BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6650
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + + V SHT+Y+
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYN 166
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + + V SHT+Y+
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYN 166
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11 NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
+S +VHWFRKGLR+HDNP+L G R +FILDP VG N+W
Sbjct: 25 DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84
Query: 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
RFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D EP+ RD
Sbjct: 85 RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+ L + + V SHT+Y+
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYN 166
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
Length = 537
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---------GSSNVGINKWRFLLQC 70
WFRKGLR+HDNP+L KG VF++DP + GSS G+N+ RFLL+
Sbjct: 10 WFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLES 69
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L+DLD +L+KL SRL V +G+P ++L + +EWK L FE D +P+ + D +
Sbjct: 70 LKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYAS 129
Query: 131 ELNIEVIARVSHTLYD 146
+EV + VSHTL++
Sbjct: 130 STGVEVFSPVSHTLFN 145
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+T V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLL 61
Query: 69 QCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+D+D L+ RL V G+PA I +L ++ + + E+D EP RD++I
Sbjct: 62 DSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121
Query: 126 MTLCRELNIEVIARVSHTLYD 146
+LCRELNI+ + +VSHTL+D
Sbjct: 122 RSLCRELNIDFVEKVSHTLWD 142
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 66.2 bits (160), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 66/134 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L +F LDP S+++ + +L CL++L
Sbjct: 4 ILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 63
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ SRL +++G P ++P+L ++ + + + +D EP+G+ RD + + I
Sbjct: 64 RYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRA 123
Query: 137 IARVSHTLYDLDQL 150
+ L+ DQ+
Sbjct: 124 VQLWDQLLHSPDQI 137
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
pdb|1QNF|A Chain A, Structure Of Photolyase
Length = 484
Score = 65.9 bits (159), Expect = 9e-12, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 66/134 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L +F LDP S+++ + +L CL++L
Sbjct: 5 ILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ SRL +++G P ++P+L ++ + + + +D EP+G+ RD + + I
Sbjct: 65 RYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRA 124
Query: 137 IARVSHTLYDLDQL 150
+ L+ DQ+
Sbjct: 125 VQLWDQLLHSPDQI 138
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
Tokodaii With Two Fad Molecules: Implication Of A Novel
Light-Harvesting Cofactor
Length = 440
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSNVGINKWRFLLQCLEDLDINLR 79
FR+ LR+ DN L L C VFI DP + F++ L +LD LR
Sbjct: 7 FRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELR 66
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139
K SRL V G+ ++ + F K + ED PF RD+ I +C E IE A
Sbjct: 67 KKGSRLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAY 124
Query: 140 VSHTL 144
+ L
Sbjct: 125 EDYLL 129
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HD+ L LK V+ DP ++ G K WR FL Q +++L
Sbjct: 11 WFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNL 70
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+L+K+ ++L V G P ++P++ K+ + + + ++N++ L I
Sbjct: 71 AESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGI 130
Query: 135 EVIARVSHTL 144
E TL
Sbjct: 131 EAKGYWGSTL 140
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
Length = 525
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCL 71
+ WFR LR+ DN +L + T V+ LDP F G + FL++CL
Sbjct: 43 ILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECL 102
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEW--------KTTCLTFEEDPEPFGKVRDQ 123
DL NL K L + G+P +ILP L K++ K TC + E D E ++ +Q
Sbjct: 103 VDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDVE---RLVNQ 158
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPD 153
+ + +E+I T+Y D L D
Sbjct: 159 GLKRVGNSTKLELIW--GSTMYHKDDLPFD 186
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
Length = 526
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCL 71
+ WFR LR+ DN +L + T V+ LDP F G + FL++CL
Sbjct: 44 ILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECL 103
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEW--------KTTCLTFEEDPEPFGKVRDQ 123
DL NL K L + G+P +ILP L K++ K TC + E D E ++ +Q
Sbjct: 104 VDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDVE---RLVNQ 159
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPD 153
+ + +E+I T+Y D L D
Sbjct: 160 GLKRVGNSTKLELIW--GSTMYHKDDLPFD 187
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCL 71
+ WFR LR+ DN +L + T V+ LDP F G + FL++CL
Sbjct: 44 ILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECL 103
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEW--------KTTCLTFEEDPEPFGKVRDQ 123
DL NL K L + G+P +ILP L K++ K TC + E D E ++ +Q
Sbjct: 104 VDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDVE---RLVNQ 159
Query: 124 NIMTLCRELNIEVIARVSHTLYDLDQLKPD 153
+ + +E+I T+Y D L D
Sbjct: 160 GLKRVGNSTKLELIW--GSTMYHKDDLPFD 187
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
Thermophilus
pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
Chromophore
pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
Length = 420
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR--FLLQCLEDLDIN 77
W R LR+HD+P+L E L V +LDP +N+ R + L+ + L
Sbjct: 7 WHRGDLRLHDHPALLEALARGPVVGLV-VLDP-----NNLKTTPRRRAWFLENVRALREA 60
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
R L+V+ G P + +P+ + K + P+G+ RD +
Sbjct: 61 YRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRV 108
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 37.7 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDINL 78
WFR+ LR+ DNP+L ++ +F+ P G + G +++W +L L LD +L
Sbjct: 17 WFRRDLRVEDNPALAAAVRAGPVI-ALFVWAPEEEGHYHPGRVSRW-WLKNSLAQLDSSL 74
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLT---FEEDPEPFGKVRDQNIMTLCRELNIE 135
R L + L R D + L K+T + F +P VRD + I
Sbjct: 75 RSLGTCLITKRS--TDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 132
Query: 136 VIARVSHTLYD 146
V + + LY+
Sbjct: 133 VRSFNADLLYE 143
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 17 MVHWFRKGLRMHDNPSL---REGLKGCTT-FRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
+V+W + R DN +L R K VF L F GI ++ F+L+ L+
Sbjct: 39 VVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFL---EAGIRQYEFMLKGLQ 95
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
+L+++L + F +RG P + + + K++ L + P
Sbjct: 96 ELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSP 137
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Query: 16 HMVHWFRKGLRMHDNPSL 33
H+V WFR+ LR+HDN +L
Sbjct: 3 HLV-WFRQDLRLHDNLAL 19
>pdb|3V08|A Chain A, Crystal Structure Of Equine Serum Albumin
pdb|4F5T|A Chain A, Crystal Structure Of Equine Serum Albumin
pdb|4F5U|A Chain A, Crystal Structure Of Equine Serum Albumin At 2.04
Resolution
Length = 583
Score = 26.9 bits (58), Expect = 4.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 96 LPKLFKEWKTTCLTFEEDPEPF 117
LPKL E C F+EDP+ F
Sbjct: 112 LPKLKPEPDAQCAAFQEDPDKF 133
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 125 IMTLCRELNIEVIARVSHTLYDLDQL 150
I LC L+ VIA V H L +L+Q+
Sbjct: 189 ICKLCASLDASVIATVKHNLEELEQV 214
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 125 IMTLCRELNIEVIARVSHTLYDLDQL 150
I LC L+ VIA V H L +L+Q+
Sbjct: 198 ICKLCASLDASVIATVKHNLEELEQV 223
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 26.6 bits (57), Expect = 6.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 125 IMTLCRELNIEVIARVSHTLYDLDQL 150
I LC L+ VIA V H L +L+Q+
Sbjct: 197 ICKLCASLDASVIATVKHNLEELEQV 222
>pdb|2LPY|A Chain A, Solution Structure Of The M-Pmv Myristoylated Matrix
Protein
Length = 124
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 51 PWFAGSSNVGINKWRFLLQCLED 73
PWF + I +WR + C +D
Sbjct: 42 PWFPQEGTIDIKRWRRVGDCFQD 64
>pdb|2F76|X Chain X, Solution Structure Of The M-Pmv Wild Type Matrix Protein
(P10)
Length = 100
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 51 PWFAGSSNVGINKWRFLLQCLED 73
PWF + I +WR + C +D
Sbjct: 43 PWFPQEGTIDIKRWRRVGDCFQD 65
>pdb|1BAX|A Chain A, Mason-Pfizer Monkey Virus Matrix Protein, Nmr, Average
Structure
Length = 94
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 51 PWFAGSSNVGINKWRFLLQCLED 73
PWF + I +WR + C +D
Sbjct: 43 PWFPQEGTIDIKRWRRVGDCFQD 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,998,014
Number of Sequences: 62578
Number of extensions: 193287
Number of successful extensions: 310
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 29
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)