BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6650
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+LRE ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 112/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRLFVIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 111/135 (82%)
Query: 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
+ VHWFRKGLR+HDNP+L+E ++G T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4 NAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
NLRKLNSRL VIRGQPAD+ P+LFKEW T L+ E D EPFGK RD I L E +E
Sbjct: 64 ANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 123
Query: 136 VIARVSHTLYDLDQL 150
VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 24 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 83
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 84 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 143
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 144 TENSHTLYDLDRI 156
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 24 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 83
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 84 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 143
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 144 TENSHTLYDLDRI 156
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 107/133 (80%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFRKGLR+HDNP+L ++G RCV+ILDPWFA SS+VGIN+WRFLLQ LEDLD +
Sbjct: 25 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTS 84
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQPAD+ P+LFKEW T LTFE D EPFGK RD IM + +E +EV+
Sbjct: 85 LRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVV 144
Query: 138 ARVSHTLYDLDQL 150
SHTLYDLD++
Sbjct: 145 TENSHTLYDLDRI 157
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 196 bits (497), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 106/133 (79%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
VHWFR+GLR+HDNP+L+ L+G + RC++ILDPWFA SS VGIN+WRFLLQ LEDLD +
Sbjct: 15 VHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNS 74
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
LRKLNSRLFV+RGQP D+ P+LFKEW T L FE D EPFGK RD I+ L +E +EV+
Sbjct: 75 LRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKEAGVEVV 134
Query: 138 ARVSHTLYDLDQL 150
SHTLY+LD++
Sbjct: 135 IENSHTLYNLDRI 147
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 12/157 (7%)
Query: 2 SPLSTPTNP---NSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFA---- 54
SP S NP +T + WFRKGLR+HDNP+L KG VF++DP +
Sbjct: 8 SPSSYRLNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDP 67
Query: 55 -----GSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109
GSS G+N+ RFLL+ L+DLD +L+KL SRL V +G+P ++L + +EWK L
Sbjct: 68 SAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLC 127
Query: 110 FEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYD 146
FE D +P+ + D + +EV + VSHTL++
Sbjct: 128 FEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFN 164
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 6/139 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLK----GCTTFRC--VFILDPWFAGSSNVGINKWRFLLQCL 71
+ WFR GLR+HDNPSL E L+ G + R +FI D AG+ VG N+ +FLL+ L
Sbjct: 6 ILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLESL 65
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
DLD LR++ +L+V +G +++ +LF+E L FE+D EP K RD I LCR
Sbjct: 66 ADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLCRM 125
Query: 132 LNIEVIARVSHTLYDLDQL 150
++++ + +VSHTL+D Q+
Sbjct: 126 MDVKCVEKVSHTLWDPQQI 144
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLL 68
+T V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLL 61
Query: 69 QCLEDLDINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L+D+D L+ RL V G+PA I +L ++ + + E+D EP RD++I
Sbjct: 62 DSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121
Query: 126 MTLCRELNIEVIARVSHTLYD 146
+LCRELNI+ + +VSHTL+D
Sbjct: 122 RSLCRELNIDFVEKVSHTLWD 142
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 76/137 (55%), Gaps = 8/137 (5%)
Query: 18 VHWFRKGLRMHDNPSLREGLKG--------CTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
+ WFR GLR+HDNPSL E LK +FI D AG+ VG N+ +FLL+
Sbjct: 6 ILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLLE 65
Query: 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC 129
L DLD R L +L V RG +L +LF+E L +E+D EP K RD + LC
Sbjct: 66 SLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCEPIWKERDDAVAKLC 125
Query: 130 RELNIEVIARVSHTLYD 146
R +++ + VSHTL++
Sbjct: 126 RTMDVRCVENVSHTLWN 142
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLK---GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
V WFR GLR+HDNP+L L+ VFI D AG+ +VG N+ RFLL L+DL
Sbjct: 8 VLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSLQDL 67
Query: 75 DINLRKLN---SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
D L+ RLFV G+P I +L ++ + + E D EP RD++ LCRE
Sbjct: 68 DEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAELDCEPIWNERDESARLLCRE 127
Query: 132 LNIEVIARVSHTLYD 146
L IE + +VSHTL+D
Sbjct: 128 LGIEYVEKVSHTLWD 142
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 20 WFRKGLRMHDNPSL--REGLKGCTTFRCVFILDPWF---------AGSSNVGINKWRFLL 68
WFRKGLR+HDNP+L VF+LDP + GS+ G+ + RFLL
Sbjct: 18 WFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFLL 77
Query: 69 QCLEDLDINLRKLNSRLFVIR----GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
+ L DLD LR+L SRL ++R G A + K+W L FE D EP+ RD+
Sbjct: 78 ESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDKK 137
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
+M I+V + VSHTL+D
Sbjct: 138 VMDFAAASGIDVFSPVSHTLFD 159
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 66/134 (49%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
++ W R+ LR+ DN L +F LDP S+++ + +L CL++L
Sbjct: 5 ILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64
Query: 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
++ SRL +++G P ++P+L ++ + + + +D EP+G+ RD + + I
Sbjct: 65 RYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRA 124
Query: 137 IARVSHTLYDLDQL 150
+ L+ DQ+
Sbjct: 125 VQLWDQLLHSPDQI 138
>sp|Q05380|YAT1_SYNP1 Uncharacterized 31.6 kDa protein in atpI 5'region OS=Synechococcus
sp. (strain PCC 6716) PE=4 SV=1
Length = 284
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLR 79
W R+ LR+ DN L + T VF DP +V + +LL CL+ L +
Sbjct: 9 WHRRDLRLADNLGLYAARQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQALKEAYQ 68
Query: 80 KLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
+ L +++G P ++P++ K T + + ED EP+ + RD+ + +L I V
Sbjct: 69 QRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDLGIAV 125
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK-----WRFLLQCLEDL 74
WFR LR+HDN L C + V+ DP G S+ G +K +FL++ + +L
Sbjct: 120 WFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSEL 179
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
NL+ S L V G+P +L +L KE + + + I T +E +
Sbjct: 180 RKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGV 239
Query: 135 EVIARVSHTLYDLDQL 150
EV TLY LD L
Sbjct: 240 EVKYFWGSTLYHLDDL 255
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKW-----RFL 67
+ K ++ W+R LR+HD+ L L ++ DP G + G K RFL
Sbjct: 2 STKTVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFL 61
Query: 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT 127
L+ + DL +LR+L S L V RG P +++P L E + + + + V ++++
Sbjct: 62 LESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQA 121
Query: 128 LCRELNIEVIARVSHTLYDLDQL 150
LN+ V + TL D L
Sbjct: 122 ALAPLNVPVRSFWGTTLVHPDDL 144
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 7 PTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRF 66
P + S ++ W R+ LR++D+ +L + + VF LD + ++ + +
Sbjct: 9 PMSDQSDHPLILLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAPARVAY 68
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIM 126
LL CL+ L + ++L S L V + P +LPKL +T+ D EP+ + RD +
Sbjct: 69 LLGCLQSLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVA 128
Query: 127 TLCRELNIEV 136
RE + +
Sbjct: 129 QALRERGLAI 138
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQCLE 72
V WFR LR+ DNP+L + + T V+ DP G G ++ F Q +
Sbjct: 5 VVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAVA 64
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DL +LR L V G+PA ++P+L + + + P + R ++ + +
Sbjct: 65 DLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDDA 124
Query: 133 NIEVIARVSHTLYDLDQL 150
I + R +HTLY D L
Sbjct: 125 GIALRQRWTHTLYHPDDL 142
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINK---WR--FLLQCLEDL 74
WFR LR+HD+ L LK V+ DP ++ G K WR FL Q +++L
Sbjct: 11 WFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNL 70
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134
+L+K+ ++L V G P ++P++ K+ + + + ++N++ L I
Sbjct: 71 AESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGI 130
Query: 135 EVIARVSHTL 144
E TL
Sbjct: 131 EAKGYWGSTL 140
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN------VGINKWRFLLQCL 71
+ WFR LR+ DN +L V+ +DP G+++ G + +F+++CL
Sbjct: 81 IVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECL 140
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT 105
DL NL K L + G+P DI+P L K +K
Sbjct: 141 NDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKA 174
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-------VGINKWRFLLQC 70
+ WFR LR+ DN ++ V+ +DP + S G + +FL++C
Sbjct: 87 IVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIEC 146
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFK 101
LEDL NL K L + G+P DILP + K
Sbjct: 147 LEDLKRNLTKQGLDLLIRHGKPEDILPSIAK 177
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSNVGINKWRFLLQCLED 73
WFR LR+ DN +L + T V+ LDP F G + FL++CL D
Sbjct: 89 WFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVD 148
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEW--------KTTCLTFEEDPEPFGKVRDQNI 125
L NL K L + G+P +ILP L K++ K TC + E D E ++ +Q +
Sbjct: 149 LRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETC-SEEVDVE---RLVNQGL 204
Query: 126 MTLCRELNIEVIARVSHTLYDLDQLKPD 153
+ +E+I T+Y D L D
Sbjct: 205 KRVGNSTKLELIW--GSTMYHKDDLPFD 230
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK 80
F LR+HDNP LR L+ +F+ D + N FL CL LD LR
Sbjct: 8 FTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNPLAFLADCLAALDAGLRH 67
Query: 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLC----RELNI 134
RL V RG+ A + ++ +E + + R+Q I REL++
Sbjct: 68 RGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADSGRELHV 125
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSS-----NVGINKWRFLLQCLEDL 74
R LR+HDN L + ++ DP + G+ G ++ +FLL+ + DL
Sbjct: 12 LRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDL 71
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKE-WKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
I L+K S L + RG+P +++ L K+ + +T E+ + + C L
Sbjct: 72 RITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRLG 131
Query: 134 IEVIARVSHTLYDLDQL 150
I+ TLY + L
Sbjct: 132 IKYQTFWGSTLYHREDL 148
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-WFAGSSN-----VGINKWR 65
S + ++ R LR+HDN + ++ DP + G+ + G + R
Sbjct: 2 SASRTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLR 61
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT-TCLTFEEDPEPFGKVRDQN 124
FLL ++DL L+K S L V +G+P D++ +L K+ + + + F E+ K ++
Sbjct: 62 FLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEK 121
Query: 125 IMTLCRELNIEVIARVSHTLYDLDQL 150
+ +C + + V TLY D L
Sbjct: 122 LKEICCQNKVRVQTFWGSTLYHRDDL 147
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRC--VFILDPWFAGSSNVGINK-----WRFLLQCLE 72
WFR LR D+ L+ T RC V +DP ++ +G + RFL++ L
Sbjct: 7 WFRNDLRTIDHEPF---LRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIENLT 63
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
DL LR L L V G+P +L L + F +P +++ LC +
Sbjct: 64 DLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQH 123
Query: 133 NIEVIARVSHTLYDLDQL 150
I TL D+L
Sbjct: 124 GIATHVAYGDTLIHPDEL 141
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCL 71
ST K + WFR+ LR+ DNP+L + F VFI P G G ++ Q L
Sbjct: 2 STNKKTIVWFRRDLRIEDNPALAAAAHEGSVFP-VFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 72 EDLDINLRKLNSRLFVIRGQP-ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130
L +L+ L S L +I+ + + T + F +P VRD +
Sbjct: 61 AHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 131 ELNIEV 136
E I V
Sbjct: 121 ERGISV 126
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 13 TEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFI---LDPW---FAGSSNVGINKWRF 66
++K ++WF LR++DNP L + + C++ + P+ +A + G K RF
Sbjct: 2 SKKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRF 61
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106
L Q L DLD +L L +L+V P L L + + T
Sbjct: 62 LNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEIT 101
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 2/134 (1%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
+K + WFR+ LR+ DNP+L + F VFI P G G ++ Q L
Sbjct: 4 DKKTIVWFRRDLRIEDNPALAAAAHEGSVFP-VFIWCPEEEGQFYPGRASRWWMKQSLAH 62
Query: 74 LDINLRKLNSRLFVIRGQPA-DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L +L+ L S L +I+ + + T + F +P VRD + E
Sbjct: 63 LSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVER 122
Query: 133 NIEVIARVSHTLYD 146
I V + LY+
Sbjct: 123 GISVQSYNGDLLYE 136
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR--FLLQCLEDL 74
++ W R LR+HD+P+L E L V +LDP +N+ R + L+ + L
Sbjct: 4 LLVWHRGDLRLHDHPALLEALARGPVVGLV-VLDP-----NNLKTTPRRRAWFLENVRAL 57
Query: 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
R L+V+ G P + +P+ + K + P+G+ RD +
Sbjct: 58 REAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSYTPYGRYRDAKV 108
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWR--FLLQCLEDLDIN 77
W R LR+HD+P+L E L V +LDP +N+ R + L+ + L
Sbjct: 7 WHRGDLRLHDHPALLEALARGPVVGLV-VLDP-----NNLKTTPRRRAWFLENVRALREA 60
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
R L+V+ G P + +P+ + K + P+G+ RD +
Sbjct: 61 YRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRV 108
>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=phr PE=3 SV=2
Length = 445
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFR----CVFILDPWFAGSSNVGINKWR 65
P+ ++V+W + +R H N +L ++ + + VF L F N +R
Sbjct: 15 PDLRGSYVVYWMQASVRSHWNHALEYAIETANSLKKPLIVVFGLTDDFP---NANSRHYR 71
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPK 98
FL++ L D+ NLR+ +L V R P +L K
Sbjct: 72 FLIEGLRDVRSNLRERGIQLVVERDSPPSVLLK 104
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 21 FRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQCLEDLD 75
FR LR+ DN +L E + T C F +P G +G +++ FL Q L+ L
Sbjct: 21 FRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQSLKQLR 80
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKE 102
L +L V+ G IL +L E
Sbjct: 81 TELEMRGQKLIVLTGTFDRILTELISE 107
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 17 MVHWFRKGLRMHDNPSLREGLKGCTTFR-----CVFILD-----PWFAGSSNVGINKWRF 66
+V WFR LR+ DN + + V++ D P G + G + +F
Sbjct: 6 VVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKF 65
Query: 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKL 99
L+C+ DL +LR L S L V G+ D++ +L
Sbjct: 66 TLECVGDLKTSLRALGSDLLVRCGKSRDVIAEL 98
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDINL 78
WFR+ LR+ DNP+L ++ +F+ P G + G +++W +L L LD +L
Sbjct: 17 WFRRDLRVEDNPALAAAVRAGPVI-ALFVWAPEEEGHYHPGRVSRW-WLKNSLAQLDSSL 74
Query: 79 RKLNSRLFVIRGQPADILPKLFKEWKTTCLT---FEEDPEPFGKVRDQNIMTLCRELNIE 135
R L + L R D + L K+T + F +P VRD + I
Sbjct: 75 RSLGTCLITKRS--TDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 132
Query: 136 VIARVSHTLYD 146
V + + LY+
Sbjct: 133 VRSFNADLLYE 143
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 17 MVHWFRKGLRMHDNPSL----REGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
+VHWF+ LR+HDN SL ++ + C+++L P + + F+L+ LE
Sbjct: 137 VVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLE 196
Query: 73 DLDINLRKLNSRLFV----IRGQPADILPKLFKEWKTTCL 108
L +L L L+V R + + +L K W + L
Sbjct: 197 VLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHL 236
>sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorous tridactylus GN=PHR
PE=2 SV=1
Length = 532
Score = 36.2 bits (82), Expect = 0.077, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 18 VHWFRKGLRMHDNPSL----REGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
V+W + R+ DN + R LK F L P F G++ I + F+L+ LE+
Sbjct: 100 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGAT---IRHYDFMLRGLEE 156
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFK 101
+ KL ++ G P D+LP +
Sbjct: 157 VAEECEKLCIPFHLLLGLPKDVLPAFVQ 184
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 36.2 bits (82), Expect = 0.095, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 37/75 (49%)
Query: 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
EK + W ++ LR+ D+ L+ L +++ +P G ++ WRF+ Q L+
Sbjct: 2 EKINLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61
Query: 74 LDINLRKLNSRLFVI 88
++ +L + + ++
Sbjct: 62 INRDLAQSKGEVLIV 76
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 20 WFRKGLRMHDNPSLREGLKGCTTF---------RCVFILDPWFAGSSNVGINKWRFLLQC 70
W R+ LR DN L G T VF D ++ + F+L
Sbjct: 5 WHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVL--AHAAPPRVAFMLDA 62
Query: 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
L L R L S L V G PA +LP + + T + + D RD +
Sbjct: 63 LAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDAGV 117
>sp|P58818|PHR_METTM Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=phr PE=1 SV=2
Length = 444
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 10 PNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFR----CVFILDPWFAGSSNVGINKWR 65
P K++++W + +R H N +L ++ + +F L F N +R
Sbjct: 15 PARDGKYVIYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDEF---PNANSRHYR 71
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQP 92
FL++ L D+ L K +RL V +P
Sbjct: 72 FLIEGLRDVGDALMKRGARLVVENERP 98
>sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius auratus GN=phr PE=2
SV=1
Length = 556
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 17 MVHWFRKGLRMHDNPSL----REGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLE 72
++W + R+ DN +L + L F L P + ++ ++ F+L+ L+
Sbjct: 110 FLYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDAT---YRQYAFMLKGLQ 166
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114
++ + L+ + ++ G+P LP ++WK + + +P
Sbjct: 167 EVAKECKSLDIQFHLLSGEPGQNLPSFVEKWKFGAVVTDFNP 208
>sp|Q12372|MMP1_YEAST S-methylmethionine permease 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MMP1 PE=1 SV=1
Length = 583
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 2 SPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGL 37
S LSTP+N + +++H F+ + +D+P+++EGL
Sbjct: 17 SVLSTPSNEGN---NLIHRFKNSFKRNDSPAIQEGL 49
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 20 WFRKGLRMHDNPSLREGLKGCT----TFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
WFR+ R+HD+ +L+ ++ + F LDP A V + + Q +
Sbjct: 11 WFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDPKTASVEPVHHD---YFFQTVMQFK 67
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF-GKVRDQ 123
L+ L++I G L KL + + + D G++RD+
Sbjct: 68 QMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGDGRLRDE 116
>sp|B2TP76|HPRK_CLOBB HPr kinase/phosphorylase OS=Clostridium botulinum (strain Eklund
17B / Type B) GN=hprK PE=3 SV=1
Length = 304
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 25/102 (24%)
Query: 59 VGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP-- 116
+G +W FL +D+ I +RK + ++ + TCL D EP
Sbjct: 53 IGKAEWSFL----QDMQIEVRKKRVKKYL--------------SFNITCLIISRDLEPHE 94
Query: 117 --FGKVRDQNIMTL-CRELNIEVIARVSHTLYDLDQLKPDSR 155
+ R NI L + + ++I+++ TLY D+L P++R
Sbjct: 95 EFIKEARKNNIWVLRSKSVTTKLISKI--TLYLADKLAPETR 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,339,663
Number of Sequences: 539616
Number of extensions: 2471070
Number of successful extensions: 4210
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4152
Number of HSP's gapped (non-prelim): 54
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)