 66/134 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L +F LDP S+++ + +L CL++L
Sbjct: 5 ILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ SRL +++G P ++P+L ++ + + + +D EP+G+ RD + + I
Sbjct: 65 RYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRA 124
Query: 137 IARVSHTLYDLDQL 150
+ L+ DQ+
Sbjct: 125 VQLWDQLLHSPDQI 138
>gi|410621444|ref|ZP_11332291.1| deoxyribodipyrimidine photo-lyase [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158959|dbj|GAC27665.1| deoxyribodipyrimidine photo-lyase [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 490
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WF++ LR+ DN +L+ + T ++I++P ++ I WRF+ Q + DL+
Sbjct: 9 VMWFKRDLRLRDNDALKIASEQKTPLALIYIVEPLMIEDPHMDIRHWRFIFQSITDLNEQ 68
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTT-CLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L + N+ + ++ G D+L KL + + ++ EE VRD++++ CR ++
Sbjct: 69 LAQFNASISILFGNAVDVLSKLLEIYSIKHIVSHEEVGLEHTYVRDKDVLAWCRSHKVK 127
>gi|427711391|ref|YP_007060015.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
gi|427375520|gb|AFY59472.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
Length = 486
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
T+ ++ W R+ LR+ D+ L + +F DP G ++ + +L+ CLE
Sbjct: 12 TQPLILLWHRRDLRIQDHLGLAAAREKTAKVVGLFCFDPKILGGEDIAAVRVAYLVGCLE 71
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DL + S+L +++G+P ++PKL + K L + D EP+ + RD+ + +
Sbjct: 72 DLAQQYHQAGSQLLILQGEPTTVIPKLAQALKAQALYWHCDVEPYAQARDKAVAQALAKA 131
Query: 133 NIEVIARVSHTLYDLDQLKPDS 154
I V T +D + P++
Sbjct: 132 GISV-----QTFWDQLLVAPEA 148
>gi|465501|sp|Q05380.1|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region;
AltName: Full=URF1
gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp. (PCC
6716)
gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.]
Length = 284
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN L + T VF DP +V + +LL CL+ L +
Sbjct: 9 WHRRDLRLADNLGLYAARQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQALKEAYQ 68
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ L +++G P ++P++ K T + + ED EP+ + RD+ + +L I V
Sbjct: 69 QRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDLGIAV 125
>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
Length = 467
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
+V W R+ LR+HDN +L L +F+LDP + FL L LD
Sbjct: 4 VVWWVRRDLRLHDNQALAAALTRARELVPLFVLDPALLAGPTSSQRRNAFLFAALRSLDA 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
LR+ SRL V G+P +LP + +E T + E D P+ + RD+ +
Sbjct: 64 ALRRRGSRLIVRAGRPEQVLPTVVRESGATLVMAEADGSPYARRRDEAV 112
>gi|433602405|ref|YP_007034774.1| Deoxyribodipyrimidine photo-lyase [Saccharothrix espanaensis DSM
44229]
gi|407880258|emb|CCH27901.1| Deoxyribodipyrimidine photo-lyase [Saccharothrix espanaensis DSM
44229]
Length = 455
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
+ V WFR+ LR+ D+P+L + +++LDP S G + RF+ +CL
Sbjct: 32 GVDSSTVVWFRRDLRVDDHPALLAAAERAKNGLALYVLDPRLL--SVAGQPRVRFMFRCL 89
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
LD KL RL V+ G P D++P++ + + + D P+G+ RD +
Sbjct: 90 RALDA---KLGGRLMVVSGDPVDVVPEVARSVGASTVHVSADAGPYGRERDAAV 140
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 58/120 (48%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP ++ + +LL CLE+L+
Sbjct: 5 ILFWHRRDLRLSDNIGLSKARDRSPKIIGVFCLDPAILERDDIAPARVAYLLGCLEELEK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R+ S+L +I G P+ L L + F D EP+ + RDQ ++ + IEV
Sbjct: 65 NYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTKGIEV 124
>gi|254479942|ref|ZP_05093190.1| deoxyribodipyrimidine photolyase superfamily protein [marine gamma
proteobacterium HTCC2148]
gi|214039504|gb|EEB80163.1| deoxyribodipyrimidine photolyase superfamily protein [marine gamma
proteobacterium HTCC2148]
Length = 204
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD---PWFAGSSNVGINKWRF 66
P TE ++WFR LR++DNP+L+ G CVF PW +G + RF
Sbjct: 2 PKVTE---IYWFRSDLRINDNPALQLHC-GVDRLLCVFFWPRDIPW-CNLKGLGRQRERF 56
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
L++ LE L L +L +L V R PA +LP L E+K T + P + ++ ++ +
Sbjct: 57 LIESLEALRAQLAELGQKLLVFRETPAQVLPSLVDEYKVTRIGVARSPGSYERLDEKAVA 116
Query: 127 TLCRELNIEVIARVSHTLYDLDQLK 151
+++ ++ +TL+ L+
Sbjct: 117 A---RVSVPLVVHEGNTLFSEKALQ 138
>gi|389871451|ref|YP_006378870.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
gi|388536700|gb|AFK61888.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
Length = 473
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 59/131 (45%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LRM DN L + L+ C T C+F+ D + + F+ CL+DL L+
Sbjct: 2 WFRRDLRMTDNRPLFQALRQCETVFCLFVFDTHILSTLPPDDRRVAFIDACLDDLQRQLQ 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+ S L V G P ++P + + + D EP K RD+ + N E
Sbjct: 62 QAGSGLIVRHGTPQQMIPDIAQALNVEAVFAGSDYEPQAKERDREVSARLAADNREFFLF 121
Query: 140 VSHTLYDLDQL 150
++D D++
Sbjct: 122 KDQVIFDTDEI 132
>gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
Length = 433
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLEDLD 75
FR+ LR+ DN L + L+ C FILDP G+ N IN F++ L +L+
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAIN---FMINSLNELN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
LRK SRL+V G +++ L K+ + ED PF K+RD+ I C +
Sbjct: 64 DELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYCED 117
>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica
T6c]
gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudoalteromonas atlantica T6c]
Length = 445
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGS----SNVGINKWRFLLQ 69
K + WFR LR+HDNP+L + CVFI+DP WF S +++G +W FL Q
Sbjct: 10 KRGIFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQQ 69
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKL 99
L +L +L++ +LFV+ G+ ++L L
Sbjct: 70 SLSELQRHLQEQGQQLFVLEGETLEVLDAL 99
>gi|229583833|ref|YP_002842334.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
Length = 433
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLEDLD 75
FR+ LR+ DN L + L+ C FILDP G+ N IN F++ L +L+
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAIN---FMINSLNELN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
LRK SRL+V G +++ L K+ + ED PF K+RD+ I C +
Sbjct: 64 DELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYCED 117
>gi|379748449|ref|YP_005339270.1| phr protein [Mycobacterium intracellulare ATCC 13950]
gi|379755734|ref|YP_005344406.1| phr protein [Mycobacterium intracellulare MOTT-02]
gi|378800813|gb|AFC44949.1| phr protein [Mycobacterium intracellulare ATCC 13950]
gi|378805950|gb|AFC50085.1| phr protein [Mycobacterium intracellulare MOTT-02]
Length = 442
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L +G C F+LDP SS G + +FL L L +L
Sbjct: 6 WFRRDLRLRDHPALLAAAEGGEVLAC-FVLDPRLESSS--GQRRLQFLGDSLRRLRADL- 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ RL V RG+P +P++ KE T + ED PFG RD+ +
Sbjct: 62 --DGRLLVTRGRPDTQIPRIAKEIGATSVHISEDFAPFGTRRDERV 105
>gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
Length = 416
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
H + WFR LR+HDN L + +K T+ V+I++ +K +FL+ L L
Sbjct: 3 HNIFWFRNNLRIHDNYPLVQCIKDSTSISFVYIVNRHLRVLDGHENHKNKFLIDALNQLK 62
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
INL L L++I G+P+DI L K+++ + E+ P+ + +I +
Sbjct: 63 INLSDLGHELYIIEGEPSDIFSSLAKQYQINKIYCEKIVSPYETDEELSITQ------TD 116
Query: 136 VIARVSHTLYDLDQLKPD 153
V++ TL ++D L D
Sbjct: 117 VLSFWDSTLLNIDDLDFD 134
>gi|385775002|ref|YP_005647570.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
Length = 433
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLEDLD 75
FR+ LR+ DN L + L+ C FILDP G+ N IN F++ L +L+
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAIN---FMINSLNELN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
LRK SRL+V G +++ L K+ + ED PF K+RD+ I C +
Sbjct: 64 DELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYCED 117
>gi|123967845|ref|YP_001008703.1| DNA photolyase [Prochlorococcus marinus str. AS9601]
gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
Length = 477
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W RK LR+ DN +L + +I D ++ N W FL L++L
Sbjct: 6 ILFWHRKDLRIFDNQALIKAFSLSNAITSTYIFDKNYSHDFNASSRAW-FLGNSLQELGN 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N +K+ SRL + G P I+PKL K+ + + EP+ RD I +E NI+V
Sbjct: 65 NWKKMGSRLVMEEGDPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKEQNIQV 124
Query: 137 IARVSHTLYD 146
I H L +
Sbjct: 125 IETWDHLLVE 134
>gi|443309426|ref|ZP_21039144.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
gi|442780516|gb|ELR90691.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
Length = 242
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DN + FI+DPWF + VG + RFL + LEDLD NL+
Sbjct: 5 WFRRDLRLSDNEIVALSTADNAEVLPCFIIDPWFYQQAEVGKARVRFLFEALEDLDRNLK 64
Query: 80 KLNSRLFVIRGQPADILP----KLFKEWKTTCLTFEEDPE-PFGKVRDQNIMTLCRELNI 134
S+L+++ G ++ +L ++ L F +D + +G RD I+ ++ N+
Sbjct: 65 SRGSQLYLLEGNSLSVIQGLTRQLLQKGDRPKLFFNQDVQVQYGIERDLQIINYYKQHNL 124
>gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
Length = 478
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W+RK LR+ DN +L + + +I D ++ N W FL L++L
Sbjct: 6 ILFWYRKDLRIFDNQALNKAISLSNAITSTYIFDENYSHDFNANSRAW-FLANSLQELGN 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N K+ SRL + +G P I+P+L K + + + EP+ RD I +E NI+
Sbjct: 65 NWNKMGSRLVIEKGDPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIKKNLKEKNIQF 124
Query: 137 IARVSHTLYD 146
I H L +
Sbjct: 125 IESWDHLLVE 134
>gi|229583293|ref|YP_002841692.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
Length = 433
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLEDLD 75
FR+ LR+ DN L + L+ C FILDP G+ N IN F++ L +L+
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAIN---FMINSLNELN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
LRK SRL+V G +++ L K+ + ED PF K+RD+ I C +
Sbjct: 64 DELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYCED 117
>gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2]
gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(photoreactivating enzyme). (phrB) [Sulfolobus
solfataricus P2]
Length = 433
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLEDLD 75
FR+ LR+ DN L + L+ C FILDP G+ N IN F++ L +L+
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAIN---FMINSLNELN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
LRK SRL+V G +++ L K+ + ED PF K+RD+ I C +
Sbjct: 64 DELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYCED 117
>gi|385772287|ref|YP_005644853.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
Length = 433
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW--RFLLQCLEDLDINL 78
FR+ LR+ DN L + L+ C FILDP G+ N +++ F++ L +L+ L
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAINFMINSLNELNDEL 66
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
RK SRL+V G +++ L K+ + ED PF K+RD+ I C +
Sbjct: 67 RKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYCED 117
>gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
HTCC2181]
gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
HTCC2181]
Length = 465
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
WFR+ LR+HDN +L L CVFI D + + F+ + L ++ +L
Sbjct: 2 WFRRDLRLHDNHALHHALSQSDNVYCVFIFDKNILNDLKSKEDQRIEFIWEALSEMKASL 61
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
L+S + VI G P +P L K++ L F +D E + RD IM ++
Sbjct: 62 NSLSSDITVIHGDPIHAIPLLLKKYDCEALFFNKDYESYANKRDMRIMEHIQQ 114
>gi|409123337|ref|ZP_11222732.1| deoxyribodipyrimidine photolyase [Gillisia sp. CBA3202]
Length = 432
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
+K + WFR+ LR+ DN L E LKG +FI D + F+ L+
Sbjct: 2 NKKVSIFWFRRDLRLDDNVGLLEALKGDFPVLPIFIFDSEILDDLPKNDARLSFIFDTLQ 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
++ L+ S L + G+PA I LF ++ + D EP+ K RD+ I L +
Sbjct: 62 NIRKELQSSGSSLAMFFGKPAAIFKDLFDQYDVQKIFTNRDYEPYAKQRDEKIEKLASDN 121
Query: 133 NIEVIARVSHTLYDLDQL 150
N E + +++ D++
Sbjct: 122 NSEFLTFKDQVIFEKDEV 139
>gi|227829309|ref|YP_002831088.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
gi|284996667|ref|YP_003418434.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
Length = 433
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLEDLD 75
FR+ LR+ DN L + L+ C FILDP G+ N IN F++ L +L+
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAIN---FMINSLNELN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
LRK SRL+V G +++ L K+ + ED PF K+RD+ I C
Sbjct: 64 DELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYC 115
>gi|238618755|ref|YP_002913580.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
Length = 433
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLEDLD 75
FR+ LR+ DN L + L+ C FILDP G+ N IN F++ L +L+
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAIN---FMINSLNELN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
LRK SRL+V G +++ L K+ + ED PF K+RD+ I C +
Sbjct: 64 DELRKRGSRLYVYFGLAEEVIKNLLKD--VDAVYLNEDYTPFSKMRDERIRRYCED 117
>gi|372210250|ref|ZP_09498052.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium S85]
Length = 428
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WFR+ LR DN L + L+ +FI D + + F+ + L +D
Sbjct: 6 VFWFRRDLRTFDNTGLNKALQSSNPVLPIFIFDEHILDELPIKDARVTFIYKALAAIDKE 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
L+K S L V++G+P ++ +LFK+++ + +D EP+ RD+ I L +E
Sbjct: 66 LKKHQSSLLVLQGKPEEVWQQLFKDYQIQEVFTNKDYEPYALNRDRAIYKLTKE 119
>gi|354612754|ref|ZP_09030696.1| DNA photolyase FAD-binding [Saccharomonospora paurometabolica YIM
90007]
gi|353222892|gb|EHB87187.1| DNA photolyase FAD-binding [Saccharomonospora paurometabolica YIM
90007]
Length = 454
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F + LR+HDNP+LR + G +F++D + G N+ FL +CL DLD LR+
Sbjct: 8 FTRDLRVHDNPALRAAVDGAERVIPLFVVDSRLVATGYPGGNRAAFLARCLADLDAGLRE 67
Query: 81 LNSRLFVIRGQPADILPKLFKE 102
RL + G PAD + L +E
Sbjct: 68 RGGRLMIRTGDPADRVRGLVEE 89
>gi|87304172|ref|ZP_01086694.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
gi|87281427|gb|EAQ73501.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
Length = 180
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA----GSSNVGINKWRFLLQCLE 72
++WF + LR+HDN SL K C++++DP WFA S +G ++WRFL Q L
Sbjct: 4 LYWFTRDLRLHDNASLLAASKSDMLL-CLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSLM 62
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKL 99
L+ +LR L RL + G+P ++P+L
Sbjct: 63 ALERSLRPLGQRLHIAFGEPETVIPQL 89
>gi|434387065|ref|YP_007097676.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018055|gb|AFY94149.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 511
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DN + FI+DPWF +++G + RFL + L DLD L+
Sbjct: 5 WFRRDLRLTDNEIVTLATADNAPVLPFFIIDPWFYTWADIGTARVRFLFESLIDLDRQLQ 64
Query: 80 KLNSRLFVIRGQPADIL----PKLFKEWKTTCLTFEEDPE-PFGKVRDQNIMTLCRELNI 134
+L SRL + G ++ +L + L F D + +G RD+ I+ RELN+
Sbjct: 65 ELGSRLVLFEGNSTTVIQNLTTQLIDRGQRPKLFFNRDVQVEYGISRDRAIVDFYRELNL 124
Query: 135 E 135
+
Sbjct: 125 D 125
>gi|284041014|ref|YP_003390944.1| DASH family cryptochrome [Spirosoma linguale DSM 74]
gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
Length = 487
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKW-----RFLLQC 70
+++WFR LR+HDN L+ VF+ DP WFA S + + FLL+
Sbjct: 4 ILYWFRNDLRLHDNEGFVRALENADQVLPVFVFDPRWFARHSQLEFRRMSAFRANFLLES 63
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
+ DL +LR + L V G+PAD+L +L E T + ++ ++ + T +
Sbjct: 64 VADLRQSLRSRGADLIVRVGKPADVLAELAGEIGATAVYASKEVTHEETTQETKLSTKLK 123
Query: 131 ELNIEVIARVSHTLYDLDQL 150
LNI++ TLY + L
Sbjct: 124 PLNIDIELFWMSTLYHVRDL 143
>gi|358451749|ref|ZP_09162182.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
gi|357224218|gb|EHJ02750.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
Length = 440
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA----GSSNVGINKWRFLLQCLE 72
++WF + LR+HDN SL K C++++DP WFA S +G ++WRFL Q L
Sbjct: 4 LYWFTRDLRLHDNASLLAASK-SDMLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSLM 62
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKL 99
L+ +LR L RL + G+P ++P+L
Sbjct: 63 ALERSLRTLGQRLHIAFGEPETVIPQL 89
>gi|325003004|ref|ZP_08124116.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia sp. P1]
Length = 464
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR+ LR+ D P+ +F+LDP S G + FL CL +LD
Sbjct: 6 AVVWFRRDLRVADQPTFLAAADAADRALALFVLDPALLDPS--GAARRNFLYGCLRELD- 62
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L RL V++G PAD++P++ + D P+G+ RD+ + + E+
Sbjct: 63 --SALGGRLLVVKGDPADVVPRVATAVGADTVHVAADYGPYGRERDEQVEKALTDAGAEL 120
Query: 137 I 137
+
Sbjct: 121 V 121
>gi|333983407|ref|YP_004512617.1| deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
gi|333807448|gb|AEG00118.1| Deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
Length = 453
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPW----FAGSSNVGINKWRFLLQCLEDLDI 76
FR+ LR++DN L L+ FI DP A S G+ +F+L+ L+DL
Sbjct: 12 FRRDLRLYDNSGLNAALQQSEQVLACFIFDPRQIEPHAYQSQPGL---QFMLEALQDLQQ 68
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R +L + +GQP ++ +L +E + D PFG+ RD ++ T CR+ +
Sbjct: 69 QFRTHQWQLGLYQGQPEQLVSRLHREQAFEAIFVNRDYTPFGRRRDADLQTFCRKQGLAF 128
Query: 137 IA 138
+
Sbjct: 129 YS 130
>gi|383775319|ref|YP_005459885.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
gi|381368551|dbj|BAL85369.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
Length = 443
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F + LR+HDNP+L E G +++LDP AG S N+ RFL QCL DL LR+
Sbjct: 8 FTRDLRVHDNPALAEACAGAERVIPLYVLDPTLAGLSG---NRSRFLHQCLADLREQLRE 64
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140
L V G P ++ +E + D + + R++ + I V
Sbjct: 65 RGGDLVVRTGDPVAEAIRVAREHDAATIHLAADVSGYARRRERRLTDEGERHRIAVRLHP 124
Query: 141 SHTLYDLDQLKPDSRG 156
T+ D L+P G
Sbjct: 125 GVTVVDPGVLRPGGGG 140
>gi|385333757|ref|YP_005887708.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
Length = 440
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA----GSSNVGINKWRFLLQCLE 72
++WF + LR+HDN SL K C++++DP WFA S +G ++WRFL Q L
Sbjct: 4 LYWFTRDLRLHDNASLLAASK-SDMLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSLM 62
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKL 99
L+ +LR L RL + G+P ++P+L
Sbjct: 63 ALERSLRPLGQRLHIAFGEPETVIPQL 89
>gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
Length = 510
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN L VF+LDP G+ ++ + FLL+ L +L + R
Sbjct: 9 WHRRDLRLADNLGLATAAAATPAVTGVFVLDPAILGAPDMAPARVWFLLESLRELQQSWR 68
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFG 118
+ SRLFV+ G P +LP+L + + + D EP+G
Sbjct: 69 EAGSRLFVLEGDPEQVLPQLAEALAAPVVAWNRDVEPYG 107
>gi|400537115|ref|ZP_10800649.1| deoxyribodipyrimidine photo-lyase [Mycobacterium colombiense CECT
3035]
gi|400330128|gb|EJO87627.1| deoxyribodipyrimidine photo-lyase [Mycobacterium colombiense CECT
3035]
Length = 442
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L + C F+LDP SS G + R+L L L +L
Sbjct: 6 WFRRDLRLRDHPALLAAAENDGVLAC-FVLDPRLEKSS--GQRRLRYLGDSLRRLRDDL- 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ RL V RGQP +P++ KE + + ED PFGK RD+ +
Sbjct: 62 --DGRLLVTRGQPHTQIPRIAKEIDASSVHVSEDFTPFGKRRDERV 105
>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
Length = 435
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAG----SSNVGINKWRFLLQ 69
K + WFR LR+ DNP+L + C++ ++P WF S VG + WRF+ +
Sbjct: 2 KRALLWFRHDLRLDDNPALLRAAQAKEALLCLYCIEPRWFVADNWQSRRVGDHPWRFISE 61
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFK-EW--KTTCLTFEEDPEPFGKVRDQNIM 126
L DL L L +L + G P ++P L + W K C PFG+ + +
Sbjct: 62 SLLDLANRLEALGQQLVIRIGDPNTLIPGLMRNHWIDKLICTA------PFGEEERRQYL 115
Query: 127 TLCRELN---IEVIARVSHTLYDLDQL 150
L +E+ EV SHTL+ L+QL
Sbjct: 116 ALKQEVGEHRCEVWQ--SHTLFTLEQL 140
>gi|321451724|gb|EFX63284.1| hypothetical protein DAPPUDRAFT_335673 [Daphnia pulex]
Length = 141
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 64/150 (42%), Gaps = 55/150 (36%)
Query: 17 MVHWFRKGLRMHDNPSL------REG-------LKGCT-----TFRCV-FILDPWFAGSS 57
+ HWFRKGL +P+L REG + C R V ILDPWF
Sbjct: 7 VTHWFRKGL----HPALLSFECPREGKIVFNHAFQSCVGESNYELRPVKVILDPWFVK-- 60
Query: 58 NVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF 117
N+R+ P D K FKEW LTFE D EP+
Sbjct: 61 ------------------------NARM------PRDHQQKYFKEWNIKKLTFEVDIEPY 90
Query: 118 GKVRDQNIMTLCRELNIEVIARVSHTLYDL 147
K +D+ I L ++ V+A+VSHT+YDL
Sbjct: 91 AKTQDEEIKKLADHHSVPVVAKVSHTIYDL 120
>gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
Length = 443
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS-----NVGINKWRFLLQCLE 72
++WF LR+HDNP L + + C + CV+ ++P + +VG + RFLLQ L+
Sbjct: 6 LYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPQKQQFNRYQLVSVGEIRHRFLLQALQ 65
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L NL L RL V++ P +P L +++ L + + + + + C
Sbjct: 66 ALQSNLATLGQRLLVMQADPMLSMPVLIEQYGIN-LIYRSRHCGWYEQQQWRYLKQCYP- 123
Query: 133 NIEVIARVSHTLYDLDQL 150
++ + +HTLY DQL
Sbjct: 124 HLRFVEVDTHTLYSQDQL 141
>gi|444377559|ref|ZP_21176769.1| Cryptochrome [Enterovibrio sp. AK16]
gi|443678340|gb|ELT85011.1| Cryptochrome [Enterovibrio sp. AK16]
Length = 427
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA----GSSNVGINKWRFLLQCLEDL 74
WFR LR+ DNP+L + C V+++DP WF S ++G + FL Q L L
Sbjct: 6 WFRHDLRLADNPALVALSRRCDQALMVYVIDPEWFRPAHFQSRHLGRFREEFLYQSLRAL 65
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+ L+K RL V G P ++P L K+ L + P G Q + L R L
Sbjct: 66 ERELKKRKQRLVVKVGNPLQVIPDLCKKHGIDLLAVTDHP---GVYERQQVAYLSRTLGC 122
Query: 135 EVIARVSHTLYDLDQLKPD 153
EV S +L+ QL D
Sbjct: 123 EVSVSESFSLFLRSQLTFD 141
>gi|409098421|ref|ZP_11218445.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 424
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQ 69
K ++ WFR LR+HDN L E + + V+ILDP G + G K +F+L+
Sbjct: 3 KKILVWFRNDLRLHDNEMLVEAISKSDSILPVYILDPRSFGETKYGTLKTGNIRAQFILE 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+ L +L+++ L + G P DI+P L +E++ T + + + ++ TL
Sbjct: 63 SVLGLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEVYHHREVAR----EETHVSTLV 118
Query: 130 R----ELNIEVIARVSHTLYDLDQL 150
+L + + + HTLY+ + L
Sbjct: 119 ENALWKLRVNLKHFIGHTLYNKEDL 143
>gi|33860843|ref|NP_892404.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 478
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W RK LR+ DN +L + +I D ++ N W FL L++L
Sbjct: 6 ILFWHRKDLRIFDNQALIKAFSLSDAITSTYIFDKNYSHDFNASSRAW-FLGNSLQELGN 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N +K+ SRL + G P I+P+L K+ + + EP+ RD I +E NI+V
Sbjct: 65 NWKKMGSRLVLEEGDPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKEQNIQV 124
Query: 137 IARVSHTL 144
I H L
Sbjct: 125 IETWDHLL 132
>gi|126695647|ref|YP_001090533.1| DNA photolyase [Prochlorococcus marinus str. MIT 9301]
gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
Length = 478
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W RK LR+ DN SL + +I D + N W FL L++L
Sbjct: 6 ILFWHRKDLRIFDNQSLIKAFSLSNAITSTYIFDKNYPHDFNANSRAW-FLGNSLQELGN 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N +K+ SRL + G P I+P+L K+ + + + EP+ RD I E NI+V
Sbjct: 65 NWKKMGSRLIMEEGDPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEEQNIQV 124
Query: 137 IARVSHTL 144
I H L
Sbjct: 125 IETWDHLL 132
>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
Length = 493
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFI---------LDPWFAGSSNVGI 61
N T + WFR+ LR D+ +L LK C CVF+ +D W A
Sbjct: 2 NDTFDTALVWFRRDLRTTDHAALYHALKHCERVWCVFVFDTTILQPLIDTWQARHPGAPA 61
Query: 62 NKWR--FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
R F+L L +LD LR L V+ G PAD++PKL E + + D EP
Sbjct: 62 QDRRVEFILASLRELDDALRAQGGGLIVLYGDPADLVPKLADELRVDAVFANHDYEPAAI 121
Query: 120 VRDQNI 125
RD+ +
Sbjct: 122 ERDETV 127
>gi|373954151|ref|ZP_09614111.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
gi|373890751|gb|EHQ26648.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
Length = 493
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-----AGSSNVGINKWR 65
N +EK ++ WFR LR+HDN L E L+ VF D ++ G+ G + R
Sbjct: 8 NMSEKTILVWFRNDLRIHDNEILVEALRKADKVLPVFCFDNFYFKITRYGTRKTGDFRTR 67
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106
FLL+ + DL L++ + L V G P DI+P+L +E+ +
Sbjct: 68 FLLEAVADLRKTLQQHGAELIVRSGDPVDIIPQLAEEYHVS 108
>gi|229578080|ref|YP_002836478.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
Length = 433
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLEDLD 75
FR+ LR+ DN L + L+ C FILDP G+ N IN F++ L +L+
Sbjct: 7 FRRDLRLDDNTGLIKALEDCEKVIPAFILDPRQVGNENEYKSEFAIN---FMINSLNELN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
LRK SRL+V G + + L K+ + ED PF K+RD+ I C +
Sbjct: 64 DELRKRGSRLYVYFGLAEEEIKNLLKD--VDAVYLNEDYTPFSKMRDERIRKYCED 117
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN L VF+LDP + + FLL+ L +L R
Sbjct: 7 WHRRDLRLADNLGLAAVSAITPEVMGVFVLDPAELEHPTMAPARRWFLLESLRELQQRWR 66
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+ S+L ++ G P ++LP+L ++ + + D EP + RD+ + + + + V A
Sbjct: 67 QAGSQLLLLEGNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAALKAIGVRVAAD 126
Query: 140 VSHTLYDLDQLK 151
L +QLK
Sbjct: 127 WDQLLVPPEQLK 138
>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 568
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRC-VFILDPWFAGSSNV---GINKWRFLLQCLEDLD 75
WFR+ LR+HDN +L L+ + V ++ + + G N+++F+L+ + DL
Sbjct: 6 WFRRDLRLHDNLALNAALQHIEEAKSDVELISLYIIHRPQIMRCGANRFQFVLESVADLS 65
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L + S+L V +G +L ++ W T + F+ EP+ RD + L + L ++
Sbjct: 66 GALAERGSKLVVAKGDSIQVLRRVLPAWDITHMFFDGVCEPYAVERDDRALALAKSLGVQ 125
Query: 136 VIARVSHTLYDLD 148
+ LYDL+
Sbjct: 126 THVTKGYNLYDLE 138
>gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
Length = 435
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR------FLLQCLEDL 74
FR+ LR+ DN L L+ C VF+LDP +G N ++ F++ L DL
Sbjct: 7 FRRDLRLDDNTCLLRALQECDEVVPVFVLDP-----RQLGDNPYKSAFALGFMVDSLLDL 61
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
D+ L+ +SRL +++G P +LP+L K + F ED PF RD I R
Sbjct: 62 DMQLKHRSSRLHILQGYPEKVLPEL----KVEAIYFNEDYTPFSLNRDNAIRETMR 113
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCV----FILDPWF----AGSSNVGINKWR 65
++ + WFR+ LR+HDN +L ++ + L P + G +++
Sbjct: 96 KRRAIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYILHRPKRQRCGPVRFQ 155
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLL+ +EDL ++ KL+ RL V+ G ++L + W T L FE + RD +
Sbjct: 156 FLLEAIEDLARSIAKLDGRLLVLSGDAEEVLRTVIAAWGVTDLFFEAGVAHYAVDRDNRV 215
Query: 126 MTLCRELNIEVIARVSHTLYD 146
+ + L++ V TLY+
Sbjct: 216 RAIAKSLDVNVTTIRGVTLYN 236
>gi|123965553|ref|YP_001010634.1| DNA photolyase [Prochlorococcus marinus str. MIT 9515]
gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
Length = 478
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W RK LR++DN +L + +I D ++ N W FL L++L
Sbjct: 6 ILFWHRKDLRIYDNNALSKAFSLSNAITSTYIFDQNYSQDFNANSRAW-FLGNSLQELSR 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N L SR+ + G P ++PKL + + + + EP+ RD I ++ IE+
Sbjct: 65 NWETLGSRMIIDEGNPLTLIPKLAQLIDAKFVAWNKAIEPYEINRDLEIKNTLKKFKIEI 124
Query: 137 IARVSHTLYDLDQLKPDS 154
I H L + Q+ S
Sbjct: 125 IELWDHLLLEPSQIHTGS 142
>gi|377567210|ref|ZP_09796444.1| deoxyribodipyrimidine photo-lyase [Gordonia sputi NBRC 100414]
gi|377525570|dbj|GAB41609.1| deoxyribodipyrimidine photo-lyase [Gordonia sputi NBRC 100414]
Length = 430
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 20 WFRKGLRMHDNPSLREGL-KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINL 78
W R+ LR+ D P+L E + G F+LDP SS G + FL L +LD
Sbjct: 3 WLRRDLRLGDLPALGEAIGDGNREVLVCFVLDPRLESSS--GERRLAFLYDSLRELDA-- 58
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
KL+ +L V+RG+P + +P+L + ED PFG+ RD ++T E
Sbjct: 59 -KLDGKLLVVRGRPDEEIPRLVDAVGAGSVHVSEDFSPFGRRRDDAVVTALEE 110
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLK----------GCTTFRCVFILDPWFAGSSNVGINKW 64
+ + WF++ LRMHDN +L ++ G V+IL G ++
Sbjct: 117 RRAIVWFKRDLRMHDNLALDAAVRAQQLLQRAGGGDMALLPVYILHR--PKHQRCGAVRF 174
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
+FLL+ +EDL +++ L RL V+RG ++L + W T L FE + RD
Sbjct: 175 QFLLEAVEDLAKSIKNLQGRLLVLRGDADEVLRAVMTAWGITDLFFEAGVMLYSVARDNR 234
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ + L+++V + TLYD
Sbjct: 235 VRAVAETLDVKVTSIRGVTLYD 256
>gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
gi|384432815|ref|YP_005642173.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
Length = 431
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW--RFLLQCLEDLDINL 78
FR+ LR+ DN L + L C FILDP G N +++ F++ L +L+ L
Sbjct: 7 FRRDLRLDDNTGLIKALGNCEKVIPTFILDPRQVGDENQYKSEFAINFMINSLNELNDEL 66
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
K SRL+V G +++ L K+ + ED PF K+RD+ I C E
Sbjct: 67 GKRGSRLYVYFGLAEEVIKSLLKD--VDAVYLNEDYTPFSKMRDERIRKYCEE 117
>gi|395802067|ref|ZP_10481321.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
gi|395435798|gb|EJG01738.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
Length = 431
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
+ +K + WFR+ LR+ DN L L+ +FI D + F+ L
Sbjct: 2 TKQKVTLFWFRRDLRLEDNTGLFHALQSNFPVVPLFIFDDDILDRLPKNDARVTFIYDSL 61
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
+ ++ L KL+S + + +G+ D+ L +++ + F +D EPF RD I L +E
Sbjct: 62 QKVNSELNKLDSSILIKKGKTKDVWKSLIEKFDIQSVFFNKDYEPFAIKRDTAITALLKE 121
Query: 132 LNIEVIARVSHTLYDLDQL 150
NIE H +++ ++
Sbjct: 122 NNIETFFYKDHVIFEEKEI 140
>gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
hollisae CIP 101886]
gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
hollisae CIP 101886]
Length = 427
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WF----AGSSNVGINKWRFLLQCLEDL 74
WFR LR+ DNP+L + C+ VF+++P WF S ++G + FL Q L L
Sbjct: 6 WFRHDLRLADNPALITLSRRCSKALMVFVINPEWFRPAHYQSRHLGRFREEFLYQSLRSL 65
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+ L+K RL V G P ++P L K+ + + P G Q + L R L
Sbjct: 66 ERELKKHKQRLVVKVGNPLLVIPDLCKKHGIDMVAMTDHP---GVYERQQVAYLSRTLRS 122
Query: 135 EVIARVSHTLYDLDQLKPD 153
EV S TL+ QL D
Sbjct: 123 EVSVSESFTLFLRSQLAFD 141
>gi|325105098|ref|YP_004274752.1| DASH family cryptochrome [Pedobacter saltans DSM 12145]
gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
Length = 433
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+HDN L E T V+I DP + ++ G K +F++ + DL
Sbjct: 9 WFRNDLRIHDNEILIEATLKSTEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFIIDSVTDL 68
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEW 103
+L+ L L V++G+P ++LP+L KE+
Sbjct: 69 KKSLKALGGDLLVVKGKPEEVLPQLIKEY 97
>gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
Length = 443
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS-----NVGINKWRFLLQCLE 72
++WF LR+HDNP L + + C + CV+ ++P + +VG + RFLLQ L+
Sbjct: 6 LYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPKKQQFNRYQLISVGEIRHRFLLQALQ 65
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L NL L RL V++ P +P L +++ L + + + + + C
Sbjct: 66 ALQSNLATLGQRLLVMQADPMVSMPVLIEQYGIN-LIYRSRHCGWYEQQQWCYLKQCYP- 123
Query: 133 NIEVIARVSHTLYDLDQL 150
++ + +HTLY DQL
Sbjct: 124 HLRFVEVDTHTLYSQDQL 141
>gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
Length = 445
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+HD P+L + +G ++LDP S+ G + ++L L DL
Sbjct: 6 WFRRDLRLHDLPALVDAAQGDGQVLACYVLDPRLHRSA--GPRRLQYLHDALRDL---RD 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ RL V RG+P +P L K + + D PFG+ RD + E+ ++
Sbjct: 61 QLDGRLLVTRGRPEQRIPALAKSIDASAVYVSGDFTPFGRRRDDAVRKALGEVPLQ 116
>gi|332662834|ref|YP_004445622.1| DASH family cryptochrome [Haliscomenobacter hydrossis DSM 1100]
gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
Length = 454
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGI---NKWR-- 65
+ ++ + WFR+ LR+HDN +L++ L+ VFI D F G ++ G K+R
Sbjct: 2 TMKRRAIVWFRQDLRLHDNEALQDALRNAYEVIPVFIFDERTFKGKTSFGFPKTGKYRAQ 61
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL 108
F+++ + DL +LRKLNS L V G+ DIL + KE KT+ +
Sbjct: 62 FIIESVADLRQSLRKLNSDLIVRVGKTEDILFSMAKECKTSWI 104
>gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
Length = 496
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN +L L+ C CVF+ D + + F+ Q L +LD LR
Sbjct: 11 WLRRDLRLADNAALYHALQQCEKLYCVFVFDDSILAALPRADRRVEFICQSLAELDAALR 70
Query: 80 KLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ R L RG P DI+P L ++ + +D EP RD +
Sbjct: 71 ETTGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAALARDAQV 120
>gi|409195416|ref|ZP_11224079.1| DASH family cryptochrome [Marinilabilia salmonicolor JCM 21150]
Length = 433
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSS------NVGINKWRFLLQ 69
+++WFR LR+HDNP+L L +FI D WF S G+ + +FL +
Sbjct: 13 IIYWFRNDLRIHDNPALTMALSEGNPVIPIFIADNIWFETSHPELNFPRTGLFRKQFLAE 72
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L DLD L+K + L++ +G A IL KL K++ + + + +Q +
Sbjct: 73 SLADLDKTLKKFDRTLYIFKGDTAKILKKLVAHTKSSKIVAQREIADEEATIEQRV---S 129
Query: 130 RELNIEVIARVSHTLYDLDQL 150
R++++E+ LY DQ+
Sbjct: 130 RDMHLEL--HWGSMLYQPDQI 148
>gi|363422380|ref|ZP_09310456.1| deoxyribodipyrimidine photo-lyase [Rhodococcus pyridinivorans AK37]
gi|359732979|gb|EHK81983.1| deoxyribodipyrimidine photo-lyase [Rhodococcus pyridinivorans AK37]
Length = 461
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
S + + WFR+ LR++D P+L + +F+LD S G + FL+ C
Sbjct: 9 GSMARPSIIWFRRDLRLNDLPTLLSATEAADDVLALFVLDDALLRPS--GARRRDFLMGC 66
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+ LD R L RL V++G P ++P++ E+ + D P+G RD+ +
Sbjct: 67 LQALD---RDLGGRLLVVQGDPMMLVPQVAAEFDAAAVHISSDHGPYGTRRDRAV 118
>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK- 63
S P+N T + + WFR LR+HDN L + V+ DP G S+ G +K
Sbjct: 114 SDPSNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKT 173
Query: 64 ----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
FL++ + DL NL+ S L V G+P +L +L K + +
Sbjct: 174 GPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEV 233
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ I L ++ +EV TLY LD L
Sbjct: 234 KAEEKIEELMKDEGVEVKYFWGSTLYHLDDL 264
>gi|326384210|ref|ZP_08205892.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
B-59395]
gi|326197075|gb|EGD54267.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
B-59395]
Length = 480
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D PSL + VF+LD S G + FL CLE LD +L
Sbjct: 8 WFRRDLRLSDLPSLSAAADRAESALAVFVLDDALVRPS--GAPRTTFLAGCLEALDADL- 64
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
RL V+ G P ++P+L + ED P+G+ RD+ +
Sbjct: 65 --GGRLLVVSGDPVQVIPELVDVLSVDSVHVSEDFGPYGRARDEAV 108
>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
Length = 457
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK- 63
S P+N T + + WFR LR+HDN L + V+ DP G S+ G +K
Sbjct: 114 SDPSNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKT 173
Query: 64 ----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
FL++ + DL NL+ S L V G+P +L +L K + +
Sbjct: 174 GPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEV 233
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ I L ++ +EV TLY LD L
Sbjct: 234 KAEEKIEELMKDEGVEVKYFWGSTLYHLDDL 264
>gi|6118527|gb|AAF04135.1|AF191033_3 DNA photolyase [Mycobacterium smegmatis]
Length = 431
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 20 WFRKGLRMHDNPSLR--EGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
W R+ LR+ D P+L+ G + C F++DP A SS G + FL L +LD
Sbjct: 2 WLRRDLRLGDLPALQAARGTDDSSVLLC-FVVDPRLARSS--GERRLAFLFDSLRELD-- 56
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
KL+ RL V+RG+P + +P+L + + D PFG+ RD+ + E+ +E
Sbjct: 57 -DKLDGRLLVVRGRPDEEIPRLARAVDAEAVHISADFTPFGRRRDEAVAEALGEVPLEAT 115
Query: 138 A 138
Sbjct: 116 G 116
>gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
43160]
gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
43160]
Length = 454
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 20 WFRKGLRMHDNPSL---REGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
WFR+ LR+ D+P+L RE VF+ DP G S G+ + +FLL CL DL
Sbjct: 7 WFRRDLRLADHPALLDAREAAGPDGAVVPVFVFDPRLWGPS--GLPRRQFLLDCLADLGA 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+++ L + G PA +LP L +E + D P+G+ RD +
Sbjct: 65 ---QVDGALVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRERDAAV 110
>gi|428208935|ref|YP_007093288.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
gi|428010856|gb|AFY89419.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
Length = 477
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNTGLAAARQRTQKVVGVFCLDPNILERDDVAPVRVTYMIGCLQQLQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ S+L +++G+P + +P L + + D EP+ +VRD+ ++ +E I+V
Sbjct: 65 RYAQVGSQLLILQGEPREAIPALATALSAKAVFWNWDVEPYSQVRDRTVIETLKEKGIQV 124
Query: 137 I 137
+
Sbjct: 125 L 125
>gi|28625001|emb|CAD24679.1| photolyase related protein [Aphrocallistes vastus]
Length = 563
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 15 KHMVHWFR-KGLRMHDNPSLREGL-KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
K ++H F + LR+ DN +L + + + F V+I D + S V +W+FL+ CLE
Sbjct: 45 KVLLHIFNNRHLRLKDNTALYQAMAQNPDKFYAVYIFDGF--DSKPVAPVRWQFLIDCLE 102
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
DL L L+ RG+ D+L L + WK L+ DP+ ++ I+ +C
Sbjct: 103 DLKEQLNGFGLELYCFRGETIDVLATLVQAWKVKLLSINMDPDVNFTFFNEKIVKMC 159
>gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
Length = 478
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W RK LR+ DN +L + +ILD + + W FL L++L
Sbjct: 6 ILFWHRKDLRIFDNQALIKAFSLSNAITSTYILDRNYTHDFSANSRAW-FLGDSLQELGN 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N K+ SRL + G P I+P+L K + + + EP+ RD I +E NI+V
Sbjct: 65 NWEKMGSRLVIEEGDPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKEKNIQV 124
Query: 137 IARVSHTLYD 146
I H L +
Sbjct: 125 IESWDHLLVE 134
>gi|406908204|gb|EKD48781.1| hypothetical protein ACD_64C00134G0005 [uncultured bacterium]
Length = 465
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV--GINKWRFLLQCLEDLDINL 78
FR+ LR+ DN L E LK F DP S N N +F+L+ L DL+ +
Sbjct: 13 FRRDLRLPDNKGLAEALKTSERVIACFNFDPRQVASKNAYKSDNALQFMLESLHDLEQQI 72
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+K +L++ G P + + + K L D PF + RD+ I LC + N+
Sbjct: 73 KKQKGKLYLFYGDPLKTISHIILQEKIDALFLNFDYTPFSQKRDKAIEKLCVKKNV 128
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + +F LDP +V + +L+ CL++L
Sbjct: 5 ILFWHRRDLRISDNIGLSTARQRSPHVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
N ++ S+L +++G+P+ +P L + K + + D EP+ + RD+ + +E I
Sbjct: 65 NYQQAGSQLLILKGKPSQAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEKGI 122
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L K VF LDP ++ + +++ L +L
Sbjct: 6 VLFWHRRDLRIRDNLGLAAARKRTPKVVGVFCLDPGILNGDDIAPARVSYMIGSLAELQE 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N + S L +++G+P + +P L + + D EP+ + RD N+ + ++ +IE
Sbjct: 66 NYQSAGSELLILKGKPEEAIPNLASALGAAAVYWNRDVEPYARERDPNVASALKDRDIE- 124
Query: 137 IARVSHTLYDLDQLKPDS 154
S +D L PD+
Sbjct: 125 ---SSTQYWDQLLLPPDA 139
>gi|418529913|ref|ZP_13095840.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni ATCC
11996]
gi|371452969|gb|EHN65994.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni ATCC
11996]
Length = 496
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN +L L+ C CVF+ D + + F+ Q L +LD LR
Sbjct: 11 WLRRDLRLADNAALYHALQQCEKLYCVFVFDDSILAALPRADRRVEFICQSLTELDAALR 70
Query: 80 KLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ R L RG P DI+P L ++ + +D EP RD +
Sbjct: 71 EAAGRAHTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAALARDAQV 120
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K ++ W RK LR+ DN L + + + +F D ++ + +LL CL++L
Sbjct: 3 KLILFWHRKDLRISDNVGLAKARQESSKVVGIFCFDSNILERDDIAPARIAYLLGCLQEL 62
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+KL S L I+G+P+ I+P+L + + D EP+ + RD+ ++ +E I
Sbjct: 63 QQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQGI 122
Query: 135 E 135
+
Sbjct: 123 K 123
>gi|409390588|ref|ZP_11242316.1| deoxyribodipyrimidine photo-lyase, partial [Gordonia rubripertincta
NBRC 101908]
gi|403199437|dbj|GAB85550.1| deoxyribodipyrimidine photo-lyase, partial [Gordonia rubripertincta
NBRC 101908]
Length = 229
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 20 WFRKGLRMHDNPSLR--EGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
W R+ LR+ D P+L G + C F++DP SS G + FL L D+D
Sbjct: 2 WLRRDLRLSDLPALATARGADDSSVLLC-FVVDPRLEKSS--GERRLAFLFDSLRDVDA- 57
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
KL+ +L V+RG+P + +P+L K + D PFG+ RD+ + ++ +E
Sbjct: 58 --KLDGKLLVVRGRPDEEIPRLAKAVNAEAVHISGDFTPFGRHRDEAVAEALGDIPLEA 114
>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
Length = 526
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-- 64
P+N + K + WFR LR+HDN +L K + V+ DP G S+ G +K
Sbjct: 180 PSNAAALRKAAIVWFRNDLRVHDNEALSSANKEALSVLPVYCFDPRDYGKSSSGFDKTGP 239
Query: 65 ---RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
FLL+C+ +L NLR+ S L V G+P ++L +L K L ++
Sbjct: 240 FRATFLLECVANLRANLRERGSDLVVRIGRPEEVLVELAKSIGADALYAHQEVSHEEIAT 299
Query: 122 DQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ I + E +E TLY + L
Sbjct: 300 EEKIKSSLEEEGVETKFFWGSTLYHPEDL 328
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF DP V + ++LL CL++L
Sbjct: 4 VLFWHRRDLRLKDNIGLFQAHQKTAKVLGVFCFDPQLLKKDQVAPARIKYLLGCLQELQE 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N R++ S L ++ P + L + T + + +D EP+ + RD+ + + E I V
Sbjct: 64 NYRRVGSDLLILNADPVTAISNLAQTLNATGVFWNQDIEPYSRKRDRAVQSALEEQGITV 123
>gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
Length = 490
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN +L L+ C CVF+ D + + F+ Q L +LD LR
Sbjct: 5 WLRRDLRLADNAALYHALQQCEKLYCVFVFDDSILATLPHADRRVEFICQSLAELDAALR 64
Query: 80 KLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ R L RG P DI+P L ++ + +D EP RD +
Sbjct: 65 ETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQV 114
>gi|410665733|ref|YP_006918104.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
gi|409028090|gb|AFV00375.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
Length = 433
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 18 VHWFRKGLRMHDNPSL-REGLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLLQCL 71
+HWF LR+ DNP+L R + C++++DP WF ++G + FLLQ L
Sbjct: 6 LHWFINDLRLADNPALCRAAM--ADRLICLYVIDPRWFRPGRQQLPSMGEKRRTFLLQSL 63
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112
DLD LR L +L V+ G P ++P+L + ++ LT E
Sbjct: 64 ADLDRRLRALGQQLLVLEGHPESLIPELVRRYRVNRLTVNE 104
>gi|381186840|ref|ZP_09894408.1| cryptochrome [Flavobacterium frigoris PS1]
gi|379651146|gb|EIA09713.1| cryptochrome [Flavobacterium frigoris PS1]
Length = 429
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQ 69
K + WF+ LR++DN +L + + ++ D ++ G K +FLL+
Sbjct: 2 KTAIVWFKTDLRLYDNETLIKAIAQSEEILPIYCFDDSHFETTQYGFKKTGSYRAQFLLE 61
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN-IMTL 128
L++LD NLRKL S L +++G+P +PK+ E+K + F E F + R + + T
Sbjct: 62 SLKNLDANLRKLGSGLLIVKGKPEVEIPKIVAEYKVHKV-FAEREVAFEEKRTEKLVQTE 120
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
+L E+ + TLY + L
Sbjct: 121 LFKLRCELETFSTSTLYHAEDL 142
>gi|449436489|ref|XP_004136025.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
gi|449498514|ref|XP_004160558.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
Length = 451
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK- 63
S P+N + + WFR LR+ DN L + V+ DP G S+ G +K
Sbjct: 111 SEPSNGAGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSSGFDKT 170
Query: 64 ----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
F+++ + DL NL+ S L V G+P +L +L KE + +
Sbjct: 171 GPFRAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEM 230
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ I + +E N+EV TLY +D L
Sbjct: 231 ETEERIESAMKEENVEVKYFWGSTLYHIDDL 261
>gi|15226633|ref|NP_182281.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
gi|116248577|sp|Q8LB72.2|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
Length = 447
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+HDN L C + V+ DP G S+ G +K +FL++ + +L
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 179
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
NL+ S L V G+P +L +L KE + + + I T +E +
Sbjct: 180 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGV 239
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY LD L
Sbjct: 240 EVKYFWGSTLYHLDDL 255
>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
Length = 440
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGS----SNVGINKWRFLLQCLE 72
++WF + LR+HDN +L K CV+++DP WF +G ++WRFL Q L
Sbjct: 4 LYWFTRDLRLHDNAALLAASK-SDMLLCVYVVDPRWFVPGPFQCRALGAHRWRFLWQSLI 62
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKE 102
L+ +LR L RL + G+P ++P L +
Sbjct: 63 SLERDLRPLGQRLHIAFGKPEQVIPDLVHD 92
>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+HDN L C + V+ DP G S+ G +K +FL++ + +L
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 179
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
NL+ S L V G+P +L +L KE + + + I T +E +
Sbjct: 180 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGV 239
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY LD L
Sbjct: 240 EVKYFWGSTLYHLDDL 255
>gi|331694491|ref|YP_004330730.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
CB1190]
gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
CB1190]
Length = 462
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WFR+ LR+ D P +F+LDP S G + FL CL LD
Sbjct: 6 VVWFRRDLRVRDQPIFLAAADSGPAALALFVLDPALLDPS--GPARRTFLYGCLRALD-- 61
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L RL V+RG PAD++P++ + D P+G RDQ +
Sbjct: 62 -DALGGRLLVVRGDPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAV 108
>gi|119715025|ref|YP_921990.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
gi|119535686|gb|ABL80303.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
Length = 453
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR+ LR+ DNP+L E +F+LDP G + G + +L L LD
Sbjct: 7 AVLWFRRDLRLADNPALVEAAADGPVL-PLFVLDPVLWGPA--GAARRAYLGASLRALDA 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+LR+ +RL V+RG PA ++P+ + + D P+G RD + E+
Sbjct: 64 SLRERGTRLSVVRGDPARLVPRAARAVGAARVHVAADFGPYGSRRDGAVEQALTGAGAEL 123
Query: 137 I 137
+
Sbjct: 124 V 124
>gi|449436487|ref|XP_004136024.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
gi|449498510|ref|XP_004160557.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
Length = 459
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK- 63
S P+N + + WFR LR+ DN L + V+ DP G S+ G +K
Sbjct: 111 SEPSNGAGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSSGFDKT 170
Query: 64 ----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
F+++ + DL NL+ S L V G+P +L +L KE + +
Sbjct: 171 GPFRAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEM 230
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ I + +E N+EV TLY +D L
Sbjct: 231 ETEERIESAMKEENVEVKYFWGSTLYHIDDL 261
>gi|409098424|ref|ZP_11218448.1| deoxyribodipyrimidine photo-lyase [Pedobacter agri PB92]
Length = 134
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN L LK +FI D + F+ Q ++D+
Sbjct: 7 IFWFRRDLRLEDNAGLYHALKSDNPVIPLFIFDKNILDKLPKNDARVTFIYQTIKDIKET 66
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+K S L V G+P I P++ KE++ + D EP+ + RD N+ L E I
Sbjct: 67 LQKKGSDLLVKYGKPEKIWPEILKEYEVKEVFTNHDYEPYARERDDNMAEF---LTSEKI 123
Query: 138 ARVSHTL 144
A HTL
Sbjct: 124 A--FHTL 128
>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK- 63
S P+N T + + WFR LR+HDN L + V+ DP G S+ G +K
Sbjct: 75 SDPSNAAGTRRACIVWFRNDLRVHDNECLNSASNDSMSVLPVYCFDPRDYGKSSSGFDKT 134
Query: 64 ----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
FL++ + DL NL+ S L V G+P +L +L K + +
Sbjct: 135 GPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEV 194
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ I + ++ +EV TLY LD L
Sbjct: 195 KAEDKIEEVMKDEGVEVKYFWGSTLYHLDDL 225
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K ++ W RK LR+ DN L + + + +F D +++ + +L+ CL++L
Sbjct: 3 KLILFWHRKDLRISDNIGLAKARQKSSKVVGIFCFDSNILEQNDIAPVRIAYLIGCLQEL 62
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+KL S L I+G+P+ I+P+L + + D EP+ + RD+ ++ +E I
Sbjct: 63 QQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQGI 122
Query: 135 E 135
+
Sbjct: 123 K 123
>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
Length = 433
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW----FAGSSNVGINKWRFLLQ 69
EK + WFR+ LR++DN +L ++ +FI D S+ +N F+
Sbjct: 2 EKISIFWFRRDLRLYDNTALYYAIQENIPVLPLFIFDSEILDDLKDKSDARVN---FIHD 58
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L +++ L+K+ S + + G+P ++ L KE+ + D EP+ RDQ I +
Sbjct: 59 QLTEINDQLKKIGSGVLIKHGKPEEVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDNIL 118
Query: 130 RELNIEVIARVSHTLYDLDQL 150
++ I H +++ D++
Sbjct: 119 QQKGIGFYDFKDHVIFEKDEI 139
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++HWFR+ LR+ DNPSL + +FILD AG G +L L L++
Sbjct: 6 IIHWFRQDLRLADNPSLVAAAQAGDVLP-LFILDDDNAGDHKTGAAGRSWLHHALNALNM 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+L + +L V+RG P DI+PKL + + + + EP+ RD+ + T NI+V
Sbjct: 65 SL---DGKLCVMRGDPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKTNLTNNNIQV 121
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+HD+P+L L+ VFILD + +FL L LD
Sbjct: 4 ILWWIRRDLRLHDHPALEYALQKGRVI-PVFILDDRLLQKE--ASKRKQFLFSGLRQLDE 60
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+LRK S+L + RG+P L +L +E + ED P+ + RD +I REL + +
Sbjct: 61 DLRKRGSQLIIRRGEPLAELTRLIQETGAEEIVALEDYSPYARRRDSHI---ARELPLHL 117
Query: 137 IARVSHTLYDLD-QLKPDS 154
A T+Y LKPD
Sbjct: 118 FA--GETVYPPSLVLKPDG 134
>gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
Length = 421
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WFR+ LR+ D+P+L E +F+LDP S G + FL +CL+ LD
Sbjct: 6 VVWFRRDLRVEDHPALLEAADRADRALALFVLDPKLLRPS--GKPRTDFLHRCLKSLD-- 61
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L RL V+ G P +++P + +E + D P+G+ RD+ +
Sbjct: 62 -DRLGGRLMVVEGDPVEVVPAVAREIGAETVHVSADTGPYGRRRDEAV 108
>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
DSM 6242]
gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
6242]
Length = 467
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK--WRFLLQCLEDLDINL 78
FR+ +R+ DN +L L FILDP N +FLL+ L DL L
Sbjct: 12 FRRDMRVDDNSALLAALDMSDVVIPCFILDPRLCDPKGKAFNSNALQFLLESLYDLKGQL 71
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
K+N RL++ G P ++ +L + + + D PF RD I ++C + ++++
Sbjct: 72 EKVNGRLYLFSGLPEGVIGQLLENLEIDAVFVNHDYTPFSIKRDMQIASICTDKGVDML 130
>gi|338210905|ref|YP_004654954.1| deoxyribodipyrimidine photo-lyase [Runella slithyformis DSM 19594]
gi|336304720|gb|AEI47822.1| Deoxyribodipyrimidine photo-lyase [Runella slithyformis DSM 19594]
Length = 436
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
WFR+ LR+HDN L LK VFI D + + F+ + + +L L
Sbjct: 9 WFRRDLRLHDNAGLYHALKSGNPVLPVFIFDTEILDKLEDKKDRRVEFIHEAIRELHTQL 68
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
+L S L V G+PADI +L +E+ + D EP+ VRD+ I LN A
Sbjct: 69 TQLGSTLIVRYGKPADIWQQLSEEYDIAEVHTNHDYEPYALVRDKAIGAF---LNAGGTA 125
Query: 139 RVSH 142
+H
Sbjct: 126 FYTH 129
>gi|441207175|ref|ZP_20973415.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis MKD8]
gi|440628072|gb|ELQ89874.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis MKD8]
Length = 452
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR D+P++ + +G ++LDP GSS G + +L + L DL
Sbjct: 6 WFRRDLRCADHPAVLDAAQGDADVLACYVLDPRLTGSS--GDRRLAYLYEALRDL---RE 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+L +L V RG+P +P+L + D PFG RD+ + +L +V
Sbjct: 61 QLGGKLLVTRGRPEQRIPELAAAIGAASVHVSGDFSPFGLRRDEAVRAALADLPGDVGLY 120
Query: 140 VSHTLY 145
+ + Y
Sbjct: 121 ATGSPY 126
>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
ATCC 33406]
gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cytophaga hutchinsonii ATCC 33406]
Length = 434
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-------PWFAGSSNVGINKWRFL 67
K + WF+ LR+HDN +L ++ V+ LD P+ G G + +FL
Sbjct: 2 KRSIVWFKTDLRLHDNETLVRAIEQSDEIIPVYCLDEDHFKITPF--GFQKTGNFRAQFL 59
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT 105
L+ L DLD NLRKL S L V+RG+P L K+ K+++
Sbjct: 60 LESLNDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEA 97
>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
Length = 499
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR-------------- 65
WFR+ LR DN +L LK C CVF+ D I+KW+
Sbjct: 17 WFRRDLRHTDNAALYYALKHCERVWCVFVFDTTILQPL---IDKWQSRHPGTQAQDRRVE 73
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
F+L L +LD LR L V+ G P D++PKL E + + D EP RD+ +
Sbjct: 74 FILASLHELDEALRARGGGLVVLYGDPVDLVPKLAAELEVDAVFANHDYEPAAIERDEAV 133
>gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
Length = 499
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN L + VF+ DP + ++ + FL + L +L R
Sbjct: 9 WHRRDLRLADNLGLAAAARATAAVTGVFVFDPALLDAPDLSPARLWFLSESLRELQGRWR 68
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+ SRL ++RG PA++LP+L + + + D EP G+ RD+ + R +++A
Sbjct: 69 EAGSRLLLLRGDPAEVLPQLAQAAGAQVVAWNRDVEPDGRARDRRVAEALRAGGCKLLA- 127
Query: 140 VSHTLYDLDQL--KPDS 154
D DQL PD+
Sbjct: 128 ------DWDQLLVPPDA 138
>gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
Length = 434
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
EK + WFR+ LR+ DN L LKG +FI D + +L L
Sbjct: 2 EKVTLFWFRRDLRIQDNCGLYHALKGENRVIPIFIFDKEILKKLPKQDARVEMILLALGA 61
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
+DI +++ + G P I KL K+W + ED EP+ RD I TL
Sbjct: 62 IDIAMKRNRCNVGKYHGTPKAIFSKLIKQWNIEKVICNEDYEPYASERDSEIKTLLEAAG 121
Query: 134 IEVIARVSHTLYDLDQL 150
I+ +++ +++
Sbjct: 122 IQFECYKDQVIFEKEEV 138
>gi|407710068|ref|YP_006793932.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
gi|407238751|gb|AFT88949.1| deoxyribodipyrimidine photo-lyase [Burkholderia phenoliruptrix
BR3459a]
Length = 499
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR-------------- 65
WFR+ LR DN +L LK C CVF+ D +++W+
Sbjct: 17 WFRRDLRTTDNAALYYALKHCERVWCVFVFDTTILQPL---VDRWQTRHPGTQAQDRRVE 73
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
F+L L +LD LR L V+ G PAD++PKL + + + D EP RD+ +
Sbjct: 74 FILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHDYEPAAIERDEAV 133
>gi|388494660|gb|AFK35396.1| unknown [Medicago truncatula]
Length = 456
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 12/161 (7%)
Query: 2 SPLS----TPTNPNSTE---KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA 54
SPLS P +P+S + + WFR LR+HDN +L + V+ DP
Sbjct: 98 SPLSLIPHRPNDPSSAAALRRTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADY 157
Query: 55 GSSNVGINK-----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109
G S+ G +K FL++ + DL NL+ S L V G+P +L +L KE +
Sbjct: 158 GKSSSGFDKTGPYRASFLIESISDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVY 217
Query: 110 FEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ ++ I +E N+EV TLY ++ L
Sbjct: 218 CHREVSHDEVKMEEKIEGKMKEENVEVKYFWGSTLYHVEDL 258
>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
Length = 448
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+HDN L C + V+ DP G S+ G +K +FL++ + +L
Sbjct: 121 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 180
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
NL+ S L V G+P +L +L KE + + + I + +E +
Sbjct: 181 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIESAMKEEGV 240
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY LD L
Sbjct: 241 EVKYFWGSTLYHLDDL 256
>gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
Length = 431
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
W R+ LR+ DN L L+ VFI D G + + ++ Q L D++I+L
Sbjct: 9 WLRRDLRLEDNIGLHHALQSDAPVMPVFIFDTDILGKLEDKEDRRVDYIHQALTDINISL 68
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
+K +S+L G+P +I KL +E+ + D EP RD+ I E I A
Sbjct: 69 KKYHSKLNTYYGKPIEIFRKLSEEYDIESVFCNRDYEPQAIERDKEIYYFFTEKKIPFKA 128
Query: 139 RVSHTLYDLDQL 150
++D DQ+
Sbjct: 129 CKDQVIFDKDQI 140
>gi|225437398|ref|XP_002270248.1| PREDICTED: blue-light photoreceptor PHR2 [Vitis vinifera]
Length = 454
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK- 63
S P+N + + WFR LR+HDN L + V+ DP G S+ G +K
Sbjct: 108 SDPSNAAGIRRSCIVWFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSSGFDKT 167
Query: 64 ----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
FL++ + DL NL+K S L V G+P +L +L K + +
Sbjct: 168 GPYRASFLIESVSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEV 227
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ I +E +E+ TLY +D L
Sbjct: 228 KGEEKIEAAMKEEGVELKYFWGSTLYHVDDL 258
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA------GSSNVGINKWRFLLQC 70
++ W R+ LR+ D+ +L E K +FILD + VG F+L+
Sbjct: 4 IIVWHRRDLRIFDHSALAEAAKFADEIIPIFILDDDILLRREDFSPACVG-----FMLES 58
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
LE L ++ + +L V RGQ ++L L E + + F ED EPF K+RDQ + +
Sbjct: 59 LEALALSYANIGGKLIVRRGQVLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAVQSEFE 118
Query: 131 ELNIEVIA 138
+L + V A
Sbjct: 119 KLGVRVKA 126
>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
Length = 345
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK--- 63
P + + WFR LR+HDN +L K + V+ DP G S G +K
Sbjct: 12 PAAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSASGFDKTGP 71
Query: 64 --WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
+FL++C+ +L NLR+ S L V G P ++L + K L ++
Sbjct: 72 YRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELGM 131
Query: 122 DQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ + + ++ N++V TL+ +D L
Sbjct: 132 EDKVTSALKDQNVDVKFFWGSTLFHVDDL 160
>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
Length = 345
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK--- 63
P + + WFR LR+HDN +L K + V+ DP G S G +K
Sbjct: 12 PAAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSASGFDKTGP 71
Query: 64 --WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
+FL++C+ +L NLR+ S L V G P ++L + K L ++
Sbjct: 72 YRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELGM 131
Query: 122 DQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ + + ++ N++V TL+ +D L
Sbjct: 132 EDKVTSALKDQNVDVKFFWGSTLFHVDDL 160
>gi|357442473|ref|XP_003591514.1| DNA photolyase protein [Medicago truncatula]
gi|355480562|gb|AES61765.1| DNA photolyase protein [Medicago truncatula]
Length = 456
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 12/161 (7%)
Query: 2 SPLS----TPTNPNSTE---KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA 54
SPLS P +P+S + + WFR LR+HDN +L + V+ DP
Sbjct: 98 SPLSLIPHRPNDPSSAAALRRTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADY 157
Query: 55 GSSNVGINK-----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109
G S+ G +K FL++ + DL NL+ S L V G+P +L +L KE +
Sbjct: 158 GKSSSGFDKTGPYRASFLIESVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVY 217
Query: 110 FEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ ++ I +E N+EV TLY ++ L
Sbjct: 218 CHREVSHDEVKMEEKIEGKMKEENVEVKYFWGSTLYHVEDL 258
>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
CCGE1001]
Length = 499
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR-------------- 65
WFR+ LR DN +L LK C CVF+ D +++W+
Sbjct: 17 WFRRDLRTTDNAALYYALKHCERVWCVFVFDTTILQPL---VDRWQTRHPGTQAQDRRVE 73
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
F+L L +LD LR L V+ G PAD++PKL + + + D EP RD+ +
Sbjct: 74 FILGSLRELDEALRAQGGGLVVLYGDPADLVPKLADQLQVDAVFINHDYEPAAIERDEAV 133
>gi|418052977|ref|ZP_12691054.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium rhodesiae JS60]
gi|353179765|gb|EHB45322.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium rhodesiae JS60]
Length = 468
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 8 TNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFL 67
T P S ++ WFR+ LR+HD P+L E F+LDP SS G + +FL
Sbjct: 2 TRPASQPSTLL-WFRRDLRLHDLPALLEATADGAEVLGCFVLDPRLEKSS--GPRRLQFL 58
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L +L L RL + RG+P +P L KE + D PFG RDQ +
Sbjct: 59 GDSLRELS---EALGGRLLITRGRPEQRIPLLCKEIGACAVHISSDFSPFGVRRDQAVAA 115
Query: 128 LCRELNIEVIARVSHTLYDLDQLKPD 153
+ E+ A S L ++ D
Sbjct: 116 ALADAGAELRATGSPYLVSPGRVTKD 141
>gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a]
gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Frankia alni ACN14a]
Length = 451
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V W R+ LR+ D+P+L + G +F+LD A G + FL +CL +LD
Sbjct: 5 VCWLRRDLRLSDSPALCAAVDGADDVLVLFVLDD--ALRRPAGPVRLAFLYRCLRELD-- 60
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+L RL V RG P D++P++ + + D P+G+ RD + R E++
Sbjct: 61 -DRLGGRLCVRRGDPVDVVPEVARAVDARRVHISADYGPYGRRRDGEVEQALRAGGRELV 119
>gi|383827438|ref|ZP_09982538.1| deoxyribodipyrimidine photo-lyase [Mycobacterium xenopi RIVM700367]
gi|383330482|gb|EID09004.1| deoxyribodipyrimidine photo-lyase [Mycobacterium xenopi RIVM700367]
Length = 456
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F + LR+HDNP L +G VF+LD S V NK FL+ L DLD LR+
Sbjct: 8 FTRDLRVHDNPVLTAAHRGGDAVVPVFVLDEAILSSDYVTPNKAAFLVDALTDLDDELRR 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
RL V RGQ D + ++ E T + D + +
Sbjct: 68 RGGRLIVRRGQFVDEVLRVVDELSITDVHIAADVSAYSQ 106
>gi|187921432|ref|YP_001890464.1| deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
Length = 499
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILD---------PWFAGSSNVGINKWR--FLL 68
WFR+ LR DN +L LK C CVF+ D W A + R +L
Sbjct: 17 WFRRDLRSTDNAALYYALKHCERVWCVFVFDTTILQPLVEAWQARHPDTQPQDRRIELIL 76
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
L +LD LR L V+ G PAD++PKL E + D EP RD+ +
Sbjct: 77 GALGELDEALRANGGGLIVLYGDPADLVPKLADELGVDAVFANHDYEPVAIARDETVRET 136
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
E + + +++ D++
Sbjct: 137 LAEAGRQWLTFKDQVIFERDEV 158
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +++ + +++L CL +L
Sbjct: 5 ILFWHRRDLRITDNIGLATAFEKSRKLVGVFCLDPNILKGADIAPARVKYMLGCLAELQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N K+ S+LF++ +P + +L + + + D EP+ + RDQ + + +E I V
Sbjct: 65 NYAKIGSQLFILFDEPRQAIAQLATALQAQFVYWNLDIEPYSQDRDQAVRSALKEQGIAV 124
>gi|374598111|ref|ZP_09671113.1| DNA photolyase FAD-binding [Myroides odoratus DSM 2801]
gi|423323552|ref|ZP_17301394.1| hypothetical protein HMPREF9716_00751 [Myroides odoratimimus CIP
103059]
gi|373909581|gb|EHQ41430.1| DNA photolyase FAD-binding [Myroides odoratus DSM 2801]
gi|404609317|gb|EKB08700.1| hypothetical protein HMPREF9716_00751 [Myroides odoratimimus CIP
103059]
Length = 434
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP----WFAGSSNVGINKWRFLLQ 69
E+ ++ WFR+ +R+HDN L ++ +FI DP F + I ++ Q
Sbjct: 2 EEIVIFWFRRDIRLHDNVGLYHAIQSGKKVLPIFIFDPAILAQFPAQEDRRIP---YIYQ 58
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L +D +L++LNS++ D+ +L + + D EP + RD + L
Sbjct: 59 ALAQVDSHLQQLNSQVVCYHDHVLDVFKQLIETHAIAAVYTNADYEPAARKRDAAVQALV 118
Query: 130 RELNIEVIARVSHTLYDLDQL 150
E I A +++ ++L
Sbjct: 119 AEHAIAFYAYKDQVIFEANEL 139
>gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
Length = 434
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 66/137 (48%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
E+ + W R+ LR+ DN L + LK + +FI D + + F+ Q +++
Sbjct: 2 EQLALFWHRRDLRISDNAGLYKALKSGLKVQAIFIFDSQILAHLSKNDQRVLFIHQTIQN 61
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L +KL + L++ G P +I+P+L ++ + + D EP RD+++ ++
Sbjct: 62 LQQAYQKLGASLWIFHGNPTEIIPQLVQKHEIKHVFCNRDYEPNALKRDKSVYDALTKIG 121
Query: 134 IEVIARVSHTLYDLDQL 150
+ H +++ +++
Sbjct: 122 CQFSGSKDHVIFEKEEI 138
>gi|302838410|ref|XP_002950763.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
gi|300263880|gb|EFJ48078.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
Length = 97
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-----SNVGINKWR 65
+ K V WFR LR+HDNP L + T+ V++LDP G G + +
Sbjct: 1 GAARKPAVMWFRNDLRLHDNPVLDRACREGTSVLPVYVLDPRDYGKGPNGFGRTGPTRAQ 60
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
F++ ++DL LR S L V G P +++P+L +
Sbjct: 61 FIMDAVQDLRSRLRAAGSDLIVRMGHPEEVVPELAR 96
>gi|399029602|ref|ZP_10730423.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
gi|398072566|gb|EJL63778.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
Length = 431
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
+ +K WF++ LR+ DN L L+ +FI D + F+ L
Sbjct: 2 TKQKITFFWFKRDLRLDDNIGLFHALQSNFPVIPLFIFDEDILDHLPKNDARVSFIYDSL 61
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
E ++ L ++S + + +G+ A++ L E+ + F +D EP+ RDQ I L ++
Sbjct: 62 EKINEQLSAIDSSILIKKGKTAEVWKSLLTEFDIQKVFFNKDYEPYAIKRDQEIDALLQQ 121
Query: 132 LNIEVIARVSHTLYD 146
NIE ++ H +++
Sbjct: 122 NNIESLSYKDHVIFE 136
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA----GSSNVGINKWRFLLQCL 71
++ W+R LR+HD+ L + LK ++ LDP F+ G G+ + +FLL+ +
Sbjct: 6 IILWYRNDLRIHDHEPLYKALKVNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKFLLESI 65
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
DL NL+KL S L + + +P ++P+L ++ + F ++ ++ + ++
Sbjct: 66 ADLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVHQALKQ 125
Query: 132 LNIEVIARVSHTLYDLDQL 150
+ + + + HTLY D L
Sbjct: 126 IGVRLKSFWGHTLYHPDDL 144
>gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
Length = 435
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK--- 63
P++ + + WFR LR+HDN +L + + V+ DP G+S++GI+K
Sbjct: 46 PSSAAGLRRASIVWFRNDLRLHDNEALVSASRDSLSILPVYCFDPRDYGNSSLGIDKNGP 105
Query: 64 --WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
+FL +C+ +L +LR+ S L V G+P ++L L K L + +G+++
Sbjct: 106 YRVKFLFECVANLRSSLRERGSDLIVRIGKPEEVLLDLAKSVGAESL-YAHQEVAYGELQ 164
Query: 122 DQNIMTL 128
+ + + +
Sbjct: 165 EGDFVAI 171
>gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291]
Length = 442
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFL---LQCLEDLDI 76
WFR+ LR+HD+P+L C F+LDP SS G + +FL L+ L D
Sbjct: 6 WFRRDLRLHDHPALSAAADSDEVLAC-FVLDPRLQRSS--GPRRLQFLGDSLRVLRD--- 59
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L+ RL V RG+P +P++ K + + ED PFGK RD +
Sbjct: 60 ---ELDGRLLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARV 105
>gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
ATCC 25486]
gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 457
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HD+P LR L+ +F+LDP + N+ FL CL DLD +LR+
Sbjct: 8 FTSDLRLHDHPPLRAALRAADEVVPLFVLDPGIGAAGFEAPNRCAFLADCLADLDASLRE 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
RL V G A + + E + + + R++ + T+ RE
Sbjct: 68 RGGRLVVRSGPVAQQVGAIAAECGAGEVHMAAGVTRYARRREELLRTVLRE 118
>gi|414581574|ref|ZP_11438714.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-1215]
gi|420879395|ref|ZP_15342762.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0304]
gi|420885292|ref|ZP_15348652.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0421]
gi|420891279|ref|ZP_15354626.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0422]
gi|420894884|ref|ZP_15358223.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0708]
gi|420901394|ref|ZP_15364725.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0817]
gi|420908484|ref|ZP_15371802.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-1212]
gi|420974320|ref|ZP_15437511.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0921]
gi|392078539|gb|EIU04366.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0422]
gi|392081055|gb|EIU06881.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0421]
gi|392084304|gb|EIU10129.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0304]
gi|392094196|gb|EIU19991.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0708]
gi|392098755|gb|EIU24549.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0817]
gi|392106388|gb|EIU32174.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-1212]
gi|392116726|gb|EIU42494.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-1215]
gi|392162203|gb|EIU87893.1| deoxyribodipyrimidine photolyase [Mycobacterium abscessus 5S-0921]
Length = 455
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DNP+LR + VFILDP GS+ + W L + DLD
Sbjct: 3 VIWWARRDLRLADNPALRAAAESGDVL-AVFILDPQLLGSAPRPRDAW--LAANVLDLD- 58
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R+L+ RL + G P +L +L + T + + PFG+ RD ++ ++ ++
Sbjct: 59 --RQLDGRLCLKSGAPEQVLVELAQRVGATGVHVARETTPFGRRRDTSVSAELAKIGVDW 116
Query: 137 I 137
I
Sbjct: 117 I 117
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 68/134 (50%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
+++ ++ WFR+ LR+ DNP+LR ++ V+ILD G+ +G +L L
Sbjct: 18 SDRPLLLWFRQDLRLADNPALRAAVESGQPILPVYILDDETPGAWAIGGAARWWLHHSLT 77
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L +L+ L + L + RG +++ L +E T + + EPF + RD+ I ++
Sbjct: 78 ALSHDLKALGAPLILRRGDSREVIDSLVREAGATAVYWNRCYEPFARKRDEAIKATLKQD 137
Query: 133 NIEVIARVSHTLYD 146
IE + S L++
Sbjct: 138 GIEARSFNSALLHE 151
>gi|365872249|ref|ZP_09411788.1| deoxyribodipyrimidine photo-lyase [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|421051357|ref|ZP_15514351.1| deoxyribodipyrimidine photo-lyase [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363994589|gb|EHM15810.1| deoxyribodipyrimidine photo-lyase [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392239960|gb|EIV65453.1| deoxyribodipyrimidine photo-lyase [Mycobacterium massiliense CCUG
48898]
Length = 455
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DNP+LR + VFILDP GS+ + W L + DLD
Sbjct: 3 VIWWARRDLRLADNPALRAAAESGDVL-AVFILDPQLLGSAPRPRDAW--LAANVLDLD- 58
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R+L+ RL + G P +L +L + T + + PFG+ RD ++ ++ ++
Sbjct: 59 --RQLDGRLCLKSGAPEQVLVELAQRVGATGVHVARETTPFGRRRDTSVSAELAKIGVDW 116
Query: 137 I 137
I
Sbjct: 117 I 117
>gi|452822894|gb|EME29909.1| photolyase/blue-light receptor [Galdieria sulphuraria]
Length = 444
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 29/170 (17%)
Query: 2 SPLSTPTNPNSTEK--------HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF 53
+PL +P N E ++ WFR LR+HDNP+L + + V+ DP
Sbjct: 94 APLFSPLGENFGESAGQAYKGSKIIVWFRNDLRLHDNPALFRAAEEGSLILPVYCFDPRQ 153
Query: 54 AGSSNVGINK-----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTC- 107
G ++ G K +FL+ +EDL + R S L V G+P ++LP+L ++ T C
Sbjct: 154 FGKTSFGFEKTGRYRAQFLIDSVEDLRKSFRAKGSDLIVRLGRPEEVLPELCRQ--TGCK 211
Query: 108 -------LTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+T+E+ + ++++ + +E+ S+TLY + L
Sbjct: 212 RVFCHREVTYED------LIVEEDVGDALESIGVEMTLLWSNTLYQAEDL 255
>gi|384246200|gb|EIE19691.1| DNA photolyase [Coccomyxa subellipsoidea C-169]
Length = 407
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN-----KWR 65
+ V WFR LR+HDN +L + ++ V+ DP SS GIN + +
Sbjct: 80 GGARRAAVMWFRNDLRVHDNEALAIANRDSSSLLPVYCFDPREYSSSGNGINSTGPYRAQ 139
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKE---WKTTC---LTFEEDPEPFGK 119
F++ + +L +LR + S L V G+P ++L L K+ K C +T+EED
Sbjct: 140 FIVDAVMELRNSLRAIGSDLIVRIGKPEEVLTDLAKKVGASKVFCHSEVTYEED------ 193
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ ++ + + +I++ A TLY D L
Sbjct: 194 LTEKQVAAALKVEDIQLKASWGSTLYSPDDL 224
>gi|118472574|ref|YP_886913.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
155]
gi|399986929|ref|YP_006567278.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
155]
gi|118173861|gb|ABK74757.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
155]
gi|399231490|gb|AFP38983.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
155]
Length = 452
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR D+P++ + +G ++LDP GSS G + +L L DL
Sbjct: 6 WFRRDLRCADHPAVLDAAQGDADVLACYVLDPRLTGSS--GDRRLAYLYGALRDL---RE 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+L +L V RG+P +P+L + D PFG RD+ + +L +V
Sbjct: 61 QLGGKLLVTRGRPEQRIPELAAAIGAASVHVSGDFSPFGLRRDEAVRAALADLPGDVGLY 120
Query: 140 VSHTLY 145
+ + Y
Sbjct: 121 ATGSPY 126
>gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104]
gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104]
Length = 442
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFL---LQCLEDLDI 76
WFR+ LR+HD+P+L C F+LDP SS G + +FL L+ L D
Sbjct: 6 WFRRDLRLHDHPALSAAADSDEVLAC-FVLDPRLQRSS--GPRRLQFLGDSLRVLRD--- 59
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L+ RL V RG+P +P++ K + + ED PFGK RD +
Sbjct: 60 ---ELDGRLLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARV 105
>gi|357466479|ref|XP_003603524.1| Cryptochrome DASH [Medicago truncatula]
gi|355492572|gb|AES73775.1| Cryptochrome DASH [Medicago truncatula]
Length = 323
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCLED 73
WFR LR+ DN +L + T V+ +DP + G G + +FLL+CL+D
Sbjct: 101 WFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHFGFPKTGALRTQFLLECLDD 160
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L NL K L + G+P DILP L K + + +++ T ELN
Sbjct: 161 LRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKE-------------TCSEELN 207
Query: 134 IE 135
+E
Sbjct: 208 VE 209
>gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
gi|417749286|ref|ZP_12397690.1| deoxyribodipyrimidine photolyase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440778546|ref|ZP_20957303.1| deoxyribodipyrimidine photo-lyase [Mycobacterium avium subsp.
paratuberculosis S5]
gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459275|gb|EGO38220.1| deoxyribodipyrimidine photolyase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436721022|gb|ELP45201.1| deoxyribodipyrimidine photo-lyase [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 442
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFL---LQCLEDLDI 76
WFR+ LR+HD+P+L C F+LDP SS G + +FL L+ L D
Sbjct: 6 WFRRDLRLHDHPALSAAADSDEVLAC-FVLDPRLQRSS--GPRRLQFLGDSLRVLRD--- 59
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L+ RL V RG+P +P++ K + + ED PFGK RD +
Sbjct: 60 ---ELDGRLLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARV 105
>gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
Length = 428
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN L L T +FI D + + F+ + L +
Sbjct: 3 IFWFRRDLRLDDNVGLFHALNSDQTILPIFIFDYNILSQLSKDDARVTFIHELLSKMQKK 62
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L++ L V G+P++I KL E K + D EP+ + RD+ + L NI+ +
Sbjct: 63 LQEKGKSLAVFYGKPSEIFEKLISENKVKTIYTNHDYEPYARKRDKELNQLFANHNIQFL 122
Query: 138 ARVSHTLYDLDQLKPD 153
+++ ++ D
Sbjct: 123 TSKDQVIFEKSEVTKD 138
>gi|357417378|ref|YP_004930398.1| deoxyribodipyrimidine photo-lyase [Pseudoxanthomonas spadix BD-a59]
gi|355334956|gb|AER56357.1| Deoxyribodipyrimidine photo-lyase [Pseudoxanthomonas spadix BD-a59]
Length = 471
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQCLEDL 74
WFR LR+ DNP+L L+ V+I P W G+++ N WR + L+ L
Sbjct: 7 WFRSDLRLADNPALHAALEAGFDPVPVYIHAPHEEGRWAPGAAS---NAWRH--RSLKAL 61
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D+ LR+ SRL V RG A +L +L ++ + L + EP + RD I ++ ++
Sbjct: 62 DLALRQRGSRLLVRRGDSAMVLQQLIEQSRAQALFWNRKYEPATQPRDAAIKQALKQRHV 121
Query: 135 EV 136
+V
Sbjct: 122 QV 123
>gi|254525755|ref|ZP_05137807.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9202]
gi|221537179|gb|EEE39632.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9202]
Length = 478
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W RK LR+ DN +L + + +I D ++ N W FL L++L
Sbjct: 6 ILFWHRKDLRIFDNQALNKAISLSNAITSTYIFDENYSHDFNANSRAW-FLGNSLQELGN 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
N ++ SRL + +G P I+PKL K + + + EP+ RD I +E NI+
Sbjct: 65 NWHRMGSRLVIEKGDPILIIPKLAKIIDAKFVFWNKSIEPYEINRDSKIKKKLKEKNIQF 124
Query: 137 IARVSHTLYD 146
I H L +
Sbjct: 125 IESWDHLLVE 134
>gi|398803290|ref|ZP_10562396.1| deoxyribodipyrimidine photolyase [Polaromonas sp. CF318]
gi|398097169|gb|EJL87481.1| deoxyribodipyrimidine photolyase [Polaromonas sp. CF318]
Length = 506
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR DN +L LK C CVF+ D + + F+ + LD L+
Sbjct: 27 WFRRDLRAQDNAALHHALKACKQVFCVFVFDRDILDALPRADRRVEFIHGSVLSLDGQLQ 86
Query: 80 KL-------NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+L ++ L V+ G A+ +P+L EW + D EP RD +
Sbjct: 87 RLGAAHGNPDAGLIVVHGHAAEAVPRLAAEWAVDAVFANHDDEPQSLARDAAVQAALESR 146
Query: 133 NIEVIARVSHTLYDLDQL 150
+ + H +++ ++
Sbjct: 147 GVAFHSFKDHVIFERQEV 164
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSS----NVGINKWRFLL 68
E+ ++ W+R LR+HD+ L + L+ C D F +S G + +FLL
Sbjct: 3 EQRILLWYRNDLRLHDHEPLHQALQTKAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLL 62
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
+ + DL N+R S L V RG P +++P L KE T + F ++ + +
Sbjct: 63 ESVADLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQEVTSEEVAVESALKNA 122
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
E+ I V TLY D L
Sbjct: 123 LSEIGITVQTFWGSTLYHPDDL 144
>gi|453382894|dbj|GAC82556.1| deoxyribodipyrimidine photo-lyase [Gordonia paraffinivorans NBRC
108238]
Length = 431
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 20 WFRKGLRMHDNPSLR--EGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
W R+ LR+ D P+L+ G + C F++DP SS G + FL L +LD
Sbjct: 2 WLRRDLRLGDLPALQAARGTDDSSVLLC-FVVDPRLERSS--GERRPAFLFDSLRELD-- 56
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
KL+ RL V+RG+P + +P+L + + D PFG+ RD+ + E+ +E
Sbjct: 57 -DKLDGRLLVVRGRPDEEIPRLARAVDAEAVHISADFTPFGRRRDEAVAEALGEVPLEAT 115
Query: 138 A 138
Sbjct: 116 G 116
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRC-VFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
++HWFR+ LR+ DNP+L V+ILDP + FL+ L LD
Sbjct: 2 IIHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRALD 61
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+ RL V G+P L L E + +T+ D P+ + RDQ I
Sbjct: 62 AQLQHHGLRLIVRHGEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAI 111
>gi|119389332|pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
gi|119389333|pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
gi|119389334|pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
gi|119389335|pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQCLEDLDINLR 79
FR+ LR+ DN L L C VFI DP + F++ L +LD LR
Sbjct: 7 FRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELR 66
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
K SRL V G+ ++ + F K + ED PF RD+ I +C E IE A
Sbjct: 67 KKGSRLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAY 124
Query: 140 VSHTL 144
+ L
Sbjct: 125 EDYLL 129
>gi|428774053|ref|YP_007165841.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
gi|428688332|gb|AFZ48192.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
Length = 476
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W RK LR+ DN L E + F LDP ++ + ++L CLE+L
Sbjct: 5 ILFWHRKDLRITDNLGLHEAYQNSKKIIGFFCLDPDILSRDDIAPARVTYMLGCLEELRK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
++ V + P +I+ KL K + + +D EP+ + RD+ + +E NI
Sbjct: 65 KYQERGGTFLVFKDSPQNIILKLAHNLKANSIYWNKDVEPYSRNRDRELAKTLKEKNI 122
>gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 550
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 18 VHWFRKGLRMHDN-PSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR+ LR+ D+ P R +G VF+ D G + RF+L CL LD
Sbjct: 5 VVWFRRDLRIADHEPLYRAARRGLIV--PVFVFDRALLKHPETGSGRVRFMLSCLAALDE 62
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP-FGKVRDQNI-MTLCRE 131
+LR RL + G P ++LPKL +E ++ + D E +G+VRD + L RE
Sbjct: 63 DLRSRGGRLILRSGDPVEVLPKLVRETQSDGIYSYIDYERIYGRVRDARLNQALTRE 119
>gi|411119570|ref|ZP_11391950.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
gi|410711433|gb|EKQ68940.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
Length = 496
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINK-----WRF 66
T+ ++ W+R LR+ D+ L + L+ + V+ +DP G ++ G K +F
Sbjct: 2 TQSSILIWYRNDLRVADHEPLYQALRINASHILPVYCIDPRQFGQTSFGFPKTGAFRAQF 61
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
LL+ L DL +L++L S L + RG P ++P+L +++ + + + ++ + + +
Sbjct: 62 LLESLADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYHKEVTSEEVIVEDALE 121
Query: 127 TLCRELNIEVIARVSHTLYDLDQLKPD 153
+ + +E+ + HTLY +L D
Sbjct: 122 RALKPMGVELRSFWGHTLYHPAELPFD 148
>gi|15921125|ref|NP_376794.1| deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7]
gi|342306319|dbj|BAK54408.1| DNA photolyase [Sulfolobus tokodaii str. 7]
Length = 432
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQCLEDLDINLR 79
FR+ LR+ DN L L C VFI DP + F++ L +LD LR
Sbjct: 7 FRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELR 66
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
K SRL V G+ ++ + F K + ED PF RD+ I +C E IE A
Sbjct: 67 KKGSRLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAY 124
Query: 140 VSHTL 144
+ L
Sbjct: 125 EDYLL 129
>gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
Length = 493
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ D+ +L L+ C CVFI D + F+ Q L LD LR
Sbjct: 11 WLRRDLRLADHAALYHALRQCRQVHCVFIFDDDILAPLPCADRRVEFICQSLSGLDDALR 70
Query: 80 KLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ + R L V RGQPA+ +P L ++ + D EP RD +
Sbjct: 71 QASGRADTGLIVRRGQPAEQIPDLARQLGAQAVFCNWDDEPDALARDTRV 120
>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
gi|81834455|sp|Q7NMD1.1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
Length = 500
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFL 67
+ K ++ W+R LR+HD+ L L ++ DP G + G K RFL
Sbjct: 2 STKTVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ + DL +LR+L S L V RG P +++P L E + + + + V ++++
Sbjct: 62 LESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQA 121
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
LN+ V + TL D L
Sbjct: 122 ALAPLNVPVRSFWGTTLVHPDDL 144
>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 425
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-----AGSSNVGINKWRFLLQCLEDL 74
WFR LR HDN L E + V+ DP + +G G+++ RF+L + +L
Sbjct: 9 WFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFILDAVREL 68
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+ L G P +I+P+L +++ + + + +N+ T +L I
Sbjct: 69 KEKFAAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETALWKLKI 128
Query: 135 EVIARVSHTLYDLDQL 150
+ + HTLY + L
Sbjct: 129 NLKHFIGHTLYHKEDL 144
>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
Length = 476
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 62/118 (52%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + +F LDP +V + +L+ CL++L
Sbjct: 5 ILFWHRRDLRISDNIGLSAARQKSPKIVGIFCLDPNILNKDDVAPARVTYLIGCLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
++ S+L ++RG+P+ +P+L K + + + D EP+ K RD+ ++ + +E I
Sbjct: 65 QYQQAGSQLLILRGEPSQAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQEKGI 122
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFLLQCLEDL 74
WFR LR+HD+ L+ LK T V+ DP G + G K +FLL+ + DL
Sbjct: 9 WFRNDLRLHDHEPLQRALKQKTAIAPVYCFDPRHFGKTPYGFPKTGAFRAQFLLESVADL 68
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
+L+K S L V G+P +++P + ++ T + F E+
Sbjct: 69 RASLQKRGSDLIVRVGKPEEVVPAIARDLGATAVYFHEE 107
>gi|326799096|ref|YP_004316915.1| DASH family cryptochrome [Sphingobacterium sp. 21]
gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
Length = 434
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA----GSSNVGINKWRFLLQCLEDL 74
WFR LR+ DN L + L V++ DP F G G+ + +F+L+ ++DL
Sbjct: 9 WFRNDLRVRDNEILWQALAKADRVVPVYVFDPRQFTPLKNGMHKTGVIRAKFILESVQDL 68
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE--- 131
++LR L + L V+ G P +ILP L + ++ + + + +I TL E
Sbjct: 69 RLSLRSLGADLLVVSGYPEEILPTLAERYQVKEVYHHREVAK----EETHISTLVEEALW 124
Query: 132 ---LNIEVIARVSHTLYDLDQL 150
LN+ + HTLY + L
Sbjct: 125 KKRLNLRHF--IGHTLYHKEDL 144
>gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
Length = 482
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNTGLVAARERSAKVVGVFCLDPQILSRDDVAPARVTYMMGCLQALQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ S+L ++ G P +++P L K + + D EP+ + RD+ I+ + + +IE
Sbjct: 65 RYAQVGSQLLILHGNPVEVIPALAKALNAKAVFWNWDVEPYSQTRDRTIIDILKSNSIEF 124
Query: 137 I 137
+
Sbjct: 125 L 125
>gi|449016857|dbj|BAM80259.1| probable cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 669
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 3 PLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSN--- 58
P + P+S + WFR LR+HDN +LR + + CV++ D +F G S
Sbjct: 91 PTDSKRWPDSLPGTALLWFRNDLRLHDNEALRLANRA-ESLLCVYVFDERYFFGKSRFGG 149
Query: 59 ---VGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
+G ++ FL +C+ DL LR L V G P D++P+L +++ L F ++
Sbjct: 150 FLRIGEHRAYFLRECIVDLRQALRSRGQELIVEIGSPVDVIPRLVQKFGVQHLIFSKE 207
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 4 LSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK 63
+S PT P H++ W R+ LR+ D+ +L L+ CVF+ D S +
Sbjct: 36 ISLPT-PTIQTPHVLCWLRRDLRLQDHAALHHALQSGLPVACVFVFDSTILDSLPADDVR 94
Query: 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
F+L L+ L LR+ S L + G P +P L + ED EP RD
Sbjct: 95 VAFILDSLQSLQEQLRQHGSELITVHGDPVQQIPLLANHLNAQTVYANEDYEPAALTRDH 154
Query: 124 NI 125
+
Sbjct: 155 AV 156
>gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
Length = 441
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGS----SNVGINKWRFLLQCLE 72
++WF + LR+HDN +L K CV++++P WF +G ++WRFL Q L
Sbjct: 4 LYWFTRDLRLHDNAALLAASK-SDMLLCVYVVEPRWFKPGPLQCKTMGHHRWRFLWQSLI 62
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKL 99
L+ +LR L RL + G P ++P L
Sbjct: 63 GLERSLRALGQRLHIAWGDPETVIPAL 89
>gi|340785990|ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
gi|340551257|gb|AEK60632.1| Deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
Length = 510
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-----PWFAGSSNVGINKW-RFL 67
EK +V WFR+ LRM D+ +L LK CVF+ D P + +G ++ F+
Sbjct: 19 EKSLV-WFRRDLRMSDHAALHHALKNSAAVFCVFVFDTDILQPLL--DAGLGADRRVEFI 75
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ +LD+ LRKL L V G D++P L ++ + D EP + RD +
Sbjct: 76 RGSVTELDLELRKLGGGLLVRHGPAHDVIPALARQLGVNAVFSNHDYEPQARQRDAGV 133
>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
Length = 474
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP ++ + +++ CLE L
Sbjct: 5 ILFWHRRDLRISDNVGLAAAFELSPKLVGVFCLDPTILERDDIAPARVTYMIGCLEQLQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R+ S+L ++ P +P L + + + D EP+ K RDQ++ +E I V
Sbjct: 65 GYRQAGSQLLILHQDPRQGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKEKGIAV 124
>gi|392945665|ref|ZP_10311307.1| deoxyribodipyrimidine photolyase [Frankia sp. QA3]
gi|392288959|gb|EIV94983.1| deoxyribodipyrimidine photolyase [Frankia sp. QA3]
Length = 473
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V W R+ LR+ DNP+LR G +F+LD S G + FL +CL +LD
Sbjct: 5 VCWLRRDLRLSDNPALRAAAHGVDEVLVLFVLDDVL--RSPAGPVRLAFLHRCLRELD-- 60
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L RL V G P D++P + + + D P+G+ RD +
Sbjct: 61 -EQLGGRLCVRVGDPVDVVPAVARAVDARQVHIAADYGPYGRRRDSEV 107
>gi|404260535|ref|ZP_10963820.1| deoxyribodipyrimidine photo-lyase [Gordonia namibiensis NBRC
108229]
gi|403400974|dbj|GAC02230.1| deoxyribodipyrimidine photo-lyase [Gordonia namibiensis NBRC
108229]
Length = 428
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 20 WFRKGLRMHDNPSLR--EGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
W R+ LR+ D P+L G + C F++DP SS G + FL L ++D
Sbjct: 2 WLRRDLRLSDLPALSTARGTDDSSVLLC-FVVDPRLEKSS--GERRLAFLFDSLREVDA- 57
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
KL+ +L V+RG+P + +P+L K + D PFG+ RD+ + E+ +E
Sbjct: 58 --KLDGKLLVVRGRPDEEIPRLAKVVDAEAVHISADFTPFGRRRDEAVAEALGEIPLEAT 115
Query: 138 A 138
Sbjct: 116 G 116
>gi|376316713|emb|CCG00097.1| deoxyribodipyrimidine photo-lyase type I [uncultured Flavobacteriia
bacterium]
Length = 433
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K + W R+ LR DN L + K + VFI D + F+ + +++L
Sbjct: 2 KKALFWHRRDLRFEDNAGLFQAQKKADVVQAVFIFDITILDKLLKNDQRIIFIHRSIQNL 61
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
++ L V G P +++PK+ KE K + D EP+ RD+ I + L+I
Sbjct: 62 KKEYQRFGGDLKVYHGDPKELIPKIAKELKVDSVYTNRDYEPYALERDKFIFDKLKTLSI 121
Query: 135 EVIARVSHTLYDLDQL 150
+ I + +++ ++
Sbjct: 122 DFIGAKDNVIFEKSEI 137
>gi|440749032|ref|ZP_20928282.1| Cryptochrome [Mariniradius saccharolyticus AK6]
gi|436482734|gb|ELP38832.1| Cryptochrome [Mariniradius saccharolyticus AK6]
Length = 475
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFLLQ 69
+ ++ WFR LR+HDN +L + V+ DP G ++G+ K +FL +
Sbjct: 4 RRIIVWFRNDLRIHDNVTLSMACEKAEEVIPVYCFDPRHFGEIDLGMEKMGNLRAKFLKE 63
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+ +L NL+KL + L V++G P +P L + + F E+ K D + +
Sbjct: 64 TVSELRQNLQKLGADLVVLQGFPEKEIPNLAVSLQAEAIFFSEEVTDEEKQVDDALESTA 123
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+ I+ + HTL+ +D L
Sbjct: 124 WKKGIKTRSFWQHTLFHIDDL 144
>gi|333898405|ref|YP_004472278.1| DASH family cryptochrome [Pseudomonas fulva 12-X]
gi|333113670|gb|AEF20184.1| cryptochrome, DASH family [Pseudomonas fulva 12-X]
Length = 472
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA-----GSSNVGINKWRFLLQCLEDL 74
WF++ LR+ D+P+L+ L +++LDP GS +G+++ RFLL+ L L
Sbjct: 6 WFKQDLRLDDHPALQAAL-ASNCLLPLYVLDPALLQFDEFGSRRIGVHRARFLLESLTAL 64
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEW 103
D LR+ S+L V+ G+P +++ +L ++
Sbjct: 65 DSALRQRGSKLLVVSGKPEEVIAQLVGQF 93
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ W R+ LR+ DN +L L F+LDP SS G + FL L LD +
Sbjct: 5 IWWIRRDLRLTDNQALTAALTRAAQIVPCFVLDPRLLNSSYAGERRKAFLFSGLRVLDAD 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LR+ RL V G PA +L +L E + E D P+ + RD+ + R L I ++
Sbjct: 65 LRRRGGRLIVRCGDPAAVLSRLAAESGACAVYAERDYSPYARCRDEAV---ARALPIPLV 121
Query: 138 ARVSHTLYDLDQLKPD 153
T+ D L D
Sbjct: 122 LTDGLTIRRPDALLKD 137
>gi|363582222|ref|ZP_09315032.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium
HQM9]
Length = 433
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+HDN L +FI D G + F+ L D+
Sbjct: 6 IFWFRRDLRLHDNTGFFFALSENKNVLPIFIFDTEILGKLPENDARVSFIHDSLADMHSK 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+++N + + G+P I ++ K++K T + D EP+ RD+ + E I+
Sbjct: 66 LKEMNKGISIFHGEPIAIFQEIEKKYKVTKVYTNHDYEPYALERDKILTAFFEEKAIKFE 125
Query: 138 ARVSHTLYDLDQL 150
++ D++
Sbjct: 126 TYKDQVYFEKDEI 138
>gi|348681082|gb|EGZ20898.1| DNA photolyase [Phytophthora sojae]
Length = 516
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 20 WFRKGLRMHDNPSL--------REGLKGCTTFRCVFILD-PWFAGSSNVGINKWRFLLQC 70
W R+ LR+HDN +L ++G G ++I+ P G +++F+L+
Sbjct: 6 WLRRDLRLHDNLALSAALHLAKQQGDGGKVELIPLYIVHRPQIM---RCGARRFQFVLES 62
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
+EDL L + SRL V +G +L +L W T L F+ EP+ RD + L +
Sbjct: 63 VEDLADALEERGSRLVVAKGDGLQVLRRLLPAWGITHLYFDAVSEPYAVERDNRALALAK 122
Query: 131 ELNIEVIARVSHTLYDLD 148
L ++ + LY++D
Sbjct: 123 SLGVQTHVTRGYELYNMD 140
>gi|407958302|dbj|BAM51542.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 482
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRF 66
P + S ++ W R+ LR++D+ +L + + VF LD + ++ + +
Sbjct: 3 PMSDQSDHPLILLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAPARVAY 62
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
LL CL+ L + ++L S L V + P +LPKL +T+ D EP+ + RD +
Sbjct: 63 LLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVA 122
Query: 127 TLCRELNIEV 136
RE + +
Sbjct: 123 QALRERGLAI 132
>gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
Length = 512
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN +L L+ C CVF+ D + + F+ Q L +L LR
Sbjct: 27 WLRRDLRLADNAALYHALQQCEKLYCVFVFDDSILAALPRADRRVEFICQSLTELAAALR 86
Query: 80 KLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ R L RG P DI+P L ++ + +D EP RD +
Sbjct: 87 ETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQV 136
>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|451814540|ref|YP_007450992.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|2499552|sp|Q55081.1|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780509|gb|AGF51478.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 488
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRF 66
P + S ++ W R+ LR++D+ +L + + VF LD + ++ + +
Sbjct: 9 PMSDQSDHPLILLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAPARVAY 68
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
LL CL+ L + ++L S L V + P +LPKL +T+ D EP+ + RD +
Sbjct: 69 LLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVA 128
Query: 127 TLCRELNIEV 136
RE + +
Sbjct: 129 QALRERGLAI 138
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
WFR+ LR+ DNP+L ++ V+ILD AG ++ G ++W +L LE L +L
Sbjct: 17 WFRRDLRLADNPALTAAVRRGRPVVAVYILDDEDAGDWASGGASRW-WLHHSLERLAESL 75
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R SRL + RG A +L +L E + + EP+ RDQ I R EV
Sbjct: 76 RGRGSRLILRRGAAAAVLDRLISETGAEAVYWNRCYEPWATARDQAIKASLRLRGHEV 133
>gi|390955135|ref|YP_006418893.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
gi|390421121|gb|AFL81878.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
Length = 434
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
EK + WFR+ LR+ DN + L G +FI D + F+ + L+
Sbjct: 2 AEKVNIVWFRRDLRLDDNVGFYKALHGKFPVIPIFIFDSEILNELPKDDARLTFIFETLQ 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+ L++ S + + G+P I ++ E+ + D EP+ K RD I TL E
Sbjct: 62 KMRTELQEQGSSIALYHGKPEQIFKQIISEFDVQNVITNRDYEPYAKKRDAQIETLLAEK 121
Query: 133 NIEVIARVSHTLYDLDQL 150
I +++ D++
Sbjct: 122 EIGFYTFKDQVIFEKDEV 139
>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
Length = 425
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-----AGSSNVGINKWRFLLQCLEDL 74
WFR LR HDN L E + V+ DP + +G G+++ RF+L + +L
Sbjct: 9 WFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFILDAVREL 68
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+ L G P +I+P+L +++ + + + +N+ T +L I
Sbjct: 69 KEKFVAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETALWKLKI 128
Query: 135 EVIARVSHTLYDLDQL 150
+ + HTLY + L
Sbjct: 129 NLKHFIGHTLYHKEDL 144
>gi|257388282|ref|YP_003178055.1| DASH family cryptochrome [Halomicrobium mukohataei DSM 12286]
gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
Length = 483
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-----SNVGINKWRFLLQCLEDL 74
WFR+ LR HDN +LR + T ++ L G VG ++ +FL++ L DL
Sbjct: 7 WFRRDLRCHDNATLRRAVAEADTVVPLYCLPDRLTGEGMFGLDRVGPHRAQFLIESLADL 66
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+LR + L+V G P ++P+ +E+ + ++ P P + ++ + I
Sbjct: 67 RESLRDRDGELYVRSGDPGTVVPEAAEEFDADAVYWQALPGPEERDEAGSVRAGLADAGI 126
Query: 135 EVIARVSHTLYDLDQL 150
+ +HTLY D L
Sbjct: 127 DSETFWTHTLYHRDDL 142
>gi|119490469|ref|ZP_01622930.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119453940|gb|EAW35095.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 512
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DN + + FI+DPWF ++G + +FL + L LD +LR
Sbjct: 5 WFRRDLRLIDNDIVAQAAATDEEILPCFIIDPWFYQQPDIGGMRVQFLFESLACLDGSLR 64
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTC----LTFEEDPE-PFGKVRDQNIMTLCRELNI 134
L SRL++ G +++ L E L F D + +G+ RD ++ + L +
Sbjct: 65 DLGSRLYLFEGNSVEVIQTLTGELLELGYHPRLVFNRDIQVDYGRKRDHQVIEFYQRLGL 124
>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
Length = 435
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLED 73
K + WFR+ LR+ DN L LK + +FI D + + + F+ + ++D
Sbjct: 3 KVTLFWFRRDLRLDDNAGLYHALKERSAVLPLFIFDSEILENLDDPADARVTFIYEQIQD 62
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
+ L S L V G+P ++L L E + D EP + RD+ + +
Sbjct: 63 MKQQLNAKKSDLIVRHGKPLEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVAAWAAKAG 122
Query: 134 IEVIARVSHTLYDLDQLKPDSR 155
IE + L++ D++ D+R
Sbjct: 123 IEFLTFKDQCLFEKDEILTDAR 144
>gi|406662895|ref|ZP_11070977.1| Cryptochrome DASH [Cecembia lonarensis LW9]
gi|405553063|gb|EKB48369.1| Cryptochrome DASH [Cecembia lonarensis LW9]
Length = 474
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQ 69
K ++ WFR LR+HD+ L + V+ DP G N+ I+K RFL++
Sbjct: 3 KRVIVWFRNDLRVHDHAPLFYASQKAEEVIPVYCFDPRNFGKVNLEIDKTGNHRARFLIE 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+++L NL L L +++G+P ++L + K+++ + F E+ K + N+
Sbjct: 63 SVDNLKNNLVNLGGDLVILQGKPEELLVDIAKKYQVDAIFFSEEVTSEEKKVELNLEGHA 122
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+ I+ A +LY++ L
Sbjct: 123 WKHGIKTTAYWQSSLYNIQDL 143
>gi|255533599|ref|YP_003093971.1| DASH family cryptochrome [Pedobacter heparinus DSM 2366]
gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
Length = 430
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-----AGSSNVGINKWRFLLQ 69
K ++ WFR LR+HDN L E + + V+ DP + G++ GI + FLL+
Sbjct: 4 KKILVWFRNDLRLHDNEMLVEAIAKSDSILPVYFFDPRYFENTRFGTAKTGIVRASFLLE 63
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+ L ++ + +++G+P D++ L +++ + + P ++ L
Sbjct: 64 SILSLRKAFQRFGGDILLVQGKPEDMIRDLVEQFDIAEVYHHREVGPEETEISGHVEDLL 123
Query: 130 RELNIEVIARVSHTLYDLDQL 150
L I + + HTLY+ + L
Sbjct: 124 WTLKINLKHFIGHTLYNKEDL 144
>gi|374594255|ref|ZP_09667260.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
gi|373872330|gb|EHQ04327.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
Length = 434
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
+EK V WFR+ LR+ DN E LK +FI D + F+ + L+
Sbjct: 2 SEKVSVFWFRRDLRLDDNVGFLEALKSDLPVLPIFIFDTEILERLPKDDARVSFIHENLQ 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+ L+K S L + G+P ++ L K +K + D EP+ K RD I L
Sbjct: 62 KMRKELQKNGSSLAIYHGKPVEVFKDLLKNYKIQQVFTNRDYEPYAKKRDSEIEKLLESE 121
Query: 133 NIEVIARVSHTLYDLDQL 150
++ +++ D++
Sbjct: 122 TVQFHTFKDQVIFEKDEV 139
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +V + +++ CLE L
Sbjct: 5 ILFWHRRDLRISDNVGLAVARQQTQKVVGVFCLDPNILERDDVAPARVTYMIGCLESLQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
++ S L ++ +P +PKL + + + D EP+ K RD+ I+ +E I
Sbjct: 65 RYAEVGSELLILFNEPTTAIPKLAESLNAKAVFWNWDVEPYAKERDRTILAALKEKGI 122
>gi|336173293|ref|YP_004580431.1| deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
gi|334727865|gb|AEH02003.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
Length = 434
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN E LK +FI D + F+ + L+++
Sbjct: 7 IFWFRRDLRLDDNVGFFEALKAEHPVLPIFIFDSEILDELPENDARVSFIFETLQNMRQT 66
Query: 78 LR-KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+ + NS L + G+P DI L K++ + D EP+ K RD I + E I
Sbjct: 67 LQDENNSSLAMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSEIQSFLEENKINF 126
Query: 137 IARVSHTLYDLDQLKPD 153
+++ +++ D
Sbjct: 127 KTYKDQVIFEKNEVVKD 143
>gi|325285379|ref|YP_004261169.1| deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
Length = 429
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++K V WFR+ LR+ DN +L LK VFI D + + F+ + +
Sbjct: 2 SDKISVFWFRRDLRIEDNTALCNALKSGNPVLPVFIFDENILNELDADDARVTFIHKTIS 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+++ L++ NS + + P K+ + + F +D EP+ + RDQ I + +
Sbjct: 62 AINLTLKEYNSGVLCLHTTPELAWKKIVSTYNVERVFFNKDYEPYARERDQKITSFLNDK 121
Query: 133 NIEVIARVSHTLYDL-DQLKPDS 154
+I+V + +++ D LK D
Sbjct: 122 SIKVKSNKDSVIFEENDVLKNDG 144
>gi|189346874|ref|YP_001943403.1| deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
Length = 473
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 18 VHWFRKGLRMHDNPSL-REGLKGCTTFRCVFILDPWFAGSSNV-GINKWRFLLQCLEDLD 75
+HWFR+ LR+ DNPSL LKG + V+ILD AG + G N+W +L LE L+
Sbjct: 7 IHWFRQDLRLEDNPSLYYAALKG--SVLPVYILDDRNAGDFRMGGANRW-WLHHSLESLN 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
R L RL ++ G P +ILP L T + + EP+ RD + RE I
Sbjct: 64 ---RSLQGRLTLLMGDPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHKLREQGI 119
>gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
Length = 499
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVF---------ILDPWFAGSSNVGINKWR--FLL 68
WFR+ LR D+ +L L+ C CVF I+D W + R F+L
Sbjct: 17 WFRRDLRNTDHAALYYALEHCERVWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRIDFIL 76
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
L +LD LR L V+ G PA+++PKL E + + D EP RD +
Sbjct: 77 ASLAELDDALRANGGGLVVLYGDPAELVPKLAAELRVDAVFANHDYEPVAIERDATVGER 136
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
E + + T+++ D+L
Sbjct: 137 LAEKGRQWLTFKDQTIFERDEL 158
>gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 417
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFI---LDPW---FAGSSNVGINKWRFL 67
K ++WF LR+ DNP L E CV++ L P+ F+G +G ++ RF+
Sbjct: 2 HKTGLYWFTNDLRVADNPLLTEAASEVDQLICVYLYPQLTPFLAQFSGQQQLGAHRLRFV 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL 108
Q L+DL+ +L K RL VI LP L +++ T L
Sbjct: 62 DQALQDLNHSLAKQGQRLAVIHQTAEQTLPSLIEQYNVTHL 102
>gi|441513241|ref|ZP_20995072.1| deoxyribodipyrimidine photo-lyase [Gordonia amicalis NBRC 100051]
gi|441451858|dbj|GAC53033.1| deoxyribodipyrimidine photo-lyase [Gordonia amicalis NBRC 100051]
Length = 454
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ D P+L ++ F++DP SS G + FL L ++D
Sbjct: 2 WLRRDLRLSDLPALAAARGTDSSVLLCFVVDPRLEKSS--GERRLAFLFDSLREVDA--- 56
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
KL+ RL V+RG+P + +P+L + + D PFG+ RD+ + + +E
Sbjct: 57 KLDGRLLVVRGRPEEEIPRLARAVGAGSVHISGDFSPFGRRRDEAVDEALGDTPLEATG 115
>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
Length = 459
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQC 70
++ K + FR+ LR+ DN L L+ FI DP + N N ++FL++
Sbjct: 2 NSYKRSIFIFRRDLRVDDNTGLDYALENSEYVIPCFIFDPRLIEKNDNFNPNSFQFLIES 61
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
LEDL L ++L++ G +++ L + + D PF K RD+ C
Sbjct: 62 LEDLKHQLNDKGAKLYLFHGIAENVVTNLINKNLIDAVFVNRDYTPFSKKRDEAFKKACE 121
Query: 131 ELNIEVIARVSHTLYDLDQLK 151
N++ I+ L + D++K
Sbjct: 122 MYNVDFISCNDLLLNNPDKIK 142
>gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera versatilis 301]
gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera versatilis 301]
Length = 479
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Query: 4 LSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK 63
+S ++ EK +V WFR+ LR +D+ +L LK CVF+ D N ++
Sbjct: 1 MSQAQQKSTYEKSLV-WFRRDLRDYDHAALYHALKSSKKVYCVFVFDTAILNQLNDKADR 59
Query: 64 W-RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
F+ + + +L +L+K S L V+ G D +PKL + D EP RD
Sbjct: 60 RVEFIWESVRELKTSLQKHGSDLIVLHGNAGDEIPKLANTLLVNAVFTNHDYEPSAITRD 119
Query: 123 QNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ + +I H +++ D++
Sbjct: 120 AHVAEQLNKSSIAFHHYKDHVIFEKDEV 147
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCT-TFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
++HWFR+ LR+ DN +L VFI D G + +FLL L LD
Sbjct: 2 LIHWFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLTALD 61
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
LR L L + RG+P L L +E +T+ D P+ RD T+ REL
Sbjct: 62 GELRSLGLHLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDS---TIKREL 115
>gi|375148275|ref|YP_005010716.1| deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
gi|361062321|gb|AEW01313.1| Deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
Length = 435
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDI 76
+ WFR+ LR+ DN L LKG +FI D N + F+ L +
Sbjct: 6 IFWFRRDLRLDDNAGLYHALKGNNPVLPIFIFDTNILDQLPNTSDARVEFIHDALTGMQE 65
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L++L S L V+ P + KL K++ + D EP+ + RD I E I
Sbjct: 66 QLKELGSTLDVLHDTPLNAFKKLVKQYTIEAVYTNHDYEPYAQERDNRIARFLEEHGIAF 125
Query: 137 IARVSHTLYDLDQLKPD 153
+++ +++ D
Sbjct: 126 HTYKDQVIFEKNEVTKD 142
>gi|418250267|ref|ZP_12876553.1| deoxyribodipyrimidine photo-lyase [Mycobacterium abscessus 47J26]
gi|420933490|ref|ZP_15396765.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
1S-151-0930]
gi|420939647|ref|ZP_15402916.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
1S-152-0914]
gi|420943752|ref|ZP_15407008.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
1S-153-0915]
gi|420948115|ref|ZP_15411365.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
1S-154-0310]
gi|420953902|ref|ZP_15417144.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0626]
gi|420958076|ref|ZP_15421310.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0107]
gi|420964005|ref|ZP_15427229.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-1231]
gi|420994018|ref|ZP_15457164.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0307]
gi|420999795|ref|ZP_15462930.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0912-R]
gi|421004317|ref|ZP_15467439.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0912-S]
gi|353450347|gb|EHB98742.1| deoxyribodipyrimidine photo-lyase [Mycobacterium abscessus 47J26]
gi|392138249|gb|EIU63986.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
1S-151-0930]
gi|392145162|gb|EIU70887.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
1S-152-0914]
gi|392148849|gb|EIU74567.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
1S-153-0915]
gi|392152815|gb|EIU78522.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0626]
gi|392155145|gb|EIU80851.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
1S-154-0310]
gi|392178577|gb|EIV04230.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0912-R]
gi|392180120|gb|EIV05772.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0307]
gi|392193020|gb|EIV18644.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0912-S]
gi|392246918|gb|EIV72395.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-1231]
gi|392247802|gb|EIV73278.1| deoxyribodipyrimidine photolyase [Mycobacterium massiliense
2B-0107]
Length = 455
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DNP+LR + VFILDP GS+ + W L + DLD
Sbjct: 3 VIWWARRDLRLADNPALRAAAESGDVL-AVFILDPQLLGSAPRPRDAW--LAANVLDLD- 58
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R+L+ RL + G P +L +L + T + + PFG+ RD ++ ++ ++
Sbjct: 59 --RQLDGRLCLKSGAPGQVLVELAECIGATEVHVARETTPFGRRRDTSVSAELAKIGVDW 116
Query: 137 I 137
I
Sbjct: 117 I 117
>gi|395543767|ref|XP_003775403.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Sarcophilus
harrisii]
Length = 597
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
EDLDI+LRKLNSRLFV+RGQP D+ P+LFK T ++P
Sbjct: 90 EDLDISLRKLNSRLFVVRGQPTDVFPRLFKVRGAAAATEGQEP 132
>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
Length = 504
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP--------WF----AGSSNVGIN 62
K+ + WFR+ LR DN +L L+ C C F+ D W A + V
Sbjct: 12 KNGLVWFRRDLRTGDNAALYYALRHCERVWCAFVFDTTILQPLINWAHRRNAHAGKVQDA 71
Query: 63 KWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
+ F+L +E+LD +L + L V+ G P D +PKL + + D EP RD
Sbjct: 72 RIEFILASVEELDRSLEEGGGALIVLHGDPVDAIPKLAAQLPVDAVFTNHDYEPSAIERD 131
Query: 123 QNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ + R ++ +++ D+L
Sbjct: 132 ETVADRLRADGRRLLTFKDQVIFERDEL 159
>gi|321453625|gb|EFX64843.1| hypothetical protein DAPPUDRAFT_333781 [Daphnia pulex]
Length = 179
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 56 SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110
++ VG N+WRFL+Q L+DL+ NL+K+ S LF+++ P ++ K FKEW LT
Sbjct: 10 NAKVGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESPTEMFKKYFKEWNIKKLTL 64
>gi|390569912|ref|ZP_10250187.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|420254982|ref|ZP_14757945.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
gi|389938145|gb|EIM99998.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|398047192|gb|EJL39755.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
Length = 504
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP--------WFAGSSN----VGINKWRFL 67
WFR+ LR DN +L LK C CVF+ D W + V + F+
Sbjct: 17 WFRRDLRTGDNAALYYALKHCERVWCVFVFDTTILQPLIDWANEHDDHKGKVQDRRIEFI 76
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L LE+LD +L++ L V+ G P + +P+L + + + D EP RD+++
Sbjct: 77 LASLEELDRSLKEGGGGLIVLHGDPHEEIPRLAAQLEAEAVFTNHDYEPVAIERDESVAE 136
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
R+ +++ +++ ++L
Sbjct: 137 RLRDDGRQLLTFKDQVIFEREEL 159
>gi|387824331|ref|YP_005823802.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
Length = 464
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++K +HWFR+ LR+ DNP+L + T +FILD + ++G +L L
Sbjct: 2 SKKVAIHWFRQDLRLADNPALYHASQADETI-TIFILDE----NQDIGGASKLWLHHSLN 56
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+L+ R LN +L G P +I+ KL KE K T + + + RD I +E
Sbjct: 57 NLN---RSLNDKLNFYNGNPLEIIKKLIKENKVTDFYWNRCYDKYSINRDTQIKQFLQEQ 113
Query: 133 NIEV 136
+I V
Sbjct: 114 SINV 117
>gi|385206442|ref|ZP_10033312.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
gi|385186333|gb|EIF35607.1| deoxyribodipyrimidine photolyase [Burkholderia sp. Ch1-1]
Length = 499
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFI---------LDPWFAGSSNVGINKWR--FLL 68
W R+ LR DN +L LK C CVF+ +D W A + R F+L
Sbjct: 17 WLRRDLRNTDNAALYYALKHCERVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRIEFIL 76
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
L +LD LR L V+ G PAD++P L E + D EP RD+ +
Sbjct: 77 AALGELDEALRTDGGGLIVLYGNPADLVPTLADELGADAVFANHDYEPVAIERDETVREQ 136
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
E + + +++ D++
Sbjct: 137 LAEAGRQWLTFKDQVIFERDEV 158
>gi|427738511|ref|YP_007058055.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
gi|427373552|gb|AFY57508.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
Length = 482
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 59/123 (47%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN + LK VF LDP +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNTGIAAALKKTHKVVGVFCLDPNILKGDDVAAVRVTYMIGCLQKLQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ S+L ++ P + KL K + + + D EP+ + RD +++ +E IE
Sbjct: 65 RYAQMGSQLLILWDNPVVAIAKLAKALNSKAVFWNWDVEPYSQQRDADVIDALQEQGIEY 124
Query: 137 IAR 139
+ +
Sbjct: 125 LEK 127
>gi|410621443|ref|ZP_11332290.1| cryptochrome DASH [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158958|dbj|GAC27664.1| cryptochrome DASH [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 439
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS--------NVGINKW 64
++K +HWFRK LR+ DN SL E CV++ P S ++G ++
Sbjct: 2 SKKVGLHWFRKDLRIQDNASLAELASQVDELVCVYVYQPEANQDSINELHKKESIGKHRL 61
Query: 65 RFLLQCLEDLDINLRKLNSRLFVI---RGQPADILPKLFKEWKTTCLT------FEEDPE 115
F+ Q L DL+ L N RL V+ + P + + L K T L+ F E E
Sbjct: 62 NFIHQTLHDLNSTLSDFNQRLIVLSTNKADPVEAILTLVKALNVTHLSAQWHCGFNERKE 121
Query: 116 PFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ + +D + + LNIE I S TL+++ Q
Sbjct: 122 -WQQTQD---LVIEAGLNIEFIQVNSSTLFNVSQF 152
>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|97047786|sp|Q3IPX9.1|CRYD_NATPD RecName: Full=Cryptochrome DASH
gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 474
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQCLE 72
V WFR LR+ DNP+L + + T V+ DP G G ++ F Q +
Sbjct: 5 VVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAVA 64
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DL +LR L V G+PA ++P+L + + + P + R ++ + +
Sbjct: 65 DLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDDA 124
Query: 133 NIEVIARVSHTLYDLDQL 150
I + R +HTLY D L
Sbjct: 125 GIALRQRWTHTLYHPDDL 142
>gi|262201249|ref|YP_003272457.1| deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
gi|262084596|gb|ACY20564.1| Deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
Length = 434
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ D P L C F++DP SS G + FL L +LD
Sbjct: 9 WLRRDLRLGDLPPLSAAAANGRVLVC-FVVDPRLEKSS--GERRLAFLFDSLRELDT--- 62
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
KL RL V+ G+P +P+L + ED PFG+ RD + E+ +E +
Sbjct: 63 KLGGRLLVVSGRPDVEIPRLASAVDAGSVHVSEDFSPFGRRRDAAVAEALGEIPLESVG 121
>gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
17025]
gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
ATCC 17025]
Length = 470
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN-KWRFLLQCLE 72
E ++ WFR+ LR+ DNP +RE VFILDP + +G KWR L +E
Sbjct: 3 EAPLILWFRRDLRLTDNPMVREAAATGRPLVPVFILDP---ETERLGAAPKWRLGL-AVE 58
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L +L SRL + RG ++L +L E + + EP + RD+ + +
Sbjct: 59 AFAQALERLGSRLILRRGPALEVLGRLAAETGALGVRWSRLCEPGWRSRDEGVKAGLKRQ 118
Query: 133 NIEVIARVSHTLYD 146
I + HTL++
Sbjct: 119 GIAAESHAGHTLFE 132
>gi|448381750|ref|ZP_21561726.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
gi|445662831|gb|ELZ15594.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
Length = 468
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW-FAGSSNVGINKWRFLLQCLEDLDI 76
V W R+ LR DN L + +F+LDP +S V + LL+ LEDL
Sbjct: 3 VFWHRRDLRPDDNRGLARAAAANESVVPLFVLDPTVLDHASPVRVAT---LLEALEDLRS 59
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R+ S L V+RG+ + ++P++ E+ T + + ED + RD+ + + I
Sbjct: 60 QYRERGSDLLVVRGEASAVVPEVAAEYDATTVVWNEDYSGLARERDRAVRAALEDEGI-- 117
Query: 137 IARVSHTLYDLDQLKPDS 154
+ +++D +P S
Sbjct: 118 ---AAESVHDAIHHEPGS 132
>gi|387792261|ref|YP_006257326.1| deoxyribodipyrimidine photolyase [Solitalea canadensis DSM 3403]
gi|379655094|gb|AFD08150.1| deoxyribodipyrimidine photolyase [Solitalea canadensis DSM 3403]
Length = 434
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDI 76
V W R+ LR+ DN +L LK + +FI D + + F+ L L+
Sbjct: 7 VCWLRRDLRLEDNAALYHALKQASPVLLLFIFDTTILNQLEDKNDARVTFIHDQLCALND 66
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L KL S L V G P+ I +L +E+ + D EP+ RDQ+I L ++ IE
Sbjct: 67 ELVKLGSSLLVKHGTPSAIWTELIQEYPIKTVYANHDYEPYATQRDQSIKELLQQSGIEF 126
Query: 137 IARVSHTLYD 146
I +++
Sbjct: 127 ITFKDQAIFE 136
>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
Length = 515
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFL 67
++K ++ W+R LR+HD+ L +K V+ DP G ++ G+ + +FL
Sbjct: 24 SDKRVLIWYRNDLRVHDHEPLHLAVKAQAEIIPVYCFDPRQFGKTSFGFPKTGVFRAQFL 83
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ + DL +LRKL S L V P ++P+L K+ + + + + +
Sbjct: 84 LESVTDLRNSLRKLGSDLIVRYDFPETVIPELVKQLGIDEVYYYREVTSEELAVETTLEK 143
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
L++ + + TLYDLD L
Sbjct: 144 ALNPLDVSLKSYWGATLYDLDDL 166
>gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
DSM 43043]
gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
DSM 43043]
Length = 455
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WFR+ LR+ D+P+L L T+ VF+LDP G + R L+ L L
Sbjct: 5 VLWFRRDLRVSDHPALLAALDSGTSVLPVFVLDPRLL---ETGQPRSRRLITSLRAL--- 58
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L+ L V G P D++P++ +E + + PFG+ RD + + ++
Sbjct: 59 ADSLDGHLVVRTGNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVALQSEGRRLV 118
Query: 138 A 138
A
Sbjct: 119 A 119
>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
Length = 477
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN----VGINKWRFLL 68
T ++ W R+ LR+ DN L V++LDP + + + FL+
Sbjct: 2 TSSRVLFWHRRDLRLADNLGLVAATDISPAVTGVYVLDPQLINPTEHLPPMAPARLWFLI 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ L +L R+ SRL V++G P +LP+L ++ + + D EP+ + RD+ +
Sbjct: 62 ESLVELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQV 118
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + T +F LD ++ + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNVGLTQASQEGQTVVGIFCLDENILKRDDIASARVTYMIGCLQHLQK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+++ S+L ++ G+P + +PKL + + + D EP+ + RD+ + NI+V
Sbjct: 65 RYKQIGSQLLIMSGKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAANIQV 124
>gi|428201469|ref|YP_007080058.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
gi|427978901|gb|AFY76501.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
Length = 477
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LD ++ + +++ CL++L
Sbjct: 5 ILFWHRRDLRISDNIGLAAARQKSSRVVGVFCLDRNLLKRDDIAPARITYMIGCLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+L S+L +++G P + L + K + F D EP+ K RD+ + +E I V
Sbjct: 65 KYLQLGSQLLIVQGDPNQAITALAEALKVQAVFFNLDIEPYAKQRDEKVKEALKEKGIAV 124
>gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
Length = 434
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN E LKG +FI D + F+ + L+++
Sbjct: 7 IFWFRRDLRLDDNVGFYEALKGNHPVLPIFIFDSEILSKLPKDDARITFIHETLQNIRQT 66
Query: 78 LR-KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+ S + + G+P ++ +L K++ + D EP+ K RD + ++ E NIE
Sbjct: 67 LQDNYRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEVKSVLAEHNIEF 126
Query: 137 IARVSHTLYDLDQL 150
+++ +++
Sbjct: 127 KTYKDQVVFEKNEI 140
>gi|348029289|ref|YP_004871975.1| deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
gi|347946632|gb|AEP29982.1| deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
Length = 481
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WF++ LR+ DN +L+ + ++I++P ++ I WRF++Q ++DL+ L
Sbjct: 2 WFKRDLRLRDNEALKTACEQNRPLALIYIVEPIMLNDPHMDIRHWRFIVQSIKDLNEQLA 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKT-TCLTFEEDPEPFGKVRDQNIMTLC 129
+ NS + ++ G D+ +L ++++ ++ +E RD+++ C
Sbjct: 62 EYNSSISILYGAALDVFSQLHEKYQIKQIVSHQEVGLTHTYSRDKSVSNWC 112
>gi|443674351|ref|ZP_21139383.1| Deoxyribodipyrimidine photolyase [Rhodococcus sp. AW25M09]
gi|443412978|emb|CCQ17722.1| Deoxyribodipyrimidine photolyase [Rhodococcus sp. AW25M09]
Length = 442
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L + +F+LD S G + FL + LE LD
Sbjct: 5 WFRRDLRLGDLPTLTAAAESGDPVLGLFVLDDRLLKPS--GGPRRDFLFRSLEALD---E 59
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L+ RL V+RG P ++PK+ K T + D P+G+ RD +
Sbjct: 60 QLDGRLMVVRGDPETVVPKVAKAIGTEEVHISADYGPYGRERDARV 105
>gi|343496946|ref|ZP_08735031.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342820399|gb|EGU55222.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 444
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-----PWFAGSSNVGINKWRFLLQC 70
+ V+WF LR+ DNP+L L+ T C++ LD P + +G + FLLQ
Sbjct: 3 NAVYWFTNDLRIEDNPALIRALQTENTLHCLYCLDPRSLKPGRYSTKPIGEKRLSFLLQS 62
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L +LD LR L V P D+ +L++++ + + + K + +
Sbjct: 63 LAELDETLRAFGQHLHVYLENPDDLFCRLYQQYSVRRVHHSVNAGLYEKAF---FSRVSQ 119
Query: 131 ELNIEVIARVSHTLYDLDQLKPD 153
++ + A SHTL++ + L D
Sbjct: 120 RSDVVLNASHSHTLFNPESLPFD 142
>gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M]
gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M]
Length = 447
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L C F++DP SS G+ + +FL L L+
Sbjct: 7 WFRRDLRLGDHPALAAAADSEEVLAC-FVVDPRLEASS--GLRRLQFLGDSLRQLN---D 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L RL V RG+P +P + K + + + D PFG+ RD+ +
Sbjct: 61 ALQGRLLVTRGRPEQRIPLIAKAIEASSVHVSGDFAPFGRRRDERVAA 108
>gi|379733707|ref|YP_005327212.1| Deoxyribodipyrimidine photo-lyase type I (fragment), partial
[Blastococcus saxobsidens DD2]
gi|378781513|emb|CCG01163.1| Deoxyribodipyrimidine photo-lyase type I (fragment) [Blastococcus
saxobsidens DD2]
Length = 199
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 20 WFRKGLRMHDNPSL---REGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
WFR+ LR+ D+P+L R+ VF+ D G S G + RFLL CL LD
Sbjct: 7 WFRRDLRLRDHPALLTARDAAGPDGDVLPVFVFDDRLWGPS--GAPRRRFLLDCLAALDD 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L L + G P +LP L E T + D P+G+ RD+ +
Sbjct: 65 DL---GGALVLRSGDPTRLLPALVHEAGATSVHVSADAGPYGRRRDEAV 110
>gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
Ar-4]
gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
Ar-4]
Length = 433
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR------FLLQCLEDL 74
FR+ LR+ DN L + L+ C +FI+DP V N ++ F++ L +L
Sbjct: 7 FRRDLRLEDNTCLIKALRECDEVVPLFIIDP-----RQVEDNPYKSPFAIGFMIDSLLEL 61
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
D +L+ + SRL +++G P +I+PK+ + ED PF + RD+ I
Sbjct: 62 DQDLKTMGSRLHLLKGFPEEIIPKI----NADAVYMNEDYTPFSRQRDERI 108
>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
Length = 458
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK- 63
S P+N + + WFR LR+HDN L + V+ DP G S+ G +K
Sbjct: 116 SDPSNAAGIRRASIVWFRNDLRVHDNECLNSANNESMSVLPVYCFDPREYGKSSSGFDKT 175
Query: 64 ----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
FL++ + DL NL+ S L V G+P +L +L K + ++
Sbjct: 176 GPYRASFLIESVTDLRKNLQDRGSDLVVRVGKPETVLVELAKAIGADAVYAHKEVSHDEV 235
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ I ++ +EV TLY +D L
Sbjct: 236 KAEDKIEAAMKDEGVEVKYFWGSTLYHVDDL 266
>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 486
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN------KWRFLLQCLED 73
WFR LR+ D+ L + + ++ LDP G +++G+ + +FLL+ L D
Sbjct: 6 WFRTDLRLLDHQPLTRACQQGSPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLLESLAD 65
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L LR S L + +GQP ++P L +EW + E+ K + R L
Sbjct: 66 LRQQLRSRGSDLVIRQGQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVAAAVERALRSLG 125
Query: 134 IEVIARVSHTLYDLDQL 150
I + HTLY + L
Sbjct: 126 IRLQVDWGHTLYHPEDL 142
>gi|383322123|ref|YP_005382976.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325292|ref|YP_005386145.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491176|ref|YP_005408852.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436443|ref|YP_005651167.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|339273475|dbj|BAK49962.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|359271442|dbj|BAL28961.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274612|dbj|BAL32130.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277782|dbj|BAL35299.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
Length = 479
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR++D+ +L + + VF LD + ++ + +LL CL+ L + +
Sbjct: 13 WHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAPARVAYLLGCLQSLQDHYQ 72
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+L S L V + P +LPKL +T+ D EP+ + RD + RE + +
Sbjct: 73 RLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERGLAI 129
>gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
Length = 554
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WFR+ LR+ D+P+L + +FILDP G+ + LL L LD
Sbjct: 5 VVWFRRDLRLGDHPALHQAASEGAVLP-LFILDPALLQHPETGVARVGVLLDNLAALDHE 63
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF-GKVRDQNI 125
L++L SRL V G+PA L + K ++ + D E G+VRD +
Sbjct: 64 LKQLASRLLVRWGEPAACLLSVVKAYRADAVLAHVDSERIVGRVRDARV 112
>gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
Length = 447
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L C F++DP SS G+ + +FL L L+
Sbjct: 7 WFRRDLRLGDHPALAAAADSEEVLAC-FVVDPRLEASS--GLRRLQFLGDSLRQLN---D 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L RL V RG+P +P + K + + + D PFG+ RD+ +
Sbjct: 61 ALQGRLLVTRGRPEQRIPLIAKAIEASSVHVTGDFAPFGRRRDERVAA 108
>gi|372269296|ref|ZP_09505344.1| cryptochrome-like DNA photolyase [Alteromonas sp. S89]
Length = 434
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 20 WFRKGLRMHDNPSLREG---LKGCTTFRCVFILDPWFAGSSNVGI---NKWR--FLLQCL 71
WF LR HDN +L + G T ++ DP F + G K+R FLLQ L
Sbjct: 5 WFLHNLRSHDNQALTQACASANGDTPVIALYCFDPQFFSTDPFGFPRTGKFRAQFLLQSL 64
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
EDL L LN L + +G PA ++P+L E T L + + RD+ + +
Sbjct: 65 EDLKQQLADLNIPLLIRQGAPAQVIPELVTEHAVTELFLQRE-----WTRDERTVLTSLQ 119
Query: 132 LNIEVIARVSHTLYDLDQLKPD 153
+ A HT YD + PD
Sbjct: 120 AAPAMDAVHIHTDYDQFLIHPD 141
>gi|352095147|ref|ZP_08956250.1| Deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8016]
gi|351679158|gb|EHA62300.1| Deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8016]
Length = 492
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN----VGINKWRFLL 68
T ++ W R+ LR+ DN L+ ++ V++LDP + + FL+
Sbjct: 2 TASRVLFWHRRDLRLADNLGLQAAVEISPAVTGVYVLDPALIHPPESLPPMAPARLWFLV 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ L +L R + SRL V+ G P +LP+L + + + D EP+ + RD+ +
Sbjct: 62 ETLRELQQRWRDVGSRLLVVAGDPVQVLPRLASLLEAPAVVWSRDVEPYSRERDRQV 118
>gi|443490099|ref|YP_007368246.1| DNA photolyase, PhrI [Mycobacterium liflandii 128FXT]
gi|442582596|gb|AGC61739.1| DNA photolyase, PhrI [Mycobacterium liflandii 128FXT]
Length = 447
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L C F++DP SS G+ + +FL L L+
Sbjct: 7 WFRRDLRLGDHPALAAAADSEEVLAC-FVVDPRLEASS--GLRRLQFLGDSLRQLN---D 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L RL V RG+P +P + K + + + D PFG+ RD+ +
Sbjct: 61 ALQGRLLVTRGRPEQRIPLIAKAIEASSVHVTGDFAPFGRRRDERVAA 108
>gi|357123300|ref|XP_003563349.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 587
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSN------VGINKWRFLLQC 70
V WFR LR+ DN +L V+ +DP FAG ++ G + +FL++C
Sbjct: 90 VVWFRNDLRVLDNEALVRAWAAAEAVLPVYCVDPRIFAGVTHRFGFPKTGALRAQFLIEC 149
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
LEDL NL+K L V G+P DILP + K
Sbjct: 150 LEDLKQNLQKRGLNLLVRHGKPEDILPAIAK 180
>gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
tsutsugamushi str. Ikeda]
gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
tsutsugamushi str. Ikeda]
Length = 505
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
W R+ LR+ DN E LK +FI D + SN + FL + +L+ L
Sbjct: 10 WLRRNLRLEDNKPFAEALKSSKKIIPIFIFDTTILQNFSNPLDRRLSFLANTIYNLNSEL 69
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
++L L V+ G +I+PKL ++ + +E+ +P +RDQ I L
Sbjct: 70 QELEGNLLVLYGNSVEIIPKLIEKLNIQTIYADEEYDPENVIRDQKITNL 119
>gi|411117128|ref|ZP_11389615.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713231|gb|EKQ70732.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 493
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP +V + ++L CL+ L
Sbjct: 5 ILFWHRRDLRLADNVGLAAARQRSSKVVGVFCLDPTILQRDDVAPVRVSYMLGCLQSLQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
K+ S+L +++ P + L + + +D EP+ + RD+ + RE IE
Sbjct: 65 GYAKVGSQLLIVKTLPQKGIVNLATTLNARAVFWNQDVEPYSRARDRTVAAALREQGIE 123
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFL 67
T K ++ WFR LR+HD+ +L E L+ + D +++ G K +FL
Sbjct: 2 TNKRILIWFRNDLRLHDHEALNEALQEKADIIPFYCFDERQFRTTSYGFPKTGKFRAQFL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ + DL +L+KL S L + +G P I+P++ + T L + E+ ++ +
Sbjct: 62 LESVADLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYYHEEVTAEELTVEKRLKK 121
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
+ NI+V + TLY D L
Sbjct: 122 ALAKCNIKVESFWGTTLYHPDNL 144
>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
Length = 499
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFI---------LDPWFAGSSNVGINKWR--FLL 68
W R+ LR DN +L LK C CVF+ +D W A + R F+L
Sbjct: 17 WLRRDLRNTDNAALYYALKHCERVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRIEFIL 76
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
L +LD LR L V+ G PA+++PKL E + D EP RD +
Sbjct: 77 AALGELDEALRADGGGLIVLYGNPAELVPKLADELGVDAVFANHDYEPVAIERDGTVRER 136
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
E + + +++ D++
Sbjct: 137 LAEAGRQWLTFKDQVIFERDEV 158
>gi|407683883|ref|YP_006799057.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245494|gb|AFT74680.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
Length = 435
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-----PWFAGSSNVGINKWRFLLQCLE 72
++WFR LR+HDN ++ + ++ILD P G + +G ++ FLLQ L
Sbjct: 18 LYWFRHDLRLHDNAAISSLCEAVQQVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQTLV 77
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112
DL L KL L +++G PA+ L +L K + + L E
Sbjct: 78 DLKRQLAKLGHDLLIVKGDPAECLVQLMKSGQYSHLGVSE 117
>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
Length = 437
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
S +K + WFR+ LR+ DN LK +FI DP + + F+ + L
Sbjct: 2 SRDKINIFWFRRDLRLDDNVGFLASLKEEHPVMPIFIFDPEILDNLPEDDARVTFIFETL 61
Query: 72 EDLDINLRK-LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
+D+ L++ +S + + G+P ++ +L K + + D EP+ K RD+ I L
Sbjct: 62 QDMRNELQENHHSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPYAKDRDEKIQKLLD 121
Query: 131 ELNIEVIARVSHTLYDLDQL 150
E N++ +++ D++
Sbjct: 122 ENNVKFETFKDQVIFEKDEV 141
>gi|406596892|ref|YP_006748022.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
gi|406374213|gb|AFS37468.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
Length = 435
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 8 TNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-----PWFAGSSNVGIN 62
T + + ++WFR LR+HDN ++ + ++ILD P G + +G +
Sbjct: 8 TKRTNNNQRGLYWFRHDLRLHDNAAISALCEAVQQVTFLYILDDKAFTPTTYGFAPMGKH 67
Query: 63 KWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112
+ FLLQ L DL L KL L +++G PA+ L +L K + + L E
Sbjct: 68 RHTFLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKSGQYSHLGVSE 117
>gi|428301495|ref|YP_007139801.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
gi|428238039|gb|AFZ03829.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
Length = 476
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 58/122 (47%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L +F LDP +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRIADNTGLATARDRTHRVIGLFCLDPNILNPDHVAPVRVTYMIGCLQALQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ S+L +++G+P ++P L + + D EP+ + RD ++ +E I+
Sbjct: 65 RYAEVGSQLLIVQGEPTQVIPTLATALGAKAVFWNWDVEPYSQKRDHTVIDALKEQGIDY 124
Query: 137 IA 138
+A
Sbjct: 125 LA 126
>gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
Length = 441
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 19/147 (12%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW--------FAGSSN---VGINKWRF 66
++WF LR+ DN L++ + C++I + AG N +G +++RF
Sbjct: 5 LYWFEHDLRLADNLPLQQTIAQIDQLHCIYIFNAADFSTTKKKGAGQFNQRHMGQHRYRF 64
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK-VRDQNI 125
+ Q L+DL L +L + G+P DI+ +L T F + F V ++N+
Sbjct: 65 IRQALDDLQSQLHTFGQQLHIYYGEPLDIIEQL-----NTQFNFTHIGKHFHTGVYERNL 119
Query: 126 MTLCR--ELNIEVIARVSHTLYDLDQL 150
++ + N +I S+TLYD+D L
Sbjct: 120 ISALKIQYPNKTIINTNSYTLYDIDDL 146
>gi|448825355|ref|YP_007418286.1| deoxyribodipyrimidine photolyase [Megavirus lba]
gi|444236540|gb|AGD92310.1| deoxyribodipyrimidine photolyase [Megavirus lba]
Length = 152
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV--GINKWRFLLQCLEDLD 75
+H FR+ LR+ DN SL L+ +FI P N N +F+++ L DL+
Sbjct: 9 IHIFRRDLRLEDNTSLLLALQESKYVIPLFIFTPTQVSEKNKLKSSNSIQFMIESLYDLN 68
Query: 76 --INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
IN RL+ G D++ ++ K + + +D P+ RD+ I C + N
Sbjct: 69 SQINFLDKKLRLWTTYGNEIDVIDEIHKNINVSAIYINDDYTPYSIKRDKKIQNYCDQQN 128
Query: 134 I 134
I
Sbjct: 129 I 129
>gi|436834800|ref|YP_007320016.1| Deoxyribodipyrimidine photo-lyase [Fibrella aestuarina BUZ 2]
gi|384066213|emb|CCG99423.1| Deoxyribodipyrimidine photo-lyase [Fibrella aestuarina BUZ 2]
Length = 452
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN-KWRFLLQCLEDLDI 76
+ W R+ LR+HDN +L LK +FI D N + + F+ + + +
Sbjct: 9 IMWHRRDLRLHDNAALYYALKAGRPVLPLFIFDKDILDHLNDKRDRRVEFIYEEVLAMQQ 68
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L K S L V G+P D+ +L E+ + D E + K RD + T + +N
Sbjct: 69 ALHKQGSTLLVRYGRPLDVFKELASEYTLANVFTNYDYETYAKGRDAEVATYLKSVNAGF 128
Query: 137 IARVSHTLYDLDQL 150
+ TL+D D++
Sbjct: 129 HSYKDQTLFDRDEV 142
>gi|359447492|ref|ZP_09237086.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20439]
gi|358038590|dbj|GAA73335.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20439]
Length = 436
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSN----VGINKWRFLL 68
+K +++W + LR+ DNP L + + VF+++P WF +S G++K RFL+
Sbjct: 2 KKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNSYQQKPYGVHKQRFLM 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +L ++ +L L +I G P ++L + E + + + G + I L
Sbjct: 62 QSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQ---IGVYEQRQISAL 118
Query: 129 CRELNIEVIARVSH-TLYDLDQL 150
+ V V TLY QL
Sbjct: 119 KSKCTTVVFKSVMQDTLYQQQQL 141
>gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans
CJ2]
gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas
naphthalenivorans CJ2]
Length = 477
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DN +L LK C C F+ D S + F+ + L DL+ L
Sbjct: 2 WFRRDLRLQDNAALHHALKSCEQVFCAFVFDRAILDSLPKADRRVEFIRESLVDLNRQLA 61
Query: 80 KLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
KL + L + G D LP L + D EP RD + L +E
Sbjct: 62 KLALPAGLLIRHGTALDALPALASRLSVDAVFANHDDEPCSLARDAEVQGL-----LECA 116
Query: 138 ARVSHTLYD 146
HT D
Sbjct: 117 GVAFHTFKD 125
>gi|336476980|ref|YP_004616121.1| deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
gi|335930361|gb|AEH60902.1| Deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
Length = 457
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQCLEDLDINLR 79
FR+ LR+ DN +L L+ FI DP + + ++F+++ L DL
Sbjct: 12 FRRDLRIDDNTALINALEQSDAVIPCFIFDPAQIKNNEYFSKSAFQFMIESLRDLKQQFD 71
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
K NS L++ G D++ L E + +D PF K RD I + E ++ I
Sbjct: 72 KRNSHLYLFYGDSTDVIRNLKHEVDPEAVFLNKDYTPFSKKRDSAIKQISTEYGMDFI 129
>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354552505|ref|ZP_08971813.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353555827|gb|EHC25215.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
Length = 491
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFL 67
+ K ++ W+R LR+HD+ + + +K ++ D +++ G K +FL
Sbjct: 7 SNKKILIWYRNDLRIHDHEPMYQAIKEGALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFL 66
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ + +L +L+ L S L V +G P I+P+L KE + + F E+ ++ +
Sbjct: 67 LESVANLRQSLQDLGSNLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQ 126
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
+ L ++V TLY D L
Sbjct: 127 ALKPLKVKVQGFWGSTLYHWDDL 149
>gi|441503036|ref|ZP_20985043.1| Cryptochrome [Photobacterium sp. AK15]
gi|441429252|gb|ELR66707.1| Cryptochrome [Photobacterium sp. AK15]
Length = 435
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA-----GSSNVGINKWRFLLQCLEDLD 75
F+ LR+HDNP+L K C++ L A + +G + +FLLQ L DL+
Sbjct: 8 FQNDLRLHDNPALALAAKEVNELICIYCLPQHKANMLPYSVTQLGTQRQQFLLQSLTDLN 67
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL-NI 134
L + L ++ P +ILP+L ++ + L + G +Q+ L + +
Sbjct: 68 RQLNQCRQHLVILLDHPLNILPELITQYNVSALYRSQHA---GFYENQSWQILKKRYPYL 124
Query: 135 EVIARVSHTLYDLDQLKPD 153
+ SHTL+D +L D
Sbjct: 125 QFTTVASHTLFDQPELPFD 143
>gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
Length = 484
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR DN L + VF LDP G ++ + +++ CL+ L+
Sbjct: 10 ILFWHRRDLRTSDNTGLGVAREKTKKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 69
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ P +P L + + + + D EP+ ++RD+++ + IE
Sbjct: 70 LYSQAGSQLLILHDNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTRGIET 129
Query: 137 IARVSHTLYDLDQL--KPDS 154
+ + + DQL PD+
Sbjct: 130 LEK------NWDQLLHSPDT 143
>gi|403349181|gb|EJY74032.1| putative bacterial cryptochrome [Oxytricha trifallax]
Length = 593
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFR---CVFILDPWFA-------GSSNVG 60
N+ + ++ WFR LR+HDN + +K + VF DP F G+ G
Sbjct: 67 NNKMQRIILWFRNDLRLHDNAIINYAVKHSAPNKQIVPVFCYDPRFHAKKVQQFGTQKCG 126
Query: 61 INKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKV 120
+ + RFL++ +E+ NL K+ S+L V +P + +PKL + + ++++
Sbjct: 127 LVRQRFLIETVENFRHNLEKMGSKLLVSMERPEEFIPKLIDQECDNTIVYQDEICSEEMA 186
Query: 121 RDQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ + C+ N++ ++Y +D L
Sbjct: 187 VERAVQKSCKGANVKTFW--GSSVYHVDDL 214
>gi|357403751|ref|YP_004915675.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
gi|351716416|emb|CCE22076.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
Length = 453
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN-KWRFLLQCLED 73
K ++ R+ +R+ DN +L E L+ + FI DP+ +F+LQ L+D
Sbjct: 5 KKSLYIVRRDMRIDDNTALNEALRLSEQVQACFIFDPYQIDEHPYQSRPALQFMLQSLDD 64
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTC----LTFEEDPEPFGKVRDQNIMTLC 129
L R+ + L ++RG+P K+ K+W C + D PF + RD + +C
Sbjct: 65 LREQFRERGACLTIVRGEPE----KIVKDWVLACGIEAVFVNRDYTPFSRHRDYRLQQVC 120
Query: 130 RELNI 134
EL+I
Sbjct: 121 IELDI 125
>gi|333916551|ref|YP_004490283.1| deoxyribodipyrimidine photo-lyase [Delftia sp. Cs1-4]
gi|333746751|gb|AEF91928.1| Deoxyribodipyrimidine photo-lyase [Delftia sp. Cs1-4]
Length = 493
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ D+ +L L+ C CVFI D + F+ Q L LD LR
Sbjct: 11 WLRRDLRLADHAALYHALRQCRQVHCVFIFDDDILAPLPRADRRVEFICQSLSGLDDALR 70
Query: 80 KLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ + R L V RG+PA+ +P L ++ + D EP RD +
Sbjct: 71 EASGRADTGLIVRRGRPAEQIPDLARQLGAQAVFCNWDDEPDALARDARV 120
>gi|434400657|ref|YP_007134661.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
gi|428271754|gb|AFZ37695.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
Length = 475
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LD +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRLTDNVGLAAARQQSSKIVGVFCLDENLLTKDDVAPARVTYMIGCLQQLQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ ++ S+L +I+G+P +P+L + + + + D EP+ K RDQ + E IEV
Sbjct: 65 SYQQAGSQLLIIKGKPTQTIPQLAETLQAKTVFWNWDVEPYAKARDQKVKAALTEKGIEV 124
>gi|344942901|ref|ZP_08782188.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
gi|344260188|gb|EGW20460.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
Length = 453
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPW----FAGSSNVGINKWRFLLQCLEDLDI 76
FR+ LR+ DN +L E L+ FI DP S G+ +F+LQ ++DL
Sbjct: 11 FRRDLRLQDNTALLEALRLSGQVIPCFIFDPRQIEPHPYQSKPGL---QFMLQSIQDLQQ 67
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+ +L + P ++ +L ++ + + D PF + RD + +C++L I +
Sbjct: 68 QLQSAGGKLALYHALPEQVVRQLVEQQQIQAVFINRDYTPFSRRRDDELAAVCKQLGIAL 127
Query: 137 IARVSHTLYD 146
HTL D
Sbjct: 128 -----HTLPD 132
>gi|456062579|ref|YP_007501549.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455439876|gb|AGG32814.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 496
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLLQC 70
W R+ LR++DN +L L FI D A + + F+ Q
Sbjct: 7 WLRRDLRLYDNAALHHALTNNAQVWMTFIFDTEILEPLKVDDQASGALTHDRRVDFIWQG 66
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L+ +D LRK L V G+P +PK+ K + D EP RD ++ TL
Sbjct: 67 LQQIDAQLRKQGGGLIVQFGKPTTCIPKIAKTLGVNTVYTNHDYEPSAIARDNSVATLLE 126
Query: 131 ELNIE 135
+L I+
Sbjct: 127 KLGID 131
>gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
Length = 436
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN L + LKG +FI D + + F+ + LE +
Sbjct: 7 IFWFRRDLRLEDNVGLYQALKGDYPVLPIFIFDKEILENLPKDDARVSFIFEQLESMRNT 66
Query: 78 LR-KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+ ++ S L + G P +I L K+++ + D EP+ RD I ++ ++
Sbjct: 67 LQEEVESSLAIYHGTPQEIFKSLIKDYEVQAVYTNHDYEPYATERDTKIQDYLKDKQVDF 126
Query: 137 IARVSHTLYDL-DQLKPD 153
+ +++ D LK D
Sbjct: 127 HSYKDQVIFEKGDVLKDD 144
>gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
Length = 431
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
+ +K WFR+ LR+ DN L L+ +FI D + + F+ L
Sbjct: 2 TKQKVSFFWFRRDLRLEDNTGLFHALQSDLPVIPLFIFDEDILDNLPKNDARVSFIYDSL 61
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
+ ++ L S + + +G+ + L E+ + F +D EPF RD I +L +E
Sbjct: 62 QKINNELNTFESSILIKKGKTTAVWKSLLSEFDIQNVFFNKDYEPFAIKRDTAICSLLKE 121
Query: 132 LNIEVIARVSHTLYDLDQL 150
N+E + H +++ ++
Sbjct: 122 NNVECFSFKDHVIFEEKEI 140
>gi|408673564|ref|YP_006873312.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
gi|387855188|gb|AFK03285.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
Length = 475
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD-------PWFAGSSNVGINKWRFL 67
++++ WFR LR+HDN +L + K V+I D P G G + +FL
Sbjct: 2 QNILFWFRNDLRLHDNEALIQATKAGNVIP-VYIFDERQFINTP--LGFKRTGTFRAKFL 58
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
++ +E+L NL+K+ S L V G+P +IL +L ++++ + ++ + + N+
Sbjct: 59 IEAVENLRDNLQKIGSNLIVKVGKPEEILAQLAEKYEAVAVYASKEVTQEETIIEANLSK 118
Query: 128 LCRELNIEVIARVSHTLY 145
+ LNIE+ TLY
Sbjct: 119 KLKPLNIEIELVWIATLY 136
>gi|443318941|ref|ZP_21048182.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
gi|442781475|gb|ELR91574.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
Length = 494
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFLLQCLEDL 74
W R LR+HD+ L+ LK V+ LDP G ++ G K +FLL+ L DL
Sbjct: 6 WLRNDLRLHDHAPLQAALKTGAQVIPVYCLDPRQFGQTDFGFPKTGAFRAQFLLEALADL 65
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP 116
+LR+L L V +G P +LP L +E K + + + P
Sbjct: 66 RQSLRRLGGDLVVRQGFPEQVLPALAREVKCDRVYWHREVTP 107
>gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 439
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFIL---DPWFAGSSNVGINKWRFLLQ 69
T +H+ HWF++ LR+ DNP+L + T CV+++ PW + +G + RFL +
Sbjct: 6 TIRHL-HWFQRDLRLADNPALSSHV-AADTLLCVYLMPKTGPW-CNVTGMGPQRDRFLRE 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L+ L L +L L V+ G P +LP L + T ++ P G L
Sbjct: 63 SLQALRDELNRLGQDLLVLEGSPELVLPDLVSRFDITEVSACTAP---GYYERLTYERLQ 119
Query: 130 RELNIEVIARVSHTLYDLDQL 150
R L + +TL+ DQL
Sbjct: 120 RRLGVPFELHRGNTLFTEDQL 140
>gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
Length = 437
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLE 72
E+ + WFR+ LR+ DN +L E L+ + VFI D + + F+ + L
Sbjct: 5 ERPCIFWFRRDLRLQDNHALYEALRSGYKVQPVFIFDTAILSKLEDRDDARVSFIHRELR 64
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
++ L + +S + +P ++ KE+ + F D EP+ + RD+ I R+
Sbjct: 65 AINKQLEQQSSGIAFYHDEPNKAWEEIVKEFDPIAVYFNHDYEPYARKRDKEISDFLRQY 124
Query: 133 NIEVIARVSHTLYDLDQL 150
+I V +++ +++
Sbjct: 125 HIAVYTFKDQVIFEKEEV 142
>gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
Length = 441
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILD-PWFAGSSNVGIN-----KWRFLLQCLED 73
WF LR+ DN +L + C C F++D WF G+ G+N +WR++ Q + D
Sbjct: 11 WFNLDLRLIDNLTLIRAAEQCQQLVCCFVIDESWFKGN-RYGLNGISQPRWRYIQQAIAD 69
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L +L++ +L + +GQP + L + + +DP + + R TL +
Sbjct: 70 LAASLQQHGQQLIIRKGQPTTEISTLISTLEVDAVYCSDDPGVYERRR---WDTLVKRFP 126
Query: 134 IEVIARVS-HTL 144
RVS HTL
Sbjct: 127 YITFERVSNHTL 138
>gi|434391947|ref|YP_007126894.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
gi|428263788|gb|AFZ29734.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
Length = 479
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L K VF LDP +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRIADNTGLVAARKQSQKVVGVFCLDPNILERDDVAAVRVTYMIGCLQALQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ S+L ++ P +P+L + + D EP+ + RD+ I+ +E I+
Sbjct: 65 RYTEVGSQLLILHDNPTQAIPRLAAALNAQAVFWNWDVEPYSQERDRTIIEALKEKGIQF 124
Query: 137 I 137
+
Sbjct: 125 L 125
>gi|186682403|ref|YP_001865599.1| DNA photolyase [Nostoc punctiforme PCC 73102]
gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 481
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNTGLAAAKRRSPKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ S+L ++ P +P L + + + D EP+ + RD+ I+ +E IE
Sbjct: 65 RYAQVGSQLLILHADPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEKGIEF 124
Query: 137 I 137
+
Sbjct: 125 L 125
>gi|359456434|ref|ZP_09245595.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20495]
gi|358046549|dbj|GAA81844.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20495]
Length = 436
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSN----VGINKWRFLLQ 69
K +++W + LR+ DNP L E G VF+++P WF ++ G++K +FL+Q
Sbjct: 3 KRILYWLQNDLRIDDNPILSELATGQCALDIVFVINPHWFKNNNYQQKPYGVHKHQFLMQ 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL- 128
L +L L + L V+ G+P +L E + + E FG + I L
Sbjct: 63 SLYELQQTLIERGQTLHVLEGEPVSLLKARINEQNIHEVVYSEQ---FGLYEQRQINLLK 119
Query: 129 --CRELNIEVIARVSHTLYDLDQLKPD 153
C+ NIE + TL+ L D
Sbjct: 120 AHCQ--NIEFTGVLQDTLFKQSDLPFD 144
>gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
Length = 435
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
T+K V WFR+ LR+ DN + L G +FI D + F+ L+
Sbjct: 2 TDKVNVFWFRRDLRLDDNLGFFKALHGKYPVLPIFIFDSEILNELPKDDARVTFIFNTLQ 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+ L++ S L + +G+P DI +L K++ + D E + + RD+ I T +
Sbjct: 62 KMRDALQEKGSSLAMYQGKPLDIYKQLIKDFDVQNVITNHDYEVYAQDRDEEIKTFLAQK 121
Query: 133 NIEVIARVSHTLYDLDQLKPDS 154
+I+ +++ +++ D+
Sbjct: 122 DIDFYTFKDQVIFEKNEVVKDN 143
>gi|392415860|ref|YP_006452465.1| deoxyribodipyrimidine photolyase [Mycobacterium chubuense NBB4]
gi|390615636|gb|AFM16786.1| deoxyribodipyrimidine photolyase [Mycobacterium chubuense NBB4]
Length = 446
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 17 MVHWFRKGLRMHDNPSLREGL----KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
V WFR+ LR+ D+P+L G C ++LDP S+ G + ++L L
Sbjct: 3 AVLWFRRDLRLCDHPALLAAADVDGAGTDVLAC-YVLDPRLEASA--GPRRLQYLYDALR 59
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DLD L RL V RG+P +P + K + + D PFG+ RD +
Sbjct: 60 DLD---SALGGRLLVTRGEPKRRIPAVAKAVGASSVHVSGDFTPFGRRRDDQVRDALG-- 114
Query: 133 NIEVIARVSHTL 144
++E++A S L
Sbjct: 115 DVELVATGSPYL 126
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 65/139 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + +F LD +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNIGLATARQQSAKVVGIFCLDRNILNRDDVAPARVTYMIGCLQKLSS 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R+L S+L +I+ P+ +PKL + + D EP+ K RD ++ ++ I+V
Sbjct: 65 RYRELGSQLLIIQDDPSLGIPKLAIAINAKAVFWNRDVEPYAKQRDLSVSNALQQAGIKV 124
Query: 137 IARVSHTLYDLDQLKPDSR 155
L+ D+++ ++
Sbjct: 125 QNFWDQVLHAPDEIRSGTK 143
>gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa]
gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK- 63
S P+N T + + WFR LR+HDN L + V+ DP G S+ G +K
Sbjct: 114 SDPSNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKT 173
Query: 64 ----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
FL++ + DL NL+ S L V G+P +L +L K + D
Sbjct: 174 GPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHRD 227
>gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
Length = 436
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 15 KHMVHWFRKGLRMHDNPSLRE-GLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLL 68
K +++W + LR++DNP + L+ C VF+++P WF ++ G NK+ FL+
Sbjct: 3 KRILYWLKNDLRLNDNPIFSKLALQQCA-LDVVFVINPNWFKNTNYQQKQYGENKYTFLM 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +L L L V+ G+P +L + KE + + E FG V +Q + L
Sbjct: 62 QSLYELQQALIARGQTLHVLEGEPVSVLKQRIKEQHIDEVVYSEQ---FG-VYEQREINL 117
Query: 129 CREL--NIEVIARVSHTLYDLDQL 150
+ I+ + TLY ++L
Sbjct: 118 LKAHCPQIQFTGTLQDTLYQQNEL 141
>gi|154250062|ref|YP_001410887.1| deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
Rt17-B1]
gi|154153998|gb|ABS61230.1| Deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
Rt17-B1]
Length = 436
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
++ F++ LR+ DN +L E LK + +F+ + N K F++ L+++
Sbjct: 4 MYLFKRDLRLDDNKALFEALKNSSKIIPIFVFNKTILKEFNAYNQKVGFVVDVLKNIS-- 61
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+K+N L+V G+ +IL LF ++K L + G+ RD+NI +CR+ N++
Sbjct: 62 -KKIN--LYVFHGEDDEILEFLFSKYKPDALYTAQSFSWQGEERDRNIEKVCRKCNVKFH 118
Query: 138 ARVSHTLYDLDQL 150
A + L D ++
Sbjct: 119 AVFDNYLADFRKI 131
>gi|300790232|ref|YP_003770523.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
gi|384153759|ref|YP_005536575.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei S699]
gi|399542111|ref|YP_006554774.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei S699]
gi|299799746|gb|ADJ50121.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
gi|340531913|gb|AEK47118.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei S699]
gi|398322881|gb|AFO81828.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei S699]
Length = 448
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
+ E +V WFR+ LR+ D+ +L E + +++LD A G + FL CL
Sbjct: 2 TREAPVVLWFRRDLRLGDHAALLEASRHSKHVLALYVLDE--ALLKPGGAPREAFLYGCL 59
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
E L+ +L RL ++RG+PA + K K+ + D P+G+ RD ++ E
Sbjct: 60 EKLN---EQLGGRLMLVRGEPAAEVVKAAKKIGAAAVHVSADTGPYGRRRDASVAKALAE 116
Query: 132 LNIEVI 137
NIE +
Sbjct: 117 HNIEWV 122
>gi|452959038|gb|EME64379.1| deoxyribodipyrimidine photo-lyase [Rhodococcus ruber BKS 20-38]
Length = 454
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L +F+LD S G + FL++CL LD +L
Sbjct: 8 WFRRDLRLRDLPTLLSVADSTDRALALFVLDDSLLRPS--GSPRRTFLMRCLRALDEDL- 64
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
RL V G PA ++P L +E + D P+G RD+ +
Sbjct: 65 --GGRLLVTHGDPATVVPALARELDAEAVHVSADHGPYGARRDEAV 108
>gi|415909084|ref|ZP_11553083.1| Deoxyribodipyrimidine photo-lyase [Herbaspirillum frisingense
GSF30]
gi|407762656|gb|EKF71464.1| Deoxyribodipyrimidine photo-lyase [Herbaspirillum frisingense
GSF30]
Length = 214
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV-GINKWR---FLLQCLEDLD 75
WFR+ LR D+ +L L C F+ D + G+ + R FLL + +LD
Sbjct: 10 WFRRDLRHTDHAALYHALSQSAKVWCAFVFDTDILDALKAEGVTRDRRIDFLLASVAELD 69
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
LRK L V+ G A + +L E + + D EP RDQ + ++ +
Sbjct: 70 AALRKAGGGLIVLHGSAAQRITELAAELEVQAVFTNADYEPAAIERDQLVARQLKKQGAQ 129
Query: 136 VIARVSHTLYDLDQL 150
+++ +++ D++
Sbjct: 130 LLSYKDQVIFEKDEV 144
>gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23]
gi|374257344|gb|AEZ01569.1| (6-4)PP photolyase [Metarhizium robertsii]
Length = 566
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 68 LQCLEDLDINLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L C DL ++ KLN S+LFV+R P + PKL K WK T L FE+D + + + RD +
Sbjct: 10 LDCQNDLSSSITKLNPKSKLFVLREAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVV 69
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
+ ++V+ TL+D D++
Sbjct: 70 AKAAKAAGVKVVIHSGRTLWDSDEI 94
>gi|371943699|gb|AEX61527.1| deoxyribodipyrimidine photolyase [Megavirus courdo7]
Length = 150
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV--GINKWRFLLQCLEDLD 75
+H FR+ LR+ DN SL L+ +FI P N N +F+++ L DL+
Sbjct: 9 IHIFRRDLRLEDNTSLLLALQESKYVIPLFIFTPTQVSEKNKLKSSNSIQFMIESLHDLN 68
Query: 76 --INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
IN +L+ G D++ ++ K + + +D P+ RD+ I C + N
Sbjct: 69 SQINFLDKKLKLWTTYGDEIDVIDEIHKNINISAIYINDDYTPYSIKRDKKIQNYCDQQN 128
Query: 134 I 134
I
Sbjct: 129 I 129
>gi|426404142|ref|YP_007023113.1| deoxyribodipyrimidine photo-lyase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860810|gb|AFY01846.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 435
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 1/142 (0%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLED 73
K V WFR+ LR+ DN L LK + +FI D + + F+ ++D
Sbjct: 3 KVTVFWFRRDLRLDDNAGLYHALKERSAVLPLFIFDSEILEKLEDPADARVTFIYDQIQD 62
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
+ L+ S L V G+P ++L L E + + D EP RD+ + +
Sbjct: 63 IKQQLKTKKSDLLVRHGKPLEVLKALSTEMEIEAIYANHDYEPAACKRDEKVAAWAAKAG 122
Query: 134 IEVIARVSHTLYDLDQLKPDSR 155
IE + L++ D++ ++R
Sbjct: 123 IEFLTFKDQCLFEKDEILTEAR 144
>gi|449015791|dbj|BAM79193.1| probable photolyase/blue-light receptor [Cyanidioschyzon merolae
strain 10D]
Length = 438
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+ DNP+L L+ + V+ DP G ++ G K +FL++ + DL
Sbjct: 105 WFRSDLRLDDNPALCAALEEGASVLPVYCFDPRQFGKTSFGFEKTGRYRAKFLIESVADL 164
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
L+K + L + G+P +++P L ++++ + + ++ ++ + ++ +
Sbjct: 165 RKALKKKGNNLLIRIGKPEEVIPDLCRKYEIKKVFYHQEVTYEELECEEAVARKLEDMKV 224
Query: 135 EVIARVSHTLYDLDQL 150
EV ++TLY ++ L
Sbjct: 225 EVHPFWTNTLYAVEDL 240
>gi|404450628|ref|ZP_11015608.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
gi|403763683|gb|EJZ24627.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
Length = 432
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLE 72
E+ + WFR+ LR+ DN L + +FI D + + F+ ++
Sbjct: 2 EQISIFWFRRDLRLEDNTGLYYAFEQEENVLPLFIFDRNILDDLEDKKDARVEFIHDQIQ 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+ L+ S + V G+P DI +L +E+ + D EP+ K RD + L +E
Sbjct: 62 KISNGLKDFESSILVKYGKPLDIWQELLEEYDIQNVYTNRDYEPYAKERDTQVKKLLKER 121
Query: 133 NIEVIARVSHTLYDLDQL 150
NI+ + +++ D++
Sbjct: 122 NIQFLDFKDQVIFEKDEI 139
>gi|374619112|ref|ZP_09691646.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
gi|374302339|gb|EHQ56523.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
Length = 434
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFIL---DPWFAGSSNVGINKWRFLLQCLEDL 74
+HWFR LR++DNP+L + C++++ PW + +G + RFL + L +L
Sbjct: 4 LHWFRTDLRLNDNPAL-ASHAAAESLLCLYLMPKPKPW-CNLTGIGDQRDRFLRESLIEL 61
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+L+ L L V+ G P ++P L + + T ++ + P G Q++ L +L I
Sbjct: 62 KRDLQDLGQDLLVLEGSPELVIPHLVERYGITEISVSDHP---GWEEKQSLSYLAGKLPI 118
Query: 135 EVIARVSHTLY 145
+ ++L+
Sbjct: 119 PIQIHRGNSLF 129
>gi|452949001|gb|EME54472.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis decaplanina DSM
44594]
Length = 449
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
+ E +V WFR+ LR+ D+ +L E K +++LD S G + FL CL
Sbjct: 2 TREAPVVLWFRRDLRLGDHAALLEASKHSKHVLALYVLDDALLKPS--GAPRVAFLHGCL 59
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
+ LD +L RL +++G P + + K +E + D P+G+ RD + E
Sbjct: 60 KALD---DQLGGRLMLVKGDPVEEVVKAAREIGAATVHVSSDTGPYGRRRDDEVKKALAE 116
Query: 132 LNIEVI 137
+I +
Sbjct: 117 HDIAWV 122
>gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
Length = 450
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCT----TFRCVFILDP--WFAGSSNVGINKWRFLLQCL 71
VHWFR+ LR+ DNP+L ++ +F++DP W A + + +L + L
Sbjct: 4 VHWFRRDLRLADNPALVAAVEAARRADDAVVPLFVVDPGLWTAAAGP----RVAYLARSL 59
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
LD L+ RL V G+P D++P + +E + + EP+G+ RD + +
Sbjct: 60 RALDA---ALDGRLVVRHGRPQDVVPAVAREVEAPTVHVTAATEPYGRRRDDAVAQALGD 116
Query: 132 LNI 134
+ +
Sbjct: 117 VPL 119
>gi|357409762|ref|YP_004921498.1| deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
33331]
gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
33331]
Length = 459
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HD+P L L +F+LDP + N+ FL CL DLD LR
Sbjct: 8 FTSDLRLHDHPPLHAALASSDEVVPLFVLDPGVEAAGFAAPNRRAFLADCLRDLDSGLRD 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
RL V G+ A+ + ++ E + + + + R++ +
Sbjct: 68 RGGRLVVREGEVAEEVRRIVSETEAGVVHMAAGISGYAQRREERL 112
>gi|392555103|ref|ZP_10302240.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas undina NCIMB
2128]
Length = 436
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLL 68
+K +++W + LR+ DNP L + + VF+++P WF ++ G++K RFL+
Sbjct: 2 KKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNNYQQKTYGVHKQRFLM 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +L ++ +L L +I G P ++L + E + + + G + I L
Sbjct: 62 QSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQ---IGVYEQRQISAL 118
Query: 129 CRELNIEVIARVSH-TLYDLDQL 150
+ V V TLY QL
Sbjct: 119 KSKCTTVVFKSVMQDTLYQQQQL 141
>gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
Length = 438
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-WRFLLQCLEDLDINL 78
W R+ LR+HDN +L LK VFI D + + +++ FL+Q + L L
Sbjct: 9 WLRRDLRLHDNAALYYALKSGRPVIPVFIFDRVILDALDDRLDRRVEFLVQEVNRLHDEL 68
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
KL S + V G+P D+ +L + + + D E + K RD+ I L E I
Sbjct: 69 AKLGSTIIVRYGKPVDVWKELIETYTIGDVFTNHDYEGYAKERDKAIGELLAERGIGFHT 128
Query: 139 RVSHTLYDLDQL 150
+++ D++
Sbjct: 129 SKDQAIFERDEV 140
>gi|434388808|ref|YP_007099419.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
gi|428019798|gb|AFY95892.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
Length = 503
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFL 67
T K ++ W+R LR+HD+ L + LK + + D G ++ G K +FL
Sbjct: 2 TTKRILIWYRNDLRLHDHQPLTQALKDGASIIPFYCFDDRQFGQTSFGFPKTGGFRAQFL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ + D + R L S L + RG +I+P+L + T + + ++ P +
Sbjct: 62 LESVADFQHSYRSLGSELIIRRGLTEEIIPQLVEPLGITDVYYHQEVTPEEIAVSTALEA 121
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
+ +N+ + HTL+ L L
Sbjct: 122 ALKAVNVNCRSFWGHTLHLLQDL 144
>gi|443310722|ref|ZP_21040364.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
gi|442779247|gb|ELR89498.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
Length = 476
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRLSDNTGLAIAREHSQKVVGVFCLDPNILERDDVAPVRVTYMMGCLQHLQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ S L +I+G P +P L + + + D EP+ + RD+ ++ + IE
Sbjct: 65 RYTEVGSELLIIKGNPTQAIPALAEILNARGVFWNWDVEPYSQTRDRAVIDALQAKGIEF 124
Query: 137 IAR 139
I +
Sbjct: 125 IEK 127
>gi|356507809|ref|XP_003522656.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Glycine max]
Length = 549
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKW 64
S + + WFR LR+ DN +L + T V+ +DP + G G +
Sbjct: 51 GSGKGTAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRA 110
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
+FLL+CL DL NL K L V G+P +ILP L K ++ + +++
Sbjct: 111 QFLLECLADLRKNLMKRGLNLLVQHGKPEEILPSLAKSFQAHTVYAQKE----------- 159
Query: 125 IMTLCRELNIE 135
T ELN+E
Sbjct: 160 --TCSEELNVE 168
>gi|359436511|ref|ZP_09226610.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20311]
gi|358028804|dbj|GAA62859.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20311]
Length = 436
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV-----GINKWRFLL 68
+K +++W + LR+ DNP L + + VF+++P + S+N G++K RFL+
Sbjct: 2 KKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNNYQQKPYGVHKQRFLM 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +L ++ +L L +I G P ++L + E + + + G + I L
Sbjct: 62 QSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQ---IGVYEQRQISAL 118
Query: 129 CRELNIEVIARVSH-TLYDLDQL 150
+ V V TLY QL
Sbjct: 119 KSKCTTVVFKSVMQDTLYQQQQL 141
>gi|443927307|gb|ELU45814.1| cryptochrome-2 [Rhizoctonia solani AG-1 IA]
Length = 572
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 44/131 (33%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++HWFR LR HD P+LR GL L P + S VG+N++ FL++ + DL
Sbjct: 11 VLHWFRTDLRTHDAPALRAGL----------ALKPEY--SHRVGVNRFNFLIESMNDLSQ 58
Query: 77 NLRKLN--SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+L +LN S+L VIR RD+ + + + +
Sbjct: 59 SLTRLNNKSKLLVIR------------------------------ERDKRVREIAIKSKV 88
Query: 135 EVIARVSHTLY 145
EVI + H+LY
Sbjct: 89 EVIDVLGHSLY 99
>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
Length = 428
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN L L +FI D + F+ + LE +
Sbjct: 3 IFWFRRDLRLEDNVGLFHALNSTEDVLPIFIFDSEILSQLPKDDARVSFIHEQLEKIQSE 62
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L K+ L V G+P +I +L E T + D EP+ + RD+ + L I +
Sbjct: 63 LNKIGKSLAVFHGKPIEIFTQLISENTITSVYTNHDYEPYARKRDKEMNQLFTTNGISFL 122
Query: 138 ARVSHTLYDLDQLKPD 153
+++ ++ D
Sbjct: 123 TSKDQVIFEKSEVVKD 138
>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK--- 63
P N + + WFR LR+HDN +L + + V+ DP G S+ G +K
Sbjct: 170 PANGCGLRRASIVWFRNDLRVHDNEALVSANRDSLSILPVYCFDPKDYGKSSSGFDKTGP 229
Query: 64 WR--FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
+R FLL+C+ +L +LR+ S L V G P +L L K L ++
Sbjct: 230 YRANFLLECVANLRSSLRERGSDLIVRVGSPEAVLVDLAKSVGAEALYVHQEVTYEELQA 289
Query: 122 DQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ + +E IE TL+ L+ L
Sbjct: 290 EEKVAAALQEKGIETKYFWGSTLFHLEDL 318
>gi|448565168|ref|ZP_21636139.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
gi|445715827|gb|ELZ67580.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
Length = 151
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW------FAGSSN-----VGI 61
+E + WFR+ LR+HDN +L V+ LDP F GS + G
Sbjct: 2 SESTSLAWFRRDLRLHDNEALAAACDADGVL-PVYCLDPREYGDRPFGGSDSFDFDKTGA 60
Query: 62 NKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP 116
++ RF L+ L DL +LR S L V G P +LP+L +T P P
Sbjct: 61 HRARFRLESLSDLRASLRDRGSDLVVREGTPESVLPELAATVDADFVTVHTRPTP 115
>gi|333918528|ref|YP_004492109.1| deoxyribodipyrimidine photolyase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480749|gb|AEF39309.1| Deoxyribodipyrimidine photolyase [Amycolicicoccus subflavus
DQS3-9A1]
Length = 458
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 6 TPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR 65
+ T + ++ + WFR+ LR D P+ VF+LDP S G+ +
Sbjct: 4 SATRRETVAENTIVWFRRDLRTADMPTFLAAAASAERSIGVFVLDPVLLKPS--GVRRRD 61
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L CL +LD KL RL VI G P +PKL + D P+G +RD I
Sbjct: 62 ALYACLRELD---EKLGGRLLVISGNPVVEIPKLAALTGAKQVHVSADFGPYGALRDARI 118
>gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
KD131]
gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
KD131]
Length = 471
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ WFR+ LR+ DNP L E +FILDP + KWR L +E
Sbjct: 7 LILWFRRDLRLADNPMLAEAAATGRPLIPLFILDP--ETEALGAAPKWRLGLG-VEAFAR 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L L SRL + RG +L L E + + EP + RD+ + R+ IE
Sbjct: 64 ALEGLGSRLVLRRGPALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 123
Query: 137 IARVSHTLYD 146
+ HT+++
Sbjct: 124 ASHAGHTIFE 133
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 60/120 (50%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LD ++ + ++++ CL++L
Sbjct: 5 ILFWHRRDLRLTDNLGLAAAKEQTVKVVGVFCLDRDILTRDDIAPARVKYMMGCLQELSQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ ++ S+L + +G P+ ++P+L + + D EP+ + RD+ + ++ +I V
Sbjct: 65 SYGQIGSQLLITQGTPSQVIPQLASTLSAKAVYWNLDVEPYARKRDREVTIALQDKDITV 124
>gi|429207044|ref|ZP_19198304.1| Deoxyribodipyrimidine photolyase [Rhodobacter sp. AKP1]
gi|428190039|gb|EKX58591.1| Deoxyribodipyrimidine photolyase [Rhodobacter sp. AKP1]
Length = 470
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ WFR+ LR+ DNP L E +FILDP + KWR L +E
Sbjct: 6 LILWFRRDLRLADNPMLAEAAATGRPLIPLFILDP--ETEALGAAPKWRLGLG-VEAFAR 62
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L L SRL + RG +L L E + + EP + RD+ + R+ IE
Sbjct: 63 ALEGLGSRLVLRRGPALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 122
Query: 137 IARVSHTLYD 146
+ HT+++
Sbjct: 123 ASHAGHTIFE 132
>gi|377560115|ref|ZP_09789639.1| deoxyribodipyrimidine photo-lyase [Gordonia otitidis NBRC 100426]
gi|377522717|dbj|GAB34804.1| deoxyribodipyrimidine photo-lyase [Gordonia otitidis NBRC 100426]
Length = 427
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 22 RKGLRMHDNPSLREGL-KGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
R+ LR++D P+L E + G F+LDP SS G + FL L +LD K
Sbjct: 2 RRDLRLNDLPALGEAIGDGKRQVLVCFVLDPRLEKSS--GERRLAFLYDSLRELDA---K 56
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
L+ L V+RG+P + +P+L + ED PFG+ RD +
Sbjct: 57 LDGNLLVVRGRPDEEIPRLVDAVSAESVHVSEDFSPFGRRRDDAVA 102
>gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
Length = 471
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ WFR+ LR+ DNP L E +FILDP + KWR L +E
Sbjct: 7 LILWFRRDLRLADNPMLAEAAATGRPLIPLFILDP--ETEALGAAPKWRLGLG-VEAFAR 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L L SRL + RG +L L E + + EP + RD+ + R+ IE
Sbjct: 64 ALEGLGSRLVLRRGPALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 123
Query: 137 IARVSHTLYD 146
+ HT+++
Sbjct: 124 ASHAGHTIFE 133
>gi|427730047|ref|YP_007076284.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
gi|427365966|gb|AFY48687.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
Length = 479
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 58/123 (47%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LD +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRIADNTGLALAREQSPQVVGVFCLDSNILERDDVAPARVTYMMGCLQALQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ G+P +P L + + + + D EP+ ++RD+ IM + IE
Sbjct: 65 RYAQAGSQLLILHGEPVQAIPHLAETLQAKAVFWNWDVEPYSQIRDRAIMESLKAKGIEF 124
Query: 137 IAR 139
+ +
Sbjct: 125 LTQ 127
>gi|29827753|ref|NP_822387.1| deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680]
gi|29604854|dbj|BAC68922.1| putative deoxyribodipyrimidine photolyase [Streptomyces avermitilis
MA-4680]
Length = 457
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HD+P LR L G +F+ D G+ N+ FL CL DLD LR+
Sbjct: 8 FTSDLRLHDHPPLRAALDGARQVVPLFVRDRAVDGAGFAAPNRLAFLADCLRDLDAGLRE 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
RL + G D + K+ E + + R+Q + +
Sbjct: 68 RGGRLVLRSGDVVDQVCKVAAEADADEVHLAAGVSAYAHRREQRLRS 114
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFL 67
T K ++ W+R LR+HDN + + LK V+ D + G G + +FL
Sbjct: 2 TSKRILIWYRNDLRIHDNKLIYQALKEKAQIIPVYCFDKRQFVQTYFGFPKTGKFRAQFL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
+ + DL +L+KL S L V G P I+P L +E + + E+ ++++
Sbjct: 62 RESVADLRNSLQKLGSNLIVRLGFPEKIIPALAQELNIDAVYYHEEVTSEELAVEKSLKK 121
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
++ ++V + TLY D L
Sbjct: 122 ALSQIGVKVNSFWGATLYHPDNL 144
>gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
Length = 479
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 58/123 (47%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR DN L + VF LDP G ++ + +++ CL+ L+
Sbjct: 5 ILFWHRRDLRTSDNTGLGVAREKTKKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ P +P L + + + + D EP+ ++RD+++ + IE
Sbjct: 65 LYLQAGSQLLILHDNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTRGIET 124
Query: 137 IAR 139
+ +
Sbjct: 125 LEK 127
>gi|408675634|ref|YP_006875382.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
gi|387857258|gb|AFK05355.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
Length = 437
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 1/140 (0%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQC 70
+ EK + WFR+ LR++DN L L+ +FI D N + F+
Sbjct: 2 TKEKIAIFWFRRDLRLNDNAGLYHALRSGYKVLPIFIFDTNILNKLENKQDQRVEFIHHA 61
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L +L +L KL S + + +G+P +I + +E++ + D E + RD+ + L
Sbjct: 62 LSELQRSLSKLQSSILIKKGEPIEIWKLISEEYEIAEVYTNHDYEKYAIERDKQVGELLN 121
Query: 131 ELNIEVIARVSHTLYDLDQL 150
I T+++ +++
Sbjct: 122 SKGIAFYTFKDQTIFEKNEV 141
>gi|338210188|ref|YP_004654235.1| DASH family cryptochrome [Runella slithyformis DSM 19594]
gi|336304001|gb|AEI47103.1| cryptochrome, DASH family [Runella slithyformis DSM 19594]
Length = 479
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKW-----RFLL 68
K +++WFR LR+HDN + ++ +++ D F ++GI K +FLL
Sbjct: 3 KRIIYWFRNDLRLHDNEGFLKAIQDADEVIPIYVFDTRQFEEIGSLGIPKTGTFRAKFLL 62
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL 108
+ +++L NLRK + L + G+P ++ +L +EW T +
Sbjct: 63 ESVQNLRDNLRKKGANLVIKLGKPEIVISELAREWDVTAI 102
>gi|337755263|ref|YP_004647774.1| deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
gi|336446868|gb|AEI36174.1| Deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
Length = 468
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++K +HWFR+ LR+ DNP+L + + T +FILD + +G +L L
Sbjct: 2 SKKIAIHWFRQDLRLADNPALHQASQADETI-TIFILDE----NQEIGGASKLWLHHSLN 56
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L+ + L++RL RG P I+ KL KE T + + + RD I +E
Sbjct: 57 SLN---KSLDNRLHFFRGNPLKIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFLQEQ 113
Query: 133 NIEV 136
+I +
Sbjct: 114 DINI 117
>gi|434387598|ref|YP_007098209.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018588|gb|AFY94682.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 478
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ D+ L + VF D + +V + +L+ CL+ L
Sbjct: 5 ILFWHRRDLRVSDSIGLAQACNTNARVIGVFCFDRAILTNDSVAPARVTYLVGCLQSLAK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ R+ S+L + G P +P L K + + D EP+ + RD++I T + IEV
Sbjct: 65 DYRRAGSQLLFVEGNPVVKIPLLATTLKAQAVYWHLDIEPYSQTRDESIATTLKSDGIEV 124
Query: 137 IARVSHTLYD 146
HT +D
Sbjct: 125 -----HTNWD 129
>gi|383322099|ref|YP_005382952.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325268|ref|YP_005386121.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491152|ref|YP_005408828.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436419|ref|YP_005651143.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|97048023|sp|P77967.2|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|339273451|dbj|BAK49938.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|359271418|dbj|BAL28937.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274588|dbj|BAL32106.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277758|dbj|BAL35275.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958277|dbj|BAM51517.1| DNA photolyase [Bacillus subtilis BEST7613]
Length = 489
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HD+ L LK V+ DP ++ G K WR FL Q +++L
Sbjct: 11 WFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNL 70
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+L+K+ ++L V G P ++P++ K+ + + + ++N++ L I
Sbjct: 71 AESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGI 130
Query: 135 EVIARVSHTL 144
E TL
Sbjct: 131 EAKGYWGSTL 140
>gi|443244632|ref|YP_007377857.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
gi|442802031|gb|AGC77836.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
Length = 440
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++K V WFR+ LR+ DN E LK +FI D + F+ + L+
Sbjct: 2 SKKVNVFWFRRDLRLDDNVGFYEALKSDLPVLPIFIFDKEILDKLPEDDARVSFIYEELQ 61
Query: 73 DLDINLRK-LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
+ L++ +S L + G+P +I ++ + + D EP+ K RD+ I L E
Sbjct: 62 RMRSQLQQDQDSSLAMYYGKPQEIWKEIISSYDVDTVFTNRDYEPYAKERDEEIDQLLAE 121
Query: 132 LNIEVIARVSHTLYDLDQL 150
NI+ +Y+ D++
Sbjct: 122 HNIDFKTFKDQVIYEKDEV 140
>gi|443474143|ref|ZP_21064164.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
gi|442905078|gb|ELS29993.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
Length = 472
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA----GSSNVGINKWRFLLQCLEDL 74
W ++ LR+ D+P+L ++ +F+LDP W G +G+++ RFLL+ L L
Sbjct: 7 WLKQDLRLDDHPALHAAIQA-DRLLPLFVLDPQWLRPSPLGPRRLGVHRARFLLESLAAL 65
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF 117
D LR+ SRL V++G ++P L + + E+ PF
Sbjct: 66 DAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEVLTLEEVAPF 108
>gi|363539927|ref|YP_004894453.1| mg402 gene product [Megavirus chiliensis]
gi|350611092|gb|AEQ32536.1| deoxyribodipyrimidine photolyase [Megavirus chiliensis]
Length = 152
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV--GINKWRFLLQCLEDLD 75
+H FR+ LR+ DN SL L+ +FI P N N +F+++ L DL+
Sbjct: 9 IHIFRRDLRLEDNTSLLLALQESKYVIPLFIFTPTQVSEKNKLKSSNSIQFMIESLYDLN 68
Query: 76 --INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
IN +L+ G D++ ++ K + + +D P+ RD+ I C + N
Sbjct: 69 SQINFLDKKLKLWTTYGDEIDVIDEIHKNINISAIYINDDYTPYSIKRDKKIQNYCDQQN 128
Query: 134 I 134
I
Sbjct: 129 I 129
>gi|374632521|ref|ZP_09704895.1| deoxyribodipyrimidine photolyase [Metallosphaera yellowstonensis
MK1]
gi|373526351|gb|EHP71131.1| deoxyribodipyrimidine photolyase [Metallosphaera yellowstonensis
MK1]
Length = 438
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQCLEDLDINLR 79
FR+ LR++DN L + C +F LDP + + F+LQ LE+LD L+
Sbjct: 7 FRRDLRLYDNTGLMLAGEECNEVIPIFFLDPRQVEDNPYLSPRALEFMLQSLENLDEELQ 66
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
L SRL V++ P ++ K+ + + D PF + RD+ + R ++I+
Sbjct: 67 DLGSRLHVVKAIPEALIGKI----QVEAVYLNYDYTPFSRARDEGMKEALRAKGKKLIS 121
>gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
Length = 447
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFLLQCLE 72
V WF LR+ DN +L + C T CV+ILDP + G+ RFL + L
Sbjct: 12 VFWFSNDLRITDNAALNYAAQSCETLICVYILDPRLYAPNRYGLRSMGPMRDRFLQESLA 71
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L ++L + L V+R P + +L ++ + + + + R +
Sbjct: 72 QLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAMLQRRYRLI 131
Query: 133 NIEVIARVSHTLYDLDQLKP 152
+ + IA +HTL++ + L P
Sbjct: 132 SFKDIA--THTLFNDEDLLP 149
>gi|390945121|ref|YP_006408882.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
gi|390418549|gb|AFL86127.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
Length = 433
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLE 72
EK + WFR+ LR+ DN L + +FI D + + +F+ +
Sbjct: 2 EKISIFWFRRDLRLEDNTGLFYAFEQEENVLPLFIFDKNILDKLEDKKDRRVQFIYDQIS 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
++ L+ S + V G P ++ LFKE+ + D EP+ + RDQ+I L ++
Sbjct: 62 NISEQLKDFESSILVKYGYPLEVFQSLFKEYTIQNIYTNRDYEPYAEERDQSIKDLAKKN 121
Query: 133 NIEVIARVSHTLYD 146
N + + +++
Sbjct: 122 NCQFLDFKDQVIFE 135
>gi|395763919|ref|ZP_10444588.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium lividum PAMC
25724]
Length = 487
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 49/113 (43%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
T K + WFR+ LR D+ +L L+ T CVF+ D + + FL L
Sbjct: 2 TIKTTLVWFRRDLRAFDHAALHHALRQSQTVHCVFVYDTAILAALPRRDRRVDFLHASLA 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L LR+L L V+ A+ +P+L E + D EP RD +
Sbjct: 62 ELAAELRQLGGDLIVLHADAAEAIPRLAAELNADAVFANHDYEPQAIARDARV 114
>gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
Length = 492
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN----VGINKWRFLLQCLEDLD 75
W R+ LR+ DN L+ + V++LDP + + + FL++ L +L
Sbjct: 9 WHRRDLRLADNKGLQAAAALGSAVTGVYVLDPAIITPPHHLPPMAPARLWFLVETLRELQ 68
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
R SRL V+ G P +LP+L + L + D EP+ + RD+ +
Sbjct: 69 QRWRDAGSRLIVVAGDPVAVLPRLAALLEAPTLVWSRDVEPYARERDRQV 118
>gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
2.4.1]
gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
2.4.1]
Length = 471
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ WFR+ LR+ DNP L E +FILDP + KWR L +E
Sbjct: 7 LILWFRRDLRLADNPMLAEAAATGRPLIPLFILDP--ETEALGAAPKWRLGLG-VEAFAR 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L L SRL + RG +L L E + + EP + RD+ + R+ IE
Sbjct: 64 ALEGLGSRLVLRRGPALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQAGIEA 123
Query: 137 IARVSHTLYD 146
+ HT+++
Sbjct: 124 ASHAGHTIFE 133
>gi|260220871|emb|CBA28870.1| hypothetical protein Csp_A09300 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 529
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ V WF++ LR HD+ L++ L+ C++ ++P + + F L+CL DL
Sbjct: 18 YSVVWFKRDLRTHDHAPLKQALQSGPVL-CLYCIEPTLWAQPDASTQHYHFALECLRDLW 76
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCL-TFEEDPEPFGKVRDQNIMTLCRELNI 134
+ L++L RL ++ G ++L +L + + + EE RD+ + C+ +
Sbjct: 77 VQLKELGLRLQLVAGDAPEVLARLHAKAPFMAIYSHEETGNDASYARDRAVSRWCKAQGV 136
Query: 135 E 135
+
Sbjct: 137 D 137
>gi|380513692|ref|ZP_09857099.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas sacchari
NCPPB 4393]
Length = 473
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 63/141 (44%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ + WFR+ LR+HD P+L+ L T V++ P G+ G +L + L LD
Sbjct: 3 YAIVWFRRDLRLHDQPALQAALDAGHTPVPVYLHSPEDEGAWAAGAASRSWLQRSLAALD 62
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
LR SRL + +G L ++ + + + EP + RD + RE +E
Sbjct: 63 AQLRARGSRLILRQGPAEAALRQVIADCSAEAVYWNRRYEPATQPRDARLKRELREQGLE 122
Query: 136 VIARVSHTLYDLDQLKPDSRG 156
V + S L++ QL G
Sbjct: 123 VHSHNSALLFEPWQLATQQGG 143
>gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula]
Length = 235
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 2 SPLS----TPTNPNSTE---KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA 54
SPLS P +P+S + + WFR LR+HDN +L + V+ DP
Sbjct: 98 SPLSLIPHRPNDPSSAAALRRTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADY 157
Query: 55 GSSNVGINK-----WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEW-KTTCL 108
G S+ G +K FL++ + DL NL+ S L V G+P +L +L K+ + C+
Sbjct: 158 GKSSSGFDKTGPYRASFLIESISDLRKNLKARGSDLVVRVGKPETVLVELAKKLGRMRCI 217
Query: 109 TFE 111
E
Sbjct: 218 VIE 220
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRC-VFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
+HWFR+ LR+ DN +L VFI D + +FLL CL LD
Sbjct: 3 IHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQFLLDCLAALDA 62
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
LR L V RG P L + +E + +T+ D P+ RD I RE E
Sbjct: 63 ELRTFGLHLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALREAGYEA 122
Query: 137 IARVSHTLYDLDQL 150
+ ++++ ++
Sbjct: 123 HSFKDTVIFEMKEV 136
>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
Length = 432
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLE 72
+K V WFR+ LR+ DN L L+ T +FI D + + F+ ++
Sbjct: 2 KKLSVFWFRRDLRLEDNTGLYYALQQETDVLPLFIFDRTILDDLEDKTDARVSFIHDQIQ 61
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+L L K S L V G P ++ +L K+++ + D EP+ K RD+ I L E
Sbjct: 62 NLKEELEKKGSTLLVKYGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKRDRAIEKLAEEK 121
Query: 133 NIEVIARVSHTLYD 146
I + +++
Sbjct: 122 GISFLTFKDQVIFE 135
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP +V + +++ L++L
Sbjct: 5 VLFWHRRDLRIADNIGLAAARQQSSKVVGVFCLDPNILERDDVAPARVTYMIGSLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ G P +P L + + + D EP+ + RD+ I+ + ++ I+
Sbjct: 65 RYVQAGSQLLILHGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDILKDKGIQF 124
Query: 137 IA-RVSHTLYDLDQLKPDS 154
+ + L+ D+++ S
Sbjct: 125 LTHKWDQILHSPDEIRSGS 143
>gi|407278627|ref|ZP_11107097.1| deoxyribodipyrimidine photo-lyase [Rhodococcus sp. P14]
Length = 454
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L +F+LD S G + FL++CL LD +L
Sbjct: 8 WFRRDLRLRDLPTLLSVADSTDRALALFVLDESLLRPS--GSPRRTFLMRCLRALDEDL- 64
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
RL V G PA ++P L +E + D P+G RD +
Sbjct: 65 --GGRLLVTHGDPATVVPALARELDADAVHVSADRGPYGTRRDDAV 108
>gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.]
Length = 434
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN E LK +FI D + F+ + L+ +
Sbjct: 6 IFWFRRDLRLDDNVGFLEALKSDYPVLPIFIFDKEILDKLPKDDARVTFIYETLQKMRDR 65
Query: 78 LRKLN-SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+ + S L + G+P DI ++ K+++ + D EP+ K RD+ I +L E +I+
Sbjct: 66 LQNDHTSSLALFYGKPIDIWKQILKDYEVKEVYTNRDYEPYAKRRDEEISSLFEEKDIDF 125
Query: 137 IARVSHTLYDLDQL 150
+++ D +
Sbjct: 126 KTFKDQVIFEKDDV 139
>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
Length = 481
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 3 PLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGI- 61
P+ P P K + + LR+HD+P LR ++ +F+ DP G VG
Sbjct: 18 PVRPPAEP--AVKASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDP---GIKKVGFH 72
Query: 62 --NKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKL 99
N+ FL CL DLD LR+ RL V G+PA ++ +L
Sbjct: 73 AANRAAFLADCLGDLDAGLRERGGRLVVRAGEPAQVVREL 112
>gi|389862600|ref|YP_006364840.1| deoxyribodipyrimidine photo-lyase [Modestobacter marinus]
gi|388484803|emb|CCH86343.1| Deoxyribodipyrimidine photo-lyase [Modestobacter marinus]
Length = 456
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 20 WFRKGLRMHDNPSLREGLKGCT---TFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
WFR+ LR+ D+P+L + VF+ D G S G + FLL CL DL
Sbjct: 7 WFRRDLRLGDHPALLAAVDAAGPEGAVLPVFVFDDRLYGPS--GDPRRVFLLDCLADL-- 62
Query: 77 NLRKLNSRLFVIR-GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
R+ V+R G PA +LP+L E + D P+G+ RD +
Sbjct: 63 --REQTGGALVLRTGDPAQVLPQLVAELGAGSVHVSADAGPYGRRRDTAV 110
>gi|229488858|ref|ZP_04382724.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121]
gi|229324362|gb|EEN90117.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121]
Length = 448
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WFR+ LR+ D P+L +F+LD G + G + L L LD
Sbjct: 5 VIWFRRDLRVGDLPTLTAAADAGGQTLGLFVLDEKLLGPA--GSPRQNQLFANLSALD-- 60
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+L+ RL V+RG PAD++P++ + + D P+G+ RD + +E+I
Sbjct: 61 -NQLDGRLMVVRGDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVAE-----KVELI 114
Query: 138 ARVS 141
A S
Sbjct: 115 ATGS 118
>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
Length = 430
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQ 69
K + WF+ LR+ DN ++ + + V+ D ++ G K +FLL+
Sbjct: 3 KTAIVWFKTDLRVEDNETIIKAILQSEQIIPVYCFDDSHFETTKYGFKKTGSFRAQFLLE 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L+DLD NLR + S L + +G+P +PK+ KE+K + + + K ++ +
Sbjct: 63 SLQDLDKNLRAIGSGLVITKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKMVQNEL 122
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+L E+ + TLY + L
Sbjct: 123 FKLRCELETFSTSTLYHAEDL 143
>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 477
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN----VGINKWRFLL 68
T ++ W R+ LR+ DN L V++LDP S + + FL+
Sbjct: 2 TTPRVLFWHRRDLRLTDNLGLAAAAAISPAVTGVYVLDPQVISPSEHLLPMAPARLWFLI 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ L +L R SRL V+ G P +LP+L + + + D EP+ + RD+ +
Sbjct: 62 ESLIELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNRDVEPYARERDRQV 118
>gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
Length = 492
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN----VGINKWRFLL 68
T ++ W R+ LR+ DN L+ V++LDP + + FL+
Sbjct: 2 TASRVLFWHRRDLRLADNLGLQAAEAISPAVTGVYVLDPALIQPPESLPPMAPARLWFLV 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ L +L R + SRL V+ G P +LP+L + + + D EP+ + RD+ +
Sbjct: 62 ESLRELQQRWRDVGSRLLVVAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERDRQV 118
>gi|354568677|ref|ZP_08987840.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
gi|353539931|gb|EHC09411.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
Length = 480
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +V + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNTGLATARQRSAKVVGVFCLDPNILERDDVAPVRVTYMIGCLQALQK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ P +P L + + D EP+ + RD+ I++ +E IE
Sbjct: 65 RYAQAGSQLLILHAHPTQAIPALAVALGAKAVFWNWDVEPYSQERDRTIISALKEKGIEF 124
Query: 137 I 137
+
Sbjct: 125 L 125
>gi|358460135|ref|ZP_09170324.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. CN3]
gi|357076642|gb|EHI86112.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. CN3]
Length = 463
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F + LR+HDNP L +F+ D N+ RFL++CL DLD +LR
Sbjct: 8 FTRDLRVHDNPMLTAATDEAEFVVPLFVRDTGAPRDLFGSGNRERFLVECLADLDRSLRG 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L RL V G P + + +L E + D + + R + T E E+
Sbjct: 68 LGGRLVVREGDPVEQVCRLADEVGAARVHIAADASAYAQRRQTTLRTALAERGREL 123
>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 488
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFLLQCLEDL 74
WFR LR+ D+ L + + ++ LDP G + G K +FLL+ L DL
Sbjct: 6 WFRTDLRLLDHQPLTRACQQGSFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLLESLADL 65
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE----DPEPFGKVRDQNIMTLCR 130
LR S L + +GQP ++P L +EW + E + E + Q + L
Sbjct: 66 RQQLRARGSDLVIRQGQPEQVIPALAREWGVKAVYAHEEVGTEEEAVARALQQALQPLGI 125
Query: 131 ELNIEVIARVSHTLY 145
L++E HTLY
Sbjct: 126 PLHLE----WGHTLY 136
>gi|448729303|ref|ZP_21711620.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445795250|gb|EMA45779.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 485
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFLLQCLE 72
V WFR LR HDN +L + T V+ DP G + G+ K +FL++ +
Sbjct: 6 VVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFGEATFGLAKTGPYRAQFLIESVR 65
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DL +LR+ S LFV +G+P +++ +L E + + P + + ++ E
Sbjct: 66 DLRGSLREAGSDLFVRQGKPENVVSELAAEHGADIVHYHTTPATEERAVEASVTDGLDEH 125
Query: 133 NIEVIARVSHTLYDLDQL 150
I TLY ++ L
Sbjct: 126 GISSRGFWGKTLYHIEDL 143
>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
Length = 479
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP +V + +++ L++L
Sbjct: 5 VLFWHRRDLRITDNIGLATARQHSSKVVGVFCLDPNILERDDVAPVRVTYMIGSLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++RG P +P L + + + D EP+ + RD+ I+ ++ I+
Sbjct: 65 RYVQAGSQLLILRGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDKGIQC 124
Query: 137 IAR-VSHTLYDLDQLKPDS 154
+ L+ D+++ S
Sbjct: 125 LTHNWDQILHSPDEIRSGS 143
>gi|410027954|ref|ZP_11277790.1| DASH family cryptochrome [Marinilabilia sp. AK2]
Length = 474
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 5/141 (3%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQ 69
K +V WFR LR+HD+ L + V+ DP ++GI+K +FL++
Sbjct: 3 KRVVVWFRNDLRVHDHAPLFYAAEKAEEVIPVYCFDPRNFKKVSLGIDKTGNHRAKFLIE 62
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+++L NL+ L L +I+G+P ++L L K+ + F E+ K + +
Sbjct: 63 AVDNLRSNLQSLGGDLVIIQGKPEEVLVSLAKKHDAEAIFFSEEVTDEEKEVELQLEQNA 122
Query: 130 RELNIEVIARVSHTLYDLDQL 150
+ I+ A +LY + L
Sbjct: 123 WKHGIKTTAYWQSSLYHIQDL 143
>gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera]
Length = 212
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HDN L + V+ DP G S+ G +K +R FL++ + DL
Sbjct: 8 WFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 67
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
NL+K S L V G+P +L +L K + + ++ I +E +
Sbjct: 68 RQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEAAMKEEGV 127
Query: 135 EVIARVSHTLYDLDQL 150
E TLY +D L
Sbjct: 128 EXKYFWGSTLYHVDDL 143
>gi|339327951|ref|YP_004687643.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
gi|338170552|gb|AEI81605.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
Length = 511
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVF-----ILDPWFAGSSNVGINKWRFLLQCLEDL 74
WFR+ LR D+ +L LK C CVF ILDP A V + F+L+ LE L
Sbjct: 31 WFRRDLRADDHAALHYALKHCRQVWCVFVFDREILDPLIARGRKVD-RRVEFILRSLEPL 89
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L L V+ D +P+L E + D EP K RD +
Sbjct: 90 RRTLTDAGGGLIVLDDTARDAIPRLAAELDAEAVFTNHDYEPAAKRRDTAV 140
>gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
Length = 433
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ D+ +L LKG +FI D V + F+ +++L+ L
Sbjct: 9 WLRRDLRLEDHTALYHALKGPHPVLLLFIFDTNILSKLPVKDARVTFIYNTIKELNEQLA 68
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+ +S + V G P +L +E++ + D EP+ RD ++ R +I
Sbjct: 69 QHDSSIVVKHGSPEKAWTELMEEYQVKSVFTNHDYEPYAAERDDSLAEFLRSEHISFHTY 128
Query: 140 VSHTLYDLDQL 150
+++ D++
Sbjct: 129 KDQVIFEKDEI 139
>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max]
Length = 634
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDINL 78
WFR+ LR+ DNP+L K + V++ P G G +++W +L Q L LD +L
Sbjct: 9 WFRRDLRIEDNPALAAAAKEGSVL-PVYVWCPKEEGQFYPGRVSRW-WLKQSLAHLDQSL 66
Query: 79 RKLNSRLFVIRGQPADI-LPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+ L SRL +I+ + L + K + T + F +P VRD NI E I V
Sbjct: 67 KSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGISVQ 126
Query: 138 ARVSHTLYD 146
+ LY+
Sbjct: 127 SYNGDLLYE 135
>gi|386818429|ref|ZP_10105647.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
gi|386423005|gb|EIJ36840.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
Length = 476
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DNP+L K C +FI DP S +G +L L+ LD +L+
Sbjct: 7 WLRQDLRLADNPALYHACKTCANVILIFIDDPLPGSVSRLGAASQVWLHHSLQALDASLQ 66
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
+RL + +G +L L E T + + +P RD+ I + ++
Sbjct: 67 AAGNRLTLRQGSALPVLQALLAETGATHVYWNRVYDPASLARDKQIKEILKQ 118
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSS----NVGINKWR 65
+ K ++ W+R LR+HD+ L +G+K F C I F +S G + +
Sbjct: 2 SNKRILIWYRNDLRIHDHEPLYQGIKEGDLVIPFYCFDIRQ--FQTTSYAFPKTGNFRGQ 59
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FLL+ + +L +L+ L S L V +G P I+P+L KE + + F E+ ++ +
Sbjct: 60 FLLESVANLRQSLQDLGSDLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKV 119
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
+ L ++V TLY + L
Sbjct: 120 KQALKPLKVKVPGFWGATLYHWNDL 144
>gi|347541255|ref|YP_004848681.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
gi|345644434|dbj|BAK78267.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
Length = 469
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 49/106 (46%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+ +L L+ CVF+ D ++ F+ L +L +LR
Sbjct: 8 WFRRDLRLDDHAALHAALRHSERVICVFVFDRDILDHLPAQDHRVDFIWHSLMELKEHLR 67
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L S L V G+P D +P L +E + + D EP RD +
Sbjct: 68 ALGSDLVVASGRPVDCIPALAQEHGASTVWASRDYEPAACQRDAAV 113
>gi|343403537|dbj|BAK61591.1| cryptochrome2a [Glycine soja]
gi|343403539|dbj|BAK61592.1| cryptochrome2a [Glycine soja]
gi|343403541|dbj|BAK61593.1| cryptochrome2a [Glycine soja]
gi|343403543|dbj|BAK61594.1| cryptochrome2a [Glycine soja]
gi|343403545|dbj|BAK61595.1| cryptochrome2a [Glycine soja]
gi|343403547|dbj|BAK61596.1| cryptochrome2a [Glycine soja]
gi|343403549|dbj|BAK61597.1| cryptochrome2a [Glycine soja]
Length = 631
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDINL 78
WFR+ LR+ DNP+L K + V++ P G G +++W +L Q L LD +L
Sbjct: 9 WFRRDLRIEDNPALTAAAKEGSVL-PVYVWCPKEEGQFYPGRVSRW-WLKQSLAHLDQSL 66
Query: 79 RKLNSRLFVIRGQPADI-LPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+ L SRL +I+ + L + K + T + F +P VRD NI E I V
Sbjct: 67 KSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGISVQ 126
Query: 138 ARVSHTLYD 146
+ LY+
Sbjct: 127 SYNGDLLYE 135
>gi|226364473|ref|YP_002782255.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4]
gi|226242962|dbj|BAH53310.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4]
Length = 446
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L + +F+LD +S G + FL + L LD +L
Sbjct: 7 WFRRDLRLGDLPTLHTVAESGARALGLFVLDDRLLKTS--GGARRDFLFRSLAALDDSL- 63
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
+ RL V++G P D++P++ K+ + D P+G+ RD +
Sbjct: 64 --DGRLLVVKGDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVA 108
>gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
MED217]
gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
MED217]
Length = 432
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+ DN SL + K V+ DP G K +FL++ + +L
Sbjct: 6 WFRNDLRVKDNTSLFKASKNANLLAAVYCFDPRQFQEDQFGFKKTERFRAQFLIETVTEL 65
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
+L +LN +FV QP DILP+L + + L F+E+
Sbjct: 66 REHLAELNIPIFVYNEQPEDILPQLIERLQIDQLFFQEE 104
>gi|351734424|ref|NP_001235220.1| cryptochrome 2 [Glycine max]
gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
Length = 634
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDINL 78
WFR+ LR+ DNP+L K + V++ P G G +++W +L Q L LD +L
Sbjct: 9 WFRRDLRIEDNPALTAAAKEGSVL-PVYVWCPKEEGQFYPGRVSRW-WLKQSLAHLDQSL 66
Query: 79 RKLNSRLFVIRGQPADI-LPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+ L SRL +I+ + L + K + T + F +P VRD NI E I V
Sbjct: 67 KSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGISVQ 126
Query: 138 ARVSHTLYD 146
+ LY+
Sbjct: 127 SYNGDLLYE 135
>gi|48478134|ref|YP_023840.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
gi|48430782|gb|AAT43647.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
Length = 431
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR------FLLQCLEDL 74
FR+ LR++DN +L + L T +FI+DP + V N++R F++ L DL
Sbjct: 6 FRRDLRLYDNTALLKSLNNETA--TIFIMDP-----AQVKNNEYRSEKALNFMISSLYDL 58
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
++ + +L V G P D+L +L + D PF RD+ I + NI
Sbjct: 59 MTDIEGNHGKLAVFHGDPVDVLKRLVNRENINEIYINRDYTPFSIKRDERIKEFSIKNNI 118
Query: 135 EVIARVSHTLYD 146
+ A + L D
Sbjct: 119 KFNALDDYFLSD 130
>gi|453071323|ref|ZP_21974474.1| deoxyribodipyrimidine photo-lyase [Rhodococcus qingshengii BKS
20-40]
gi|452759367|gb|EME17730.1| deoxyribodipyrimidine photo-lyase [Rhodococcus qingshengii BKS
20-40]
Length = 444
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L +F+LD G + G + L L LD
Sbjct: 3 WFRRDLRVGDLPTLTAAADAGGQTLGLFVLDEKLLGPA--GSPRQNQLFANLSALD---N 57
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+L+ RL V+RG PAD++P++ + + D P+G+ RD + +E+IA
Sbjct: 58 QLDGRLMVVRGDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVAE-----KVELIAT 112
Query: 140 VS 141
S
Sbjct: 113 GS 114
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+HD+ L + ++ + DP G + G K +FLL+ + DL
Sbjct: 6 WFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESVADL 65
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+LR S L + +G P +LP+L + K + F + + + + +L I
Sbjct: 66 RQSLRGKQSDLILRQGHPETVLPELAQALKVETVYFNREVTAEEIEVENRLRSALADLGI 125
Query: 135 EVIARVSHTLYDLDQL 150
E + S TL+ +QL
Sbjct: 126 ECLRFWSSTLFHPEQL 141
>gi|384103094|ref|ZP_10004075.1| deoxyribodipyrimidine photo-lyase [Rhodococcus imtechensis RKJ300]
gi|383839436|gb|EID78789.1| deoxyribodipyrimidine photo-lyase [Rhodococcus imtechensis RKJ300]
Length = 446
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L + +F+LD +S G + FL + L LD
Sbjct: 7 WFRRDLRLGDLPTLHTVAESGARALGLFVLDDRLLKTS--GGARRDFLFRSLAALD---D 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
+L+ RL V++G P D++P++ K+ + D P+G+ RD +
Sbjct: 62 QLDGRLLVVKGDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVA 108
>gi|429190056|ref|YP_007175734.1| deoxyribodipyrimidine photolyase [Natronobacterium gregoryi SP2]
gi|448325964|ref|ZP_21515338.1| deoxyribodipyrimidine photolyase [Natronobacterium gregoryi SP2]
gi|429134274|gb|AFZ71285.1| deoxyribodipyrimidine photolyase [Natronobacterium gregoryi SP2]
gi|445613519|gb|ELY67217.1| deoxyribodipyrimidine photolyase [Natronobacterium gregoryi SP2]
Length = 468
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW-FAGSSNVGINKWRFLLQCLEDLD 75
++HW R+ LR DN SL +F+ DP +S + + LL+ L+ L
Sbjct: 2 LLHWHRRDLRTRDNRSLARAASTDEPVVSLFVFDPGVLEHASPIRVA---CLLEALDGLR 58
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
R S L V RG P+D LP++ E+ +T+ E+ + RD+ + + ++
Sbjct: 59 SWYRDHGSDLLVARGDPSDSLPRIAAEYDVDTVTWNENYSGLARERDRAVTAALEDASV 117
>gi|386821526|ref|ZP_10108742.1| deoxyribodipyrimidine photolyase [Joostella marina DSM 19592]
gi|386426632|gb|EIJ40462.1| deoxyribodipyrimidine photolyase [Joostella marina DSM 19592]
Length = 434
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR++DN E LK +FI D + F+ L+++ +
Sbjct: 7 IFWFRRDLRLNDNIGFLEALKSGNPVMPIFIFDSNILQELPKNDARVTFIHGRLQEMRME 66
Query: 78 LR-KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ + +S + + P ++ L KE++ + D EP+ K RDQ I T IE
Sbjct: 67 FQERYDSSIALYFDTPINVFKSLVKEYEIQAIYTNRDYEPYAKERDQEISTYVSSKKIEF 126
Query: 137 IARVSHTLYDLDQLKPD 153
+++ D++ D
Sbjct: 127 KTFKDQVVFEKDEVVKD 143
>gi|332293614|ref|YP_004432223.1| deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter sp. 4H-3-7-5]
Length = 465
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
S+ K + WFR+ LR+ DN E LKG +FI D + F+ + L
Sbjct: 31 SSNKVNIFWFRRDLRLDDNVGFLEALKGDLPVLPIFIFDKEILDKLPKDDARVTFIFETL 90
Query: 72 EDLDINLRKLN-SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
+ + L+ + S L + P + +L K+++ + D EP+ K RD+ I +L +
Sbjct: 91 QKMRSTLQDEHASSLAMYYDTPEKVFKQLSKDFEIATVFTNRDYEPYAKERDEVISSLLK 150
Query: 131 ELNIEVIARVSHTLYDLDQL 150
+ +IE +++ D++
Sbjct: 151 DNDIEFKTFKDQVIFEKDEV 170
>gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
Length = 520
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-----------SNVGINKWRFLL 68
WFR LR+ DN +L + RCV+ DP GS G ++ RFL
Sbjct: 7 WFRTDLRVRDNRALAVASEA-ERLRCVYCFDPREFGSREYGGKDSFRYEKTGSHRTRFLR 65
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
+ +E L I+LR+ + L V G+P +++P L + + F P P + ++ +
Sbjct: 66 ESVEALRISLRERGNELVVRHGRPEEVVPSLAADIDADLVCFHALPTPEERAVERAVTER 125
Query: 129 CRELNIEVIARVS----HTLYDLDQL 150
+ +V A V HTLY D +
Sbjct: 126 LADPETDVDADVESIWGHTLYHPDDV 151
>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 504
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 62/147 (42%)
Query: 4 LSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK 63
++T P+ + WFR+ LR+ D +L L+ T CVFI D +
Sbjct: 1 MTTSPLPDLPYARSLIWFRRDLRVFDQAALHHALRQSRTVFCVFIFDSDILQHLPEQDRR 60
Query: 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQ 123
FL L +L L KL L V + + +P L +E + D EP RD
Sbjct: 61 IEFLHASLTELHEELVKLGGALIVRHARAVEAIPALARELDVEAVFINHDYEPQAIARDA 120
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQL 150
I T ++ +I + + +++ D++
Sbjct: 121 AIATALQQHDIALHSSKDQVVFENDEV 147
>gi|351729025|ref|ZP_08946716.1| deoxyribodipyrimidine photo-lyase [Acidovorax radicis N35]
Length = 496
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 1 MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG 60
M+P S P+ P+ + WFR+ LR +D +L L C C F+ D +
Sbjct: 3 MAPSSEPSYPSG-----LVWFRRDLRANDQAALYRALTQCQQVHCAFVFDREILNALPRT 57
Query: 61 INKWRFLLQCLEDLDINLRKLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEP 116
+ F+ + L +LD LR L+ L V+ +D +P L + D EP
Sbjct: 58 DRRVEFIRESLVELDETLRMLSGHAQGGLIVLHAVASDAIPALANALGVQAVFANHDDEP 117
Query: 117 FGKVRDQNIMTLCRELNIEVIARVSHTLYD 146
RD + T + R HT D
Sbjct: 118 QALERDSQVRT-----QLATAGRAFHTFKD 142
>gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max]
Length = 642
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDINL 78
WFR+ LR+ DNP+L K + V++ P G G +++W +L Q L LD +L
Sbjct: 9 WFRRDLRIEDNPALTAAAKEGSVL-PVYVWCPKEEGQFYPGRVSRW-WLKQSLAHLDQSL 66
Query: 79 RKLNSRLFVIRGQPADI-LPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+ L SRL +I+ + L + K + T + F +P VRD NI E I V
Sbjct: 67 KSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGISVQ 126
Query: 138 ARVSHTLYD 146
+ LY+
Sbjct: 127 SYNGDLLYE 135
>gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
Length = 455
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%)
Query: 25 LRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSR 84
LR+HD+P LR ++ +F+ DP N+ FL CL DLD LR+ R
Sbjct: 12 LRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVGFHAANRAAFLADCLGDLDAGLRERGGR 71
Query: 85 LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L V G PA ++ +L + + + R + E++
Sbjct: 72 LVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEGTGAELV 124
>gi|440680804|ref|YP_007155599.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
gi|428677923|gb|AFZ56689.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
Length = 478
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ D+ L + + VF LDP ++ + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDHTGLAKAREQSAKVVGVFCLDPDILQRDDIAPARVTYMIGCLQALQK 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L +++G P ++P L + + + D EP+ + RD ++ E I+
Sbjct: 65 RYNQAGSQLLILQGNPVSVIPDLAAALQAKAVFWNWDVEPYSQTRDIAVIDSLTEKGIQF 124
Query: 137 I 137
+
Sbjct: 125 L 125
>gi|397735105|ref|ZP_10501808.1| deoxyribodipyrimidine photo-lyase [Rhodococcus sp. JVH1]
gi|396929330|gb|EJI96536.1| deoxyribodipyrimidine photo-lyase [Rhodococcus sp. JVH1]
Length = 446
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L + +F+LD +S G + FL + L LD
Sbjct: 7 WFRRDLRLGDLPTLHTVSESGARALGLFVLDDRLLTTS--GGARRDFLFRSLAALD---D 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
+L+ RL V++G P D++P++ K+ + D P+G+ RD +
Sbjct: 62 QLDGRLLVVKGDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVA 108
>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
Length = 455
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%)
Query: 25 LRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSR 84
LR+HD+P LR ++ +F+ DP N+ FL CL DLD LR+ R
Sbjct: 12 LRLHDHPPLRAAVREAEEVVPLFVRDPGIKKVGFHAANRAAFLADCLGDLDAGLRERGGR 71
Query: 85 LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L V G PA ++ +L + + + R + E++
Sbjct: 72 LVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEGTGAELV 124
>gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
17029]
gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
ATCC 17029]
Length = 471
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ WFR+ LR+ DNP L E +FILDP + KWR L +E
Sbjct: 7 LILWFRRDLRLADNPMLAEAAATGRPLIPLFILDP--ETEALGAAPKWRLGLG-VEAFAQ 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L L SRL + RG +L L E + + EP + RD+ + R+ IE
Sbjct: 64 ALEGLGSRLVLRRGPALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQAGIEA 123
Query: 137 IARVSHTLYD 146
HT+++
Sbjct: 124 ARHAGHTIFE 133
>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 477
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN----VGINKWRFLL 68
T ++ W R+ LR+ DN ++ ++ V++LDP + + FLL
Sbjct: 2 TASRVLFWHRRDLRLADNLGIQAAVEISPAVTGVYVLDPALIQPPQSLPPMAPARLWFLL 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ L +L R SRL ++ G P +LP L + + + D EP+ + RD+ +
Sbjct: 62 ESLIELQQRWRAAGSRLLILEGDPVQVLPPLAERLGAEAVVWNRDVEPYSRERDRQV 118
>gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum]
gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum]
Length = 629
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDI 76
+ WFR+ LR+ DNP+L + + F VFI P G G +++W +L Q L LD
Sbjct: 7 IVWFRRDLRIEDNPALAAAARDGSVFP-VFIWCPKEEGQFYPGRVSRW-WLKQSLAHLDQ 64
Query: 77 NLRKLNSRLFVIRGQPA-DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L ++L +I+ + L + + T + F +P VRD NI EL I
Sbjct: 65 SLKSLGAKLVLIKTDSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVELGIS 124
Query: 136 VIARVSHTLYD 146
V + LY+
Sbjct: 125 VKSYNGDLLYE 135
>gi|89097604|ref|ZP_01170493.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911]
gi|89087900|gb|EAR67012.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911]
Length = 474
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFRK LR+HD+ L E ++I +P +G V +F + LE LD LR
Sbjct: 5 WFRKDLRIHDHRPLAEACASAEEVIPLYIAEP-LSGRKEVSRRHIQFAAEGLEQLDEGLR 63
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110
L RLF +G DIL +L K + L F
Sbjct: 64 GLGGRLFAAQGTIIDILEELLKRYGDFSLFF 94
>gi|332662341|ref|YP_004445129.1| deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
1100]
gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
1100]
Length = 449
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
WFR+ LR+ DN L LK +FI D + + FL Q + +L L
Sbjct: 8 WFRRDLRLQDNAGLYHALKSNFPVLPLFIFDTEILDELDDPEDARVAFLHQRITELQAEL 67
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
L S + V G+PA++ P++ +++ + D EP RD+ + L + NI +
Sbjct: 68 EHLGSSMLVRYGKPAEVWPEILQDYLVAEVYTNHDYEPRAIQRDEAVQNLLAQQNIPYFS 127
Query: 139 RVSHTLYD 146
+++
Sbjct: 128 FKDQVIFE 135
>gi|325981909|ref|YP_004294311.1| deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
Length = 434
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
+V WFR+ LR+ DN L L VFI DP + F+ L+ L
Sbjct: 6 VVFWFRRDLRLDDNVGLSHALASGQPVLPVFIFDPSILTGLPENDARVTFIYDTLQTLRT 65
Query: 77 NL-RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L + +S + + G ++ ++ + T + D EP+ + RD+ + + ++
Sbjct: 66 QLEERYSSSIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVCEWLKARSVA 125
Query: 136 VIARVSHTLYDLDQLKPDSRG 156
H L++ +++ DS G
Sbjct: 126 FNTYKDHVLFEKNEIAKDSGG 146
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ WFR+ LR+ DNP+ L+ + VFILD AG G +L L L+
Sbjct: 6 VILWFRQDLRLQDNPAYHAALESGSPILPVFILDDDNAGLWKRGAASRWWLYHSLSSLN- 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ LN L + RG I+P+L + + + EP+ RD I T + +I V
Sbjct: 65 --KSLNGTLAIFRGDATKIIPELVEAACAHAVFWNRCYEPWRIARDSKIKTALEQSSIAV 122
Query: 137 IARVSHTLYD 146
+ + LY+
Sbjct: 123 KSSNASLLYE 132
>gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
MED134]
Length = 436
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
ST+K + WFR+ LR+ DN E LKG +FI D + F+ L
Sbjct: 2 STKKVTIFWFRRDLRLDDNVGFLEALKGDYPVLPIFIFDKEILDKLPEDDARVTFIYNEL 61
Query: 72 EDLDINLR-KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
+ + L+ + +S L + P I +L ++ + D EP+ RD+ I +L
Sbjct: 62 QKMRDTLQAEHDSSLAMFYSTPEQIFKELIADYDVQAVITNRDYEPYALERDKKIASLLE 121
Query: 131 ELNIEVIARVSHTLYDLDQL 150
E +I +++ D++
Sbjct: 122 ENDISFTTFKDQVIFEKDEI 141
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 61/138 (44%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP ++ + +++ CL++L
Sbjct: 5 ILFWHRRDLRISDNIGLAAACQKSQKVIGVFCLDPDILERDDIAPARVTYMMGCLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ P+ +P L + + D EP+ + RD+ + E I V
Sbjct: 65 RYAEAGSQLLILHQNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEEKGIAV 124
Query: 137 IARVSHTLYDLDQLKPDS 154
+ L+ +++ +S
Sbjct: 125 ESFWDQLLHAPGEIRTNS 142
>gi|111021970|ref|YP_704942.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1]
gi|110821500|gb|ABG96784.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1]
Length = 446
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L + +F+LD +S G + FL + L LD
Sbjct: 7 WFRRDLRLGDLPTLHTVSESGARALGLFVLDDRLLTTS--GGARRDFLFRSLAALD---D 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
+L+ RL V++G P D++P++ K+ + D P+G+ RD +
Sbjct: 62 QLDGRLLVVKGDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVA 108
>gi|374596767|ref|ZP_09669771.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Gillisia limnaea DSM 15749]
gi|373871406|gb|EHQ03404.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Gillisia limnaea DSM 15749]
Length = 433
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLL 68
EK +V WFR LR+ DN SL K V+ +DP G G + +FLL
Sbjct: 2 EKSIV-WFRNDLRIADNKSLSVACKNSEMVIGVYFMDPEKFEIGEFGFKKTGKFRAKFLL 60
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP 116
+ L++L NLRKLN L +I+ +P +L + ++ T L +++ P
Sbjct: 61 ESLQELWDNLRKLNISLLIIKDKPESKFTELVERFQITSLYLQKEWTP 108
>gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
Length = 472
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DNP+L G +F+LD A G + FL +CL DLD R
Sbjct: 3 WLRRDLRLDDNPALIAA-AGQGPVLALFVLDE--ALCRPAGPVRLAFLYRCLRDLD---R 56
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L RL V G P ++P + E + D P+G+ RD+ +
Sbjct: 57 RLAGRLCVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRDERV 102
>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 492
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILD-----PWFAGSSNVGI----NKWRFLLQC 70
W R+ LR++DN +L LK FI D P G + + F+ Q
Sbjct: 7 WLRRDLRLYDNAALHYALKESKQVWVTFIFDEEILKPLLKGELDAQRLKHDRRVDFIWQG 66
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
LE +D LRK L V G+P + +P++ K+ + D EP RD+ + TL
Sbjct: 67 LEQIDEELRKQGGGLIVRFGKPVECIPQIAKDLGVDTVFTNHDYEPSAIARDEAVKTLLA 126
Query: 131 ELNIE 135
+ +I+
Sbjct: 127 KSDIQ 131
>gi|365866676|ref|ZP_09406283.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
gi|364003865|gb|EHM24998.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
Length = 451
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HDNP LR L+ +F+ D + N+ FL CL LD LR
Sbjct: 4 FTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNRLAFLADCLAALDAGLRH 63
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
RL V RG+ A ++ ++ +E + + R++ I
Sbjct: 64 RGGRLVVRRGEAAAVVRRVAEETGAASVHVAAGVSRYAARREERI 108
>gi|387877106|ref|YP_006307410.1| deoxyribodipyrimidine photo-lyase [Mycobacterium sp. MOTT36Y]
gi|406031989|ref|YP_006730881.1| Deoxyribo dipyrimidine photo-lyase [Mycobacterium indicus pranii
MTCC 9506]
gi|443306905|ref|ZP_21036692.1| deoxyribodipyrimidine photo-lyase [Mycobacterium sp. H4Y]
gi|386790564|gb|AFJ36683.1| deoxyribodipyrimidine photo-lyase [Mycobacterium sp. MOTT36Y]
gi|405130536|gb|AFS15791.1| Deoxyribo dipyrimidine photo-lyase [Mycobacterium indicus pranii
MTCC 9506]
gi|442764273|gb|ELR82271.1| deoxyribodipyrimidine photo-lyase [Mycobacterium sp. H4Y]
Length = 442
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L + C F+LDP SS G + +FL L L +L
Sbjct: 6 WFRRDLRLRDHPALLAAAEAHEVLAC-FVLDPRLESSS--GQRRLQFLGDSLRRLRADL- 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ RL V RG+P +P + KE T + ED PFG RD+ +
Sbjct: 62 --DGRLLVTRGRPDTQIPHIAKEIGATSVHISEDFAPFGTRRDERV 105
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ ++ S+L +I+ PA L KL + + +D EP + RD+++ E+ I+V
Sbjct: 65 DYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEVGIKV 124
>gi|92429536|gb|ABD93512.2| DNA photolyase protein [Coffea canephora]
Length = 189
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+HDN L + V+ DP G S+ G +K FLL+ + DL
Sbjct: 1 WFRNDLRVHDNECLNSANNESMSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLESVADL 60
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
L+ S L V G+P +L +L + + + + NI + +E +
Sbjct: 61 RKTLQAKGSDLVVRIGKPETVLVELAQAVGAEAVYAHREVSHDEVKAEDNIEAVLKEEGV 120
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY +D L
Sbjct: 121 EVKYFWGSTLYHIDDL 136
>gi|399576573|ref|ZP_10770328.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
gi|399238017|gb|EJN58946.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
Length = 492
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----------VGINKWRFLL 68
WFR+ LR+HDNP L + + V+ DP G+++ G ++ +F
Sbjct: 9 WFRRDLRLHDNPVLVDAARA-EALLPVYCFDPREYGTADFGGPDSFRYEKTGGHRAQFRR 67
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
+ + DL +LR S L V G+P +LP L + F+ P + ++ +
Sbjct: 68 ESVTDLRDSLRAAGSDLLVAHGRPETVLPALVSTTDADAVFFQTLPTSEERTTERAVTAR 127
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
RE + V +HTL L L
Sbjct: 128 LREEGVAVHRLWTHTLVHLADL 149
>gi|347536503|ref|YP_004843928.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
gi|345529661|emb|CCB69691.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
Length = 428
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR DN L L+ + +FI D + F+ L+ ++
Sbjct: 3 IFWFRRDLRWTDNVGLYHALQENQSVFPIFIFDHNILQQLEKNDARVDFIHDSLQKMNDE 62
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
+K NS + G P +I +L T + +D EP + RD+ I L +E I +
Sbjct: 63 FQKYNSSIATFYGDPIEIWKELITNHNITSVYINKDYEPAARERDKKIYYLLQEHQIPLK 122
Query: 138 ARVSHTLYDLDQL 150
A +++ +++
Sbjct: 123 AYKDQVIFEKNEI 135
>gi|359447933|ref|ZP_09237491.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20480]
gi|358046252|dbj|GAA73740.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20480]
Length = 436
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 15/145 (10%)
Query: 15 KHMVHWFRKGLRMHDNPSLRE-GLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLL 68
K +++W + LR++DNP + L+ C VF+++P WF ++ G NK+ FL+
Sbjct: 3 KRILYWLQNDLRLNDNPIFSKLALQQCA-LDVVFVINPNWFKNTNYQQKQYGENKYTFLM 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +L L L V+ G+P +L + KE + + E FG + I L
Sbjct: 62 QSLYELQQALIACGQTLHVLEGEPVSVLKQRIKEQHIDEVVYSEQ---FGVYEQREINLL 118
Query: 129 ---CRELNIEVIARVSHTLYDLDQL 150
C E + + TLY + L
Sbjct: 119 KAHCPE--TQFTGTLQDTLYQQNDL 141
>gi|379763280|ref|YP_005349677.1| phr protein [Mycobacterium intracellulare MOTT-64]
gi|378811222|gb|AFC55356.1| phr protein [Mycobacterium intracellulare MOTT-64]
Length = 442
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L + C F+LDP SS G + +FL L L +L
Sbjct: 6 WFRRDLRLRDHPALLAAAEAHEVLAC-FVLDPRLESSS--GQRRLQFLGDSLRRLRADL- 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ RL V RG+P +P + KE T + ED PFG RD+ +
Sbjct: 62 --DGRLLVTRGRPDTQIPHIAKEIGATSVHISEDFAPFGTRRDERV 105
>gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces
ambofaciens ATCC 23877]
Length = 457
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HD+P LR L+ +F+LDP + N+ FL CL DLD +LR+
Sbjct: 8 FTADLRLHDHPPLRAALRAADEVVPLFVLDPGIHAAGFDAPNRRAFLADCLHDLDASLRR 67
Query: 81 LNSRLFVIRG 90
RL V G
Sbjct: 68 RAGRLVVRSG 77
>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
Length = 513
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVF-----ILDPWFAGSSNVGINKWRFLLQCLEDL 74
WFR+ LR D+ +L LK C CVF ILDP A V + F+L+ LE L
Sbjct: 31 WFRRDLRADDHAALHYALKHCRQVWCVFVFDREILDPLIARGRKVD-RRVEFILRSLEPL 89
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L L V+ D +P+L E + D EP K RD +
Sbjct: 90 RRTLTDAGGGLIVLDDIARDAIPRLAAELDADAVFTNHDYEPAAKRRDTAV 140
>gi|387887266|ref|YP_006317565.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386872082|gb|AFJ44089.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 464
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++K +HWFR+ LR+ DNP+L + + T +FILD + +G +L L
Sbjct: 2 SKKIAIHWFRQDLRLADNPALHQASQTDETI-TIFILDE----NQEIGGASKLWLSHSLN 56
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L+ + L+++L G P +I+ KL KE T + + + RD I +E
Sbjct: 57 SLN---KSLDNKLNFFSGNPLEIIKKLIKENNITDFYWNRCYDKYSINRDTQIKQFLQEQ 113
Query: 133 NIEVIARVSHTLYDLDQLKPD 153
NI + L + Q K D
Sbjct: 114 NINASSFNGSLLIEPSQCKKD 134
>gi|448328561|ref|ZP_21517870.1| deoxyribodipyrimidine photolyase [Natrinema versiforme JCM 10478]
gi|445615302|gb|ELY68951.1| deoxyribodipyrimidine photolyase [Natrinema versiforme JCM 10478]
Length = 468
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW-FAGSSNVGINKWRFLLQCLEDLDI 76
V W R+ LR DN L + F+LDP +S V + LL+ LEDL
Sbjct: 3 VFWHRRDLRATDNRGLARAAATDESVVPCFVLDPTVLEHASPVRVA---CLLEALEDLRS 59
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R S L V+RG+ + ++P++ E+ T + + ED + RD+ + E I
Sbjct: 60 WYRDRESDLLVVRGEASAVVPEIAAEYDVTRVVWNEDYSGLARERDRAVRAALEEEGI-- 117
Query: 137 IARVSHTLYDLDQLKPDS 154
+ +++D +P S
Sbjct: 118 ---AAESVHDAIHHEPGS 132
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ ++ S+L +I+ PA L KL + + +D EP + RD+++ E+ I+V
Sbjct: 65 DYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEVGIKV 124
>gi|359774690|ref|ZP_09278046.1| deoxyribodipyrimidine photo-lyase [Gordonia effusa NBRC 100432]
gi|359308173|dbj|GAB20824.1| deoxyribodipyrimidine photo-lyase [Gordonia effusa NBRC 100432]
Length = 461
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
+ WFR+ LR+ D P L + VF+LD A G + FL C+ L+
Sbjct: 5 AIMWFRRDLRLADLPPLLAAVDRTAEAIAVFVLDD--ALLRTAGGPRMAFLAGCVNALND 62
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L N RL ++RG P + +P L ++ + D P+G RD +
Sbjct: 63 DL---NGRLLILRGPPEEAIPALVRQVDADSVHISADFGPYGTGRDSAV 108
>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
Length = 576
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN------VGINKWRFLLQCL 71
+ WFR LR+ DN SL + + V+ +DP +++ G + +FL++CL
Sbjct: 86 IVWFRNDLRILDNESLLQAWLSSDSLLPVYCVDPRLFHTTHHFAFPKTGALRAQFLIECL 145
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
DL NL K LF+ G+P DILP L + + + +++
Sbjct: 146 ADLKNNLMKRGLNLFIRHGKPEDILPSLARAFSAHTVYAQKE 187
>gi|226508658|ref|NP_001146707.1| uncharacterized protein LOC100280309 [Zea mays]
gi|219888435|gb|ACL54592.1| unknown [Zea mays]
Length = 550
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW-FAGSSNV------GINKWRFLLQC 70
V WFR LR+ DN +L V+ +DP FAGS++ G + +FL++C
Sbjct: 54 VVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAGSTHYFGFPKKGALRAQFLIEC 113
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
L DL +LRK L V G+P +ILP + K
Sbjct: 114 LGDLKQSLRKKGLDLLVRHGKPEEILPSIAK 144
>gi|254821492|ref|ZP_05226493.1| Phr protein [Mycobacterium intracellulare ATCC 13950]
Length = 442
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L + C F+LDP SS G + +FL L L +L
Sbjct: 6 WFRRDLRLRDHPALLAAAEAHEVLAC-FVLDPRLESSS--GQRRLQFLGDSLRRLRADL- 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ RL V RG+P +P + KE T + ED PFG RD+ +
Sbjct: 62 --DGRLLVTRGRPDTQIPHIAKEIGATSVHISEDFAPFGTRRDERV 105
>gi|433591509|ref|YP_007281005.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|448333271|ref|ZP_21522481.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|433306289|gb|AGB32101.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|445623512|gb|ELY76922.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
Length = 467
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW---FAGSSNVGINKWRFLLQCLEDL 74
V W R+ LR DN L +F+LDP +A V LL+ LEDL
Sbjct: 3 VFWHRRDLRPDDNRGLARAAAADEPVVPLFVLDPTVLDYASPVRVAT-----LLEALEDL 57
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
R+ S L V+RG+ + +P++ E T + + ED + RD+ + + I
Sbjct: 58 RSQYRERGSDLLVVRGEASAAVPEVATEHDATTVVWNEDYSGLARERDRAVRAALEDEGI 117
Query: 135 EVIARVSHTLYDLDQLKPDS 154
+ +++D +P S
Sbjct: 118 -----AAESVHDAIHHEPGS 132
>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
Length = 1025
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLK-----GCTTFRCVFILDPWFAGSS-----NVGINKW 64
K +V WFR LR+HDN + + ++ + V+ DP G++ G ++
Sbjct: 8 KRVVLWFRNDLRLHDNYIVHDAVQRVKRGEASEVLPVYCFDPRVYGTTPWGHFKTGAHRA 67
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
FLL+C+ DL LR + S L V G+P ++LP L +
Sbjct: 68 AFLLECVTDLKSRLRDVGSDLLVAFGKPEEVLPGLLE 104
>gi|424854055|ref|ZP_18278413.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus PD630]
gi|356664102|gb|EHI44195.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus PD630]
Length = 446
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L + +F+LD +S G + FL + L LD
Sbjct: 7 WFRRDLRLGDLPTLHTVAESGARALGLFVLDDRLLTTS--GGARRDFLFRSLAALD---D 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
+L+ RL V++G P D++P++ ++ + D P+G+ RD + ++E++A
Sbjct: 62 RLDGRLLVVKGDPVDVVPRVAEKVSAEEVHVSADYGPYGRERDAAVAE-----HVELVA 115
>gi|448402770|ref|ZP_21572126.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
gi|445664862|gb|ELZ17552.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
Length = 465
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW---FAGSSNVGINKWRFLLQCLED 73
+VHW R+ LR +DN L G +F+LDP +A V LL+ L+D
Sbjct: 2 IVHWHRRDLRPNDNRGLARA-AGDGPVVPLFVLDPTVLEYASPIRVAC-----LLEALDD 55
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L R+ S L V+RG+ + ++P++ E+ + + ED RD+ + + +
Sbjct: 56 LRAWYRERGSELLVVRGEASAVVPEVAAEYDAARVVWNEDYSGLAAERDRAVRAALEDAD 115
Query: 134 I 134
+
Sbjct: 116 V 116
>gi|448704049|ref|ZP_21700589.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445796665|gb|EMA47166.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 475
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLE 72
V WFR LR+ DNP+L L+ V++ DP G + +G ++ RF + +
Sbjct: 5 VVWFRDDLRLTDNPTLSRALEAAERIVPVYVFDPRRRGETQYDTPKLGPHRARFRRESVL 64
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DL LR+ + L V G D++P+L + + + P + R++ + R L
Sbjct: 65 DLRTRLRERDGDLLVETGHVEDVIPELVDRYDAAAVYAQTKPATEERSRERAVR---RAL 121
Query: 133 --NIEVIARVSHTLYDLDQL 150
++++ ++ +HTL+ + L
Sbjct: 122 PGDVDLRSQWTHTLFHPEDL 141
>gi|390954368|ref|YP_006418126.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Aequorivita sublithincola DSM 14238]
gi|390420354|gb|AFL81111.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Aequorivita sublithincola DSM 14238]
Length = 434
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WF K LR+ DN SL + L V+ DP ++ G K +FL++ +E+L
Sbjct: 13 WFTKDLRVGDNHSLSKALTENEKVIGVYFFDPRHFDTTVYGFKKTEKFRAKFLIETVENL 72
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113
NL+KLN L V +P I P+L ++++ + F+ +
Sbjct: 73 RKNLQKLNISLLVFHEKPEVIFPQLVEKYQIKSIYFQRE 111
>gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group]
Length = 547
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-AGSSN------VGINKWRFLLQCLE 72
WFR LR+ DN ++ V+ +DP AGS++ G + +FL++CLE
Sbjct: 54 WFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLE 113
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFK 101
DL NL K L + G+P DILP + K
Sbjct: 114 DLKRNLTKQGLDLLIRHGKPEDILPSIAK 142
>gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group]
gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group]
Length = 547
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-AGSSN------VGINKWRFLLQCLE 72
WFR LR+ DN ++ V+ +DP AGS++ G + +FL++CLE
Sbjct: 54 WFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLE 113
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFK 101
DL NL K L + G+P DILP + K
Sbjct: 114 DLKRNLTKQGLDLLIRHGKPEDILPSIAK 142
>gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
Length = 434
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKG-CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
++WFR LR+HDNP L E K ++ L + + +G + RF+ + L+ L
Sbjct: 3 AIYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQGLGEQRERFITESLKALQ 62
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L L V++G P ++P L +++ + + G + + L L+I
Sbjct: 63 DDLQPLGQSLLVLQGSPELVIPDLVRDYGVDAVHASQCA---GSYETRAVRVLRERLHIP 119
Query: 136 VIARVSHTLYDLDQLK 151
V +TL+ +K
Sbjct: 120 VTEHAGNTLFRRSDIK 135
>gi|377821540|ref|YP_004977911.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. YI23]
gi|357936375|gb|AET89934.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. YI23]
Length = 498
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 51/131 (38%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR DN +L L C C F+ D + + F+ +LD LR
Sbjct: 10 WFRRDLRAADNAALYHALTRCRRVLCAFVFDREILAPLDKNDRRVPFIHASAVELDRTLR 69
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+ L + G P +P L ++ + D EP K RD+ + +I
Sbjct: 70 EAGGGLIALHGHPLHDIPALARDCDVNAVFANRDYEPAAKARDEAVGQKLASQDIAFFTF 129
Query: 140 VSHTLYDLDQL 150
++D D +
Sbjct: 130 KDQAVFDHDDV 140
>gi|453362943|dbj|GAC81211.1| deoxyribodipyrimidine photo-lyase [Gordonia malaquae NBRC 108250]
Length = 442
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+HD P+L T VF+LD A + F L CL L+
Sbjct: 3 WFRRDLRVHDLPTLTAAAADADTAVGVFVLDDQVARPG----PRTDFFLGCLAALN---E 55
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ RL ++ G P LP+L E + D P+G+ RD+ + T
Sbjct: 56 SLDGRLLILHGDPEVELPRLVDEIGAGSVHISADFSPYGRRRDEAVET 103
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + ++L CL+ L
Sbjct: 5 ILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ ++ S+L +I+ PA L KL + + +D EP + RD+++ E+ I+V
Sbjct: 65 DYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGIKV 124
>gi|411001340|ref|ZP_11377669.1| deoxyribodipyrimidine photo-lyase [Streptomyces globisporus C-1027]
Length = 451
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HDNP LR L+ +F+ D + N+ FL CL DLD LR
Sbjct: 4 FTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNRLAFLADCLADLDAGLRD 63
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ RL V RG A + ++ +E + + R++ +
Sbjct: 64 RDGRLIVRRGGTAREVKRVVEETGAQSVHIAAGVSGYAAQREERV 108
>gi|409358086|ref|ZP_11236449.1| deoxyribodipyrimidine photo-lyase type I [Dietzia alimentaria 72]
Length = 449
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DNP+L L VF+ DP S V + L L +
Sbjct: 7 WFRRDLRLADNPALLAALDSADEVLPVFVRDPGLLARSGVRAGRLEASLAALSE------ 60
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
RL + G P ++ L E + +P P+G+ RD + + + N ++
Sbjct: 61 STGGRLVIRSGDPETVIADLAAESGAYEVHISREPSPYGRRRDARVRSALSDDNRALV 118
>gi|83814965|ref|YP_445212.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83756359|gb|ABC44472.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
Length = 463
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGI---NKWRFLLQCLEDLDIN 77
FR+ LR+ DN L + FI DP N + + FL++ L++L
Sbjct: 9 FRRDLRLADNTGLARACRASDEVVPAFIFDPRQCDPDNNAFFSEHAFAFLVRSLKELRRR 68
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LR+ RLFV G PA IL +L + + D PF + RD + ++CRE
Sbjct: 69 LRERGGRLFVFEGDPAAILSELVSAGDISAVHVNRDYTPFARRRDDQLRSVCREEGARFQ 128
Query: 138 ARVSHTLYDLDQLKPDSRG 156
+ + L + ++++P G
Sbjct: 129 SSNALLLTEPEEVQPSGGG 147
>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
Length = 634
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDI 76
+ WFR+ LR+ DNP+L K + V+I P G G +++W +L Q L LD
Sbjct: 7 IVWFRRDLRIEDNPALAAAAKEGSVL-PVYIWCPKEEGQFYPGRVSRW-WLKQSLAHLDQ 64
Query: 77 NLRKLNSRLFVIRGQP-ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L SRL +I+ L + K + T + F +P VRD NI E I
Sbjct: 65 SLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGIS 124
Query: 136 VIARVSHTLYD 146
V + LY+
Sbjct: 125 VQSYNGDLLYE 135
>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 472
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLD 75
++ WFR+ LR+ DNP+L E L V++ D G S G +KW +L L LD
Sbjct: 7 VIVWFRRDLRLADNPALSEALASGEPVLPVYVFDEEGEGDSPDGAASKW-WLHHSLASLD 65
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L+ L SRL ++RG L +L +E + + EP RD I
Sbjct: 66 ESLKGLGSRLVLLRGSSKSALVELCREMGARAVFWNRRYEPAVVERDTEI 115
>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
Length = 490
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLLQCLEDL 74
W R LR+HD+ L + V+ DP F +S G + +FL++ + L
Sbjct: 6 WLRNDLRLHDHEPLHRATEQGADIIPVYCFDPRQFQATSFGFPKTGSYRAQFLIETVAAL 65
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
LR S L +++G+P + +P L K + + + E+ P +Q + T+ +L +
Sbjct: 66 KAELRSRGSNLVILQGKPEEEIPALVKAFDIAAVYWHEEVTPEEIEVEQRLETVLNQLKV 125
Query: 135 EVIARVSHTLYDLDQL 150
TLY D L
Sbjct: 126 TSEVYWGATLYHPDDL 141
>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
Length = 493
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA--GSSNVGINKWRFLLQC 70
T+ + W R+ LR DN L E K + V++LDP + W FL +
Sbjct: 2 TKFQSIFWHRRDLRFGDNIGLFEASKNSKSLIGVYVLDPKLLDLNRTTSEAKNW-FLGES 60
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L +L N SRL ++ G P +++ KL + C+ + E+ EP+ RD+ I
Sbjct: 61 LIELQKNWEIRGSRLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQI 115
>gi|356576533|ref|XP_003556385.1| PREDICTED: cryptochrome-2-like [Glycine max]
Length = 634
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDI 76
+ WFR+ LR+ DNP+L K + V+I P G G +++W +L Q L LD
Sbjct: 7 IVWFRRDLRIEDNPALAAAAKEGSVL-PVYIWCPKEEGQFYPGRVSRW-WLKQSLAHLDQ 64
Query: 77 NLRKLNSRLFVIRGQP-ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L SRL +I+ L + K + T + F +P VRD NI E I
Sbjct: 65 SLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGIS 124
Query: 136 VIARVSHTLYD 146
V + LY+
Sbjct: 125 VQSYNGDLLYE 135
>gi|443324015|ref|ZP_21052973.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
gi|442796190|gb|ELS05502.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
Length = 491
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLLQ 69
K ++ W+R+ LR+HD+ + + L+ ++ D FA +S G + +FLL+
Sbjct: 4 KRILIWYRRDLRLHDHKPMYQALQQEAQIIPLYCFDERQFAKTSFGFPKTGAFRSQFLLE 63
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
+ DL +L +L S L V RG P I+P L KE + + + F + + +
Sbjct: 64 AVADLRNSLSQLGSNLIVRRGLPEKIIPSLAKELEISAVYFHGEVTSEELAVEAALQKAL 123
Query: 130 RELNIEVIARVSHTLYDLDQL 150
++ I V +TLY D L
Sbjct: 124 SQIKISVKRFWGNTLYHPDDL 144
>gi|402495080|ref|ZP_10841814.1| deoxyribodipyrimidine photo-lyase [Aquimarina agarilytica ZC1]
Length = 433
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN L L +FI D S + F+ L ++++
Sbjct: 6 IFWFRRDLRLTDNTGLFFALSENKNVLPIFIFDTEILNSLPKKDARLNFIYDSLLEINLQ 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L K N + + G+P DI +L KE T + D EP+ + RD I
Sbjct: 66 LNKENKGISLYHGKPLDIFKQLCKEINITSVYTNHDYEPYAQNRDTEI 113
>gi|357387933|ref|YP_004902772.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae
KM-6054]
gi|311894408|dbj|BAJ26816.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae
KM-6054]
Length = 441
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F + LR+HDNP+L +F+ DP A + N+ FL CL +LD LR+
Sbjct: 8 FTQDLRLHDNPALHAAHTRADQVVPLFVTDPAVAAAGFAAPNRVAFLSGCLAELDAALRR 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCL 108
SRL V G A+ KL E T +
Sbjct: 68 TGSRLTVREGDTAEQTAKLAAETGATAV 95
>gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
Length = 488
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR D+ +L L C CVF+ D + + F+ + L +LD LR
Sbjct: 11 WFRRDLRACDHAALYHALTQCRKVHCVFVFDRAILDALPRADRRVAFIREALVELDAALR 70
Query: 80 KLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L S L V D +P+L + + + D EP RD + T + I
Sbjct: 71 TLASHPAGGLIVRHALATDAVPELAQALQAQAVYANHDDEPQALSRDSLVRTRLAQTGIA 130
Query: 136 VIARVSHTLYDLDQL 150
HTL + D++
Sbjct: 131 FHTFKDHTLLERDEV 145
>gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii]
gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii]
Length = 443
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN---------------V 59
K + WFR LR+HDNP+L + + ++ V++ DP G +
Sbjct: 42 KAALVWFRNDLRLHDNPALEQACRQSSSVLPVYVFDPRDYGKAGYSVCLLPQTPSGFDRT 101
Query: 60 GINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKL 99
G + RFLL+ + DL LR S L V G+P +L +L
Sbjct: 102 GPGRARFLLEAVADLRQRLRDAGSDLVVRLGRPEAVLKEL 141
>gi|145224666|ref|YP_001135344.1| deoxyribodipyrimidine photo-lyase [Mycobacterium gilvum PYR-GCK]
gi|145217152|gb|ABP46556.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
PYR-GCK]
Length = 449
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
V WFR+ LR+ D P+L + ++LDP + G + ++L L DL
Sbjct: 3 AVLWFRRDLRLADLPALVAAAEVDGDVLACYVLDPRLKATG--GSRRLQYLYDALRDL-- 58
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L+ RL + RG P +P L + + ED PFG RD+ + ++E+
Sbjct: 59 -RESLDGRLLITRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALG--DVEL 115
Query: 137 IARVSHTL 144
+A S L
Sbjct: 116 VATGSPYL 123
>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
sativa Japonica Group]
gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
Length = 459
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HD+ L + ++ VF+ DP G S G ++ +R FLL + DL
Sbjct: 123 WFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSVADL 182
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
LR L V G+P ++P+L + + + ++ + + I
Sbjct: 183 RRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKVSKAVEKEGI 242
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY LD L
Sbjct: 243 EVKYFWGSTLYHLDDL 258
>gi|407648061|ref|YP_006811820.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia brasiliensis ATCC
700358]
gi|407310945|gb|AFU04846.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia brasiliensis ATCC
700358]
Length = 441
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F + LR+ DNP L + + +F++D AG N+ RFL L +LD LR
Sbjct: 8 FTRDLRVRDNPVLTAAHREGASVVPLFVIDEAIAGGRFAAPNRARFLAAALGELDAELRA 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ +L V RG + + + +E + D + + R+Q +
Sbjct: 68 IGGKLVVRRGDVVEQVAAVAEEVHADSVHIAADVSGYSRRREQAL 112
>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
Length = 451
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HD+ L + ++ VF+ DP G S G ++ +R FLL + DL
Sbjct: 115 WFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSVADL 174
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
LR L V G+P ++P+L + + + ++ + + I
Sbjct: 175 RRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKVSKAVEKEGI 234
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY LD L
Sbjct: 235 EVKYFWGSTLYHLDDL 250
>gi|110825715|sp|Q38JU2.2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum]
Length = 577
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN------VGINKWRFLLQCL 71
+ WFR LR+ DN +L V+ +DP G+++ G + +F+++CL
Sbjct: 81 IVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECL 140
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT 105
DL NL K L + G+P DI+P L K +K
Sbjct: 141 NDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKA 174
>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN------VGINKWRFLLQCL 71
+ WFR LR+ DN +L + V+ +DP G+++ G + +FL++CL
Sbjct: 91 IVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGALRAQFLIECL 150
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
DL NL L + G+P +ILP L K ++ + ++ T E
Sbjct: 151 ADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKE-------------TCSEE 197
Query: 132 LNIEVIAR 139
LN+E + R
Sbjct: 198 LNVERLVR 205
>gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group]
Length = 547
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF-AGSSN------VGINKWRFLLQCLE 72
WFR LR+ DN ++ V+ +DP AGS++ G + +FL++CLE
Sbjct: 54 WFRNDLRVLDNEAVVRAWAASDAVFPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLE 113
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFK 101
DL NL K L + G+P DILP + K
Sbjct: 114 DLKRNLTKQGLDLLIRHGKPEDILPSIAK 142
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 62/135 (45%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + +F LD +V + +++ CL+ L
Sbjct: 8 ILFWHRRDLRISDNIGLAAARQQSPKVVGIFCLDRNILNRDDVAPARVTYMIGCLQKLSS 67
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R+ S+L +I+ P +PKL + + D EP+ K RD+++ ++ I+V
Sbjct: 68 RYREAGSQLLIIQDDPILGIPKLATAINAQAVFWNWDVEPYAKQRDRSVSNALQQAGIQV 127
Query: 137 IARVSHTLYDLDQLK 151
L+ D+++
Sbjct: 128 QNFWDQVLHAPDEIR 142
>gi|413955020|gb|AFW87669.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 578
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW-FAGSSNV------GINKWRFLLQC 70
V WFR LR+ DN +L V+ +DP FAGS++ G + +FL++C
Sbjct: 82 VVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAGSTHYFGFPKKGALRAQFLIEC 141
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
L DL +LRK L V G+P +ILP + K
Sbjct: 142 LGDLKQSLRKKGLDLLVRHGKPEEILPSIAK 172
>gi|392549764|ref|ZP_10296901.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas spongiae
UST010723-006]
Length = 452
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWRFLLQCLE 72
++WF LR+ DN +L LK V++LDP ++N +G ++ RF+L L+
Sbjct: 5 LYWFTHDLRLSDNSALEYALKNSEQIAFVYVLDPSTKIANNYHSQLLGDHQTRFILNALQ 64
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+L L+ L +L V+ G + + +E L E F K + + + ++
Sbjct: 65 ELADELQALGHQLIVLEGAAQSEVSEFIREHDINQLVVAEQVGEFEKRKLAELQSTHSKV 124
Query: 133 NIEVIARVSHTLYDLDQL 150
N + HTL+ Q+
Sbjct: 125 NFTQFWQ--HTLFSQHQI 140
>gi|392537198|ref|ZP_10284335.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas marina mano4]
Length = 436
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 15 KHMVHWFRKGLRMHDNPSLRE-GLKGCTTFRCVFILDP-WFAGSS----NVGINKWRFLL 68
K +++W + LR++DNP + L+ C VF+++P WF ++ G NK+ FL+
Sbjct: 3 KRILYWLQNDLRLNDNPIFSKLALQQCA-LDVVFVINPNWFKNTNYQQKQYGENKYTFLM 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +L L L V+ G+P +L + K+ + + E FG + I L
Sbjct: 62 QSLYELQQALIARGQTLHVLEGEPVSVLKQRIKDQHIDEVVYSEQ---FGVYEQREINLL 118
Query: 129 ---CRELNIEVIARVSHTLYDLDQL 150
C E ++ + TLY + L
Sbjct: 119 KAHCPE--VQFTGTLQDTLYQQNDL 141
>gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum]
Length = 375
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDI 76
+ WFR+ LR+ DNP+L + + F VFI P G G +++W +L Q L LD
Sbjct: 7 IVWFRRDLRIEDNPALAAAARDGSVF-PVFIWCPKEEGQFYPGRVSRW-WLKQSLAHLDQ 64
Query: 77 NLRKLNSRLFVIRGQPA-DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L ++L +I+ + L + + T + F +P VRD NI EL I
Sbjct: 65 SLKSLGAKLVLIKTDSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVELGIS 124
Query: 136 VIARVSHTLYD 146
V + LY+
Sbjct: 125 VKSYNGDLLYE 135
>gi|453053468|gb|EMF00932.1| deoxyribodipyrimidine photo-lyase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 454
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HDNP LR ++ +F++D A + N+ FL CL DLD LR
Sbjct: 8 FTSDLRLHDNPVLRAAVRAGDRVVPLFVVDSGVAAAGFAAPNRSAFLAGCLADLDEGLRA 67
Query: 81 LNSRLFVIRG 90
RL V RG
Sbjct: 68 RGGRLVVRRG 77
>gi|428213303|ref|YP_007086447.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
gi|428001684|gb|AFY82527.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
Length = 486
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA----GSSNVGINKWRFL 67
T + ++ W+R LR+HD+ L L+ ++ DP F+ G G + +FL
Sbjct: 2 TYQPIILWYRNDLRVHDHEPLYRALETHAPIVPIYCFDPRQFSKTAYGFPKTGPFRAQFL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ + +L +L+ L S L + G+P ILP++ + + + F ++ + +
Sbjct: 62 LESVANLRQSLQNLGSNLIIKIGKPEVILPQIAHQVNASAIYFHQEVTAEEIAVETALSQ 121
Query: 128 LCRELNIEVIARVSHTLYDLDQLKPD 153
+ LN+ + + HTLY D+L D
Sbjct: 122 GVKSLNVALKSFWGHTLYHCDRLPFD 147
>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
Length = 455
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
T H+V WFR+ LR+HD P+L + V+ILD G +G + +L LE
Sbjct: 2 TSPHIV-WFRQDLRLHDQPALLAAAEAGPVL-PVYILDDETPGDWKMGGAQRWWLHHSLE 59
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFG-KVRDQNIMTLC 129
L +L+ L SRL + RG+ ++L L KE + EP+ K D+ LC
Sbjct: 60 ALAKDLKALGSRLILRRGRAVEVLQALSKEAGAEAIHAIRHYEPWWRKAEDELGDRLC 117
>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
Length = 584
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN------VGINKWRFLLQCL 71
+ WFR LR+ DN +L + V+ +DP G+++ G + +FL++CL
Sbjct: 110 IVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGALRAQFLIECL 169
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
DL NL L + G+P +ILP L K ++ + ++ T E
Sbjct: 170 ADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKE-------------TCSEE 216
Query: 132 LNIEVIAR 139
LN+E + R
Sbjct: 217 LNVERLVR 224
>gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum]
Length = 189
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HDN L + V+ DP G S+ G +K +R FL++ + DL
Sbjct: 1 WFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADL 60
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
NL+ S L V G+P +L +L K + + + I + ++ +
Sbjct: 61 RKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGL 120
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY +D L
Sbjct: 121 EVKYFWGSTLYHVDDL 136
>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN-----KWRFLLQCLEDL 74
WFR LR+HD+ L + ++ VF+ DP G S G + + FLL + DL
Sbjct: 112 WFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDSVADL 171
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+LR L V G+P ++P+L + + + ++ + + +
Sbjct: 172 RRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDECRTEEKVSKAIEKEGV 231
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY LD L
Sbjct: 232 EVKYFWGSTLYHLDDL 247
>gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
Length = 433
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILD---PWFAGSSNVGINKWRFLLQCLEDL 74
+HWFR LR+ DNP++ + CV+++ PW VG + RFL + L++L
Sbjct: 4 LHWFRNDLRLRDNPAI-ASHTAADSLLCVYLMPKPRPW-CNLVGVGAQRERFLRESLQEL 61
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+ L + L V+ G P +LP L + T ++ P G + + L ++L +
Sbjct: 62 HLQLAEQGQALMVLEGSPELVLPDLVARFAITEVSTTFTP---GSQERKTLAYLDQKLPV 118
Query: 135 EVIARVSHTLYDLDQL 150
+ ++L++ L
Sbjct: 119 PLQVHRGNSLFEPSDL 134
>gi|225429814|ref|XP_002280771.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 549
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN------VGINKWRFLLQCL 71
+ WFR LR+ DN +L + V+ +DP G+++ G + +FL++CL
Sbjct: 54 IVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGALRAQFLIECL 113
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
DL NL L + G+P +ILP L K ++ + ++ T E
Sbjct: 114 ADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKE-------------TCSEE 160
Query: 132 LNIEVIAR 139
LN+E + R
Sbjct: 161 LNVERLVR 168
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 59/146 (40%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQC 70
+S + + WFR LRM D+P+L E C++ILD +G +L
Sbjct: 3 SSQNRPAIVWFRDDLRMADHPALHEAAASGWPLICLYILDDVTPALHPLGAAARWWLRGA 62
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L DL NL K L + G +LP+L K+ + + + +D I
Sbjct: 63 LADLRRNLEKQGGTLLTLSGSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLE 122
Query: 131 ELNIEVIARVSHTLYDLDQLKPDSRG 156
E EV A+ L D D ++ G
Sbjct: 123 EQECEVHAQWGTVLVDPDTVQTKQGG 148
>gi|398812431|ref|ZP_10571188.1| deoxyribodipyrimidine photolyase [Variovorax sp. CF313]
gi|398077948|gb|EJL68890.1| deoxyribodipyrimidine photolyase [Variovorax sp. CF313]
Length = 500
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 52/131 (39%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DN +L L+ C C F+ D + + F+ + L +L+ LR
Sbjct: 18 WFRRDLRVDDNAALYRALRACRQVVCAFVFDKAILDALPSVDRRVEFIRESLVELEAELR 77
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
L L V +P L +E + D EP RD + +
Sbjct: 78 TLGGGLVVRHAAAVQEIPALARELGVQAVFANRDDEPDALERDARVFGALANAGVAFHTY 137
Query: 140 VSHTLYDLDQL 150
T++D D++
Sbjct: 138 KDSTVFDRDEI 148
>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
Length = 447
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F + LR+HDNP L +F+LD A S + RFL + L DLD +LR+
Sbjct: 7 FTRDLRVHDNPMLTAAALAGEHTVPLFVLDAAMARSGFATGARERFLAESLADLDRSLRE 66
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
L RL V G P + + ++ E + D + + R+ + + E
Sbjct: 67 LGGRLVVRAGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALAE 117
>gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
Length = 436
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV-----GINKWRFLL 68
+K +++W + LR+ DNP L + + VF+++P + S+N G++K RFL+
Sbjct: 2 KKRILYWLQNDLRIDDNPILNDLSQQQCELDIVFVINPAWFKSNNYQQKPYGVHKQRFLM 61
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
Q L +L ++ L L ++ G P +L + E + + E G + I L
Sbjct: 62 QSLYELQESVLGLGQTLHILEGDPVRVLTQRINELGIDEVVYSEQ---IGVYEQRQITAL 118
Query: 129 CRELNIEVIARVSH-TLYDLDQL 150
+ V V TLY QL
Sbjct: 119 KSKCATVVFKSVMQDTLYQQQQL 141
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP ++ + ++L CL+ L
Sbjct: 5 ILFWHRRDLRIADNTGLAAAQRQSPKVVGVFCLDPDILERDDIAPARVTYMLGCLQALQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ G P ++ L + K + + D EP+ + RD+ I+ E I+
Sbjct: 65 RYIQAGSQLLILHGPPVVVIADLAEALKAKAVFWNWDVEPYSQKRDRTIINSLTEKGIQF 124
Query: 137 I 137
+
Sbjct: 125 L 125
>gi|406025137|ref|YP_006705438.1| deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432736|emb|CCM10018.1| Deoxyribodipyrimidine photo-lyase [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 476
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
W R+ LR+ DN L+ +FI D N + FL L L L
Sbjct: 8 WLRRNLRLQDNKPFAAALRHVDKVLPIFIFDTTILKQFPNPYDRRLSFLAHTLCLLHDAL 67
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
++L LFV G P +I+PKL + K + +ED EP RD+ +
Sbjct: 68 KRLEGSLFVFHGTPLEIIPKLVNDLKVEAIYADEDYEPANIERDRTL 114
>gi|381185982|ref|ZP_09893558.1| deoxyribodipyrimidine photo-lyase [Flavobacterium frigoris PS1]
gi|379652014|gb|EIA10573.1| deoxyribodipyrimidine photo-lyase [Flavobacterium frigoris PS1]
Length = 431
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ DN L + L+ +F+ D S ++ F+ L +++ L
Sbjct: 10 WFRRDLRLDDNVGLFQALQSNYPVIPLFVFDDLILDSLPKNDSRVSFIYDSLSEINDKLH 69
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
++ S L V +G+ A + L +E+ + F +D EP+ RD I L +EV
Sbjct: 70 EIGSSLLVKKGKTAAVWESLIEEYDVKEVFFNKDYEPYAIERDTVICEL-----LEVNKT 124
Query: 140 VSHTLYD 146
VS++ D
Sbjct: 125 VSYSFKD 131
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + F LDP + +V + ++L C+ L
Sbjct: 5 ILFWHRRDLRISDNLGLAAARERSPKVVGFFCLDPGILEADDVAPARVAYMLGCVAQLQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ + S L +++G P + +P+ + + D EP+ + RD + E IE+
Sbjct: 65 RYQAVGSELLILKGNPVEQIPQTASTLGAMAVYWNRDVEPYSRQRDNAVAAALTEKGIEM 124
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + ++L CL+ L
Sbjct: 5 ILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ ++ S+L +I+ PA L KL + + D EP + RD+++ E+ I+V
Sbjct: 65 DYQRGGSQLLIIQDNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEVGIKV 124
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+HD+ +L + V+I++ S+ VG + + LD L
Sbjct: 6 WFRRDLRLHDHAALHAAMLTGDPIIPVYIVEDSLCLSAAVGDKRLHAHFSAIAALDDALV 65
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+L RL + RG+P +L +L +E L F D P + RD EL EV++R
Sbjct: 66 QLGGRLLIRRGEPQQVLCQLAQETGAEKLFFNRDYTPDARKRD--------ELVSEVLSR 117
>gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces griseus XylebKG-1]
gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces griseus XylebKG-1]
Length = 455
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HDNP LR L+ +F+ D + N+ FL CL LD LR
Sbjct: 8 FTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNRLAFLADCLAALDAGLRH 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI----MTLCRELNI 134
RL V RG+ A + ++ +E + + R+Q I REL++
Sbjct: 68 RGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADTGRELHV 125
>gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 455
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HDNP LR L+ +F+ D + N+ FL CL LD LR
Sbjct: 8 FTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNRLAFLADCLAALDAGLRH 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI----MTLCRELNI 134
RL V RG+ A + ++ +E + + R+Q I REL++
Sbjct: 68 RGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADTGRELHV 125
>gi|404448769|ref|ZP_11013761.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
gi|403765493|gb|EJZ26371.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
Length = 489
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
EK V WF++ LR+ D+ +L++G + +F +P ++ WRF+LQ LED
Sbjct: 2 EKINVIWFKRDLRLQDHEALQKGTEAGLPLILIFCFEPSLVSAAQSDARHWRFVLQSLED 61
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKT-TCLTFEEDPEPFGKVRDQNIMTLCREL 132
++ L+ +++ V + ++ L K ++ + +E RD + + +E
Sbjct: 62 MNAKLQDYETKVHVFFKEVEEVFTLLLKFYQVHEVFSHQETGIGITYERDLRMASFFKEK 121
Query: 133 NI 134
I
Sbjct: 122 KI 123
>gi|381158412|ref|ZP_09867645.1| deoxyribodipyrimidine photolyase [Thiorhodovibrio sp. 970]
gi|380879770|gb|EIC21861.1| deoxyribodipyrimidine photolyase [Thiorhodovibrio sp. 970]
Length = 493
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFIL-----DPWFAGSSNVGINKWRFLLQCLEDL 74
WFR+ LR+ DNP+L L GC V++ PW G+++ N W L L+ L
Sbjct: 8 WFRRDLRLSDNPALMAALDGCERLLPVYLHAPDEEAPWSPGAAS---NWW--LHHSLQAL 62
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
D LR+ SRLF++RG L L + + EP RD I R I
Sbjct: 63 DACLRERGSRLFILRGDSLACLQALITATSARAVFWNRCYEPARIARDSFIKQQLRAQGI 122
>gi|392963663|ref|ZP_10329087.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
gi|387847626|emb|CCH51126.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
Length = 444
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQC 70
+TE + W R+ LR+HDN +L LK +F+ D + + F+ +
Sbjct: 6 TTEPISLVWLRRDLRLHDNAALYYALKSGRPVLPIFVYDRLILDQLEDRDDRRVEFIHRE 65
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
++ L L ++ S + G+P D+L ++ +E+ + D E + K RD + +
Sbjct: 66 IQQLQAQLHQMGSTIIARYGRPIDVLKQVVEEFAVADVYTNYDYEVYAKERDAVVKAMLA 125
Query: 131 ELNIEVIARVSHTLYDLDQL 150
E I ++D D++
Sbjct: 126 ERGIGFHTFKDQAIFDRDEV 145
>gi|302877366|ref|YP_003845930.1| deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
ES-2]
gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
ES-2]
Length = 473
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
WFR+ LR+ D+ +L LK CVF+ D + S+ + F+ L +L+ L
Sbjct: 10 WFRRDLRLDDHAALYHALKNSRAVHCVFVFDTVILDALSDKHDRRVEFIWHSLYELNALL 69
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF 117
++ S L ++ G P +++P L +E + + D EP
Sbjct: 70 QQHGSTLQILHGNPVELIPHLARELEVQAVFCNRDYEPL 108
>gi|356500345|ref|XP_003518993.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 428
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK--- 63
P+N + + V WFR LR+ DN L + V+ DP G S G +K
Sbjct: 81 PSNAAALRRAAVVWFRNDLRLLDNECLTAANNESLSVLPVYCFDPADYGKSASGFDKTGP 140
Query: 64 WR--FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
+R FL+ + DL NL+ S L V G+P +L +L K + +
Sbjct: 141 YRAAFLIDSVSDLRRNLQARGSDLVVRVGKPEAVLVELAKAVGADAVYAHREVSHDEAKA 200
Query: 122 DQNIMTLCRELNIEVIARVSHTLYDLDQL 150
++ + +E N+EV TLY +D L
Sbjct: 201 EERVEAAMKEENVEVKYFWGSTLYHVDDL 229
>gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW-FAGSSN------VGINKWRFLLQC 70
V WFR LR+ DN +L V+ +DP AG+++ G + +FL++C
Sbjct: 99 VVWFRSDLRVLDNEALARAWAASGAVLPVYCVDPRVLAGATHRFGFPKTGALRAQFLIEC 158
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
L DL NL+K L V G+P DILP++ K
Sbjct: 159 LGDLKQNLQKRGLDLLVRHGKPEDILPEIAK 189
>gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
Length = 434
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGINKWRFLLQCLEDLDINL 78
W R+ LR+ D+ +L LK VF+ D + + F+ LEDL L
Sbjct: 9 WLRRDLRLLDHAALYHALKSGNPVVPVFVFDTNILNDLDDKHDRRVTFIHDILEDLQEKL 68
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138
KL S L V G P +E+ + D EP+ RD +I + + NI
Sbjct: 69 SKLGSTLDVFYGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRDSDIAKILKAKNIHFHL 128
Query: 139 RVSHTLYDLDQLKPDS 154
H ++D ++ D+
Sbjct: 129 YKDHVIFDHSEVLKDN 144
>gi|374628763|ref|ZP_09701148.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
gi|373906876|gb|EHQ34980.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
Length = 476
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA-GSSNVGINKWRFLLQCLEDLDI 76
VH FR+ LR+ DN +L L+ V+I +P F+ + N+ + F+++ L +LD+
Sbjct: 10 VHIFRRDLRLDDNTALLNALERSERVIPVYIAEPEFSINNQNIPEVRHSFIIRSLNELDL 69
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
L++ SRL+ L L KE D P+ + RD
Sbjct: 70 ELKEKESRLYYFSDGTEKALEYLIKETGAEAFFANRDYSPYAQKRD 115
>gi|315444996|ref|YP_004077875.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
Spyr1]
gi|315263299|gb|ADU00041.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
Spyr1]
Length = 446
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L + ++LDP + G + ++L L DL
Sbjct: 3 WFRRDLRLADLPALVAAAEVDGDVLACYVLDPRLKATG--GSRRLQYLYDALRDL---RE 57
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
L+ RL + RG P +P L + + ED PFG RD+ + ++E++A
Sbjct: 58 SLDGRLLITRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALG--DVELVAT 115
Query: 140 VSHTL 144
S L
Sbjct: 116 GSPYL 120
>gi|411117034|ref|ZP_11389521.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713137|gb|EKQ70638.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 547
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 20 WFRKGLRMHDN-PSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINL 78
WFR+ LR+ D+ P R L+G VF+ D + FLLQ L LD L
Sbjct: 7 WFRRDLRIADHAPIYRAALRGAVI--PVFVFDRALLHHPETAPARVEFLLQALMSLDQEL 64
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP-FGKVRDQNIMTLCRELNIEV 136
R RL + G P +LP L +E + + D E +G+VRD + E +++
Sbjct: 65 RDRGGRLIIRSGDPVTVLPNLIRETEADGIYAHIDFERIYGRVRDARLNQALAEQGLKI 123
>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
Length = 436
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WFR+ LR+ DN L + L+G T +FI D + F+ +E L+ N
Sbjct: 7 VFWFRRDLRLEDNTGLLKALQGPTPVLPIFIFDTEILCQVPKNDARVNFIYNTIETLNTN 66
Query: 78 LRKLN-SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++K + S + + G+P +I L K+ + D EP RD I L +I
Sbjct: 67 IKKKHKSSIAIFHGKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKELLANNSISF 126
Query: 137 IARVSHTLYDLDQL 150
+++ +++
Sbjct: 127 HTYKDQVIFEKNEI 140
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + + VF LDP ++ + +++ CL+ L
Sbjct: 5 ILFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ ++ S+L +I+ PA L KL + + +D EP + RD+++ E+ I+V
Sbjct: 65 DYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGIKV 124
>gi|444380451|ref|ZP_21179584.1| Cryptochrome [Enterovibrio sp. AK16]
gi|443675478|gb|ELT82207.1| Cryptochrome [Enterovibrio sp. AK16]
Length = 496
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WF++ LR+ D+ L+ + ++I +P + WRF+ Q LEDL+ L
Sbjct: 16 WFKRDLRLTDHAPLQAAIASGLPVLLLYIFEPILLEDEHYSERHWRFVWQSLEDLNQQLA 75
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK-VRDQNIMTLCRELNIE 135
++ V+R + + L L ++K L E+ RD+ + C E I+
Sbjct: 76 PFGGKVLVVRSECIEALSSLHTQFKIKTLYSHEETGLMKTFTRDKEVGKWCEEHEID 132
>gi|374289278|ref|YP_005036363.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
SJ]
gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
SJ]
Length = 434
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 1/141 (0%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+K + WFR+ LR+ DN L L +FI D ++ F+ +CL++
Sbjct: 6 DKVSIFWFRRDLRVEDNIGLYHALNSSFPVLPIFIFDKNILNKLERDDSRVSFIHECLQN 65
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L RK + L P + ++F+ + + ED EP+ RD++I
Sbjct: 66 LSEKFRKYDGDLLTFYNSPKNAWKEIFESFDVQEVYTNEDYEPYALSRDKSIEDYLTRKG 125
Query: 134 IEVIARVSHTLYD-LDQLKPD 153
I+ + ++ D LK D
Sbjct: 126 IKFQSYKDQCIFSKFDILKKD 146
>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
Length = 477
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN----VGINKWRFLLQCLE 72
++ W R+ LR+ DN ++ ++ V++LDP + + FLL+ L
Sbjct: 6 VLFWHRRDLRLADNLGIQAAVEISPAVTGVYVLDPALIHPPQALPPMAPARLWFLLESLI 65
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L R SRL ++ G P +LP L + + + D EP+ + RD+ +
Sbjct: 66 ELQQRWRAAGSRLLILEGDPVQMLPPLAERLSAEAVVWNRDVEPYSRERDRQV 118
>gi|330448317|ref|ZP_08311965.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492508|dbj|GAA06462.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 491
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V W ++ LR+ D+ +L ++I++P + WRF+ Q L+D++
Sbjct: 6 VVWLKRDLRLSDHQALSVAANSDLPVMLIYIMEPMLLSDPHYSERHWRFIWQSLQDINHQ 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKV--RDQNIMTLCRELNIE 135
L +NS++F+ G + L KL + L F G RD NI C + I+
Sbjct: 66 LAGVNSQVFIFHGNAVECLDKLMHHFPINAL-FSHQEIGLGCTFERDLNIKAWCDKQQIQ 124
>gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
Length = 479
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ WFR+ LR+ D+P+L ++ VFILD A + KWR L LE
Sbjct: 10 IILWFRRDLRLSDHPALSAAMRTGRPIVPVFILDD--AVQALGAAPKWRLGLG-LEAFAK 66
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L ++ SRL + +G D+L L ++ + + EP RD I + IEV
Sbjct: 67 GLSQIGSRLILRQGAALDVLESLIRDTGAGTVFWSRGYEPVSIARDTRIKSALTGQGIEV 126
Query: 137 IARVSHTLYD 146
+ H L++
Sbjct: 127 RSFAGHLLFE 136
>gi|441508929|ref|ZP_20990851.1| deoxyribodipyrimidine photo-lyase [Gordonia aichiensis NBRC 108223]
gi|441446934|dbj|GAC48812.1| deoxyribodipyrimidine photo-lyase [Gordonia aichiensis NBRC 108223]
Length = 426
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 22 RKGLRMHDNPSLREGLKGCTTFRCV-FILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
R+ LR++D P+L E + V F+LDP SS G + FL L +LD K
Sbjct: 2 RRDLRLNDLPALGEAIGDNKRQVLVCFVLDPRLEKSS--GERRLAFLYDSLRELDA---K 56
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+ L V+RG+P + +P+L + ED PFG+ RD +
Sbjct: 57 LDGNLLVVRGRPDEEIPRLAAAVGAGSVHVSEDFSPFGRRRDAAV 101
>gi|294507095|ref|YP_003571153.1| deoxyribodipyrimidine photolyase [Salinibacter ruber M8]
gi|294343423|emb|CBH24201.1| Deoxyribodipyrimidine photolyase [Salinibacter ruber M8]
Length = 494
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Query: 6 TPTN--PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGI-- 61
TP++ P + + FR+ LR+ DN L + FI DP N
Sbjct: 23 TPSDARPGTVPDRSLFLFRRDLRLADNTGLARACRASDEVVPAFIFDPRQCDPDNNAFFS 82
Query: 62 -NKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKV 120
+ + FL++ L++L LR+ RLFV G PA IL +L + + D PF +
Sbjct: 83 EHAFAFLVRSLKELRRRLRERGGRLFVFEGDPAAILSELISAGDISAVHVNRDYTPFARR 142
Query: 121 RDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
RD + ++CRE + + L + ++++P G
Sbjct: 143 RDDQLRSVCREEGARFQSSNALLLTEPEEVQPSGGG 178
>gi|284033744|ref|YP_003383675.1| deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836]
gi|283813037|gb|ADB34876.1| Deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836]
Length = 437
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 18 VHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDP--WFAGSSNVGINKWRFLLQCLEDL 74
V WFR+ LR+ DNP+L + + G VF+LDP W A Q L L
Sbjct: 4 VMWFRRDLRLADNPALLDAVAAGDGRVAGVFVLDPALWDAAGDPR-------RAQLLSSL 56
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
++ +L V RG PA ++P+L E + D P+G RDQ +
Sbjct: 57 RSLSAAMDGKLVVRRGDPATVIPELAAELGAASVHVTTDYGPYGVRRDQAV 107
>gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
Length = 465
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+P+L + VFI D AG KWR L + D LR
Sbjct: 2 WFRRDLRLTDHPALSAAAQTGRPVIPVFIRDDAVAGLG--AAPKWRLGL-GIGAFDDALR 58
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+ +SRL + +G ++L L KE + + +P RD +I + ++E +
Sbjct: 59 EKSSRLILRKGDALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGADVEARSF 118
Query: 140 VSHTLYD 146
H +++
Sbjct: 119 GGHLMFE 125
>gi|448410083|ref|ZP_21575032.1| photolyase/cryptochrome [Halosimplex carlsbadense 2-9-1]
gi|445672363|gb|ELZ24939.1| photolyase/cryptochrome [Halosimplex carlsbadense 2-9-1]
Length = 461
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W ++ LR+ DN L VF+ D F +VG + FL++ + +L R
Sbjct: 5 WHQRDLRLRDNRGLATAAADGPVV-PVFVYDTDFL--EHVGARQRAFLMRGVRELHEAYR 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+ L V G+P+++LP++ E+ + + E P + R Q + +C I+ +A
Sbjct: 62 ERGGDLVVRTGRPSEVLPEVAAEFGADTVVYNEHYRPARRERQQLVEAVCDRTEIDTVAE 121
Query: 140 VSHTLYDLDQL 150
L D +L
Sbjct: 122 TDLVLVDPGRL 132
>gi|75322263|sp|Q651U1.1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group]
gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group]
Length = 582
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-------VGINKWRFLLQC 70
+ WFR LR+ DN ++ V+ +DP + S G + +FL++C
Sbjct: 87 IVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIEC 146
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
LEDL NL K L + G+P DILP + K
Sbjct: 147 LEDLKRNLTKQGLDLLIRHGKPEDILPSIAK 177
>gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
Length = 434
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++K + WFR+ LR+ DN E LKG +FI D + F+ + L+
Sbjct: 2 SKKVSIFWFRRDLRLDDNVGFLEALKGDYPVLPLFIFDKDILDKLPENDARVTFIFETLQ 61
Query: 73 DLDINLR-KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
++ L+ +S L + P + L K+++ + D EP+ K RD +I L +
Sbjct: 62 EMRKELQDDYDSSLAMFHDTPEKVFKSLVKDYQIQEVFTNRDYEPYAKERDTSIKELLSK 121
Query: 132 LNIEVIARVSHTLYDLDQL 150
NI +++ D++
Sbjct: 122 NNISFNTYKDQVIFEKDEV 140
>gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
ATCC 35937]
gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
ATCC 35937]
Length = 472
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 10/146 (6%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQC 70
+ + WFR+ LR+ DNP+LR L ++I P W G+++ WR +
Sbjct: 3 YAIVWFRRDLRLQDNPALRAALDAGHDPIPLYIDAPHEEGEWAPGAAS---RSWRH--RS 57
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L LD LR L S L + G A +L ++ + + + EP + RD I R
Sbjct: 58 LAALDDTLRALGSGLVIRAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRNLR 117
Query: 131 ELNIEVIARVSHTLYDLDQLKPDSRG 156
E IEV + + L++ QL G
Sbjct: 118 ERGIEVQSCNAALLFEPWQLSTQQGG 143
>gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
Length = 492
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF----AGSSNVGINKWRFLLQCLEDLD 75
W R+ LR+ DN L+ + V++LDP + + FL++ L +L
Sbjct: 9 WHRRDLRLADNTGLQAAVALGPAVTGVYVLDPSIITPPPQLPPMAPARLWFLVESLIELQ 68
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
R+ SRL V++G P +LP+L ++ + + D EP+ + RD+ + +
Sbjct: 69 ERWREAGSRLLVLQGDPLTLLPQLAALLDSSTVVWSRDVEPYARERDRGVAKALQ----- 123
Query: 136 VIARVSHTLYDLDQL 150
A L D DQL
Sbjct: 124 --ADGRQVLVDWDQL 136
>gi|414162215|ref|ZP_11418462.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
gi|410879995|gb|EKS27835.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
Length = 485
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---AGSSNVGINKWRFL 67
N++ + ++ WFR LR+ D+P+L + C++ILD G+ ++G +L
Sbjct: 2 NASTQPVIVWFRDNLRLSDHPALVAAREAGAALVCLYILDDTHTGKGGNRSLGAATQWWL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L LD +L+K L + +G ILP+L K+ + + + P R Q+
Sbjct: 62 ASSLRALDTDLKKRGQHLVLRKGDARAILPRLAKDTGALAVFWIDSEIPAEAARAQDTAE 121
Query: 128 LCRELNIE 135
E+ +E
Sbjct: 122 ALHEIGVE 129
>gi|343403561|dbj|BAK61603.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDI 76
+ WFR+ LR+ DNP+L K + V+I P G G +++W +L Q L LD
Sbjct: 7 IVWFRRDLRIEDNPALAAAAKEGSVL-PVYIWCPKEEGQFYPGRVSRW-WLKQSLAHLDQ 64
Query: 77 NLRKLNSRLFVIRGQP-ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L SRL +I+ L + K + T + F +P VRD NI E I
Sbjct: 65 SLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGIS 124
Query: 136 VIARVSHTLYD 146
V + LY+
Sbjct: 125 VQSYNGDLLYE 135
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 55/111 (49%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K ++ WFRK LR+ DN +L + ++I +P AG+ +G + +L LE L
Sbjct: 7 KPVILWFRKDLRLDDNQALTAAHRSGRPIIPLYIREPAAAGTGPLGAAQAWWLHHSLEAL 66
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ +L+KLN RL + G+ ++L KE + + +P G D I
Sbjct: 67 NRSLQKLNGRLVLASGEALEVLCAFIKESAAEAVFWNRRYDPAGISIDARI 117
>gi|443477859|ref|ZP_21067672.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
gi|443016926|gb|ELS31485.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
Length = 497
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRC----VFILDPWFAGSSNVGINK-----WR 65
+ ++ WFR LR+HD L + + DP+ G ++ G K +
Sbjct: 4 QKILVWFRNDLRLHDCEILSLAAEASKRMNAEVFPFYCFDPYHFGKTSFGFEKTGAFRAK 63
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FL++ + DL NLR LNS L V G+P ILP+L ++ T + ++ + ++ +
Sbjct: 64 FLIESVIDLRANLRSLNSDLIVRIGKPELILPELTQQLGLTSIYYQREIATEETSLERRL 123
Query: 126 MTLCRELNIEVIARVSHTLYDLDQL 150
++ + N++ TL D L
Sbjct: 124 HSIFTKQNVDFKGFWGKTLIHCDDL 148
>gi|343403557|dbj|BAK61601.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDI 76
+ WFR+ LR+ DNP+L K + V+I P G G +++W +L Q L LD
Sbjct: 7 IVWFRRDLRIEDNPALAAAAKEGSVL-PVYIWCPKEEGQFYPGRVSRW-WLKQSLAHLDQ 64
Query: 77 NLRKLNSRLFVIRGQP-ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L SRL +I+ L + K + T + F +P VRD NI E I
Sbjct: 65 SLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGIS 124
Query: 136 VIARVSHTLYD 146
V + LY+
Sbjct: 125 VQSYNGDLLYE 135
>gi|404444701|ref|ZP_11009854.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vaccae ATCC 25954]
gi|403653381|gb|EJZ08370.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vaccae ATCC 25954]
Length = 447
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 17 MVHWFRKGLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
V W R+ LR+ D P+LR G C ++LDP SS G + ++L L
Sbjct: 3 AVLWLRRDLRLADLPALRAAADTDGTGTEVLAC-YVLDPRLRASS--GPRRLQYLYDALR 59
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
D+ R L+ RL V G P +P L + + + +D PF + RD+ +
Sbjct: 60 DVH---RSLDGRLLVTEGDPRHRIPALAEAVGASSVHVSDDFTPFSRRRDEQVRAALG-- 114
Query: 133 NIEVIARVSHTL 144
++E++A S L
Sbjct: 115 DVELVATGSPYL 126
>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
Length = 577
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW-FAGSSN------VGINKWRFLLQC 70
V WFR LR+ DN +L V+ +DP FAGS++ G + +FL++C
Sbjct: 81 VVWFRNDLRVLDNEALLRAWSASEAVLPVYCVDPRVFAGSTHYFGFPKTGALRAQFLIEC 140
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
L DL LRK L V G+P +ILP + K
Sbjct: 141 LGDLKQILRKKGLDLLVRHGKPEEILPSIAK 171
>gi|343403555|dbj|BAK61600.1| cryptochrome2c [Glycine soja]
gi|343403559|dbj|BAK61602.1| cryptochrome2c [Glycine soja]
gi|343403563|dbj|BAK61604.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDI 76
+ WFR+ LR+ DNP+L K + V+I P G G +++W +L Q L LD
Sbjct: 7 IVWFRRDLRIEDNPALAAAAKEGSVL-PVYIWCPKEEGQFYPGRVSRW-WLKQSLAHLDQ 64
Query: 77 NLRKLNSRLFVIRGQP-ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L SRL +I+ L + K + T + F +P VRD NI E I
Sbjct: 65 SLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQGIS 124
Query: 136 VIARVSHTLYD 146
V + LY+
Sbjct: 125 VQSYNGDLLYE 135
>gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
Length = 446
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFI---LDPW---FAGSSNVGINKWRFLLQCL 71
++WF LR+HDNP L E K + C++ L P+ FA + G NK RFL + L
Sbjct: 7 LYWFTNELRIHDNPLLAEVDKAVSELICIYCYPKLPPFLTHFAQEAQFGQNKLRFLDESL 66
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
L+++L N RL V+ P + ++ T L + F V +Q+++ R
Sbjct: 67 HCLNLSLNARNQRLQVVDLLPYQAIKHAIEKLDVTHLYC----DAFSGVDEQDVIDKIRS 122
Query: 132 --LNIEVIARVSHTLYDLDQL 150
++ + R +L+ LD L
Sbjct: 123 DFPHLTICQREVRSLFALDDL 143
>gi|357112286|ref|XP_003557940.1| PREDICTED: blue-light photoreceptor PHR2-like [Brachypodium
distachyon]
Length = 447
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN-----KWRFLLQCLEDL 74
WFR LR+HD+ L + ++ VF+ DP G S G + + FLL + DL
Sbjct: 112 WFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADL 171
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+LR L V G+P ++P+L + + + + + ++ +
Sbjct: 172 RRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDECRTEDKVSQAIKKEGV 231
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY +D L
Sbjct: 232 EVKYFWGSTLYHMDDL 247
>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
Length = 441
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILD-----PWFAGSSNVGINKWRFLLQCLEDL 74
WF LR+HDNP+L E C C+F D P + +G + +FLL+ L DL
Sbjct: 8 WFNNDLRVHDNPALLEASLNCDRLICLFCYDTFWDKPTGFNAKPLGDKRRQFLLESLNDL 67
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEW 103
L +L V++G P I+ +L ++
Sbjct: 68 QHTLEARGQQLIVMKGDPVAIISELLSKY 96
>gi|392963931|ref|ZP_10329352.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
gi|387846826|emb|CCH51396.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
Length = 482
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFA-----GSSNVGINKWRFLL 68
K +++WFR LR+HDN + VF+ +P FA G GI + FLL
Sbjct: 3 KRILYWFRNDLRLHDNEGFARAVADADEVLPVFVFNPRLFAEVHNLGFKKTGIYRASFLL 62
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTL 128
+ + DL ++R L + G+PA+IL +L + + ++ + N+
Sbjct: 63 ESVADLRQSIRAKGGELIIRIGEPANILAELAESADVAAVYASKEVTQEETDAESNLSKR 122
Query: 129 CRELNIEVIARVSHTLYDLDQL 150
+ LNI++ TLY + L
Sbjct: 123 LKPLNIDLDLFWVATLYHVRDL 144
>gi|407940619|ref|YP_006856260.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
gi|407898413|gb|AFU47622.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
Length = 496
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 4 LSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK 63
++ P++P + WFR+ LR HD +L L C C F+ D + +
Sbjct: 1 MNMPSSPEPRYPRGLVWFRRDLRAHDQAALYHALTRCEQVFCAFVFDKHILDALPRADRR 60
Query: 64 WRFLLQCLEDLDINLRKLNSR----LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
F+ + L +LD LR+L+ + L V +D +P L + D EP
Sbjct: 61 VEFIRESLVELDDTLRELSGQERGGLIVWHAVASDAIPALVSALDVQAVFANHDDEPQAL 120
Query: 120 VRDQNIMT 127
RD+ + T
Sbjct: 121 DRDRLVRT 128
>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
Length = 434
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DN L E L +FI D + FL L++L
Sbjct: 7 IFWFRRDLRLEDNRGLCEALGAGRPVLPIFIFDSEILDGLPADDPRVTFLHDRLQELRSR 66
Query: 78 LRK-LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+++ S L + G+P +I +L +W + D EP+ + RD+ + E IE
Sbjct: 67 MQENQGSSLAIYHGKPLEIFKELASDWDVGQVFTNRDYEPYARDRDEQVGQWLSEQGIEF 126
Query: 137 IARVSHTLYDLDQLKPD 153
+++ D++ D
Sbjct: 127 HTFKDQVIFEKDEVVKD 143
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 20 WFRKGLRMHDNPSLREGLKG----CTTFRCVFILDPWFA----GSSNVGINKWRFLLQCL 71
WFR LR+HD+ L +G F C D F G + G + +FL++ +
Sbjct: 13 WFRNDLRIHDHAILARIAEGDYQRIIPFYC--FDDRQFQTTSFGFAKTGKYRAKFLIESV 70
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF-EEDPEPFGKVRDQNIMTLCR 130
DL +L+KL + L V +G P I+P + K++ T F +E E KV + I L +
Sbjct: 71 ADLRESLQKLGTDLIVRKGIPEQIIPDIAKQYNVTEFYFSQEATEEEIKVEKRLIKAL-K 129
Query: 131 ELNIEVIARVSHTLYDLDQL 150
+L+I+V + TLY D L
Sbjct: 130 QLHIQVKSCWQSTLYQPDDL 149
>gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 485
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V WF++ LR+HD+ +L + + ++IL+P ++ WRF+ + L+DL+
Sbjct: 3 VVWFKRDLRLHDHDALFKAISLGKPCLLLYILEPSLIEDTHYDDRHWRFVYESLQDLNKQ 62
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKT-TCLTFEEDPEPFGKVRDQNIMTLCRELNI-- 134
L RL VI+G+ D+L + + + T + +E RD+ I C+ +I
Sbjct: 63 LSPYGHRLTVIKGEALDVLQAIHQRHEIHTIFSHQEIGIARTFSRDRKIEYWCKNNSIVW 122
Query: 135 ------EVIARVSHTLY 145
V+ + H LY
Sbjct: 123 QQSPHGAVVRGLQHRLY 139
>gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum]
Length = 189
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HDN L + V+ DP G S+ G +K +R FL+ + DL
Sbjct: 1 WFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADL 60
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
NL+ S L V G+P +L +L K + + + I + ++ +
Sbjct: 61 RKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGL 120
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY +D L
Sbjct: 121 EVKYFWGSTLYHVDDL 136
>gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
Length = 479
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+HDNP+L + + VFI+DP + + FL + + +L R
Sbjct: 8 WHRRDLRVHDNPALWQASRTGGQVLAVFIVDPTIVERDDTAPARIYFLRESVLELQKAYR 67
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
+ RL V G+P L L + + F +D EP+ +
Sbjct: 68 TIGGRLAVRVGEPVQQLVALAQAVGAGAVYFNDDIEPYAR 107
>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
Length = 477
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN----KWRFLLQCLE 72
++ W R+ LR+ DN L + V++LDP + FL++ L
Sbjct: 6 VLFWHRRDLRLADNLGLVVAAQISPAVTGVYVLDPAVINPPPELPPMAPARLWFLIESLV 65
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+L R+ SRL V+ G P +LP++ ++ + + D EP+ + RD+ + +
Sbjct: 66 ELQQRWREAGSRLLVVEGDPVAVLPQVAQQISAEAVVWNRDVEPYARKRDRQVAKTLQAD 125
Query: 133 NIEVIARVSHTLYDLDQL 150
V+A D DQL
Sbjct: 126 GRRVVA-------DWDQL 136
>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
Length = 481
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ WFRK LR+ DNP+LR C++ILD G +G +L + L+ L
Sbjct: 15 VIVWFRKDLRIADNPALRHAADSGRPVVCLYILDE-TPGVRPMGAASLWWLDKSLKSLAQ 73
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
L KL +RL + +G AD+L L E T + + + RD I +E ++
Sbjct: 74 ELEKLGNRLVLRKGVAADVLDALIAETGATGVVWNRLYDKASVDRDATIKARLKEAGVD 132
>gi|419967476|ref|ZP_14483367.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus M213]
gi|414567138|gb|EKT77940.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus M213]
Length = 446
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L + +F+LD +S G + FL + L LD
Sbjct: 7 WFRRDLRLGDLPTLHTVAESGARALGLFVLDDRLLKTS--GGARRDFLFRSLAALD---D 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
+L+ RL V++G P D++P++ + + D P+G+ RD +
Sbjct: 62 QLDGRLLVVKGDPVDVVPRVATKVSAEEVHVSADYGPYGRERDAAVA 108
>gi|187927713|ref|YP_001898200.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
Length = 518
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 2 SPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVF-----ILDPWFAGS 56
+P P N + + + WFR+ LR D+ +L L+ C CVF ILD A
Sbjct: 5 APSRQPYNIGAHFQRGLVWFRRDLRHFDHAALHYALRHCREVYCVFVFDRDILDALLARG 64
Query: 57 SNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP 116
+ F+ +E+L LR+ L V+ P +P++ ++ + D EP
Sbjct: 65 LQAD-RRIEFIRASIEELRSALREAGGDLMVVHDHPRHAIPEIARKLNIEAVFANHDEEP 123
Query: 117 FGKVRDQNI 125
+ RD+ +
Sbjct: 124 SAQARDEAV 132
>gi|441518362|ref|ZP_21000085.1| deoxyribodipyrimidine photo-lyase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441454765|dbj|GAC58046.1| deoxyribodipyrimidine photo-lyase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 470
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D P+L VF+LD S G + FL CL LD +
Sbjct: 9 WFRRDLRLSDLPTLLAARDRTDAALAVFVLDETLLAPS--GRRRTAFLAGCLRALDAD-- 64
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
L RL ++ G+PA ++P++ + D P+G RD
Sbjct: 65 -LGGRLLIVAGRPAQVIPRVAAGIGAGSVHVSADFGPYGSTRD 106
>gi|440703964|ref|ZP_20884860.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
gi|440274432|gb|ELP62999.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
Length = 457
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HD+P LR L T +F+ DP G+ N+ FL CL DLD LR+
Sbjct: 8 FTADLRLHDHPPLRAALDDSRTVVPLFVRDPAVDGAGFAVPNRLAFLADCLHDLDTGLRE 67
Query: 81 LNSRLFVIRG 90
RL + G
Sbjct: 68 RGGRLVLRHG 77
>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
Length = 469
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLK-----GCTTFRCVFILDPWFA-----GSSNVGINKW 64
+ +V WFR LR+HDN + E + + V++ DP F G+ G ++
Sbjct: 8 QRLVLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGALKTGAHRA 67
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
+F+ +C+ DL L+ L S L V GQP +LP L +
Sbjct: 68 KFIQECVADLRQRLQGLGSDLVVAVGQPEQLLPALLE 104
>gi|451335740|ref|ZP_21906305.1| Deoxyribodipyrimidine photolyase [Amycolatopsis azurea DSM 43854]
gi|449421632|gb|EMD27039.1| Deoxyribodipyrimidine photolyase [Amycolatopsis azurea DSM 43854]
Length = 442
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+ +L E K +++LD S G + FL CL+ LD
Sbjct: 3 WFRRDLRLGDHAALLEASKHSKHVLALYVLDDALLKPS--GAPRVAFLHGCLKALD---D 57
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+L RL +++G P + + K + + D P+G+ RDQ + E +I
Sbjct: 58 QLGGRLMLVKGDPVEEVVKAARAIGAAAVHVSSDTGPYGRRRDQEVKKALAEHDI 112
>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
Length = 487
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGI---NKWRFLLQCLEDLDIN 77
+ LR+HD+P LR ++ +F+ DP G VG N+ FL CL DLD
Sbjct: 8 YTSDLRLHDHPPLRAAVREAEEVVPLFVRDP---GIKKVGFHAANRAAFLADCLGDLDAG 64
Query: 78 LRKLNSRLFVIRGQPADILPKL 99
LR+ RL V G PA ++ +L
Sbjct: 65 LRERGGRLVVRAGDPAQVVREL 86
>gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
Length = 455
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%)
Query: 25 LRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSR 84
LR+HD+P LR + +F+ DP + N+ FL CL LD LR+ R
Sbjct: 12 LRLHDHPPLRAATREAEEVVPLFVRDPGIEKAGFTAPNRAAFLADCLAGLDAGLRERGGR 71
Query: 85 LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
L V G P I+ +L + + + R + T E++
Sbjct: 72 LVVRAGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTALEGTGAELV 124
>gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22]
gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei
87.22]
Length = 453
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%)
Query: 25 LRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSR 84
LR+HD+P LR L G +F+ D G+ N+ FL CL DLD LR+ R
Sbjct: 12 LRLHDHPPLRAALDGSRQVVPLFVRDRDVTGAGFAAPNRLAFLADCLRDLDTGLRERGGR 71
Query: 85 LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
L V G + + K+ E + D + +
Sbjct: 72 LVVRSGDVVEEVCKVAAEADADEVHLAADVSAYAQ 106
>gi|92429530|gb|ABD93509.2| DNA photolyase protein [Nicotiana tomentosiformis]
Length = 170
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDLD 75
FR LR+HDN SL + V+ DP G S+ G +K +R FL++ + DL
Sbjct: 1 FRNDLRVHDNESLNAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLR 60
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN-IMTLCRELNI 134
NL+ S L V G+P +L +L K + + + +V+ ++ I ++ ++ +
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAV-YAHREVSYDEVKGEDKIESVMKDEGV 119
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY +D L
Sbjct: 120 EVKYFWGSTLYHVDDL 135
>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
Length = 475
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++HWFR+ LR+ DNP+L + ++ILD A +G +L L LD
Sbjct: 6 VIHWFRQDLRLSDNPALSAAVSQGDVLP-IYILDDKNANEFAMGGASRWWLHHSLTALDA 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+L + L + +G+P ++L +L + T + + EP+ RD+ I +E+ I+V
Sbjct: 65 SL---TACLNLYKGEPLEVLLELIERLDVTHVVWNRCYEPWRMQRDEKIKQTLKEIGIQV 121
Query: 137 IARVSHTLYDLDQL-KPD 153
+ + L++ Q+ KPD
Sbjct: 122 QSYNASLLWEPWQIKKPD 139
>gi|402819360|ref|ZP_10868928.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
gi|402511507|gb|EJW21768.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
Length = 474
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K +++WFR+ LR+ DNP+L T +FI DP ++G+ + Q L L
Sbjct: 3 KSVIYWFRQDLRLADNPALLHAAHSGKTVIPIFIFDP---DDRSLGMAASWWRQQSLAKL 59
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ L+K+ +L G+P ++L KL ++ + + + + RD+ I
Sbjct: 60 EAALKKIGGKLSFYEGRPVEVLQKLSDFYEADEIVWNRQYDGYSVSRDKEI 110
>gi|381399807|ref|ZP_09924825.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
gi|380772870|gb|EIC06556.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
Length = 448
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR LR+ DNP+LR + V +LD AG +G +L L +L LR
Sbjct: 9 WFRDDLRLADNPALRAAVDRGEPIIAVSVLDEQSAGVRPLGGAARWWLHHSLAELGERLR 68
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
+ S L + RG ++++P L +E + + + D + T R +EV +
Sbjct: 69 EKGSGLVLRRGAASEVIPSLAREVGAGAVFWNRRYSASEREVDAGLKTSLRAGGLEVSSF 128
Query: 140 VSHTLYD 146
+ L++
Sbjct: 129 AASLLFE 135
>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
Length = 469
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 48/106 (45%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+ +L L+ CVF+ D + F+ L +L L
Sbjct: 8 WFRRDLRLDDHAALYAALRHSERVVCVFVFDRDILKHLPAQDRRVDFIWHSLVELKEQLC 67
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L S L V+ G+P D +P L +E + + D EP +RD +
Sbjct: 68 ALGSDLVVVSGRPVDCIPALAQEHGASTVWASRDYEPAACLRDAAV 113
>gi|349573536|ref|ZP_08885514.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
gi|348014842|gb|EGY53708.1| deoxyribodipyrimidine photolyase [Neisseria shayeganii 871]
Length = 504
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+ D+ +L ++ VF+ D + F+ QCL+DL L
Sbjct: 34 WFRRDLRLDDHSALMAAVRAGRPLVGVFVFDRRILDPLPPDDRRLTFICQCLDDLAAQLA 93
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L L + G P ++LP+L + ED EP RD +
Sbjct: 94 ELGMPLHTVHGLPEEVLPELAARCGAAEVVCAEDYEPAAIDRDNRV 139
>gi|194334030|ref|YP_002015890.1| deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
Length = 477
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K ++ WFR+ LR+ DNP+L + V+ILD G+ +G +L L L
Sbjct: 4 KTVICWFRQDLRLEDNPALFVAAEEGYVL-PVYILDDSSPGTWQMGSATRCWLHHSLVSL 62
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+ R + +L + RG+P +IL L ++ K + + EP+ RDQ I + I
Sbjct: 63 N---RSFDGKLGIFRGEPLEILKTLARQHKAEKIVWNRCYEPWRMKRDQGIKATLQAEGI 119
Query: 135 EV 136
EV
Sbjct: 120 EV 121
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW---FAGSSNVGINKWRFLLQCLEDL 74
VHW R+ LR DN SL + + F+ DP +A V F+L+ L +L
Sbjct: 3 VHWHRRDLRAADNRSLSAAAETGSVI-PAFVFDPAVLEYASPPRVA-----FMLESLSEL 56
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
R+ S L V G P D LP++ +E +++ D RD+ + + +
Sbjct: 57 RAWYRERGSDLVVATGDPRDELPRIAREHDAESVSWNRDYSGLASKRDEAVREALTDAGL 116
Query: 135 EVIA 138
E +
Sbjct: 117 EATS 120
>gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
Length = 500
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Query: 3 PLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS-SNVGI 61
PLST P K ++ WFR+ LR HDN +L LK C CVF+ D + N
Sbjct: 10 PLSTQPKPGRYSKGLM-WFRRDLRTHDNAALFYALKHCEQVHCVFVYDKTILDALPNKAD 68
Query: 62 NKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
+ F+ + L L+ L ++ +P L + + +D EP R
Sbjct: 69 RRVEFIWESCMALKTKLQGFGGDLHLMYDHAETAIPDLATKLGVQAVFTNKDYEPAAIHR 128
Query: 122 DQNIMTLCRELNIEVIARVSHTLYDLDQL 150
D + + IE+ +++ D++
Sbjct: 129 DITVGKTLQGKGIELFRFKDQAIFEEDEV 157
>gi|379729344|ref|YP_005321540.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
gi|378574955|gb|AFC23956.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
Length = 466
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKW-----RFLL 68
K ++ WFR LR+HDN L E +K V++ D F G + G K +F++
Sbjct: 11 KRVIAWFRLDLRLHDNEMLTEAIKAGEEVYPVYVFDERTFGGKTESGFAKTGPRRCQFII 70
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL------TFEED 113
+ + DL L+ L L + RG+ + + KL +E KT + T+EE+
Sbjct: 71 EAVADLKQQLQALGIDLLIRRGKAEEEVFKLAQELKTGWVFCNREKTYEEE 121
>gi|425701283|gb|AFX92445.1| deoxyribodipyrimidine photolyase [Megavirus courdo11]
Length = 471
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV--GINKWRFLLQCLEDLD 75
+H FR+ LR+ DN SL L+ +FI P N N +F+++ L DL+
Sbjct: 9 IHIFRRDLRLEDNTSLLLALQESKYVIPLFIFTPTQVSEKNKLKSSNSIQFMIESLYDLN 68
Query: 76 --INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
IN RL+ G D++ ++ K + + +D P+ RD+ I C + N
Sbjct: 69 SQINFLDKKLRLWTTYGNEIDVIDEIHKNINVSAIYINDDYTPYSIKRDKKIQNYCDQQN 128
Query: 134 I 134
I
Sbjct: 129 I 129
>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
Length = 485
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS---SNVGINKWRFL 67
N+ + WFR LR+ D+ +L T C+++LD G ++G +L
Sbjct: 2 NAPAATAIVWFRDDLRLSDHAALIAARDAGATLICLYVLDDTETGKHGPRSLGAAAQWWL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L LD +L+KL L + RG ++LPKL +E + + + R +++
Sbjct: 62 ANSLRALDTDLKKLGQHLVLRRGDAHEVLPKLAREANAKAVFWIDSEVSAEAARARDVAE 121
Query: 128 LCRELNIEVIARVSHTL 144
+E+ +EV S L
Sbjct: 122 ALKEIGVEVHVSASDLL 138
>gi|337281072|ref|YP_004620544.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
[Ramlibacter tataouinensis TTB310]
gi|334732149|gb|AEG94525.1| Candidate deoxyribodipyrimidine photolyase (photoreactivating
enzyme) [Ramlibacter tataouinensis TTB310]
Length = 497
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR HDN +L LK C CVF+ D + + F+ + L +LD LR
Sbjct: 11 WFRRDLRSHDNAALFRALKACRQVHCVFVFDTGILDALPRQDRRVEFIRESLVELDAALR 70
Query: 80 KL----NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+ L V +P+L +E + D EP RD +
Sbjct: 71 AAAQDQGAGLIVRHAAARQEIPRLARELGVQAVFANHDYEPQALARDAAV 120
>gi|373488485|ref|ZP_09579149.1| Deoxyribodipyrimidine photo-lyase [Holophaga foetida DSM 6591]
gi|372005430|gb|EHP06066.1| Deoxyribodipyrimidine photo-lyase [Holophaga foetida DSM 6591]
Length = 464
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILD-PWFAGSSNVGINKWRFLLQCLEDLDINL 78
WFR+ LR+ D+ +L L CVF+ D P + + F+L + +LD L
Sbjct: 9 WFRRDLRVKDHAALHHALGRYGQVHCVFVFDAPILNALPSKEDRRVEFILGSVRELDREL 68
Query: 79 RKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ + R L V G +I+P+L E + D EP RD+ + L I
Sbjct: 69 AQPSGRSGLLVRHGDAREIIPRLALELGVREVVCARDYEPEAVRRDETVARALEGLGIAF 128
Query: 137 IARVSHTLYDLDQL 150
A +++ D++
Sbjct: 129 TALRDQVIFEADEI 142
>gi|325103845|ref|YP_004273499.1| deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
Length = 448
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR----FLLQCLEDLD 75
W R+ LR+ D +L LK T +FI D N+ NK+ F+ Q L D+
Sbjct: 23 WLRRDLRLDDQAALYHALKNETNVLPLFIFD---TTILNLLPNKFDRRVDFIHQVLSDMK 79
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
L +NS L V G P D+ +L + + D EP RD+++ L I
Sbjct: 80 KELDAINSSLLVEYGDPIDVFSELIDRFTIKAIYTNRDYEPTAIARDESVKKLVESKGI 138
>gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
Length = 493
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGIN----KWRFLLQCLEDLD 75
W R+ LR+ DN L+ + V +LDP + FL++ L +L
Sbjct: 9 WHRRDLRLADNTGLQAAVGLGPAVTGVVVLDPAILSPPPHLPPMAPARLWFLVESLIELQ 68
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
R+ SRL V+ G PA +LP+L + + D EP+ + RD+ +
Sbjct: 69 QRWREAGSRLLVVAGDPATVLPRLASLLDAPAVVWSRDVEPYARERDRAV 118
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K ++ W RK R+ DNP+L K V+I D + SS +KW +L L D
Sbjct: 3 KTIIVWIRKDFRLVDNPALFHAAKEGMVVP-VYIHDD-YEESSMGSASKW-WLHHALNDF 59
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+++K+ L V +G P D+L KL E + + EP RD+ + E I
Sbjct: 60 KTSIKKIEGTLIVQKGNPKDVLQKLLHETNAQDIYWNSRYEPHALKRDKELQAFFSEQQI 119
Query: 135 EV 136
+
Sbjct: 120 NI 121
>gi|424841446|ref|ZP_18266071.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
gi|395319644|gb|EJF52565.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
Length = 460
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKW-----RFLL 68
K ++ WFR LR+HDN L E +K V++ D F G + G K +F++
Sbjct: 9 KRVIAWFRLDLRLHDNEMLTEAIKASEEVYPVYVFDERTFGGKTESGFAKTGPRRCQFII 68
Query: 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL------TFEED 113
+ + DL L+ L L + RG+ + L +L +E KT + T+EE+
Sbjct: 69 EAVADLKQQLQTLGIDLIIRRGKAEEELFELAQELKTGWVFCNRERTYEEE 119
>gi|374608373|ref|ZP_09681172.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium tusciae JS617]
gi|373553905|gb|EHP80492.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium tusciae JS617]
Length = 430
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR+HD P+L + ++LDP SS G + ++L L D+D N
Sbjct: 6 WFRRDLRLHDLPALLDAAAADGEVLACYVLDPRLEASS--GRRRLQYLYDALRDVDDN-- 61
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
L RL V G P +P L K + + D PFG+ RD + + +E
Sbjct: 62 -LCGRLHVSHGHPEKRIPALAKAIGASAVHVSADYSPFGRRRDDAVRDAMAGVALEA 117
>gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367]
Length = 190
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HDN L + V+ DP G S+ G +K +R FL++ + DL
Sbjct: 2 WFRNDLRVHDNECLNAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVADL 61
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR-DQNIMTLCRELN 133
NL+ S L V G+P +L +L K + + + +V+ ++ I + ++
Sbjct: 62 KKNLQARGSDLVVRIGKPETVLVELAKAVGAEAV-YAHREVSYDEVKGEEKIEGVMKDEG 120
Query: 134 IEVIARVSHTLYDLDQL 150
++V TLY +D L
Sbjct: 121 VDVKFFWGSTLYHVDDL 137
>gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
gi|339490544|ref|YP_004705049.1| hypothetical protein LGMK_01830 [Leuconostoc sp. C2]
gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
gi|338852216|gb|AEJ30426.1| hypothetical protein LGMK_01830 [Leuconostoc sp. C2]
Length = 478
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
K V WFR+ LR+ DN +L ++ VF +D +N+ F ++ L
Sbjct: 3 KTSVMWFRRDLRVSDNIALAHAVENSDKILFVFHIDTQ-QLEKQPTVNQSSFFAS-VQQL 60
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKE---WKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
+L+K N L+V G+ D+ + K+ W+ L F D +G RDQ I C+E
Sbjct: 61 KKSLKKQNINLYVFYGELKDMFNHIKKQLPHWRD--LYFNRDEHGYGGERDQVITKYCQE 118
Query: 132 -LNIEVIARVSHTLYDLDQLK 151
LNI V A + + L+ +K
Sbjct: 119 KLNISVHATMDYNLHAAHDIK 139
>gi|449437082|ref|XP_004136321.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS------NVGINKWRFLLQCL 71
+ WFR LR+ DN +L + V+ +DP GS+ G + +F+++CL
Sbjct: 53 IVWFRNDLRVLDNEALNKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVECL 112
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFK 101
DL NL K L + G+P +ILP L K
Sbjct: 113 ADLKRNLTKRGLNLLIQHGKPEEILPSLAK 142
>gi|433639824|ref|YP_007285584.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
gi|433291628|gb|AGB17451.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
Length = 467
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHW R+ LR DN L + VF+ DP + + F+L L L
Sbjct: 3 VHWHRQDLRTADNRGL--SVAAADEALPVFVFDPDVLKDGSP--PRVAFMLDALARLRAR 58
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
R L S L V G PA+ +P+L E+ + + ED + RD+ + + +V
Sbjct: 59 YRDLESDLVVAWGDPAEAIPELVAEYGADGVVWNEDYTGLSRARDERVQEAITDAGGDV 117
>gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens]
Length = 526
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 1 MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF------- 53
MS L+ P + + W R LR+HDN L E V++LD
Sbjct: 1 MSALAATAKPTT-----IVWLRDELRVHDNALLAEAAARGGPVLPVYVLDDRVFDAAATS 55
Query: 54 --AGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKL 99
GS G + RF L+ L+DL L S L V RG+PAD+L L
Sbjct: 56 ESGGSRKCGAKRARFTLEALDDLRATLGARGSGLVVERGRPADVLAGL 103
>gi|449505505|ref|XP_004162492.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS------NVGINKWRFLLQCL 71
+ WFR LR+ DN +L + V+ +DP GS+ G + +F+++CL
Sbjct: 53 IVWFRNDLRVLDNEALNKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVECL 112
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFK 101
DL NL K L + G+P +ILP L K
Sbjct: 113 ADLKRNLTKRGLNLLIQHGKPEEILPSLAK 142
>gi|448546392|ref|ZP_21626556.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548379|ref|ZP_21627646.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557573|ref|ZP_21632762.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702845|gb|ELZ54785.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445714130|gb|ELZ65897.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714474|gb|ELZ66236.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 503
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW------FAGSSN-----VGI 61
+E + WFR+ LR+HDN + V+ +DP F G + G
Sbjct: 2 SESTSLAWFRRDLRLHDNAAFAAACGADRVVP-VYCVDPREYGDRPFGGPDSFDFEKTGA 60
Query: 62 NKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVR 121
++ RF L+ L DL +LR S L V G+P +LP+L +T P P
Sbjct: 61 HRARFRLESLADLRASLRDRGSDLVVREGRPESVLPELAAATDADFVTVHTRPTPEESRV 120
Query: 122 DQNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ + T R +E+ HTL LD L
Sbjct: 121 ESAVETELRGDGVELRRVWGHTLTHLDDL 149
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFL 67
+ K ++ W+R LR+HD+ L + +K + D +++ G K +FL
Sbjct: 2 SNKRILIWYRNDLRIHDHEPLYQAIKQGALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ + DL +L+ L S L + +G P I+P+L K+ + + F E+ + +
Sbjct: 62 LESVTDLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEK 121
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
+ LN+ TLY D L
Sbjct: 122 ALKPLNVTFKGFWGATLYHWDDL 144
>gi|427718644|ref|YP_007066638.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
gi|427351080|gb|AFY33804.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
Length = 495
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 55/123 (44%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +V + +++ CL+ L
Sbjct: 22 ILFWHRRDLRISDNTGLTAARRQSPKVVGVFCLDPHILERDDVAPVRVTYMIGCLQALQQ 81
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ P +P L + + + D EP+ + RD+ ++ +E I
Sbjct: 82 RYAEAGSQLLILHADPVVAIPALAEALNAKAVFWNWDVEPYSQERDRTVIDALKEQGIAF 141
Query: 137 IAR 139
+ +
Sbjct: 142 LQQ 144
>gi|97047673|sp|Q84KJ5.2|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
Length = 569
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCLED 73
WFR LR+ DN +L + T V+ LDP F G + FL++CL D
Sbjct: 89 WFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVD 148
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEW--------KTTCLTFEEDPEPFGKVRDQNI 125
L NL K L + G+P +ILP L K++ K TC + E D E ++ +Q +
Sbjct: 149 LRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDVE---RLVNQGL 204
Query: 126 MTLCRELNIEVIARVSHTLYDLDQLKPD 153
+ +E+I T+Y D L D
Sbjct: 205 KRVGNSTKLELIW--GSTMYHKDDLPFD 230
>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
Length = 525
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCL 71
+ WFR LR+ DN +L + T V+ LDP F G + FL++CL
Sbjct: 43 ILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECL 102
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEW--------KTTCLTFEEDPEPFGKVRDQ 123
DL NL K L + G+P +ILP L K++ K TC + E D E ++ +Q
Sbjct: 103 VDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDVE---RLVNQ 158
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPD 153
+ + +E+I T+Y D L D
Sbjct: 159 GLKRVGNSTKLELIW--GSTMYHKDDLPFD 186
>gi|220905687|ref|YP_002480998.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
Length = 475
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L + VF LDP +V + +++ L+ L
Sbjct: 5 ILFWHRRDLRIADNVGLAAARQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQHLQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ S+L ++ QP +P+L + + + D EP+ + RD+ + T + IEV
Sbjct: 65 QYVQSGSQLLILHQQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETVGIEV 124
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV-GINKWRFLLQCL 71
TE + WFR LR+ D+P+L +K +F+LD AG + G ++W +L + L
Sbjct: 5 TESATIVWFRNDLRLCDHPALTAAVKRGGPVIALFVLDDAAAGCWKLGGASRW-WLAKSL 63
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
E L ++ + +RL + RG IL +L E T + EP+ K
Sbjct: 64 EALSHDIAQRGARLILRRGDTESILKRLVDESGATAVYVTRGYEPWAK 111
>gi|389878514|ref|YP_006372079.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
gi|388529298|gb|AFK54495.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
Length = 489
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNV-------GINKWR 65
T++ ++ WFR+ LR+ DNP+L + + CV++ + +V G +W
Sbjct: 2 TDRPLIVWFRQDLRIADNPALHRASRSGSRLVCVYVHEDDDPAHDDVPAPRPLGGAARW- 60
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
+L + L LD +LR + RL +++G A +P L + + +P G RD+ I
Sbjct: 61 WLHRSLLALDADLRAIGGRLLLLKGPAAREIPALARRIGAGAVLINRVYDPEGAARDRAI 120
>gi|388567569|ref|ZP_10154000.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
gi|388265174|gb|EIK90733.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
Length = 496
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
WFR+ LR +DN +L L+ C CVF+ D + F+ + L LD LR
Sbjct: 10 WFRRDLRANDNAALHHALRHCRRLWCVFVFDREILDPLPRADRRVEFIRESLVALDARLR 69
Query: 80 KL-------NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
+L N+ L V+ + +P L + + D EP RD ++
Sbjct: 70 ELGAEHGQANTGLIVLHDRAQHAIPALAQRLGAQAVFANHDDEPAALTRDAQVL 123
>gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
91-118]
gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
91-118]
Length = 472
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 10/146 (6%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQC 70
+ + WFR+ LR+ DNP+LR L ++I P W G+++ WR +
Sbjct: 3 YAIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAAS---RTWRH--RS 57
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L LD LR L S L + G A +L ++ + + + EP + RD I R
Sbjct: 58 LAALDGALRALGSGLVIRSGNSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQIKRDLR 117
Query: 131 ELNIEVIARVSHTLYDLDQLKPDSRG 156
E IEV + + L++ QL G
Sbjct: 118 ERGIEVQSCNAALLFEPWQLSTQQGG 143
>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
Length = 483
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 67/147 (45%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
PN+ + WFRK LR+ DN +L L+ ++I +P G+ +G + +L
Sbjct: 2 PNAHPSPTILWFRKDLRLDDNRALLAALQAAGPVIPLYIREPEEMGTGPLGPAQAWWLHH 61
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L LD +L+ SRL + RG P +L L +E + + + +P G D +
Sbjct: 62 SLVSLDQSLQSYGSRLVLRRGPPGQVLRHLIEETGSKAVHWNRRYDPSGMAIDAELKAAL 121
Query: 130 RELNIEVIARVSHTLYDLDQLKPDSRG 156
R +E + L++ ++K S G
Sbjct: 122 RSDGLEATSHAGFLLHEPSKVKTGSGG 148
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFL 67
+ K ++ W+R LR+HD+ L + LK + D ++ G K +FL
Sbjct: 2 SNKRILIWYRNDLRLHDHEPLNKALKEKAEIIPFYCFDERQFRKTSYGFPKTGNFRAQFL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ L DL +L++ S L + +G P I+P+L +E K T + + ++ ++ + +
Sbjct: 62 LESLADLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYHQEVTAEELAVEKALES 121
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
++ ++ + TLY D L
Sbjct: 122 GLNKIRVKTESFWGATLYHPDNL 144
>gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
gi|72117822|gb|AAZ60085.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
Length = 525
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVF-----ILDPWFAGSSNVGINKWRFLLQCLEDL 74
WFR+ LR D+ +L LK C CVF ILDP A G + F+ L +L
Sbjct: 39 WFRRDLRSTDHAALHYALKHCREVWCVFVFDRDILDPLLARGLK-GDRRVDFIRASLIEL 97
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
D LR L V+ A +P L +E + D EP RD +
Sbjct: 98 DATLRAAGGGLIVMNDSAASAIPALARELGVQAVFANHDYEPDAVARDAAV 148
>gi|384427365|ref|YP_005636723.1| photolyase [Xanthomonas campestris pv. raphani 756C]
gi|341936466|gb|AEL06605.1| photolyase [Xanthomonas campestris pv. raphani 756C]
Length = 472
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQC 70
+ + WFR+ LR+ DNP+LR L ++I P W G+++ WR +
Sbjct: 3 YAIVWFRRDLRLEDNPALRAALDAGHDPIPLYIDAPHEEGQWAPGAAS---RAWRH--RS 57
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L LD +LR S L + +G A +L + + + + + EP + RD I R
Sbjct: 58 LAALDASLRARGSALLIRQGDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLR 117
Query: 131 ELNIEV 136
E +EV
Sbjct: 118 ERGLEV 123
>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
Length = 518
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 2 SPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVF-----ILDPWFAGS 56
+P P N + + + WFR+ LR D+ +L L+ C CVF ILD A
Sbjct: 5 APSRQPYNIGAHFQRGLVWFRRDLRHVDHAALHYALRHCREVYCVFVFDRDILDALLARG 64
Query: 57 SNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP 116
+ F+ +E+L LR+ L V+ P +P++ ++ + D EP
Sbjct: 65 LKAD-RRVEFIRASIEELRGALREAGGDLIVVHDHPRHAIPEIARQLNVEAVFANHDEEP 123
Query: 117 FGKVRDQNI 125
+ RD+ +
Sbjct: 124 SAQARDEAV 132
>gi|22327046|ref|NP_568461.2| cryptochrome DASH [Arabidopsis thaliana]
gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
Length = 526
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCL 71
+ WFR LR+ DN +L + T V+ LDP F G + FL++CL
Sbjct: 44 ILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECL 103
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEW--------KTTCLTFEEDPEPFGKVRDQ 123
DL NL K L + G+P +ILP L K++ K TC + E D E ++ +Q
Sbjct: 104 VDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDVE---RLVNQ 159
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPD 153
+ + +E+I T+Y D L D
Sbjct: 160 GLKRVGNSTKLELIW--GSTMYHKDDLPFD 187
>gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris]
Length = 641
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDI 76
+ WFR+ LR+ DNP+L + + F VFI P G G +++W +L Q L L+
Sbjct: 8 IVWFRRDLRIEDNPALAAAARNGSVF-PVFIWSPKEEGQFYPGRVSRW-WLKQSLIHLEQ 65
Query: 77 NLRKLNSRLFVIRGQPA-DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
+L+ L + L +I+ Q L + T + + +P VRD NI EL I
Sbjct: 66 SLKSLGAELVLIKAQSTLSALLDCIEAVGATKVVYNHLYDPVSLVRDHNIKQKLGELGIS 125
Query: 136 V 136
V
Sbjct: 126 V 126
>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCL 71
+ WFR LR+ DN +L + T V+ LDP F G + FL++CL
Sbjct: 44 ILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECL 103
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEW--------KTTCLTFEEDPEPFGKVRDQ 123
DL NL K L + G+P +ILP L K++ K TC + E D E ++ +Q
Sbjct: 104 VDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDVE---RLVNQ 159
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPD 153
+ + +E+I T+Y D L D
Sbjct: 160 GLKRVGNSTKLELIW--GSTMYHKDDLPFD 187
>gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Photobacterium angustum
S14]
gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Photobacterium angustum
S14]
Length = 491
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
V W ++ LR+ D+ +L ++I++P + WRF+ Q LED++
Sbjct: 6 VVWLKRDLRLTDHQALSVAANNDYPVMLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNHQ 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKV--RDQNIMTLCRELNIE 135
L +NS++F+ G + L KL L F G RD NI C + I+
Sbjct: 66 LACVNSQVFIFHGNAVECLDKLMHHCPINAL-FSHQEIGLGCTFERDLNIKAWCDKQQIQ 124
>gi|424869859|ref|ZP_18293539.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'C75']
gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum]
gi|387220321|gb|EIJ75034.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'C75']
Length = 536
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Query: 7 PTNPNSTEKHM--VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW 64
P P +E + + WFR LR+ DNP LRE + VFI +P G+S G W
Sbjct: 52 PKPPTKSEAFISSIVWFRNNLRLSDNPPLREAAERGPLL-PVFIGEP-SRGASPEGARHW 109
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
+ + L LD +L +L + L +RG PA +LP L K + E +P G+
Sbjct: 110 -WRARSLRCLDHSLSRLGAPLLFLRGDPAILLPDLATRLKIDKILAMEAIDPDGRRTQSR 168
Query: 125 IMTLCRELNIE 135
+ + +E
Sbjct: 169 LQSALSGKPVE 179
>gi|130157|sp|P12768.1|PHR_STRGR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|47083|emb|CAA33161.1| unnamed protein product [Streptomyces griseus]
Length = 455
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HDNP LR L+ +F+ D + N FL CL LD LR
Sbjct: 8 FTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNPLAFLADCLAALDAGLRH 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC----RELNI 134
RL V RG+ A + ++ +E + + R+Q I REL++
Sbjct: 68 RGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADSGRELHV 125
>gi|78047092|ref|YP_363267.1| photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 500
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 10/146 (6%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQC 70
+ + WFR+ LR+ DNP+LR L ++I P W G+++ WR +
Sbjct: 31 YAIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAAS---RTWRH--RS 85
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L LD LR L S L + G A +L ++ + + + EP + RD I R
Sbjct: 86 LAALDGALRALGSGLVIRSGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLR 145
Query: 131 ELNIEVIARVSHTLYDLDQLKPDSRG 156
E IEV + + L++ QL G
Sbjct: 146 ERGIEVQSCNAALLFEPWQLSTQQGG 171
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,634,915,825
Number of Sequences: 23463169
Number of extensions: 103110847
Number of successful extensions: 191640
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 1191
Number of HSP's that attempted gapping in prelim test: 189264
Number of HSP's gapped (non-prelim): 2312
length of query: 156
length of database: 8,064,228,071
effective HSP length: 118
effective length of query: 38
effective length of database: 9,590,541,425
effective search space: 364440574150
effective search space used: 364440574150
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)