Query psy6650
Match_columns 156
No_of_seqs 158 out of 1065
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 23:38:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 100.0 1.1E-37 3.7E-42 265.5 10.6 142 14-155 4-154 (537)
2 3tvs_A Cryptochrome-1; circadi 100.0 2.1E-37 7.3E-42 263.9 11.7 141 15-155 4-150 (538)
3 2j4d_A Cryptochrome 3, cryptoc 100.0 1.3E-34 4.3E-39 246.4 17.2 152 4-155 27-188 (525)
4 1owl_A Photolyase, deoxyribodi 100.0 2.2E-34 7.4E-39 242.9 16.1 142 15-156 3-144 (484)
5 1np7_A DNA photolyase; protein 100.0 3.3E-34 1.1E-38 242.0 16.5 141 15-155 6-151 (489)
6 3umv_A Deoxyribodipyrimidine p 100.0 2.4E-34 8.2E-39 243.6 15.3 141 13-155 36-182 (506)
7 2e0i_A 432AA long hypothetical 100.0 4.4E-34 1.5E-38 238.6 13.5 132 17-150 3-135 (440)
8 1u3d_A Cryptochrome 1 apoprote 100.0 1.7E-33 5.8E-38 238.7 16.9 142 14-156 11-153 (509)
9 1dnp_A DNA photolyase; DNA rep 100.0 3.5E-34 1.2E-38 240.9 11.3 139 16-156 2-145 (471)
10 2wq7_A RE11660P; lyase-DNA com 100.0 2.4E-33 8.1E-38 239.4 12.1 137 15-151 29-171 (543)
11 2j07_A Deoxyribodipyrimidine p 100.0 2.4E-31 8.1E-36 220.9 14.4 127 16-149 3-129 (420)
12 2xry_A Deoxyribodipyrimidine p 100.0 6.8E-31 2.3E-35 221.4 15.2 134 16-155 38-175 (482)
13 3zxs_A Cryptochrome B, rscryb; 99.0 9.4E-10 3.2E-14 93.1 7.4 126 17-152 17-151 (522)
14 3s3t_A Nucleotide-binding prot 95.8 0.096 3.3E-06 35.4 9.3 90 24-113 13-117 (146)
15 3fdx_A Putative filament prote 95.1 0.4 1.4E-05 32.0 10.5 85 29-113 16-115 (143)
16 3dlo_A Universal stress protei 95.0 0.51 1.7E-05 32.5 11.0 86 24-113 32-126 (155)
17 3hgm_A Universal stress protei 94.9 0.31 1.1E-05 32.7 9.6 85 29-113 15-119 (147)
18 3tnj_A Universal stress protei 94.8 0.56 1.9E-05 31.6 10.7 90 24-113 14-118 (150)
19 3fg9_A Protein of universal st 94.2 0.8 2.8E-05 31.1 10.5 86 28-113 29-128 (156)
20 2dum_A Hypothetical protein PH 93.6 0.43 1.5E-05 33.1 8.2 117 24-140 13-155 (170)
21 3rjz_A N-type ATP pyrophosphat 93.6 0.24 8.2E-06 37.7 7.2 98 31-138 19-121 (237)
22 1tq8_A Hypothetical protein RV 92.2 0.38 1.3E-05 33.5 6.2 117 24-140 25-157 (163)
23 2z08_A Universal stress protei 91.8 1.9 6.4E-05 28.5 9.3 82 29-113 15-108 (137)
24 3fvv_A Uncharacterized protein 90.7 2.1 7.3E-05 30.6 9.2 66 68-133 94-172 (232)
25 3mt0_A Uncharacterized protein 89.7 2.9 9.9E-05 31.5 9.5 111 30-140 155-275 (290)
26 3loq_A Universal stress protei 89.7 5.2 0.00018 30.0 12.1 104 24-140 178-289 (294)
27 3idf_A USP-like protein; unive 89.1 3.4 0.00012 27.1 9.7 82 30-113 15-110 (138)
28 1mjh_A Protein (ATP-binding do 88.2 1.7 5.9E-05 29.5 6.7 90 24-113 13-129 (162)
29 3u80_A 3-dehydroquinate dehydr 87.9 4.5 0.00015 28.5 8.5 84 69-153 29-119 (151)
30 3loq_A Universal stress protei 87.7 7.2 0.00025 29.2 12.0 112 29-142 35-163 (294)
31 3olq_A Universal stress protei 87.7 7.5 0.00026 29.4 14.0 118 30-147 177-311 (319)
32 1jmv_A USPA, universal stress 86.6 5 0.00017 26.3 9.5 110 28-140 14-137 (141)
33 1q77_A Hypothetical protein AQ 85.7 4.2 0.00014 26.7 7.4 89 24-113 12-118 (138)
34 3h75_A Periplasmic sugar-bindi 85.2 8.3 0.00028 29.5 9.9 73 65-142 17-95 (350)
35 3qk7_A Transcriptional regulat 84.5 9.8 0.00034 28.3 9.8 72 65-142 23-97 (294)
36 1h05_A 3-dehydroquinate dehydr 83.1 9.7 0.00033 26.6 8.6 78 73-154 35-115 (146)
37 1gqo_A Dehydroquinase; dehydra 82.8 10 0.00034 26.5 9.3 78 73-154 33-113 (143)
38 2gm3_A Unknown protein; AT3G01 82.6 3.6 0.00012 28.4 6.1 74 68-141 86-163 (175)
39 3kip_A 3-dehydroquinase, type 82.0 12 0.0004 26.8 8.8 71 79-153 55-129 (167)
40 3uhf_A Glutamate racemase; str 80.5 5.4 0.00018 30.7 6.9 61 45-108 52-114 (274)
41 3n07_A 3-deoxy-D-manno-octulos 80.4 4.3 0.00015 29.2 6.1 37 76-112 62-98 (195)
42 2uyg_A 3-dehydroquinate dehydr 80.1 13 0.00044 26.1 9.7 78 73-154 32-113 (149)
43 3gk0_A PNP synthase, pyridoxin 79.5 12 0.0004 29.0 8.3 74 69-143 142-224 (278)
44 3mn1_A Probable YRBI family ph 79.3 4.7 0.00016 28.5 5.9 39 74-112 54-92 (189)
45 2iel_A Hypothetical protein TT 78.9 12 0.00042 25.9 7.6 73 68-140 57-134 (138)
46 3n8k_A 3-dehydroquinate dehydr 78.9 14 0.00047 26.5 8.1 76 74-153 62-140 (172)
47 3mt0_A Uncharacterized protein 78.4 19 0.00063 26.9 9.4 104 24-140 15-127 (290)
48 3ij5_A 3-deoxy-D-manno-octulos 78.3 3 0.0001 30.4 4.7 39 74-112 84-122 (211)
49 3out_A Glutamate racemase; str 78.1 9.5 0.00032 29.1 7.6 62 45-109 35-99 (268)
50 1uqr_A 3-dehydroquinate dehydr 77.8 16 0.00054 25.8 10.2 78 73-154 34-114 (154)
51 3gv0_A Transcriptional regulat 77.7 15 0.00052 27.1 8.7 71 66-142 24-98 (288)
52 1m5w_A Pyridoxal phosphate bio 77.2 19 0.00063 27.3 8.7 75 69-144 114-197 (243)
53 3jy6_A Transcriptional regulat 76.2 20 0.00069 26.2 10.4 71 65-142 20-94 (276)
54 3l49_A ABC sugar (ribose) tran 75.6 21 0.00072 26.1 10.8 73 65-142 18-95 (291)
55 3ist_A Glutamate racemase; str 75.5 9.8 0.00034 29.0 7.1 62 45-109 33-96 (269)
56 3mmz_A Putative HAD family hyd 75.3 14 0.00047 25.6 7.4 38 74-112 47-84 (176)
57 3lwz_A 3-dehydroquinate dehydr 74.1 20 0.00069 25.2 9.6 76 74-153 41-119 (153)
58 2c4w_A 3-dehydroquinate dehydr 73.8 22 0.00076 25.5 9.5 78 73-154 42-125 (176)
59 3egc_A Putative ribose operon 73.4 14 0.00049 27.2 7.5 72 65-142 21-96 (291)
60 3k4h_A Putative transcriptiona 72.5 26 0.00088 25.6 9.2 72 65-142 26-101 (292)
61 4eze_A Haloacid dehalogenase-l 72.5 25 0.00084 27.1 8.8 43 70-112 183-225 (317)
62 3huu_A Transcription regulator 72.1 25 0.00084 26.1 8.6 73 65-143 40-116 (305)
63 1gtz_A 3-dehydroquinate dehydr 72.0 23 0.0008 25.0 9.4 78 73-154 39-120 (156)
64 3cis_A Uncharacterized protein 71.5 19 0.00067 27.0 7.9 87 24-113 179-276 (309)
65 3p96_A Phosphoserine phosphata 71.3 24 0.00083 28.0 8.8 42 70-111 260-301 (415)
66 3rot_A ABC sugar transporter, 71.2 29 0.00097 25.7 9.2 73 65-142 16-95 (297)
67 1nf2_A Phosphatase; structural 70.7 25 0.00087 25.8 8.3 74 70-145 24-111 (268)
68 3e61_A Putative transcriptiona 70.7 28 0.00095 25.3 9.0 71 65-142 21-95 (277)
69 2p9j_A Hypothetical protein AQ 70.6 21 0.00072 23.9 8.7 39 73-111 43-81 (162)
70 3nvb_A Uncharacterized protein 70.3 25 0.00084 28.4 8.5 63 66-134 256-326 (387)
71 2gzm_A Glutamate racemase; enz 69.7 22 0.00075 26.8 7.8 62 45-109 31-94 (267)
72 3hcw_A Maltose operon transcri 69.7 31 0.0011 25.5 9.3 72 65-142 25-100 (295)
73 2pq0_A Hypothetical conserved 69.0 30 0.001 25.0 8.6 68 76-143 30-108 (258)
74 3rfu_A Copper efflux ATPase; a 68.4 13 0.00045 32.5 7.0 61 76-141 564-624 (736)
75 3kzx_A HAD-superfamily hydrola 68.2 16 0.00056 25.6 6.5 45 70-114 107-155 (231)
76 3n28_A Phosphoserine phosphata 68.2 37 0.0013 25.9 9.0 42 70-111 182-223 (335)
77 3e8m_A Acylneuraminate cytidyl 67.9 22 0.00074 23.8 6.9 38 75-112 40-77 (164)
78 3nkl_A UDP-D-quinovosamine 4-d 67.6 18 0.00061 23.8 6.3 48 93-142 54-101 (141)
79 3ab8_A Putative uncharacterize 66.8 9.8 0.00034 27.9 5.2 111 29-141 13-149 (268)
80 4fe7_A Xylose operon regulator 66.4 17 0.00058 28.7 6.8 70 65-142 37-106 (412)
81 3ksm_A ABC-type sugar transpor 66.3 34 0.0012 24.6 9.3 74 65-142 13-93 (276)
82 3cis_A Uncharacterized protein 66.3 39 0.0013 25.3 9.0 113 28-142 31-162 (309)
83 3n1u_A Hydrolase, HAD superfam 66.3 22 0.00075 25.0 6.8 41 76-116 56-96 (191)
84 2lnd_A De novo designed protei 66.3 20 0.00067 22.7 5.6 63 68-133 37-103 (112)
85 2jfz_A Glutamate racemase; cel 65.8 39 0.0013 25.1 8.7 63 43-108 26-90 (255)
86 4gxt_A A conserved functionall 65.7 5.3 0.00018 32.1 3.7 39 67-105 222-260 (385)
87 3k9c_A Transcriptional regulat 65.3 38 0.0013 24.9 9.1 70 65-142 24-97 (289)
88 1vp8_A Hypothetical protein AF 65.1 4.8 0.00017 29.6 3.0 68 69-138 30-103 (201)
89 3l6u_A ABC-type sugar transpor 65.0 38 0.0013 24.7 10.1 73 65-142 21-98 (293)
90 3gkn_A Bacterioferritin comigr 64.5 17 0.00059 24.3 5.8 45 66-110 53-97 (163)
91 1sur_A PAPS reductase; assimil 64.4 36 0.0012 24.3 9.3 71 70-142 32-106 (215)
92 3dnp_A Stress response protein 64.1 40 0.0014 24.7 9.0 69 77-145 34-115 (290)
93 1k1e_A Deoxy-D-mannose-octulos 64.0 10 0.00034 26.3 4.6 38 74-111 43-80 (180)
94 3ab8_A Putative uncharacterize 63.6 29 0.001 25.2 7.3 75 24-112 162-242 (268)
95 3l8h_A Putative haloacid dehal 63.3 16 0.00054 24.9 5.5 43 68-110 29-88 (179)
96 3sd7_A Putative phosphatase; s 63.1 25 0.00087 24.8 6.8 64 71-135 115-182 (240)
97 2r8e_A 3-deoxy-D-manno-octulos 62.7 16 0.00056 25.4 5.5 40 74-113 61-100 (188)
98 3mpo_A Predicted hydrolase of 61.7 44 0.0015 24.3 9.6 70 76-145 32-117 (279)
99 1nrw_A Hypothetical protein, h 61.5 47 0.0016 24.6 9.1 70 76-145 31-113 (288)
100 1rkq_A Hypothetical protein YI 61.2 35 0.0012 25.3 7.4 67 77-143 33-116 (282)
101 3dbi_A Sugar-binding transcrip 60.8 51 0.0017 24.8 10.6 72 65-142 76-152 (338)
102 1pq4_A Periplasmic binding pro 60.8 46 0.0016 25.4 8.2 54 69-122 224-278 (291)
103 3o74_A Fructose transport syst 60.8 43 0.0015 24.0 9.2 72 65-142 15-91 (272)
104 2jfq_A Glutamate racemase; cel 60.7 34 0.0011 26.1 7.3 61 45-108 50-112 (286)
105 3olq_A Universal stress protei 60.6 50 0.0017 24.6 11.6 119 24-142 15-151 (319)
106 2yvq_A Carbamoyl-phosphate syn 60.5 37 0.0013 23.1 7.6 43 96-138 88-130 (143)
107 3v7e_A Ribosome-associated pro 60.5 23 0.00078 21.8 5.3 41 98-141 21-61 (82)
108 3mc1_A Predicted phosphatase, 60.4 22 0.00077 24.6 6.0 72 70-142 90-168 (226)
109 2nyv_A Pgpase, PGP, phosphogly 60.2 32 0.0011 24.2 6.8 44 70-113 87-134 (222)
110 3fzq_A Putative hydrolase; YP_ 60.1 28 0.00095 25.2 6.6 70 76-145 32-112 (274)
111 3lmz_A Putative sugar isomeras 60.0 35 0.0012 24.8 7.2 66 69-139 61-132 (257)
112 2nyt_A Probable C->U-editing e 59.9 46 0.0016 24.0 7.8 75 64-140 67-146 (190)
113 3m9w_A D-xylose-binding peripl 59.7 51 0.0017 24.4 8.9 72 66-142 16-92 (313)
114 3ixr_A Bacterioferritin comigr 59.4 18 0.00063 25.0 5.3 45 67-111 70-114 (179)
115 1zuw_A Glutamate racemase 1; ( 59.3 34 0.0012 25.8 7.1 61 45-108 31-94 (272)
116 3o6c_A PNP synthase, pyridoxin 58.6 52 0.0018 25.1 7.8 46 68-114 110-156 (260)
117 3m9l_A Hydrolase, haloacid deh 58.2 28 0.00095 24.0 6.1 36 70-105 74-109 (205)
118 8abp_A L-arabinose-binding pro 58.2 52 0.0018 24.1 9.7 73 65-142 15-91 (306)
119 3j08_A COPA, copper-exporting 57.6 10 0.00035 32.6 4.2 42 73-114 464-505 (645)
120 3tva_A Xylose isomerase domain 57.3 55 0.0019 24.1 9.1 71 68-138 50-157 (290)
121 3p6l_A Sugar phosphate isomera 56.1 53 0.0018 23.8 7.6 66 69-139 63-134 (262)
122 1b73_A Glutamate racemase; iso 56.0 43 0.0015 24.9 7.1 62 44-108 27-90 (254)
123 3tb6_A Arabinose metabolism tr 55.7 56 0.0019 23.7 8.3 75 66-142 29-108 (298)
124 4ex6_A ALNB; modified rossman 55.6 25 0.00085 24.7 5.5 44 71-114 109-156 (237)
125 1l7m_A Phosphoserine phosphata 55.6 45 0.0015 22.6 6.9 40 70-109 80-119 (211)
126 3bbl_A Regulatory protein of L 55.4 58 0.002 23.8 8.3 70 66-142 22-96 (287)
127 3gi1_A LBP, laminin-binding pr 55.4 55 0.0019 24.8 7.8 21 96-116 220-240 (286)
128 2dwu_A Glutamate racemase; iso 55.3 35 0.0012 25.8 6.6 61 45-108 35-97 (276)
129 3e3m_A Transcriptional regulat 55.2 67 0.0023 24.4 10.1 71 65-142 83-158 (355)
130 3kjx_A Transcriptional regulat 54.9 66 0.0023 24.3 8.4 69 66-141 82-155 (344)
131 1iv0_A Hypothetical protein; r 54.9 19 0.00065 23.1 4.3 48 94-142 41-94 (98)
132 1pq4_A Periplasmic binding pro 54.7 30 0.001 26.4 6.2 69 67-139 170-243 (291)
133 4fe3_A Cytosolic 5'-nucleotida 54.6 19 0.00063 27.1 4.9 37 70-106 145-181 (297)
134 3s6j_A Hydrolase, haloacid deh 53.9 32 0.0011 23.8 5.8 45 70-114 95-143 (233)
135 3drn_A Peroxiredoxin, bacterio 53.3 27 0.00091 23.4 5.2 46 66-111 47-92 (161)
136 3l12_A Putative glycerophospho 52.5 41 0.0014 25.7 6.7 55 72-136 258-312 (313)
137 2vvt_A Glutamate racemase; iso 52.3 67 0.0023 24.4 7.8 63 44-109 51-115 (290)
138 2ioj_A Hypothetical protein AF 52.2 49 0.0017 22.0 6.9 54 84-142 54-107 (139)
139 3uug_A Multiple sugar-binding 51.9 70 0.0024 23.7 10.6 72 66-142 17-93 (330)
140 2wm8_A MDP-1, magnesium-depend 51.9 45 0.0015 22.9 6.3 39 69-107 71-110 (187)
141 3d8u_A PURR transcriptional re 51.7 64 0.0022 23.2 8.8 71 65-142 16-91 (275)
142 2o8v_A Phosphoadenosine phosph 51.3 71 0.0024 23.6 9.1 70 70-141 33-106 (252)
143 3kke_A LACI family transcripti 51.3 71 0.0024 23.5 11.0 71 66-142 29-103 (303)
144 3j09_A COPA, copper-exporting 51.1 27 0.00092 30.4 5.9 42 73-114 542-583 (723)
145 1l6r_A Hypothetical protein TA 51.1 34 0.0012 24.7 5.7 32 76-107 32-63 (227)
146 4dw8_A Haloacid dehalogenase-l 51.0 68 0.0023 23.3 9.4 71 76-146 32-119 (279)
147 2wfc_A Peroxiredoxin 5, PRDX5; 50.8 54 0.0018 22.4 6.5 40 67-106 51-91 (167)
148 2oho_A Glutamate racemase; iso 50.5 57 0.0019 24.5 7.1 61 45-108 40-102 (273)
149 3um9_A Haloacid dehalogenase, 49.9 60 0.002 22.3 6.9 45 70-114 100-148 (230)
150 1t57_A Conserved protein MTH16 49.7 12 0.0004 27.7 2.8 67 69-138 38-110 (206)
151 3jvd_A Transcriptional regulat 49.6 40 0.0014 25.5 6.2 66 65-142 77-145 (333)
152 3kws_A Putative sugar isomeras 49.6 74 0.0025 23.3 7.9 71 69-139 64-165 (287)
153 2wem_A Glutaredoxin-related pr 49.6 32 0.0011 22.6 4.9 12 94-105 39-50 (118)
154 2fep_A Catabolite control prot 49.4 74 0.0025 23.2 11.0 71 65-142 29-104 (289)
155 2ioy_A Periplasmic sugar-bindi 48.7 75 0.0026 23.1 9.8 72 65-141 14-90 (283)
156 2hsz_A Novel predicted phospha 48.7 50 0.0017 23.5 6.3 43 71-113 119-165 (243)
157 2pib_A Phosphorylated carbohyd 48.5 32 0.0011 23.3 5.1 45 70-114 88-136 (216)
158 1toa_A Tromp-1, protein (perip 47.9 72 0.0025 24.6 7.4 21 96-116 238-258 (313)
159 2no4_A (S)-2-haloacid dehaloge 47.9 64 0.0022 22.6 6.8 45 70-114 109-157 (240)
160 2rgy_A Transcriptional regulat 47.3 80 0.0027 23.0 10.0 71 65-142 21-99 (290)
161 3clk_A Transcription regulator 47.2 72 0.0024 23.2 7.1 70 66-142 22-97 (290)
162 2ah5_A COG0546: predicted phos 47.2 68 0.0023 22.2 7.0 41 71-112 89-133 (210)
163 3skx_A Copper-exporting P-type 47.1 38 0.0013 24.4 5.5 42 70-111 148-189 (280)
164 3twe_A Alpha4H; unknown functi 46.8 13 0.00044 17.7 1.8 15 67-81 6-20 (27)
165 2inf_A URO-D, UPD, uroporphyri 46.8 55 0.0019 25.5 6.7 65 45-113 209-274 (359)
166 1nu0_A Hypothetical protein YQ 46.7 65 0.0022 21.9 6.2 50 93-142 42-97 (138)
167 3uma_A Hypothetical peroxiredo 46.6 57 0.0019 22.9 6.2 39 68-106 77-116 (184)
168 3ib6_A Uncharacterized protein 46.6 68 0.0023 22.0 8.2 47 67-113 35-88 (189)
169 3a1c_A Probable copper-exporti 46.5 86 0.003 23.2 8.0 42 71-112 168-209 (287)
170 3i8o_A KH domain-containing pr 46.4 69 0.0024 22.0 8.9 88 42-141 32-132 (142)
171 3cx3_A Lipoprotein; zinc-bindi 46.4 85 0.0029 23.6 7.5 38 67-108 157-199 (284)
172 2a4v_A Peroxiredoxin DOT5; yea 46.3 46 0.0016 22.1 5.5 45 66-111 53-97 (159)
173 3mng_A Peroxiredoxin-5, mitoch 46.3 40 0.0014 23.5 5.3 39 68-106 64-103 (173)
174 3h5o_A Transcriptional regulat 46.3 91 0.0031 23.4 9.0 69 66-141 76-149 (339)
175 3ble_A Citramalate synthase fr 46.3 1E+02 0.0035 24.0 9.6 120 16-142 91-224 (337)
176 2pr7_A Haloacid dehalogenase/e 46.2 16 0.00053 23.3 2.9 48 66-113 18-69 (137)
177 3g1w_A Sugar ABC transporter; 45.9 85 0.0029 22.9 9.2 72 66-142 18-95 (305)
178 1tp9_A Peroxiredoxin, PRX D (t 45.5 66 0.0023 21.5 7.3 38 68-105 56-94 (162)
179 3qc0_A Sugar isomerase; TIM ba 45.0 55 0.0019 23.7 6.1 72 68-139 44-142 (275)
180 3m1y_A Phosphoserine phosphata 44.8 72 0.0024 21.8 8.2 41 70-110 79-119 (217)
181 2prs_A High-affinity zinc upta 44.5 78 0.0027 23.8 7.0 23 67-89 154-181 (284)
182 1zun_A Sulfate adenylyltransfe 44.4 1.1E+02 0.0037 23.7 9.3 74 66-141 31-111 (325)
183 2hi0_A Putative phosphoglycola 44.2 44 0.0015 23.7 5.4 43 71-113 115-160 (240)
184 3ocu_A Lipoprotein E; hydrolas 43.9 56 0.0019 24.8 6.0 74 70-148 105-187 (262)
185 3hs3_A Ribose operon repressor 43.8 36 0.0012 24.9 4.9 67 65-142 23-94 (277)
186 3bil_A Probable LACI-family tr 43.7 1E+02 0.0035 23.3 9.8 71 65-142 79-154 (348)
187 3brq_A HTH-type transcriptiona 43.7 89 0.0031 22.5 9.4 70 66-142 35-110 (296)
188 1xvl_A Mn transporter, MNTC pr 43.4 1.1E+02 0.0038 23.6 8.0 13 67-79 182-194 (321)
189 2yj3_A Copper-transporting ATP 49.4 5 0.00017 30.0 0.0 46 67-112 137-182 (263)
190 4as2_A Phosphorylcholine phosp 42.9 18 0.00062 28.3 3.2 43 68-110 145-193 (327)
191 3q8k_A Flap endonuclease 1; he 42.9 30 0.001 27.2 4.5 42 68-109 134-175 (341)
192 1a76_A Flap endonuclease-1 pro 42.7 31 0.0011 26.8 4.5 41 70-110 131-171 (326)
193 1ul1_X Flap endonuclease-1; pr 42.3 29 0.001 27.7 4.4 41 70-110 136-176 (379)
194 2o2x_A Hypothetical protein; s 42.0 41 0.0014 23.8 4.8 42 69-110 59-117 (218)
195 2goy_A Adenosine phosphosulfat 41.9 74 0.0025 23.9 6.5 67 73-141 45-114 (275)
196 1yx1_A Hypothetical protein PA 41.5 90 0.0031 22.6 6.9 67 71-138 53-130 (264)
197 1vhx_A Putative holliday junct 41.5 61 0.0021 22.3 5.5 23 98-120 84-106 (150)
198 3p9n_A Possible methyltransfer 41.4 82 0.0028 21.5 6.8 71 70-141 79-155 (189)
199 3obk_A Delta-aminolevulinic ac 41.3 23 0.0008 28.2 3.5 76 14-91 13-95 (356)
200 2iks_A DNA-binding transcripti 41.2 1E+02 0.0034 22.4 9.2 72 65-142 33-109 (293)
201 3zyw_A Glutaredoxin-3; metal b 41.1 46 0.0016 21.3 4.6 49 94-145 35-83 (111)
202 3o1i_D Periplasmic protein TOR 41.0 1E+02 0.0034 22.4 7.5 72 65-142 18-96 (304)
203 3ewi_A N-acylneuraminate cytid 41.0 39 0.0013 23.5 4.5 50 76-134 46-97 (168)
204 1b43_A Protein (FEN-1); nuclea 40.9 37 0.0013 26.5 4.8 44 68-111 129-172 (340)
205 2b30_A Pvivax hypothetical pro 40.6 72 0.0025 23.9 6.3 62 78-139 57-138 (301)
206 3pct_A Class C acid phosphatas 40.5 89 0.003 23.6 6.7 73 70-147 105-186 (260)
207 3iht_A S-adenosyl-L-methionine 40.4 80 0.0027 22.5 5.9 43 88-130 88-130 (174)
208 3brs_A Periplasmic binding pro 40.3 1E+02 0.0035 22.2 7.1 73 65-142 20-99 (289)
209 3dxy_A TRNA (guanine-N(7)-)-me 39.8 40 0.0014 24.3 4.5 42 70-111 70-112 (218)
210 1nm3_A Protein HI0572; hybrid, 39.3 72 0.0025 22.9 5.9 39 68-106 54-93 (241)
211 4eek_A Beta-phosphoglucomutase 39.2 33 0.0011 24.5 4.0 45 71-115 115-164 (259)
212 3ory_A Flap endonuclease 1; hy 39.1 37 0.0013 27.0 4.5 42 71-113 146-187 (363)
213 2rbk_A Putative uncharacterize 39.0 48 0.0017 24.0 5.0 66 76-142 30-110 (261)
214 4f82_A Thioredoxin reductase; 38.8 81 0.0028 22.3 5.9 39 68-106 68-107 (176)
215 3dao_A Putative phosphatse; st 38.5 1.1E+02 0.0039 22.3 8.6 66 77-145 50-132 (283)
216 2rjo_A Twin-arginine transloca 38.4 1.2E+02 0.0041 22.5 9.5 73 65-142 18-97 (332)
217 3n6q_A YGHZ aldo-keto reductas 38.3 1.1E+02 0.0037 23.6 7.1 42 99-140 181-223 (346)
218 2hsg_A Glucose-resistance amyl 38.3 1.2E+02 0.0042 22.5 8.1 71 66-142 74-148 (332)
219 1ws6_A Methyltransferase; stru 38.0 42 0.0014 22.2 4.2 71 71-141 76-149 (171)
220 3ujp_A Mn transporter subunit; 37.9 1.4E+02 0.0047 23.0 8.8 69 67-140 168-246 (307)
221 2izo_A FEN1, flap structure-sp 37.9 40 0.0014 26.4 4.5 43 69-112 127-169 (346)
222 3dx5_A Uncharacterized protein 37.8 1.2E+02 0.0039 22.1 9.5 72 68-139 47-142 (286)
223 1n8j_A AHPC, alkyl hydroperoxi 37.4 61 0.0021 22.4 5.1 37 67-103 49-85 (186)
224 1nnl_A L-3-phosphoserine phosp 37.4 53 0.0018 22.8 4.8 37 70-106 90-126 (225)
225 3kbb_A Phosphorylated carbohyd 36.9 53 0.0018 22.6 4.7 45 70-114 88-136 (216)
226 3vni_A Xylose isomerase domain 36.6 20 0.00069 26.6 2.5 14 95-108 51-64 (294)
227 4dgh_A Sulfate permease family 36.6 55 0.0019 21.3 4.5 83 15-105 20-102 (130)
228 3erp_A Putative oxidoreductase 36.4 12 0.00041 29.4 1.2 39 102-140 205-243 (353)
229 1xvi_A MPGP, YEDP, putative ma 36.0 45 0.0015 24.6 4.4 35 68-106 32-66 (275)
230 1mhs_A Proton pump, plasma mem 36.0 1.2E+02 0.004 27.3 7.7 37 70-106 539-575 (920)
231 2hoq_A Putative HAD-hydrolase 35.9 99 0.0034 21.6 6.1 45 70-114 98-146 (241)
232 2q02_A Putative cytoplasmic pr 35.9 1.2E+02 0.0041 21.8 8.7 70 69-138 51-138 (272)
233 2h0a_A TTHA0807, transcription 35.8 65 0.0022 23.1 5.2 71 65-142 12-87 (276)
234 3hh8_A Metal ABC transporter s 35.8 1.4E+02 0.0049 22.6 7.8 21 96-116 224-244 (294)
235 2zg6_A Putative uncharacterize 35.4 69 0.0024 22.2 5.2 45 69-114 98-146 (220)
236 3ar4_A Sarcoplasmic/endoplasmi 35.3 2.2E+02 0.0076 25.5 9.4 36 71-106 608-643 (995)
237 3gyb_A Transcriptional regulat 35.3 97 0.0033 22.2 6.1 66 66-142 19-88 (280)
238 2ipq_X Hypothetical protein ST 35.0 12 0.00041 25.8 0.9 71 60-135 8-82 (135)
239 2wul_A Glutaredoxin related pr 34.7 74 0.0025 21.0 4.8 12 93-104 10-21 (118)
240 2x7x_A Sensor protein; transfe 34.7 1.4E+02 0.0048 22.1 10.5 73 65-142 18-96 (325)
241 3gbc_A Pyrazinamidase/nicotina 34.4 1.2E+02 0.004 21.2 6.4 64 73-137 115-183 (186)
242 3zy2_A Putative GDP-fucose pro 34.4 48 0.0017 26.5 4.4 42 95-140 270-311 (362)
243 1mzw_B U4/U6 snRNP 60KDA prote 34.4 18 0.00063 18.3 1.3 27 74-100 2-28 (31)
244 2hcf_A Hydrolase, haloacid deh 34.3 1.1E+02 0.0038 20.9 6.9 37 70-106 97-134 (234)
245 1zrn_A L-2-haloacid dehalogena 34.3 1.1E+02 0.0039 21.0 8.2 45 70-114 99-147 (232)
246 4a17_F RPL7A, 60S ribosomal pr 33.9 1.4E+02 0.0048 22.7 6.7 54 84-141 122-175 (255)
247 3jyw_G 60S ribosomal protein L 33.9 41 0.0014 22.2 3.4 42 70-111 29-75 (113)
248 2pwj_A Mitochondrial peroxired 33.9 77 0.0026 21.6 5.1 38 68-105 64-102 (171)
249 3ngf_A AP endonuclease, family 33.5 1.4E+02 0.0046 21.7 8.8 42 71-112 50-114 (269)
250 2vup_A Glutathione peroxidase- 33.5 1.1E+02 0.0036 21.0 5.8 41 66-106 65-114 (190)
251 2o1e_A YCDH; alpha-beta protei 33.4 1.3E+02 0.0043 23.1 6.7 13 67-79 170-182 (312)
252 3qe9_Y Exonuclease 1; exonucle 33.4 70 0.0024 25.2 5.3 40 71-110 130-169 (352)
253 3kd3_A Phosphoserine phosphohy 33.3 1.1E+02 0.0037 20.5 7.9 37 70-106 86-122 (219)
254 3f7j_A YVGN protein; aldo-keto 33.3 1.2E+02 0.0039 22.7 6.4 46 93-140 145-190 (276)
255 1tjy_A Sugar transport protein 33.3 1.5E+02 0.005 22.0 9.3 73 65-142 16-94 (316)
256 3o0k_A Aldo/keto reductase; ss 33.2 1.3E+02 0.0043 22.7 6.6 46 93-140 166-211 (283)
257 3krb_A Aldose reductase; ssgci 33.1 1.3E+02 0.0045 23.1 6.8 66 69-140 159-225 (334)
258 3up8_A Putative 2,5-diketo-D-g 32.8 1.6E+02 0.0055 22.3 7.5 49 90-140 159-207 (298)
259 2o20_A Catabolite control prot 32.5 1.5E+02 0.0053 22.0 10.4 71 65-142 76-151 (332)
260 2dri_A D-ribose-binding protei 32.4 1.4E+02 0.0047 21.4 8.3 73 65-142 14-91 (271)
261 1yns_A E-1 enzyme; hydrolase f 32.2 1.4E+02 0.0049 21.6 6.7 34 69-102 133-166 (261)
262 2fvy_A D-galactose-binding per 32.1 1.4E+02 0.0049 21.6 10.6 73 65-142 15-93 (309)
263 3r4c_A Hydrolase, haloacid deh 32.1 1.2E+02 0.0041 21.7 6.2 68 77-145 41-120 (268)
264 3o3m_B Beta subunit 2-hydroxya 31.8 1.2E+02 0.0041 24.0 6.5 116 15-142 229-352 (385)
265 2i6x_A Hydrolase, haloacid deh 31.5 1.2E+02 0.0041 20.5 6.1 44 69-113 92-145 (211)
266 2l5o_A Putative thioredoxin; s 31.3 1E+02 0.0034 19.8 5.2 42 66-107 45-88 (153)
267 1mi3_A Xylose reductase, XR; a 31.0 1.7E+02 0.0057 22.3 7.0 60 79-140 158-218 (322)
268 3raz_A Thioredoxin-related pro 31.0 61 0.0021 21.1 4.0 43 66-108 41-83 (151)
269 1exn_A 5'-exonuclease, 5'-nucl 30.7 82 0.0028 24.2 5.1 50 65-114 97-153 (290)
270 4a5z_A MITD1, MIT domain-conta 30.6 63 0.0022 22.9 4.1 36 119-155 87-122 (163)
271 2fi1_A Hydrolase, haloacid deh 30.4 1.2E+02 0.0041 20.0 5.7 72 69-142 85-161 (190)
272 3lwa_A Secreted thiol-disulfid 30.3 1.2E+02 0.0043 20.3 6.0 43 65-107 75-125 (183)
273 2l82_A Designed protein OR32; 30.2 95 0.0032 20.7 4.6 51 87-141 7-60 (162)
274 3v0s_A Perakine reductase; AKR 30.2 1.1E+02 0.0037 23.6 5.9 49 90-140 157-205 (337)
275 3d6j_A Putative haloacid dehal 30.2 1.3E+02 0.0043 20.3 6.0 43 71-113 94-140 (225)
276 4a5z_A MITD1, MIT domain-conta 30.1 71 0.0024 22.6 4.3 28 65-92 84-111 (163)
277 1rxw_A Flap structure-specific 30.0 82 0.0028 24.4 5.1 42 70-112 130-171 (336)
278 1wr8_A Phosphoglycolate phosph 29.9 1.1E+02 0.0038 21.6 5.6 30 77-106 31-60 (231)
279 3b3e_A YVGN protein; aldo-keto 29.8 1.4E+02 0.0047 22.9 6.4 17 123-139 207-223 (310)
280 1hw6_A 2,5-diketo-D-gluconic a 29.8 1.6E+02 0.0054 22.0 6.6 49 90-140 140-188 (278)
281 3umb_A Dehalogenase-like hydro 29.7 1.4E+02 0.0046 20.5 6.4 45 70-114 103-151 (233)
282 3lor_A Thiol-disulfide isomera 29.6 79 0.0027 20.5 4.5 59 42-107 31-96 (160)
283 1vlj_A NADH-dependent butanol 29.6 1.9E+02 0.0064 22.9 7.3 65 71-136 31-104 (407)
284 3v7q_A Probable ribosomal prot 29.4 1.1E+02 0.0037 19.3 6.4 42 97-141 28-69 (101)
285 2wzm_A Aldo-keto reductase; ox 29.4 1.6E+02 0.0056 22.0 6.7 17 124-140 180-196 (283)
286 2ywi_A Hypothetical conserved 29.4 1.2E+02 0.004 20.6 5.5 41 66-106 63-111 (196)
287 3nuq_A Protein SSM1, putative 29.3 1.4E+02 0.0047 21.5 6.1 45 68-112 144-194 (282)
288 3buv_A 3-OXO-5-beta-steroid 4- 29.2 1.5E+02 0.005 22.7 6.4 67 69-141 152-221 (326)
289 3lyu_A Putative hydrogenase; t 29.2 69 0.0023 21.4 4.1 41 95-140 98-138 (142)
290 3h7u_A Aldo-keto reductase; st 29.1 1E+02 0.0036 23.7 5.6 51 88-140 177-227 (335)
291 2qh8_A Uncharacterized protein 29.1 1.7E+02 0.0058 21.4 7.4 71 70-144 157-231 (302)
292 1xvw_A Hypothetical protein RV 29.0 38 0.0013 22.3 2.7 45 66-110 54-98 (160)
293 3ipz_A Monothiol glutaredoxin- 29.0 69 0.0024 20.2 3.9 51 93-146 36-86 (109)
294 3gbv_A Putative LACI-family tr 28.9 1.6E+02 0.0056 21.1 9.7 72 66-142 23-103 (304)
295 2hvw_A Deoxycytidylate deamina 28.9 1.5E+02 0.0053 21.0 6.0 54 81-140 122-175 (184)
296 3on1_A BH2414 protein; structu 28.8 1.1E+02 0.0038 19.2 5.9 41 98-141 28-68 (101)
297 3o94_A Nicotinamidase; hydrola 28.7 1.6E+02 0.0056 21.1 6.6 69 73-141 133-206 (211)
298 3p6l_A Sugar phosphate isomera 28.7 27 0.00092 25.5 2.0 46 94-140 66-111 (262)
299 3n28_A Phosphoserine phosphata 28.7 66 0.0023 24.4 4.3 27 81-107 69-95 (335)
300 1mzr_A 2,5-diketo-D-gluconate 28.6 1.7E+02 0.0057 22.2 6.6 47 92-140 162-208 (296)
301 3l4n_A Monothiol glutaredoxin- 28.6 63 0.0021 21.4 3.7 13 132-144 69-81 (127)
302 2l69_A Rossmann 2X3 fold prote 28.6 96 0.0033 20.0 4.3 58 80-140 48-108 (134)
303 3cs3_A Sugar-binding transcrip 28.6 95 0.0033 22.3 5.1 66 66-141 22-88 (277)
304 2jfn_A Glutamate racemase; cel 28.4 1.9E+02 0.0064 21.7 7.8 60 44-106 48-110 (285)
305 4f40_A Prostaglandin F2-alpha 28.4 1.7E+02 0.0058 21.9 6.6 18 123-140 185-202 (288)
306 2yxb_A Coenzyme B12-dependent 28.4 1.4E+02 0.0049 20.4 6.6 45 69-113 84-130 (161)
307 3n2t_A Putative oxidoreductase 28.3 1.3E+02 0.0046 23.2 6.1 46 93-140 180-225 (348)
308 1k77_A EC1530, hypothetical pr 28.3 1.6E+02 0.0055 20.9 9.3 68 71-138 42-142 (260)
309 3obe_A Sugar phosphate isomera 28.3 1.9E+02 0.0064 21.6 9.3 70 70-139 77-169 (305)
310 1gve_A Aflatoxin B1 aldehyde r 28.3 1E+02 0.0035 23.5 5.4 33 108-140 162-194 (327)
311 3u5r_E Uncharacterized protein 28.2 89 0.003 22.1 4.8 42 66-107 76-125 (218)
312 1gud_A ALBP, D-allose-binding 28.1 1.7E+02 0.0059 21.1 9.1 73 65-142 14-93 (288)
313 2w4l_A DCMP deaminse, deoxycyt 28.0 1.6E+02 0.0054 20.8 7.6 58 81-142 96-155 (178)
314 3hbm_A UDP-sugar hydrolase; PS 28.0 1.9E+02 0.0064 21.8 6.8 56 82-142 47-102 (282)
315 1ni5_A Putative cell cycle pro 27.9 2.3E+02 0.008 22.7 7.8 36 105-140 45-80 (433)
316 2qlt_A (DL)-glycerol-3-phospha 27.8 78 0.0027 23.0 4.5 44 70-113 118-165 (275)
317 4f2d_A L-arabinose isomerase; 27.7 2.2E+02 0.0077 23.5 7.6 56 69-124 433-490 (500)
318 3qy7_A Tyrosine-protein phosph 27.7 53 0.0018 24.7 3.5 78 64-141 52-138 (262)
319 1xpj_A Hypothetical protein; s 27.6 1.1E+02 0.0038 19.7 4.8 20 75-94 33-52 (126)
320 2fpr_A Histidine biosynthesis 27.5 1.5E+02 0.005 20.1 5.9 44 67-110 43-103 (176)
321 3ln3_A Dihydrodiol dehydrogena 27.5 1.5E+02 0.0051 22.5 6.2 69 69-140 147-218 (324)
322 3c3k_A Alanine racemase; struc 27.5 1.7E+02 0.0059 21.0 9.4 70 65-142 21-95 (285)
323 3h5t_A Transcriptional regulat 27.3 1.9E+02 0.0065 21.8 6.8 69 65-141 86-159 (366)
324 3tr6_A O-methyltransferase; ce 27.3 1.6E+02 0.0054 20.5 6.6 64 70-134 101-169 (225)
325 2vk2_A YTFQ, ABC transporter p 27.0 1.8E+02 0.0063 21.1 9.8 73 65-142 15-92 (306)
326 2oda_A Hypothetical protein ps 27.0 65 0.0022 22.6 3.8 46 68-114 38-83 (196)
327 3eyt_A Uncharacterized protein 27.0 95 0.0032 20.1 4.5 40 68-107 48-94 (158)
328 1r3s_A URO-D, uroporphyrinogen 26.4 1.3E+02 0.0046 23.4 5.8 66 44-113 212-285 (367)
329 2eja_A URO-D, UPD, uroporphyri 26.3 1.8E+02 0.0061 22.2 6.5 66 45-114 195-262 (338)
330 3no3_A Glycerophosphodiester p 26.2 1.8E+02 0.006 21.1 6.2 39 73-112 187-225 (238)
331 2bgs_A Aldose reductase; holoe 26.2 2E+02 0.0069 22.3 6.8 60 79-140 179-239 (344)
332 1w5q_A Delta-aminolevulinic ac 26.2 61 0.0021 25.7 3.6 69 22-92 13-89 (337)
333 3g40_A Na-K-CL cotransporter; 26.2 2.3E+02 0.0078 21.9 10.8 70 71-140 68-145 (294)
334 1vbj_A Prostaglandin F synthas 26.1 1.4E+02 0.0047 22.4 5.7 18 123-140 176-193 (281)
335 1we0_A Alkyl hydroperoxide red 26.0 1.3E+02 0.0045 20.3 5.2 37 67-103 50-86 (187)
336 1im5_A 180AA long hypothetical 26.0 1.6E+02 0.0056 20.2 6.5 64 73-138 110-179 (180)
337 4gxw_A Adenosine deaminase; am 25.9 1.9E+02 0.0065 23.0 6.7 62 77-143 205-269 (380)
338 3vdp_A Recombination protein R 25.9 2E+02 0.0068 21.2 6.4 45 95-139 140-184 (212)
339 3izc_H 60S ribosomal protein R 25.7 1.2E+02 0.004 23.1 5.1 54 84-141 129-182 (256)
340 1xzo_A BSSCO, hypothetical pro 25.7 1.5E+02 0.005 19.5 5.8 40 68-107 53-98 (174)
341 3r8s_O 50S ribosomal protein L 25.6 52 0.0018 21.8 2.8 38 98-136 79-116 (116)
342 3h7r_A Aldo-keto reductase; st 25.4 1.3E+02 0.0045 23.1 5.6 51 88-140 173-223 (331)
343 1w1z_A Delta-aminolevulinic ac 25.4 89 0.003 24.6 4.4 73 18-92 7-87 (328)
344 2gmw_A D,D-heptose 1,7-bisphos 25.3 1.2E+02 0.0042 21.1 5.1 43 68-110 52-111 (211)
345 1vp5_A 2,5-diketo-D-gluconic a 25.3 2.2E+02 0.0076 21.5 6.8 48 91-140 154-201 (298)
346 3iru_A Phoshonoacetaldehyde hy 25.2 86 0.0029 22.2 4.2 44 71-114 116-164 (277)
347 2ywb_A GMP synthase [glutamine 25.1 1.5E+02 0.0053 24.3 6.2 74 65-142 194-271 (503)
348 1ynp_A Oxidoreductase, AKR11C1 25.0 2.3E+02 0.0078 21.5 6.8 45 93-140 173-217 (317)
349 1z9b_A Translation initiation 25.0 1.6E+02 0.0056 19.9 6.8 65 69-140 52-122 (135)
350 3lmz_A Putative sugar isomeras 24.9 41 0.0014 24.5 2.4 69 70-139 31-108 (257)
351 2bp1_A Aflatoxin B1 aldehyde r 24.9 1.3E+02 0.0043 23.5 5.4 30 111-140 198-227 (360)
352 1h1j_S THO1 protein; SAP domai 24.8 83 0.0028 17.7 3.2 30 70-102 9-38 (51)
353 4exq_A UPD, URO-D, uroporphyri 24.8 1.1E+02 0.0039 24.0 5.2 66 45-114 213-283 (368)
354 1prx_A HORF6; peroxiredoxin, h 24.7 1.5E+02 0.0051 21.3 5.5 36 67-102 50-85 (224)
355 3kij_A Probable glutathione pe 24.7 1.3E+02 0.0045 20.2 5.0 43 66-108 55-106 (180)
356 3d02_A Putative LACI-type tran 24.7 2E+02 0.0068 20.7 10.4 73 65-142 17-95 (303)
357 3tfw_A Putative O-methyltransf 24.6 1.4E+02 0.0049 21.5 5.4 63 71-134 101-165 (248)
358 1o2d_A Alcohol dehydrogenase, 24.5 2.2E+02 0.0075 22.2 6.8 22 70-91 28-49 (371)
359 3ivs_A Homocitrate synthase, m 24.5 2.8E+02 0.0097 22.4 12.8 122 15-142 103-234 (423)
360 2gs3_A PHGPX, GPX-4, phospholi 24.4 1.5E+02 0.0052 20.0 5.3 44 67-110 67-118 (185)
361 1qwk_A Aldose reductase, aldo- 24.3 1.6E+02 0.0055 22.3 5.8 50 89-140 153-202 (317)
362 1n3y_A Integrin alpha-X; alpha 24.2 1.3E+02 0.0044 20.5 4.9 39 75-113 133-178 (198)
363 2ale_A SNU13, NHP2/L7AE family 24.2 87 0.003 21.1 3.8 9 97-105 68-76 (134)
364 4dgf_A Sulfate transporter sul 24.0 1E+02 0.0035 20.1 4.1 84 15-106 23-106 (135)
365 3e58_A Putative beta-phosphogl 24.0 1.6E+02 0.0055 19.5 8.6 46 69-114 92-141 (214)
366 2obi_A PHGPX, GPX-4, phospholi 24.0 1.6E+02 0.0053 19.9 5.3 44 67-110 65-116 (183)
367 1nfp_A LUXF gene product; flav 23.6 1.7E+02 0.006 20.7 5.7 38 88-125 170-211 (228)
368 1zgd_A Chalcone reductase; pol 23.5 1.7E+02 0.0059 22.1 5.8 52 88-141 165-216 (312)
369 2vo9_A EAD500, L-alanyl-D-glut 23.5 91 0.0031 22.1 3.9 35 67-101 37-72 (179)
370 3g85_A Transcriptional regulat 23.4 75 0.0026 23.0 3.7 71 66-142 26-100 (289)
371 2avd_A Catechol-O-methyltransf 23.3 1.9E+02 0.0065 20.1 7.0 62 72-134 108-174 (229)
372 2xhf_A Peroxiredoxin 5; oxidor 23.3 1.4E+02 0.0049 20.7 5.0 37 69-105 63-100 (171)
373 3qgm_A P-nitrophenyl phosphata 23.2 2.1E+02 0.007 20.4 6.2 31 76-106 34-67 (268)
374 3c0k_A UPF0064 protein YCCW; P 23.2 2.7E+02 0.0091 21.7 7.3 46 69-114 254-303 (396)
375 3a2k_A TRNA(Ile)-lysidine synt 23.2 1.7E+02 0.0059 23.7 6.1 37 104-140 48-85 (464)
376 3duw_A OMT, O-methyltransferas 23.2 1.9E+02 0.0065 20.0 8.0 62 71-133 96-161 (223)
377 1h4x_A SPOIIAA, anti-sigma F f 23.1 1.3E+02 0.0045 18.6 4.4 40 68-109 60-99 (117)
378 2zos_A MPGP, mannosyl-3-phosph 23.1 76 0.0026 22.9 3.6 30 77-106 28-57 (249)
379 3dv9_A Beta-phosphoglucomutase 23.1 71 0.0024 22.2 3.4 33 70-102 112-144 (247)
380 1i60_A IOLI protein; beta barr 23.0 2.1E+02 0.0071 20.4 8.5 43 69-111 46-104 (278)
381 3bfj_A 1,3-propanediol oxidore 23.0 2.7E+02 0.0093 21.7 7.3 17 73-89 23-40 (387)
382 3mfq_A TROA, high-affinity zin 23.0 1.7E+02 0.0059 22.0 5.7 43 95-140 203-245 (282)
383 2bmx_A Alkyl hydroperoxidase C 22.9 1.3E+02 0.0046 20.6 4.8 37 67-103 64-100 (195)
384 3ewb_X 2-isopropylmalate synth 22.9 2.5E+02 0.0086 21.3 10.1 102 40-142 93-208 (293)
385 1zrj_A E1B-55KDA-associated pr 22.8 99 0.0034 17.3 3.2 30 70-102 14-43 (50)
386 3qpm_A Peroxiredoxin; oxidored 22.8 1.4E+02 0.0048 21.7 5.1 38 66-103 95-132 (240)
387 3ctp_A Periplasmic binding pro 22.7 2.3E+02 0.008 20.9 8.3 67 65-142 73-144 (330)
388 3gx8_A Monothiol glutaredoxin- 22.7 1.3E+02 0.0045 19.4 4.4 50 92-144 33-85 (121)
389 1sbo_A Putative anti-sigma fac 22.7 95 0.0033 18.9 3.6 85 15-108 13-100 (110)
390 3cx3_A Lipoprotein; zinc-bindi 22.6 2.4E+02 0.0083 21.0 6.5 40 71-110 215-255 (284)
391 1lqa_A TAS protein; TIM barrel 22.6 38 0.0013 26.1 1.9 71 69-140 159-234 (346)
392 1uul_A Tryparedoxin peroxidase 22.5 1.3E+02 0.0045 20.7 4.7 37 67-103 55-91 (202)
393 2pn8_A Peroxiredoxin-4; thiore 22.4 1.1E+02 0.0038 21.6 4.3 38 66-103 66-103 (211)
394 4hyl_A Stage II sporulation pr 22.4 1E+02 0.0035 19.2 3.8 85 15-109 13-99 (117)
395 2o1e_A YCDH; alpha-beta protei 22.3 90 0.0031 24.0 4.0 43 69-111 226-269 (312)
396 2cw6_A Hydroxymethylglutaryl-C 22.2 2.5E+02 0.0087 21.1 10.1 111 32-143 85-212 (298)
397 1qyi_A ZR25, hypothetical prot 22.1 1.1E+02 0.0038 24.3 4.6 40 67-106 216-255 (384)
398 3gi1_A LBP, laminin-binding pr 22.1 2.5E+02 0.0087 21.0 7.8 43 69-111 215-258 (286)
399 2p31_A CL683, glutathione pero 22.1 1.7E+02 0.0058 19.7 5.1 41 67-107 67-116 (181)
400 3iz5_f 60S ribosomal protein L 22.0 1.7E+02 0.0058 19.0 5.8 48 87-139 27-74 (112)
401 2h3h_A Sugar ABC transporter, 22.0 2.3E+02 0.008 20.6 9.5 72 66-142 14-91 (313)
402 3kws_A Putative sugar isomeras 21.7 2.3E+02 0.008 20.5 7.4 55 62-116 139-201 (287)
403 3cyv_A URO-D, UPD, uroporphyri 21.7 1.1E+02 0.0038 23.6 4.5 65 45-113 203-272 (354)
404 4hde_A SCO1/SENC family lipopr 21.7 1.7E+02 0.0057 19.8 5.0 43 66-108 50-98 (170)
405 3nk6_A 23S rRNA methyltransfer 21.5 1.7E+02 0.0059 22.0 5.4 56 83-144 32-87 (277)
406 4ay7_A Methylcobalamin\: coenz 21.3 2.5E+02 0.0085 21.5 6.4 67 45-115 206-273 (348)
407 2fea_A 2-hydroxy-3-keto-5-meth 21.3 78 0.0027 22.4 3.3 44 70-113 81-125 (236)
408 1vq2_A DCMP deaminase, deoxycy 21.3 1.9E+02 0.0064 20.5 5.3 56 81-141 121-176 (193)
409 3v8e_A Nicotinamidase; hydrola 21.2 1.9E+02 0.0064 20.8 5.4 18 73-90 144-161 (216)
410 3lft_A Uncharacterized protein 21.2 2.4E+02 0.0083 20.4 7.3 71 70-144 150-224 (295)
411 3pdw_A Uncharacterized hydrola 21.2 2.3E+02 0.0078 20.1 7.7 36 71-106 27-65 (266)
412 3r3h_A O-methyltransferase, SA 21.1 2.3E+02 0.0079 20.3 6.0 56 78-134 105-165 (242)
413 2fn9_A Ribose ABC transporter, 21.1 2.3E+02 0.008 20.2 10.5 73 65-142 15-92 (290)
414 1rku_A Homoserine kinase; phos 21.1 1.4E+02 0.0049 20.1 4.6 39 70-109 73-111 (206)
415 3hh8_A Metal ABC transporter s 21.1 2.7E+02 0.0093 21.0 7.6 43 69-111 219-264 (294)
416 3p3b_A Mandelate racemase/muco 21.0 2E+02 0.0069 22.6 6.0 69 68-138 240-310 (392)
417 3l7y_A Putative uncharacterize 21.0 2.5E+02 0.0086 20.6 7.7 66 77-145 66-148 (304)
418 1l6s_A Porphobilinogen synthas 20.9 91 0.0031 24.5 3.6 70 21-92 4-81 (323)
419 2oq2_A Phosphoadenosine phosph 20.8 2.6E+02 0.0088 20.6 6.6 68 70-140 30-108 (261)
420 3hu5_A Isochorismatase family 20.8 2.3E+02 0.0077 20.0 5.8 67 72-139 115-186 (204)
421 1xbi_A 50S ribosomal protein L 20.8 1.8E+02 0.0062 18.9 5.3 40 99-140 40-79 (120)
422 2prs_A High-affinity zinc upta 20.8 2.7E+02 0.0091 20.8 6.5 41 70-110 211-252 (284)
423 3ndn_A O-succinylhomoserine su 20.8 1.6E+02 0.0055 23.2 5.3 66 76-142 139-205 (414)
424 3iz5_H 60S ribosomal protein L 20.8 2.2E+02 0.0076 21.6 5.7 54 84-141 125-178 (258)
425 3qxb_A Putative xylose isomera 20.8 2.6E+02 0.0089 20.7 7.1 48 92-139 36-89 (316)
426 3op6_A Uncharacterized protein 20.7 64 0.0022 21.8 2.6 36 70-105 3-38 (152)
427 2fhp_A Methylase, putative; al 20.7 1.7E+02 0.0058 19.4 4.9 46 70-115 79-127 (187)
428 3epr_A Hydrolase, haloacid deh 20.7 1.8E+02 0.006 20.9 5.2 30 77-106 32-64 (264)
429 2i33_A Acid phosphatase; HAD s 20.6 1.4E+02 0.0049 22.0 4.7 38 69-106 104-144 (258)
430 2do5_A Splicing factor 3B subu 20.6 21 0.00073 20.3 0.0 26 72-100 14-39 (58)
431 2lqo_A Putative glutaredoxin R 20.6 1.3E+02 0.0043 18.6 3.8 54 92-148 16-71 (92)
432 2v2g_A Peroxiredoxin 6; oxidor 20.5 1.4E+02 0.0049 21.7 4.7 35 67-101 48-82 (233)
433 3ox4_A Alcohol dehydrogenase 2 20.3 2.5E+02 0.0086 22.0 6.4 21 70-90 18-39 (383)
434 1zof_A Alkyl hydroperoxide-red 20.3 1.5E+02 0.005 20.3 4.5 35 68-102 53-87 (198)
435 1pyf_A IOLS protein; beta-alph 20.2 1.2E+02 0.0042 22.9 4.4 47 92-140 158-204 (312)
436 3hcz_A Possible thiol-disulfid 20.1 1.7E+02 0.0059 18.3 4.9 40 67-106 49-89 (148)
437 1jye_A Lactose operon represso 20.1 2.8E+02 0.0095 20.7 9.1 71 65-141 74-150 (349)
438 3o3r_A Aldo-keto reductase fam 20.0 2.6E+02 0.009 21.0 6.3 69 69-140 140-211 (316)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-37 Score=265.52 Aligned_cols=142 Identities=39% Similarity=0.728 Sum_probs=132.6
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCC---------CCCCcchHHHHHHHHHHHHHHHHhCCCe
Q psy6650 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS---------SNVGINKWRFLLQCLEDLDINLRKLNSR 84 (156)
Q Consensus 14 ~~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~---------~~~~~~r~~Fl~~sL~~L~~~L~~~g~~ 84 (156)
++++|||||+|||++||+||++|++.+.+|+||||+||.++.. ...|++|++||++||.+|+++|+++|++
T Consensus 4 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~ 83 (537)
T 3fy4_A 4 GSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSR 83 (537)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999998888999999999977642 2478999999999999999999999999
Q ss_pred EEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCC
Q psy6650 85 LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSR 155 (156)
Q Consensus 85 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~ 155 (156)
|+|+.|++.++|++|+++++|++||++.+|++++++||++|++.|++.||.++++++++|++|+++.+++|
T Consensus 84 L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~ 154 (537)
T 3fy4_A 84 LLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNG 154 (537)
T ss_dssp CEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTS
T ss_pred eEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999975443
No 2
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=2.1e-37 Score=263.94 Aligned_cols=141 Identities=42% Similarity=0.684 Sum_probs=134.5
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcCC---cceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhC---CCeEEEE
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGCT---TFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKL---NSRLFVI 88 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~---~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~---g~~L~v~ 88 (156)
+++|||||+|||++||+||.+|++.+. +|+||||+||.+++.+..|.+|++||++||.+|+++|+++ |++|+|+
T Consensus 4 ~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~ 83 (538)
T 3tvs_A 4 GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVF 83 (538)
T ss_dssp CEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEE
T ss_pred CcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 468999999999999999999998766 8999999999988877789999999999999999999999 9999999
Q ss_pred EcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCC
Q psy6650 89 RGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSR 155 (156)
Q Consensus 89 ~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~ 155 (156)
.|++.++|++|+++++|++||+|++|++++++||++|++.|++.||.++++++++|++|++|.+++|
T Consensus 84 ~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~ 150 (538)
T 3tvs_A 84 EGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNG 150 (538)
T ss_dssp ESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTT
T ss_pred eCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999977665
No 3
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=1.3e-34 Score=246.44 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=137.6
Q ss_pred CCCCCCCCCC--CCeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCC------CCCCcchHHHHHHHHHHHH
Q psy6650 4 LSTPTNPNST--EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS------SNVGINKWRFLLQCLEDLD 75 (156)
Q Consensus 4 ~~~~~~~~~~--~~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~------~~~~~~r~~Fl~~sL~~L~ 75 (156)
.|++++++++ ++++|||||+|||++||+||.+|++.+.+|+||||+||.++.. ...+.+|++||++||.+|+
T Consensus 27 ~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~ 106 (525)
T 2j4d_A 27 ALPSSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLR 106 (525)
T ss_dssp BCSCCTTCCCTTCCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCCCCeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHH
Confidence 3555554443 4678999999999999999999998778999999999977642 3578999999999999999
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCC--ceEEEecCCeeecCCCCCCC
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN--IEVIARVSHTLYDLDQLKPD 153 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~--i~~~~~~~~~L~~~~~l~~~ 153 (156)
++|+++|++|+++.|++.++|++|+++++|++|+++.+|+++++++|++|++.|++.| |+++.+++++|++|+++.+.
T Consensus 107 ~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~ 186 (525)
T 2j4d_A 107 KNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFD 186 (525)
T ss_dssp HHHHHTTCCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSC
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999889 89999999999999999886
Q ss_pred CC
Q psy6650 154 SR 155 (156)
Q Consensus 154 ~~ 155 (156)
.|
T Consensus 187 ~g 188 (525)
T 2j4d_A 187 VF 188 (525)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 4
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=2.2e-34 Score=242.90 Aligned_cols=142 Identities=24% Similarity=0.488 Sum_probs=133.9
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD 94 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~ 94 (156)
..+|||||+|||++||+||.+|++.+.+|+||||+||.+++....|.+|++|+++||.+|+++|+++|++|+++.|++.+
T Consensus 3 ~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~g~~~~ 82 (484)
T 1owl_A 3 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQH 82 (484)
T ss_dssp CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEESCHHH
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 35799999999999999999999745589999999998876667899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCCC
Q psy6650 95 ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156 (156)
Q Consensus 95 ~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~~ 156 (156)
+|++|+++++|+.|+++.+|++++++||++|++.|++.||+++.+++++|++|+++.+++|+
T Consensus 83 ~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~ 144 (484)
T 1owl_A 83 LIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGN 144 (484)
T ss_dssp HHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSC
T ss_pred HHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCC
Confidence 99999999999999999999999999999999999989999999999999999999987763
No 5
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=3.3e-34 Score=242.01 Aligned_cols=141 Identities=23% Similarity=0.396 Sum_probs=132.8
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcC-----CCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAG-----SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIR 89 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~-----~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~ 89 (156)
+++|||||+|||++||+||.+|++.+.+++||||+||.++. ....+++|++|+++||.+|+++|+++|++|+++.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 85 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTT 85 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 46899999999999999999999888899999999998765 2457899999999999999999999999999999
Q ss_pred cChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCC
Q psy6650 90 GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSR 155 (156)
Q Consensus 90 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~ 155 (156)
|++.++|++|+++++|++|+++.+|++++++||++|++.|++.||.++.+++++|++|+++.+.+|
T Consensus 86 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g 151 (489)
T 1np7_A 86 GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQ 151 (489)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGG
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCC
Confidence 999999999999999999999999999999999999999988899999999999999999988654
No 6
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=2.4e-34 Score=243.57 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=128.1
Q ss_pred CCCeEEEEecCCCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy6650 13 TEKHMVHWFRKGLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVI 88 (156)
Q Consensus 13 ~~~~~l~Wfr~DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~ 88 (156)
.+.++|||||+|||++||+||.+|++ .+.+|+||||+||.++. ...|.+|++||++||.+|+++|+++|++|+|+
T Consensus 36 ~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~-~~~~~~r~~FL~~sL~dL~~~L~~lG~~L~v~ 114 (506)
T 3umv_A 36 PGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFL-LSARRRQLGFLLRGLRRLAADAAARHLPFFLF 114 (506)
T ss_dssp TTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhc-cCCCHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 34678999999999999999999996 35689999999998542 35789999999999999999999999999999
Q ss_pred EcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHH--hCCceEEEecCCeeecCCCCCCCCC
Q psy6650 89 RGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR--ELNIEVIARVSHTLYDLDQLKPDSR 155 (156)
Q Consensus 89 ~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~--~~~i~~~~~~~~~L~~~~~l~~~~~ 155 (156)
.|++.++ ++|+++++|+.||++.++...+++||++|++.|+ +.||.++++++++|++|+++.+++|
T Consensus 115 ~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~~v~~~~~ 182 (506)
T 3umv_A 115 TGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKME 182 (506)
T ss_dssp SSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHHHHCSSCC
T ss_pred ecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcccccCCCC
Confidence 9999999 9999999999999988877777799999999997 6799999999999999999988765
No 7
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.4e-34 Score=238.57 Aligned_cols=132 Identities=31% Similarity=0.444 Sum_probs=126.3
Q ss_pred EEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCC-CCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHH
Q psy6650 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-VGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADI 95 (156)
Q Consensus 17 ~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~-~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~ 95 (156)
+|||||+|||++||+||.+|++.+.+|+||||+||.+++... .|.+|++|+++||.+|+++|+++|++|+++.|++.++
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~~~~~ 82 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFFGEAEKV 82 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESCHHHH
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEECCHHHH
Confidence 799999999999999999999877899999999998876655 8999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCC
Q psy6650 96 LPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150 (156)
Q Consensus 96 l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l 150 (156)
|++|++ +|+.|+++.+|++++++||++|++.|++.||+++.+++++|++|+++
T Consensus 83 l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~ 135 (440)
T 2e0i_A 83 VSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF 135 (440)
T ss_dssp HHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC
T ss_pred HHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc
Confidence 999999 99999999999999999999999999988999999999999999876
No 8
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=1.7e-33 Score=238.70 Aligned_cols=142 Identities=23% Similarity=0.340 Sum_probs=129.0
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEE-cCh
Q psy6650 14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIR-GQP 92 (156)
Q Consensus 14 ~~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~-g~~ 92 (156)
++++|||||+|||++||+||.+|++.+ +++||||+||.++.....+..+..|+++||.+|+++|+++|++|+++. |++
T Consensus 11 ~~~~l~WfrrDLRl~DN~aL~~A~~~~-~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~ 89 (509)
T 1u3d_A 11 GGCSIVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDS 89 (509)
T ss_dssp --CEEEEESSCCCSTTCHHHHHHHHHS-CEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCH
T ss_pred CCcEEEEECCCCccchhHHHHHHHhCC-CEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 466899999999999999999999874 899999999987654344666667999999999999999999999998 699
Q ss_pred HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCCC
Q psy6650 93 ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~~ 156 (156)
.++|++|+++++|++|++|.+|+|++.+||++|++.|++.||+++.+++++|++|+++.+++|+
T Consensus 90 ~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~ 153 (509)
T 1u3d_A 90 VASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGR 153 (509)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSC
T ss_pred HHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCC
Confidence 9999999999999999999999999999999999999988999999999999999999888763
No 9
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=3.5e-34 Score=240.95 Aligned_cols=139 Identities=18% Similarity=0.242 Sum_probs=129.8
Q ss_pred eEEEEecCCCCccccHHHHHHHhc-CCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEE----Ec
Q psy6650 16 HMVHWFRKGLRMHDNPSLREGLKG-CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVI----RG 90 (156)
Q Consensus 16 ~~l~Wfr~DLRl~DN~aL~~A~~~-~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~----~g 90 (156)
.+|||||+|||++||+||.+|++. ..+|+||||+||.+++.+..|.+|++|+++||.+|+++|+++|++|+++ .|
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~g 81 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 81 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSHH
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCCC
Confidence 479999999999999999999973 3499999999998776567899999999999999999999999999999 99
Q ss_pred ChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCCC
Q psy6650 91 QPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156 (156)
Q Consensus 91 ~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~~ 156 (156)
++.++|++|+++++|+.|+++.+|++++++||++|++.|++ |.++.+++++|++|+++.+++|+
T Consensus 82 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g~ 145 (471)
T 1dnp_A 82 ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--VVCEGFDDSVILPPGAVMTGNHE 145 (471)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTSSCCTTSC
T ss_pred CHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--cEEEEecCCEEEchhhcccCCCC
Confidence 99999999999999999999999999999999999999965 99999999999999999988763
No 10
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=2.4e-33 Score=239.42 Aligned_cols=137 Identities=48% Similarity=0.892 Sum_probs=128.4
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcCCc------ceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEE
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGCTT------FRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVI 88 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~------vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~ 88 (156)
+.+|||||+|||++||+||.+|++.+.+ |+||||+||.++.....+.+|++|+++||.+|+++|+++|++|+++
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~ 108 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVV 108 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3459999999999999999999876555 9999999998886666899999999999999999999999999999
Q ss_pred EcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCC
Q psy6650 89 RGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLK 151 (156)
Q Consensus 89 ~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~ 151 (156)
.|++.++|++|+++++|++|+++.+|+|++++||+.|++.|++.||.++.+++++|++|+++.
T Consensus 109 ~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~ 171 (543)
T 2wq7_A 109 RGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVI 171 (543)
T ss_dssp ESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccc
Confidence 999999999999999999999999999999999999999999889999999999999999843
No 11
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=99.97 E-value=2.4e-31 Score=220.95 Aligned_cols=127 Identities=22% Similarity=0.364 Sum_probs=121.4
Q ss_pred eEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHH
Q psy6650 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADI 95 (156)
Q Consensus 16 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~ 95 (156)
.+|||||+|||++||+||.+|++.+ +|+||||+||.++. . +.+|++|+++||.+|+++|+++|++|+++.|++.++
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~~~-~v~~vfi~d~~~~~--~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g~~~~~ 78 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNLK--T-TPRRRAWFLENVRALREAYRARGGALWVLEGLPWEK 78 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTS-CEEEEEEECHHHHS--S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred eEEEEeCCCCCccccHHHHHHHhCC-CEEEEEEECCcccc--C-CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 4799999999999999999999766 89999999998775 4 899999999999999999999999999999999999
Q ss_pred HHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCC
Q psy6650 96 LPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQ 149 (156)
Q Consensus 96 l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~ 149 (156)
|++|+++++|+.|+++.+|++++++||++|++.| ||+++.+++++|++|++
T Consensus 79 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~ 129 (420)
T 2j07_A 79 VPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLLPAPHLLPPDL 129 (420)
T ss_dssp HHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEECCCCSSCTTC
T ss_pred HHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CCeEEEeCCCEEEccCC
Confidence 9999999999999999999999999999999988 99999999999999987
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=99.97 E-value=6.8e-31 Score=221.37 Aligned_cols=134 Identities=19% Similarity=0.343 Sum_probs=124.5
Q ss_pred eEEEEecCCCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcC
Q psy6650 16 HMVHWFRKGLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQ 91 (156)
Q Consensus 16 ~~l~Wfr~DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~ 91 (156)
++|||||+|||++||+||.+|++ .+.+|+||||+||.++. .+.+|++|+++||.+|+++|+++|++|+++.|+
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~ 114 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE---AGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGD 114 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG---SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc---cCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 68999999999999999999985 35689999999998763 688999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCC
Q psy6650 92 PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSR 155 (156)
Q Consensus 92 ~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~ 155 (156)
+.++|++|+++++|+.|+++.+|+++++++++++++.+ ||+++.+++++|++|+++.+++|
T Consensus 115 ~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~~~~~~~~l~~~~~~~~~~~ 175 (482)
T 2xry_A 115 PGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPFFEVDAHNVVPCWEASQKHE 175 (482)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCEEEECCSSSSCHHHHCSSCC
T ss_pred HHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEEEEEeCCEEccccccccCCC
Confidence 99999999999999999999999999999999888765 99999999999999998887654
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=98.97 E-value=9.4e-10 Score=93.08 Aligned_cols=126 Identities=13% Similarity=-0.002 Sum_probs=100.5
Q ss_pred EEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCC-CcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEE------
Q psy6650 17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPW-FAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIR------ 89 (156)
Q Consensus 17 ~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~-~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~------ 89 (156)
.+.|.=-|-=..++++|..+- .+ ..+|+..+.. ........++|..|++.||++++++|+++|.+++++.
T Consensus 17 ~~~~ilgdQL~~~~~~~~~~~-~~--~~~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~ 93 (522)
T 3zxs_A 17 RLILVLGDQLSDDLPALRAAD-PA--ADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDT 93 (522)
T ss_dssp CEEECCTTCCCTTCHHHHTCC-TT--TCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTC
T ss_pred eeEEeecccCCCccchhhhcC-CC--CCEEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 478888888888889886432 11 2134344332 2222355779999999999999999999999999998
Q ss_pred -cChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCC-eeecCCCCCC
Q psy6650 90 -GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH-TLYDLDQLKP 152 (156)
Q Consensus 90 -g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~-~L~~~~~l~~ 152 (156)
|++.+.|++++++.+++.|+++ +|.+.+++++|++. ||+++.+++. .|++|+++.+
T Consensus 94 ~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi~v~~~~~~~fL~~~~e~~~ 151 (522)
T 3zxs_A 94 GPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PLPVRFLPDDRFLCPADEFAR 151 (522)
T ss_dssp CSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SSCEEEECCCCSSSCHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CCcEEEeCCCCcccCHHHHHH
Confidence 8999999999999999999999 68888888888744 9999999986 7999998865
No 14
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=95.80 E-value=0.096 Score=35.37 Aligned_cols=90 Identities=4% Similarity=0.046 Sum_probs=60.7
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCC-------cchHHHHHHHHHHHHHHHHhCCC---eEEEEE
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVG-------INKWRFLLQCLEDLDINLRKLNS---RLFVIR 89 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~-------~~r~~Fl~~sL~~L~~~L~~~g~---~L~v~~ 89 (156)
|.--....+|..|+. .+.++..+++.++........+ .....-..+.|..+.+.+.+.|+ ...+..
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 92 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEISY 92 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEec
Confidence 444444566766664 3568999999987533211110 11123345567777778888777 567889
Q ss_pred cChHHHHHH-HHHHcCcCeEEEccc
Q psy6650 90 GQPADILPK-LFKEWKTTCLTFEED 113 (156)
Q Consensus 90 g~~~~~l~~-l~~~~~~~~V~~~~~ 113 (156)
|++.+.|.+ .+++.+++-|++...
T Consensus 93 g~~~~~I~~~~a~~~~~dliV~G~~ 117 (146)
T 3s3t_A 93 GIPKHTIEDYAKQHPEIDLIVLGAT 117 (146)
T ss_dssp ECHHHHHHHHHHHSTTCCEEEEESC
T ss_pred CChHHHHHHHHHhhcCCCEEEECCC
Confidence 999999999 999999999988754
No 15
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=95.10 E-value=0.4 Score=32.02 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=56.8
Q ss_pred ccHHHHHHHh----cCCcceEEEEeCCCCcC-CC--CC---CcchHHHHHHHHHHHHHHHHhCCC-----eEEEEEcChH
Q psy6650 29 DNPSLREGLK----GCTTFRCVFILDPWFAG-SS--NV---GINKWRFLLQCLEDLDINLRKLNS-----RLFVIRGQPA 93 (156)
Q Consensus 29 DN~aL~~A~~----~~~~vi~vfi~d~~~~~-~~--~~---~~~r~~Fl~~sL~~L~~~L~~~g~-----~L~v~~g~~~ 93 (156)
...+|..|+. .+.++..+++.++.... .. .. .........+.+..+++-+++.|. ...+..|++.
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~ 95 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPK 95 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecChH
Confidence 3456666653 35689999999873211 00 00 011233455677778877888875 4668899999
Q ss_pred HHHHHHHHHcCcCeEEEccc
Q psy6650 94 DILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 94 ~~l~~l~~~~~~~~V~~~~~ 113 (156)
+.|.+.+++.+++-|++...
T Consensus 96 ~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 96 DKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999998766
No 16
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=94.99 E-value=0.51 Score=32.55 Aligned_cols=86 Identities=12% Similarity=-0.097 Sum_probs=60.1
Q ss_pred CC-CccccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEE----EEcChHH
Q psy6650 24 GL-RMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFV----IRGQPAD 94 (156)
Q Consensus 24 DL-Rl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v----~~g~~~~ 94 (156)
|. --....+|..|+. .+.++..+++.++... .......-..+.|.++.+.+++.|++..+ ..|++.+
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~ 107 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR----TKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPD 107 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT----SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc----ccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHH
Confidence 44 4444566666654 3568999999986421 11222334566778888888888987653 2499999
Q ss_pred HHHHHHHHcCcCeEEEccc
Q psy6650 95 ILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 95 ~l~~l~~~~~~~~V~~~~~ 113 (156)
.|.+.+++.+++-|++...
T Consensus 108 ~I~~~a~~~~~DLIV~G~~ 126 (155)
T 3dlo_A 108 DIVDFADEVDAIAIVIGIR 126 (155)
T ss_dssp HHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECCC
Confidence 9999999999999988644
No 17
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=94.93 E-value=0.31 Score=32.71 Aligned_cols=85 Identities=11% Similarity=0.137 Sum_probs=57.8
Q ss_pred ccHHHHHHHh----cCCcceEEEEeCCCC-c-CC---------CCCCcchHHHHHHHHHHHHHHHHhCCC-----eEEEE
Q psy6650 29 DNPSLREGLK----GCTTFRCVFILDPWF-A-GS---------SNVGINKWRFLLQCLEDLDINLRKLNS-----RLFVI 88 (156)
Q Consensus 29 DN~aL~~A~~----~~~~vi~vfi~d~~~-~-~~---------~~~~~~r~~Fl~~sL~~L~~~L~~~g~-----~L~v~ 88 (156)
...+|..|++ .+.++..+++.++.. + .. .........-..+.|..+.+.+++.|+ ...+.
T Consensus 15 s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~ 94 (147)
T 3hgm_A 15 AVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKVRAFVK 94 (147)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEEe
Confidence 3455666553 357899999998632 1 00 001111223455677788888888885 45678
Q ss_pred EcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 89 RGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 89 ~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
.|++.+.|.+.+++.+++-|++...
T Consensus 95 ~g~~~~~I~~~a~~~~~dliV~G~~ 119 (147)
T 3hgm_A 95 GGRPSRTIVRFARKRECDLVVIGAQ 119 (147)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEECSS
T ss_pred cCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 8999999999999999999998754
No 18
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=94.80 E-value=0.56 Score=31.61 Aligned_cols=90 Identities=10% Similarity=0.112 Sum_probs=54.1
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEeCCCCc-----CCC---CCCcchHHHHHHHHHHHHHHHHhCCC---eEEEE
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFILDPWFA-----GSS---NVGINKWRFLLQCLEDLDINLRKLNS---RLFVI 88 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~-----~~~---~~~~~r~~Fl~~sL~~L~~~L~~~g~---~L~v~ 88 (156)
|.--....+|..|+. .+.++..+++.++... ... ...........+.-..|++-.++.|+ ...+.
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLV 93 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEe
Confidence 333344567766664 3578999999987322 100 00112223333444444444444454 47888
Q ss_pred EcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 89 RGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 89 ~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
.|++.+.|.+.+++.+++-|++...
T Consensus 94 ~g~~~~~I~~~a~~~~~dliV~G~~ 118 (150)
T 3tnj_A 94 WGEPREEIIRIAEQENVDLIVVGSH 118 (150)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEEEC
T ss_pred cCCHHHHHHHHHHHcCCCEEEEecC
Confidence 9999999999999999999988754
No 19
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=94.22 E-value=0.8 Score=31.13 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=57.1
Q ss_pred cccHHHHHHHh----cCCcceEEEEeCCCCcCCCC-CCc----chHHHHHHHHHHHHHHHHhCCC---eEEEEE-cChHH
Q psy6650 28 HDNPSLREGLK----GCTTFRCVFILDPWFAGSSN-VGI----NKWRFLLQCLEDLDINLRKLNS---RLFVIR-GQPAD 94 (156)
Q Consensus 28 ~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~-~~~----~r~~Fl~~sL~~L~~~L~~~g~---~L~v~~-g~~~~ 94 (156)
....+|..|++ .+.++..++++++....... ..+ ....-..+.|..+.+.+++.|+ ...+.. |++.+
T Consensus 29 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~ 108 (156)
T 3fg9_A 29 SSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDD 108 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHH
Confidence 33456666653 35689999999875321110 111 1123345566777777777787 356778 99999
Q ss_pred HHHHH-HHHcCcCeEEEccc
Q psy6650 95 ILPKL-FKEWKTTCLTFEED 113 (156)
Q Consensus 95 ~l~~l-~~~~~~~~V~~~~~ 113 (156)
.|.+. +++.+++-|++...
T Consensus 109 ~I~~~~a~~~~~DlIV~G~~ 128 (156)
T 3fg9_A 109 VILEQVIPEFKPDLLVTGAD 128 (156)
T ss_dssp HHHHTHHHHHCCSEEEEETT
T ss_pred HHHHHHHHhcCCCEEEECCC
Confidence 99998 99999999988755
No 20
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=93.60 E-value=0.43 Score=33.06 Aligned_cols=117 Identities=9% Similarity=-0.002 Sum_probs=66.9
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCC--CC-----------Ccc---hHHHHHHHHHHHHHHHHhCCC
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSS--NV-----------GIN---KWRFLLQCLEDLDINLRKLNS 83 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~--~~-----------~~~---r~~Fl~~sL~~L~~~L~~~g~ 83 (156)
|.--....+|..|++ .+.++..++++++...... .. ... ...-..+.|.++.+.++..|+
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 92 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFR 92 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 443344567777765 2467889999876421100 00 011 112233456666666666675
Q ss_pred e--E--EEEEcChHHHHHHHHHHcCcCeEEEcccCC-chhHHHH-HHHHHHHHhCCceEEEec
Q psy6650 84 R--L--FVIRGQPADILPKLFKEWKTTCLTFEEDPE-PFGKVRD-QNIMTLCRELNIEVIARV 140 (156)
Q Consensus 84 ~--L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~~d-~~v~~~l~~~~i~~~~~~ 140 (156)
+ . .+..|++.+.|.+.+++.+++-|++...-. ....... .-..+.+...++++..+.
T Consensus 93 ~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 93 AKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp CSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred ceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 4 4 677899999999999999999998876532 2111101 112233444567777664
No 21
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=93.58 E-value=0.24 Score=37.67 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEE--cC---hHHHHHHHHHHcCc
Q psy6650 31 PSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIR--GQ---PADILPKLFKEWKT 105 (156)
Q Consensus 31 ~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~--g~---~~~~l~~l~~~~~~ 105 (156)
.+++.|.+++..|++++..-+.... +..|-...+...+...+.+|++++++. |+ -.+.+.++.++.++
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~-------s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i 91 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEE-------SYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKI 91 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC---------------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCC-------ccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCC
Confidence 4566677777788888654332110 111111223445556677899999875 32 24566677777899
Q ss_pred CeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 106 TCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 106 ~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
+.|++-.-...+.+.|.+ +.|.+.|++...
T Consensus 92 ~~vv~Gdi~s~yqr~r~e---~vc~~~gl~~~~ 121 (237)
T 3rjz_A 92 QGIVAGALASKYQRKRIE---KVAKELGLEVYT 121 (237)
T ss_dssp SEEECC---CCSHHHHHH---HHHHHTTCEEEC
T ss_pred cEEEECCcchHHHHHHHH---HHHHHcCCEEEc
Confidence 999999888888777666 445556776543
No 22
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=92.24 E-value=0.38 Score=33.51 Aligned_cols=117 Identities=12% Similarity=0.071 Sum_probs=63.9
Q ss_pred CCCccccHHHHHHHh---cCCcceEE--EEeCCCCc-CCCCCC-----cchHHHHHHHHHHHHHHHHhCCCe---EEEEE
Q psy6650 24 GLRMHDNPSLREGLK---GCTTFRCV--FILDPWFA-GSSNVG-----INKWRFLLQCLEDLDINLRKLNSR---LFVIR 89 (156)
Q Consensus 24 DLRl~DN~aL~~A~~---~~~~vi~v--fi~d~~~~-~~~~~~-----~~r~~Fl~~sL~~L~~~L~~~g~~---L~v~~ 89 (156)
|.--....+|..|++ .+.++..+ |+.++... .....+ .....-..+.|.++.+.+.+.|++ ..+..
T Consensus 25 D~s~~s~~al~~A~~lA~~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~ 104 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIV 104 (163)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 443334456666654 34578888 88765322 100000 000011234566777777777876 55678
Q ss_pred cChHHHHHHHHHHcCcCeEEEcccC-CchhHHHHHHH-HHHHHhCCceEEEec
Q psy6650 90 GQPADILPKLFKEWKTTCLTFEEDP-EPFGKVRDQNI-MTLCRELNIEVIARV 140 (156)
Q Consensus 90 g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~~~d~~v-~~~l~~~~i~~~~~~ 140 (156)
|++.+.|.+.+++.+++-|++...- +.......-.+ .+.+....+++..+.
T Consensus 105 G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~ 157 (163)
T 1tq8_A 105 GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVH 157 (163)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEEC
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEe
Confidence 9999999999999999999887653 22222111112 233444467776553
No 23
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=91.78 E-value=1.9 Score=28.50 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=47.4
Q ss_pred ccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCCcc-----hHHHHHHHHHHHHHHHHhCCC---eEEEEEcChHHHH
Q psy6650 29 DNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGIN-----KWRFLLQCLEDLDINLRKLNS---RLFVIRGQPADIL 96 (156)
Q Consensus 29 DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~~~-----r~~Fl~~sL~~L~~~L~~~g~---~L~v~~g~~~~~l 96 (156)
...+|..|+. .+.++..+++.++.........+. ...-..+.|..+.+. .|+ ...+..|++.+.|
T Consensus 15 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~g~~~~~I 91 (137)
T 2z08_A 15 ARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL---TGVPKEDALLLEGVPAEAI 91 (137)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH---HCCCGGGEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH---cCCCccEEEEEecCHHHHH
Confidence 3456666553 356899999988632110000010 011122223333222 455 5778899999999
Q ss_pred HHHHHHcCcCeEEEccc
Q psy6650 97 PKLFKEWKTTCLTFEED 113 (156)
Q Consensus 97 ~~l~~~~~~~~V~~~~~ 113 (156)
.+.+++.+++-|++...
T Consensus 92 ~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 92 LQAARAEKADLIVMGTR 108 (137)
T ss_dssp HHHHHHTTCSEEEEESS
T ss_pred HHHHHHcCCCEEEECCC
Confidence 99999999999988755
No 24
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=90.70 E-value=2.1 Score=30.58 Aligned_cols=66 Identities=5% Similarity=-0.021 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEccc-------------CCchhHHHHHHHHHHHHhCC
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED-------------PEPFGKVRDQNIMTLCRELN 133 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~-------------~~~~~~~~d~~v~~~l~~~~ 133 (156)
..++.++-+.|++.|+++.|+.+.+...+..+++..+++.++.+.- ...........+...+++.|
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~~~ 172 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMG 172 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHHcC
Confidence 4567778888899999999999999999999999999987665421 11222333455666666666
No 25
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=89.72 E-value=2.9 Score=31.47 Aligned_cols=111 Identities=8% Similarity=0.013 Sum_probs=59.2
Q ss_pred cHHHHHHHh----cCCcceEEEEeCCCCcCCCCCC-cchHHHHHHHHHHHHHHHHhCCC---eEEEEEcChHHHHHHHHH
Q psy6650 30 NPSLREGLK----GCTTFRCVFILDPWFAGSSNVG-INKWRFLLQCLEDLDINLRKLNS---RLFVIRGQPADILPKLFK 101 (156)
Q Consensus 30 N~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~-~~r~~Fl~~sL~~L~~~L~~~g~---~L~v~~g~~~~~l~~l~~ 101 (156)
..+|..|.. .+.++..++++++......... ........+....|++-+++.|+ ...+..|++.+.|.++++
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~ 234 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQ 234 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHH
Confidence 456666653 3568999999987432110000 01111222233344444444465 478889999999999999
Q ss_pred HcCcCeEEEcccC-CchhHHHHHHH-HHHHHhCCceEEEec
Q psy6650 102 EWKTTCLTFEEDP-EPFGKVRDQNI-MTLCRELNIEVIARV 140 (156)
Q Consensus 102 ~~~~~~V~~~~~~-~~~~~~~d~~v-~~~l~~~~i~~~~~~ 140 (156)
+.+++-|++...- +....-..-.+ .+.+....+++-.+.
T Consensus 235 ~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~ 275 (290)
T 3mt0_A 235 KLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLK 275 (290)
T ss_dssp HHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEEC
T ss_pred hcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEEC
Confidence 9999999886542 22221111122 233444467766554
No 26
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=89.68 E-value=5.2 Score=30.04 Aligned_cols=104 Identities=8% Similarity=-0.003 Sum_probs=67.0
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCe--EEEEEcChHHHHH
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSR--LFVIRGQPADILP 97 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~ 97 (156)
|..-....+|..|.. .+.++..+++.++.. -.+.+.++.+.|++.|++ ..+..|++.+.|.
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------------~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~ 244 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------------KTADLRVMEEVIGAEGIEVHVHIESGTPHKAIL 244 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------------CHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------------HHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHH
Confidence 444455566766653 346788889987632 124567777788888876 4566799999999
Q ss_pred HHHHHcCcCeEEEcccC-CchhHHHHHHH-HHHHHhCCceEEEec
Q psy6650 98 KLFKEWKTTCLTFEEDP-EPFGKVRDQNI-MTLCRELNIEVIARV 140 (156)
Q Consensus 98 ~l~~~~~~~~V~~~~~~-~~~~~~~d~~v-~~~l~~~~i~~~~~~ 140 (156)
+.+++.+++-|++...- +....-.--.+ .+.+....+++-.+.
T Consensus 245 ~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 245 AKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred HHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 99999999999876543 22222222222 334444567766553
No 27
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=89.08 E-value=3.4 Score=27.10 Aligned_cols=82 Identities=9% Similarity=0.063 Sum_probs=52.4
Q ss_pred cHHHHHHHh-----cCCcceEEEEeCCCCcCCCC-CCc-----chH-HHHHHHHHHHHHHHHhCCCe--EEEEEcChHHH
Q psy6650 30 NPSLREGLK-----GCTTFRCVFILDPWFAGSSN-VGI-----NKW-RFLLQCLEDLDINLRKLNSR--LFVIRGQPADI 95 (156)
Q Consensus 30 N~aL~~A~~-----~~~~vi~vfi~d~~~~~~~~-~~~-----~r~-~Fl~~sL~~L~~~L~~~g~~--L~v~~g~~~~~ 95 (156)
..+|..|+. .+.++..+++.++....... ..+ ... .-..+.|..+.+.+.+.|++ ..+..|++.+.
T Consensus 15 ~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~ 94 (138)
T 3idf_A 15 ERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGEPVEM 94 (138)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEESCHHHH
T ss_pred HHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCChHHH
Confidence 345555543 34578889999874321000 000 001 23345667777778777766 66788999999
Q ss_pred HHHHHHHcCcCeEEEccc
Q psy6650 96 LPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 96 l~~l~~~~~~~~V~~~~~ 113 (156)
|.+.++ +++-|++...
T Consensus 95 I~~~a~--~~dliV~G~~ 110 (138)
T 3idf_A 95 VLEEAK--DYNLLIIGSS 110 (138)
T ss_dssp HHHHHT--TCSEEEEECC
T ss_pred HHHHHh--cCCEEEEeCC
Confidence 999998 8999988654
No 28
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=88.24 E-value=1.7 Score=29.54 Aligned_cols=90 Identities=8% Similarity=0.050 Sum_probs=57.3
Q ss_pred CCCccccHHHHHHHhc----CCcceEEEEeCCC-----Cc-CCC--C--CCcc-----------hHHHHHHHHHHHHHHH
Q psy6650 24 GLRMHDNPSLREGLKG----CTTFRCVFILDPW-----FA-GSS--N--VGIN-----------KWRFLLQCLEDLDINL 78 (156)
Q Consensus 24 DLRl~DN~aL~~A~~~----~~~vi~vfi~d~~-----~~-~~~--~--~~~~-----------r~~Fl~~sL~~L~~~L 78 (156)
|.--....+|..|++. +.++..++++++. .. ... . ..+. ...-..+.|.++.+.+
T Consensus 13 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (162)
T 1mjh_A 13 DFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92 (162)
T ss_dssp CSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445678777752 4678899998763 11 100 0 0011 0112334566677777
Q ss_pred HhCCCe--EEEEEcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 79 RKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 79 ~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
...|++ ..+..|++.+.|.+.+++.+++-|++...
T Consensus 93 ~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~ 129 (162)
T 1mjh_A 93 EDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSH 129 (162)
T ss_dssp HHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCC
Confidence 778876 45678999999999999999999988755
No 29
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=87.87 E-value=4.5 Score=28.52 Aligned_cols=84 Identities=10% Similarity=0.041 Sum_probs=50.0
Q ss_pred HHHHHHHHHHH----hCCCeEEEEEcChHHHHHHHHHHc--CcCeEEEcc-cCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 69 QCLEDLDINLR----KLNSRLFVIRGQPADILPKLFKEW--KTTCLTFEE-DPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 69 ~sL~~L~~~L~----~~g~~L~v~~g~~~~~l~~l~~~~--~~~~V~~~~-~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
++|.++.+.|+ ++|..+.+++.+.+..|.+.+.+. +++.|+.|. .|+......-+.++. +...+++++.++-
T Consensus 29 ~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~-l~~~~~P~VEVHi 107 (151)
T 3u80_A 29 QDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHM-VIDENLPLMEVHI 107 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHH-HHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHH-HhhcCCCEEEEEc
Confidence 34555555544 579999999988776666655542 467788774 455565544444322 3445899999999
Q ss_pred CeeecCCCCCCC
Q psy6650 142 HTLYDLDQLKPD 153 (156)
Q Consensus 142 ~~L~~~~~l~~~ 153 (156)
..++..+.++..
T Consensus 108 SNi~aRE~FRh~ 119 (151)
T 3u80_A 108 SNPSARDEFRKR 119 (151)
T ss_dssp SCCC--------
T ss_pred CCcccccchhhc
Confidence 999888877654
No 30
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=87.68 E-value=7.2 Score=29.21 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=67.2
Q ss_pred ccHHHHHHH----hcCCcceEEEEeCCCCcCCCCCC-------cchHHHHHHHHHHHHHHHHhCCCeEEE---E-EcChH
Q psy6650 29 DNPSLREGL----KGCTTFRCVFILDPWFAGSSNVG-------INKWRFLLQCLEDLDINLRKLNSRLFV---I-RGQPA 93 (156)
Q Consensus 29 DN~aL~~A~----~~~~~vi~vfi~d~~~~~~~~~~-------~~r~~Fl~~sL~~L~~~L~~~g~~L~v---~-~g~~~ 93 (156)
...+|..|+ ..+.++..+++.++........+ .....-..+.|.++.+.+++.|++... . .|++.
T Consensus 35 s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~ 114 (294)
T 3loq_A 35 SFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPV 114 (294)
T ss_dssp GGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHH
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCChh
Confidence 344554444 34578999999876432110001 111233455677788888888988765 5 89999
Q ss_pred HHHHHHHHHcCcCeEEEcccCCchhHHH-H-HHHHHHHHhCCceEEEecCC
Q psy6650 94 DILPKLFKEWKTTCLTFEEDPEPFGKVR-D-QNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 94 ~~l~~l~~~~~~~~V~~~~~~~~~~~~~-d-~~v~~~l~~~~i~~~~~~~~ 142 (156)
+.| .+++.+++-|++.........+. . ....+.+...++++..+...
T Consensus 115 ~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 163 (294)
T 3loq_A 115 VEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHD 163 (294)
T ss_dssp HHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCC
T ss_pred Hhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCc
Confidence 999 88899999999876543322211 1 11233445557887766543
No 31
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=87.66 E-value=7.5 Score=29.36 Aligned_cols=118 Identities=9% Similarity=0.002 Sum_probs=70.7
Q ss_pred cHHHHHHHh----c--CCcceEEEEeCCCCcCC----CCCC--cchHHHHHHHHHHHHHHHHhCCC---eEEEEEcChHH
Q psy6650 30 NPSLREGLK----G--CTTFRCVFILDPWFAGS----SNVG--INKWRFLLQCLEDLDINLRKLNS---RLFVIRGQPAD 94 (156)
Q Consensus 30 N~aL~~A~~----~--~~~vi~vfi~d~~~~~~----~~~~--~~r~~Fl~~sL~~L~~~L~~~g~---~L~v~~g~~~~ 94 (156)
..+|..|.. . +.++..++++++..... .... ........+....|++-+++.|+ ...+..|++.+
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~ 256 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQ 256 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcHH
Confidence 456665543 3 56899999998743211 0001 01122333344455555567775 47888999999
Q ss_pred HHHHHHHHcCcCeEEEccc-CCchhHHHHHHHHH-HHHhCCceEEEecCCeeecC
Q psy6650 95 ILPKLFKEWKTTCLTFEED-PEPFGKVRDQNIMT-LCRELNIEVIARVSHTLYDL 147 (156)
Q Consensus 95 ~l~~l~~~~~~~~V~~~~~-~~~~~~~~d~~v~~-~l~~~~i~~~~~~~~~L~~~ 147 (156)
.|.+.+++.+++-|++... -+.......-.+.+ .+....+++-.+.......|
T Consensus 257 ~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~~~~p 311 (319)
T 3olq_A 257 VIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDGFTCP 311 (319)
T ss_dssp HHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTTCCCC
T ss_pred HHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCCCCCC
Confidence 9999999999999988754 33333333333433 44445788877765544443
No 32
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=86.64 E-value=5 Score=26.33 Aligned_cols=110 Identities=7% Similarity=0.048 Sum_probs=60.2
Q ss_pred cccHHHHHHHh----cCCcceEEEEeCC--CCcCCCCCCcchHHH----HHHHHHHHHHHHHhCCCe---EEEEEcChHH
Q psy6650 28 HDNPSLREGLK----GCTTFRCVFILDP--WFAGSSNVGINKWRF----LLQCLEDLDINLRKLNSR---LFVIRGQPAD 94 (156)
Q Consensus 28 ~DN~aL~~A~~----~~~~vi~vfi~d~--~~~~~~~~~~~r~~F----l~~sL~~L~~~L~~~g~~---L~v~~g~~~~ 94 (156)
....+|..|++ .+.++..+++.++ ...... .+.....+ ..++...|++-+++.|++ ..+..|++.+
T Consensus 14 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~ 92 (141)
T 1jmv_A 14 ESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGL-IDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSGSGDLGQ 92 (141)
T ss_dssp THHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCC-EEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEEEEEECHHH
T ss_pred hhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccc-cccchHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCHHH
Confidence 34456766654 3567889999833 211100 00000000 011223333334455654 5677899999
Q ss_pred HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHH-HHHhCCceEEEec
Q psy6650 95 ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMT-LCRELNIEVIARV 140 (156)
Q Consensus 95 ~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~-~l~~~~i~~~~~~ 140 (156)
.|.+.+++.+++-|++... .....+. -.+.. .+...++++..+.
T Consensus 93 ~I~~~a~~~~~dliV~G~~-~~~~~~l-gs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 93 VLSDAIEQYDVDLLVTGHH-QDFWSKL-MSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHHHHHHTTCCEEEEEEC-CCCHHHH-HHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHhcCCCEEEEeCC-Cchhhhh-cchHHHHHhcCCCCEEEee
Confidence 9999999999999988766 3322222 23333 3444467766543
No 33
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=85.68 E-value=4.2 Score=26.66 Aligned_cols=89 Identities=8% Similarity=-0.045 Sum_probs=53.1
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEe-CC--CCc-----CCCCCCcch---HHHHHHHHHHHHHHH--HhCC-CeE
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFIL-DP--WFA-----GSSNVGINK---WRFLLQCLEDLDINL--RKLN-SRL 85 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~-d~--~~~-----~~~~~~~~r---~~Fl~~sL~~L~~~L--~~~g-~~L 85 (156)
|.--....+|..|++ .+.++..++++ ++ ... ......... ..-..+.|.++ +.+ ...| +..
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 90 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLTGSTEIPGV 90 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHHSCCCCCCE
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhhccCCcceE
Confidence 333345567777764 34678889988 62 110 000000000 11123345555 442 3344 556
Q ss_pred EEEEcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 86 FVIRGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 86 ~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
.+..|++.+.|.+.+++.+++-|++...
T Consensus 91 ~~~~g~~~~~I~~~a~~~~~dliV~G~~ 118 (138)
T 1q77_A 91 EYRIGPLSEEVKKFVEGKGYELVVWACY 118 (138)
T ss_dssp EEECSCHHHHHHHHHTTSCCSEEEECSC
T ss_pred EEEcCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 7788999999999999999999998765
No 34
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=85.20 E-value=8.3 Score=29.54 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHH-cCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKE-WKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~-~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
.|+.+-+..+++.++++|..+.+... ++. +.+..+++. .+++.|++..... . ...+.+.+.+.||+++.
T Consensus 17 ~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~-~----~~~~~~~~~~~giPvV~ 91 (350)
T 3h75_A 17 TFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY-V----APQILRLSQGSGIKLFI 91 (350)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS-H----HHHHHHHHTTSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh-h----HHHHHHHHHhCCCcEEE
Confidence 47778888888999999999998864 332 356667775 6899988754221 1 12333455667999999
Q ss_pred ecCC
Q psy6650 139 RVSH 142 (156)
Q Consensus 139 ~~~~ 142 (156)
++..
T Consensus 92 ~~~~ 95 (350)
T 3h75_A 92 VNSP 95 (350)
T ss_dssp EESC
T ss_pred EcCC
Confidence 8754
No 35
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=84.49 E-value=9.8 Score=28.30 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC---hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ---PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~---~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
.|+.+-+..+++.+++.|..+.+...+ ....+.+++...+++.|++....... ...+.+.+.|++++.++.
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 23 STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTCCEEEESC
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCCCEEEECC
Confidence 488888999999999999999987643 22345566666789998876433222 122345567999998876
Q ss_pred C
Q psy6650 142 H 142 (156)
Q Consensus 142 ~ 142 (156)
.
T Consensus 97 ~ 97 (294)
T 3qk7_A 97 S 97 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=83.13 E-value=9.7 Score=26.64 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHc--CcCeEEEccc-CCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCC
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEW--KTTCLTFEED-PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQ 149 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~ 149 (156)
.+++...++|+.+.+++.+.+..|.+.+.+. +++.|+.|.. |+.... .++++++..+++++.++-..++..++
T Consensus 35 ~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 110 (146)
T 1h05_A 35 LIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHAREE 110 (146)
T ss_dssp HHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHHTCCSCEEEEESSCGGGSCG
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 3444445779999999988776666555542 3677888743 444443 45566666799999999999999888
Q ss_pred CCCCC
Q psy6650 150 LKPDS 154 (156)
Q Consensus 150 l~~~~ 154 (156)
++..+
T Consensus 111 FRh~S 115 (146)
T 1h05_A 111 FRRHS 115 (146)
T ss_dssp GGGCC
T ss_pred ccccc
Confidence 77643
No 37
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=82.75 E-value=10 Score=26.49 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHc--CcCeEEEccc-CCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCC
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEW--KTTCLTFEED-PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQ 149 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~ 149 (156)
.+++...++|+.+.+++.+.+..|.+.+.+. +.+.|+.|.. |+.... .++++++..+++++.++-+.++..++
T Consensus 33 ~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 108 (143)
T 1gqo_A 33 DLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY----AIRDAVSSISLPVVEVHLSNLYAREE 108 (143)
T ss_dssp HHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSCG
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 3334445669999999988887766666553 5778888843 444443 35566666789999999999999888
Q ss_pred CCCCC
Q psy6650 150 LKPDS 154 (156)
Q Consensus 150 l~~~~ 154 (156)
++..+
T Consensus 109 FRh~S 113 (143)
T 1gqo_A 109 FRHQS 113 (143)
T ss_dssp GGGCC
T ss_pred ccccc
Confidence 76543
No 38
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=82.61 E-value=3.6 Score=28.38 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCeE--EEEEcChHHHHHHHHHHcCcCeEEEcccCC-chhHHHHHHH-HHHHHhCCceEEEecC
Q psy6650 68 LQCLEDLDINLRKLNSRL--FVIRGQPADILPKLFKEWKTTCLTFEEDPE-PFGKVRDQNI-MTLCRELNIEVIARVS 141 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L--~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~~d~~v-~~~l~~~~i~~~~~~~ 141 (156)
.+.|..+.+.+...|+.. .+..|++.+.|.+.+++.+++-|++...-. .......-.+ .+.+...++++..+..
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~~ 163 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKR 163 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEcC
Confidence 345666666677778764 467899999999999999999998876532 2222111122 2344445677776654
No 39
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=82.00 E-value=12 Score=26.79 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=51.8
Q ss_pred HhCCCeEEEEEcChHHHHHHHHHH---cCcCeEEEccc-CCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCC
Q psy6650 79 RKLNSRLFVIRGQPADILPKLFKE---WKTTCLTFEED-PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPD 153 (156)
Q Consensus 79 ~~~g~~L~v~~g~~~~~l~~l~~~---~~~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~ 153 (156)
.++|+.+.+++.+.+..|.+.+.+ .+++.|+.|.. |+.... .+++++...+++++.++-..++..+.++..
T Consensus 55 ~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~FRh~ 129 (167)
T 3kip_A 55 KNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV----GIRDALLGTAIPFIEVHITNVHQREPFRHQ 129 (167)
T ss_dssp TCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH----HHHHHHHHTTCCEEEEESSCGGGSCGGGGC
T ss_pred ccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccH----HHHHHHHhcCCCEEEEEcCCccccccchhc
Confidence 457899999998887776666654 35788888853 444443 344556666899999999999988877654
No 40
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=80.54 E-value=5.4 Score=30.71 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=48.8
Q ss_pred EEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHH--HHHHHHHcCcCeE
Q psy6650 45 CVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADI--LPKLFKEWKTTCL 108 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~--l~~l~~~~~~~~V 108 (156)
.+|+-|.... ++|.+.+..+.+-+.+.-+.|.+.|..++|+.+++... +..+-+.+++--|
T Consensus 52 ~iy~~D~a~~---PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvi 114 (274)
T 3uhf_A 52 IIYYGDTARV---PYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVY 114 (274)
T ss_dssp EEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEE
T ss_pred EEEEecCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEE
Confidence 4788886433 68999999999988888899999999999999998873 6777777665544
No 41
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=80.43 E-value=4.3 Score=29.20 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=32.1
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
+.|++.|+++.|+.|++...+..++++.+++.++...
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~ 98 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQ 98 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCC
Confidence 4567789999999999999999999999999887654
No 42
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=80.08 E-value=13 Score=26.08 Aligned_cols=78 Identities=8% Similarity=0.042 Sum_probs=56.6
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHc--C-cCeEEEccc-CCchhHHHHHHHHHHHHhCCceEEEecCCeeecCC
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEW--K-TTCLTFEED-PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLD 148 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~-~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~ 148 (156)
.+++...++|+.+.+++.+.+..|.+.+.+. + ++.|+.|.. |+.... .++++++..+++++.++-+.++..+
T Consensus 32 ~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 107 (149)
T 2uyg_A 32 LCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY----ALLDAIRAQPLPVVEVHLTNLHARE 107 (149)
T ss_dssp HHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 3444455779999999998887777776653 2 678888843 445543 3556666679999999999999988
Q ss_pred CCCCCC
Q psy6650 149 QLKPDS 154 (156)
Q Consensus 149 ~l~~~~ 154 (156)
.++..+
T Consensus 108 ~FRh~S 113 (149)
T 2uyg_A 108 EFRRHS 113 (149)
T ss_dssp GGGGCC
T ss_pred cccccc
Confidence 876543
No 43
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=79.52 E-value=12 Score=28.99 Aligned_cols=74 Identities=9% Similarity=-0.050 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeE-EEcccCCc--h------hHHHHHHHHHHHHhCCceEEEe
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL-TFEEDPEP--F------GKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V-~~~~~~~~--~------~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
+.|.+.-+.|++.||+..++.....+.+ +.+.+.|++.| +....|+- . +.++.....+...+.|+.|..-
T Consensus 142 ~~L~~~i~~L~~~GIrVSLFIDpd~~qI-~aA~~~GAd~IELhTG~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~VnAG 220 (278)
T 3gk0_A 142 DAVRAACKQLADAGVRVSLFIDPDEAQI-RAAHETGAPVIELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVNAG 220 (278)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCHHHH-HHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHhCcCEEEEecchhhccCCchhHHHHHHHHHHHHHHHHHcCCEEecC
Confidence 4556666677889999888876555555 57888999988 33333321 1 2222222223344578988876
Q ss_pred cCCe
Q psy6650 140 VSHT 143 (156)
Q Consensus 140 ~~~~ 143 (156)
++=+
T Consensus 221 HGL~ 224 (278)
T 3gk0_A 221 HGLH 224 (278)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 6543
No 44
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=79.34 E-value=4.7 Score=28.52 Aligned_cols=39 Identities=15% Similarity=-0.008 Sum_probs=33.5
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 74 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
+=+.|++.|+++.++.|.+...+..++++.+++.++...
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~ 92 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR 92 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc
Confidence 445677889999999999999999999999999887664
No 45
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=78.95 E-value=12 Score=25.87 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCCeEE---EEEcChHHHHHHHHHHcC--cCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 68 LQCLEDLDINLRKLNSRLF---VIRGQPADILPKLFKEWK--TTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~---v~~g~~~~~l~~l~~~~~--~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.|..--+.|+..|++-. +..++|...|...+.+.+ ++.|+....+-.-+.-.-..+....++.|+++..+.
T Consensus 57 ~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~~gvPVlhl~ 134 (138)
T 2iel_A 57 EEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIHVI 134 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHhcCCCEEEEe
Confidence 4556666666778888755 888999999999999999 999877766544333322233333333588887654
No 46
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=78.92 E-value=14 Score=26.52 Aligned_cols=76 Identities=9% Similarity=0.127 Sum_probs=53.2
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHHc--CcCeEEEccc-CCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCC
Q psy6650 74 LDINLRKLNSRLFVIRGQPADILPKLFKEW--KTTCLTFEED-PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150 (156)
Q Consensus 74 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l 150 (156)
+++...++|+.+.+++.+.+..|.+.+.+. +++.|+.|.. |+.... +++++++..+++++.++-..++..+.+
T Consensus 62 l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~F 137 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHAREEF 137 (172)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHTTCCSCEEEEESSCTTSSCGG
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH----HHHHHHHhCCCCEEEEEcCCchhcccc
Confidence 333444689999999988776666655542 4677888743 444443 455666667899999999999888877
Q ss_pred CCC
Q psy6650 151 KPD 153 (156)
Q Consensus 151 ~~~ 153 (156)
+..
T Consensus 138 Rhh 140 (172)
T 3n8k_A 138 RRH 140 (172)
T ss_dssp GGC
T ss_pred ccc
Confidence 654
No 47
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=78.35 E-value=19 Score=26.86 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=65.8
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEE--E-EcChHHHH
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFV--I-RGQPADIL 96 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v--~-~g~~~~~l 96 (156)
|.--....+|..|+. .+.++..+++.+| .... +.|.++.+.++..|++... . .|++.+.|
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~---------~~~~----~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i 81 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR---------RDHS----AALNDLAQELREEGYSVSTNQAWKDSLHQTI 81 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS---------SCCH----HHHHHHHHHHHHTTCCEEEEEECSSSHHHHH
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCc---------HHHH----HHHHHHHHHHhhCCCeEEEEEEeCCCHHHHH
Confidence 666666788887774 3567888899874 1112 2345556666677877554 3 47899999
Q ss_pred HHHHHHcCcCeEEEcccCCc-hhHH-HHHHHHHHHHhCCceEEEec
Q psy6650 97 PKLFKEWKTTCLTFEEDPEP-FGKV-RDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 97 ~~l~~~~~~~~V~~~~~~~~-~~~~-~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.+++.+++-|++...... .... .-....+.+...++++..+.
T Consensus 82 ~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 82 IAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp HHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEec
Confidence 99999999999988755322 1110 01122234445578877776
No 48
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=78.33 E-value=3 Score=30.44 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=34.0
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 74 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
+=+.|++.|+.+.|+.|++......++++.+++.++...
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~ 122 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ 122 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc
Confidence 556778889999999999999999999999999888765
No 49
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=78.06 E-value=9.5 Score=29.10 Aligned_cols=62 Identities=6% Similarity=-0.042 Sum_probs=49.8
Q ss_pred EEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHc-CcCeEE
Q psy6650 45 CVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEW-KTTCLT 109 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~-~~~~V~ 109 (156)
.+|+-|.... ++|.+.+..+.+-+.+.-+.|.+.|..++|+.+++.. .+..+-+.+ ++--|-
T Consensus 35 ~iy~~D~a~~---PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 35 IIYFGDIARI---PYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp EEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred EEEecCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 5788886433 6898999999999999999999999999999998876 567777777 565444
No 50
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=77.82 E-value=16 Score=25.78 Aligned_cols=78 Identities=10% Similarity=0.035 Sum_probs=55.8
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHc--CcCeEEEccc-CCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCC
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEW--KTTCLTFEED-PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQ 149 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~ 149 (156)
.+++...++|+.+.+++.+.+..|.+.+.+. +++.|+.|.. |+.... .++++++..+++++.++-+.++..++
T Consensus 34 ~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 109 (154)
T 1uqr_A 34 HLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSV----AIRDALLAVSIPFIEVHLSNVHAREP 109 (154)
T ss_dssp HHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCH----HHHHHHHHHTCCEEEEESSCGGGSCG
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 3444455779999999998887777777653 5678888853 333333 45556666689999999999999888
Q ss_pred CCCCC
Q psy6650 150 LKPDS 154 (156)
Q Consensus 150 l~~~~ 154 (156)
++..+
T Consensus 110 FRh~S 114 (154)
T 1uqr_A 110 FRHHS 114 (154)
T ss_dssp GGSCC
T ss_pred ccccc
Confidence 77654
No 51
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=77.73 E-value=15 Score=27.06 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcC----hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQ----PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
|+.+-+..+++.+++.|..+.+...+ ....+.+++...+++.|++....... ...+.+.+.|++++.++.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 24 FTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------PRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------HHHHHHhhCCCCEEEECC
Confidence 77888889999999999999887532 22345566666789998775322111 122345567999998875
Q ss_pred C
Q psy6650 142 H 142 (156)
Q Consensus 142 ~ 142 (156)
.
T Consensus 98 ~ 98 (288)
T 3gv0_A 98 S 98 (288)
T ss_dssp C
T ss_pred c
Confidence 4
No 52
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=77.17 E-value=19 Score=27.34 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeE-EEcccCCc--hhHHHHHHH------HHHHHhCCceEEEe
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL-TFEEDPEP--FGKVRDQNI------MTLCRELNIEVIAR 139 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V-~~~~~~~~--~~~~~d~~v------~~~l~~~~i~~~~~ 139 (156)
+.|.+.-+.|++.||+..++.....+.+. .+.+.|++.| +.+..|+- ...+++..+ .+...+.|+.+..-
T Consensus 114 ~~l~~~i~~L~~~GIrVSLFIDpd~~qi~-aA~~~GA~~IELhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnAG 192 (243)
T 1m5w_A 114 DKMRDACKRLADAGIQVSLFIDADEEQIK-AAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNAG 192 (243)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCHHHHH-HHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEecC
Confidence 55666667778899999998876666664 7888999988 44444421 111222222 23344579999887
Q ss_pred cCCee
Q psy6650 140 VSHTL 144 (156)
Q Consensus 140 ~~~~L 144 (156)
++=++
T Consensus 193 HgL~y 197 (243)
T 1m5w_A 193 HGLTY 197 (243)
T ss_dssp SSCCT
T ss_pred CCCCH
Confidence 76443
No 53
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=76.20 E-value=20 Score=26.15 Aligned_cols=71 Identities=8% Similarity=0.003 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC--hHH--HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ--PAD--ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+-+..+++.+++.|..+.+...+ ... .+.+.+...+++.|++..... +. ..+.+.+.|++++.++
T Consensus 20 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~-~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 20 YFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------PQ-TVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------HH-HHHHHHTTSSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------HH-HHHHHHHCCCCEEEEe
Confidence 477888889999999999999988643 221 222333345899887765433 12 2344556799999886
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 93 ~~ 94 (276)
T 3jy6_A 93 RE 94 (276)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 54
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=75.57 E-value=21 Score=26.10 Aligned_cols=73 Identities=8% Similarity=0.093 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++. +.+..+.. .+++.|++.... . ... ....+.+.+.|++++.+
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~-~--~~~-~~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 18 DWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA-QKPDAIIEQLGN-L--DVL-NPWLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HCCSEEEEESSC-H--HHH-HHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCC-h--hhh-HHHHHHHHHCCCcEEEe
Confidence 47778888999999999999998863 332 33444444 589998865321 1 111 22234455679999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 93 ~~~ 95 (291)
T 3l49_A 93 DTA 95 (291)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 55
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=75.48 E-value=9.8 Score=29.05 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=48.9
Q ss_pred EEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHcCcCeEE
Q psy6650 45 CVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEWKTTCLT 109 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V~ 109 (156)
.+|+-|.... ++|.+....+.+-..+.-+.|.+.|..++|+.+++.. .+..+-+.+++--|-
T Consensus 33 ~iy~~D~a~~---PYG~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 33 VYYLGDTARC---PYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp EEEEECGGGC---CCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred EEEEeCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 5788886433 6788888888888888888899999999999998877 467777776665443
No 56
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=75.31 E-value=14 Score=25.64 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=31.6
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 74 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
+=+.|++.|+++.|+.|.+...+..+++..+++ ++...
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~ 84 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI 84 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC
Confidence 445677889999999999999999999999999 55543
No 57
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=74.06 E-value=20 Score=25.19 Aligned_cols=76 Identities=9% Similarity=0.078 Sum_probs=53.2
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHH--cCcCeEEEccc-CCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCC
Q psy6650 74 LDINLRKLNSRLFVIRGQPADILPKLFKE--WKTTCLTFEED-PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQL 150 (156)
Q Consensus 74 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--~~~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l 150 (156)
+++...++|+.+.+++.+.+..|.+.+.+ .+++.|+.|.. |+..... +++++...+++++.++-..++..+.+
T Consensus 41 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvA----lrDAl~~~~~P~VEVHiSNi~aRE~F 116 (153)
T 3lwz_A 41 LEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVA----LRDALLGVQIPFIEIHLSNVHAREPF 116 (153)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHH----HHHHHHHHTCCEEEEESSCGGGSCGG
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHH----HHHHHHhcCCCEEEEEcCCccccchh
Confidence 33334467999999998888777666665 35778888843 4445443 44445555899999999999988887
Q ss_pred CCC
Q psy6650 151 KPD 153 (156)
Q Consensus 151 ~~~ 153 (156)
+..
T Consensus 117 Rh~ 119 (153)
T 3lwz_A 117 RHH 119 (153)
T ss_dssp GGC
T ss_pred hhc
Confidence 754
No 58
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=73.77 E-value=22 Score=25.55 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=55.1
Q ss_pred HHHHHHH--hCCCeEEEEEcChHHHHHHHHHHc--C-cCeEEEccc-CCchhHHHHHHHHHHHHhCCceEEEecCCeeec
Q psy6650 73 DLDINLR--KLNSRLFVIRGQPADILPKLFKEW--K-TTCLTFEED-PEPFGKVRDQNIMTLCRELNIEVIARVSHTLYD 146 (156)
Q Consensus 73 ~L~~~L~--~~g~~L~v~~g~~~~~l~~l~~~~--~-~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~ 146 (156)
.+++... ++|+.+.++..+.+..|.+.+.+. . ++.|+.|.. |+.... .+++++...+++++.++-+.++.
T Consensus 42 ~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSv----AlrDAl~~v~~P~VEVHiSNi~a 117 (176)
T 2c4w_A 42 IMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSI----AIADAIMLAGKPVIEVHLTNIQA 117 (176)
T ss_dssp HHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCH----HHHHHHHTSSSCEEEEESSCGGG
T ss_pred HHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCccc
Confidence 3344445 678899999988877666666543 3 778888843 444543 35566666789999999999999
Q ss_pred CCCCCCCC
Q psy6650 147 LDQLKPDS 154 (156)
Q Consensus 147 ~~~l~~~~ 154 (156)
.++++..+
T Consensus 118 RE~FRh~S 125 (176)
T 2c4w_A 118 REEFRKNS 125 (176)
T ss_dssp SCGGGTCC
T ss_pred cccccccc
Confidence 88887653
No 59
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=73.44 E-value=14 Score=27.17 Aligned_cols=72 Identities=8% Similarity=0.076 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChHH--HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPAD--ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~--~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+-+..+++.+++.|..+.+... ++.. .+.+.+...+++.|++...... ....+.+.+.|++++.++
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~------~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 21 VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE------HDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC------CHHHHHSSCTTSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC------hHHHHHhhccCCCEEEEe
Confidence 47788888999999999999998864 2322 1223344568998877544321 122344556799999887
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 95 ~~ 96 (291)
T 3egc_A 95 RE 96 (291)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 60
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=72.47 E-value=26 Score=25.65 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcChH-H---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPA-D---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+-+..+++.+++.|..+.+...+.. + .+.+.+...+++.|++....... ...+.+.+.|++++.++
T Consensus 26 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 26 PFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND------RIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC------HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHHCCCCEEEEC
Confidence 37778888899999999999988764432 2 23344455689998775332211 12344556799999887
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 100 ~~ 101 (292)
T 3k4h_A 100 KP 101 (292)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 61
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=72.46 E-value=25 Score=27.13 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
.+.++=+.|++.|+++.|+.+.+...+..+++..+++.++.+.
T Consensus 183 g~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 183 GLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred CHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 5567777889999999999999999999999999998876643
No 62
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=72.14 E-value=25 Score=26.14 Aligned_cols=73 Identities=7% Similarity=-0.008 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcChH----HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPA----DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~----~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+-+..+++.++++|..+.+...+.. ..+.+.+...+++.|++....... ...+.+.+.|++++.++
T Consensus 40 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 40 PFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD------PIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC------HHHHHHHHTTCCEEEES
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc------HHHHHHHHcCCCEEEEC
Confidence 48888888999999999999988764322 223344555689998775432211 12244556799999887
Q ss_pred CCe
Q psy6650 141 SHT 143 (156)
Q Consensus 141 ~~~ 143 (156)
...
T Consensus 114 ~~~ 116 (305)
T 3huu_A 114 KSL 116 (305)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 63
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=71.95 E-value=23 Score=24.96 Aligned_cols=78 Identities=6% Similarity=-0.024 Sum_probs=54.6
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHc--CcCeEEEccc-CCchhHHHHHHHHHHHHhCC-ceEEEecCCeeecCC
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEW--KTTCLTFEED-PEPFGKVRDQNIMTLCRELN-IEVIARVSHTLYDLD 148 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~V~~~~~-~~~~~~~~d~~v~~~l~~~~-i~~~~~~~~~L~~~~ 148 (156)
.+++...++|+.+.+++.+.+..|.+.+.+. +++.|+.|.. |+... -.++++++..+ ++++.++-..++..+
T Consensus 39 ~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtS----vAlrDAl~~v~~~P~VEVHiSNi~aRE 114 (156)
T 1gtz_A 39 LCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTS----VAILDALNTCDGLPVVEVHISNIHQRE 114 (156)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHC----HHHHHHHHTSTTCCEEEEESSCGGGSC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhcccc----HHHHHHHHhcCCCCEEEEEecCccccc
Confidence 3444455779999999988776666655542 4778888853 23333 24556666667 999999999999988
Q ss_pred CCCCCC
Q psy6650 149 QLKPDS 154 (156)
Q Consensus 149 ~l~~~~ 154 (156)
+++..+
T Consensus 115 ~FRh~S 120 (156)
T 1gtz_A 115 PFRHHS 120 (156)
T ss_dssp GGGSCC
T ss_pred cccccc
Confidence 877654
No 64
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=71.46 E-value=19 Score=27.01 Aligned_cols=87 Identities=13% Similarity=0.005 Sum_probs=49.4
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCCcchHHH---HHHHHHHHHHHHHh--CC--CeEEEEEcCh
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGINKWRF---LLQCLEDLDINLRK--LN--SRLFVIRGQP 92 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~~~r~~F---l~~sL~~L~~~L~~--~g--~~L~v~~g~~ 92 (156)
|..-....+|..|.. .+.++..++++++..... ..+.....+ ..+.|.++.+.+.+ .| +...+..|++
T Consensus 179 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~ 257 (309)
T 3cis_A 179 DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE-WPGIDWPATQSMAEQVLAERLAGWQERYPNVAITRVVVRDQP 257 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT-CSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEESSCH
T ss_pred CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC-CCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCCH
Confidence 544445566766653 356899999987642210 011111112 12223333333332 24 4466778999
Q ss_pred HHHHHHHHHHcCcCeEEEccc
Q psy6650 93 ADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~ 113 (156)
.+.|.+.++ +++-|++...
T Consensus 258 ~~~I~~~a~--~adliV~G~~ 276 (309)
T 3cis_A 258 ARQLVQRSE--EAQLVVVGSR 276 (309)
T ss_dssp HHHHHHHHT--TCSEEEEESS
T ss_pred HHHHHHhhC--CCCEEEECCC
Confidence 999999987 8998887654
No 65
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=71.27 E-value=24 Score=27.96 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
.+.++=+.|++.|..+.++.|.+......+++.++++.++.+
T Consensus 260 g~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 301 (415)
T 3p96_A 260 GARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAAN 301 (415)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeee
Confidence 455677888999999999999988899999999999988764
No 66
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=71.20 E-value=29 Score=25.66 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc----ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG----QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g----~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~ 137 (156)
.|+.+-+..+++.++++|..+.+... ++.. .+..++. .+++.|++......... ..+ +.+.+.||+++
T Consensus 16 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~---~~~-~~~~~~giPvV 90 (297)
T 3rot_A 16 PYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA-TYPSGIATTIPSDTAFS---KSL-QRANKLNIPVI 90 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH-TCCSEEEECCCCSSTTH---HHH-HHHHHHTCCEE
T ss_pred chHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHH---HHH-HHHHHCCCCEE
Confidence 47778888889999999999998863 3332 3444444 47998887533222111 122 33445699999
Q ss_pred EecCC
Q psy6650 138 ARVSH 142 (156)
Q Consensus 138 ~~~~~ 142 (156)
.++..
T Consensus 91 ~~~~~ 95 (297)
T 3rot_A 91 AVDTR 95 (297)
T ss_dssp EESCC
T ss_pred EEcCC
Confidence 88754
No 67
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=70.70 E-value=25 Score=25.84 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCe----------EEE-cccC---CchhHHHHHHHHHHHHhCCce
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTC----------LTF-EEDP---EPFGKVRDQNIMTLCRELNIE 135 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----------V~~-~~~~---~~~~~~~d~~v~~~l~~~~i~ 135 (156)
....|++ ++.|+.+.+..|.+...+..+.++.+.+. |+. +... .+......+++.+.+++.++.
T Consensus 24 ~~~al~~--~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~ 101 (268)
T 1nf2_A 24 DRRNIEK--LSRKCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVH 101 (268)
T ss_dssp HHHHHHH--HTTTSEEEEECSSCHHHHHHHHHHHSSSCCCEEEGGGTEEEETTTEEEEECCBCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHH--HhCCCEEEEECCCChHHHHHHHHHhCCCCCeEEEeCCeEEECCCCCEEEecCCCHHHHHHHHHHHHhCCCE
Confidence 3444554 57899999999999888888888877753 332 1111 122334456677777767777
Q ss_pred EEEecCCeee
Q psy6650 136 VIARVSHTLY 145 (156)
Q Consensus 136 ~~~~~~~~L~ 145 (156)
+..+.+...+
T Consensus 102 ~~~~~~~~~~ 111 (268)
T 1nf2_A 102 WQAYIDDVLY 111 (268)
T ss_dssp EEEECSSCEE
T ss_pred EEEEECCEEE
Confidence 7766555443
No 68
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=70.65 E-value=28 Score=25.28 Aligned_cols=71 Identities=7% Similarity=-0.063 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC--hHH--HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ--PAD--ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+-+..+++.+++.|..+.+...+ +.. .+.+.+...+++.|++.. .. ...+...+.+.|++++.++
T Consensus 21 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~---~~----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 21 PFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA---FN----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG---GG----HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec---CC----hHHHHHHHHcCCCCEEEEe
Confidence 477888889999999999999987643 222 223334456899998754 11 1223215566799999887
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 54
No 69
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=70.56 E-value=21 Score=23.86 Aligned_cols=39 Identities=23% Similarity=0.074 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
++=+.|++.|+++.++.|.+...+..++++.++...+-.
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~ 81 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTG 81 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccC
Confidence 344456678999999999998889999999999876644
No 70
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=70.26 E-value=25 Score=28.42 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH--------cCcCeEEEcccCCchhHHHHHHHHHHHHhCCc
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKE--------WKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--------~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i 134 (156)
-++..+.++=+.|++.|+.+-|..+++.+.+...+++ .++..++.+.. |.. +.+.+.+++.|+
T Consensus 256 ~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~K--PKp----~~l~~al~~Lgl 326 (387)
T 3nvb_A 256 KAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWE--NKA----DNIRTIQRTLNI 326 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESS--CHH----HHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCC--CcH----HHHHHHHHHhCc
Confidence 4678889999999999999999999998888888876 45556655432 222 234455555455
No 71
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=69.73 E-value=22 Score=26.79 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=46.5
Q ss_pred EEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHcCcCeEE
Q psy6650 45 CVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEWKTTCLT 109 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V~ 109 (156)
.+|+-|.... ++|.+....+.+-+.+.-+.|.+.|..++++.+++.. .+..+.+.+++-.|-
T Consensus 31 ~iy~~D~~~~---Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 31 IIYLGDTARC---PYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp EEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred EEEecCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 5788886433 4677777788888888888899999999999988876 577777766554443
No 72
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=69.69 E-value=31 Score=25.47 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcCh-H---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQP-A---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~-~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+-+..+++.+++.|..+.+...+. . ..+.+.+...+++.|++....... ...+.+.+.|++++.++
T Consensus 25 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~------~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 25 PFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND------PIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC------HHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh------HHHHHHHhCCCCEEEEC
Confidence 4888889999999999999998876432 1 123344555689998875332211 22344556799999887
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 99 ~~ 100 (295)
T 3hcw_A 99 KP 100 (295)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 73
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=68.98 E-value=30 Score=25.03 Aligned_cols=68 Identities=6% Similarity=0.092 Sum_probs=41.8
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEE-cccC----------CchhHHHHHHHHHHHHhCCceEEEecCCe
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF-EEDP----------EPFGKVRDQNIMTLCRELNIEVIARVSHT 143 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~-~~~~----------~~~~~~~d~~v~~~l~~~~i~~~~~~~~~ 143 (156)
++|++.|+.+.+..|.+...+..+.++.+.+.+++ |..+ .+.......++.+.+++.|+.+..+.+..
T Consensus 30 ~~l~~~G~~~~~aTGR~~~~~~~~~~~l~~~~~i~~nGa~i~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (258)
T 2pq0_A 30 RRLKQSGVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQPLRREKVRALTEEAHKNGHPLVFMDAEK 108 (258)
T ss_dssp HHHHHTTCEEEEECSSCGGGSHHHHHHHTCCCEEEGGGTEEEETTEEEEECCCCHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHhcCCCEEEECCCCEEEECCEEEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 34556799999999998877777777766543321 1100 12223444566677777788777664443
No 74
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=68.45 E-value=13 Score=32.52 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=41.9
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
++|++.|+.+.++.|+.......++++.+++.++..-. |..+. + +.+.+++.|-.+-.+.|
T Consensus 564 ~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~~--P~~K~--~-~v~~l~~~g~~V~~vGD 624 (736)
T 3rfu_A 564 LELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIM--PEDKS--R-IVSELKDKGLIVAMAGD 624 (736)
T ss_dssp HHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSCC--HHHHH--H-HHHHHHHHSCCEEEEEC
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEecC--HHHHH--H-HHHHHHhcCCEEEEEEC
Confidence 44556799999999999999999999999999887653 44332 2 23344444544554443
No 75
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=68.22 E-value=16 Score=25.59 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
.+.++-+.|++.|+++.++.+.+...+..+.+..++ +.|+...+.
T Consensus 107 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~~~ 155 (231)
T 3kzx_A 107 GAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDSIIGSGDT 155 (231)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEETSS
T ss_pred CHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchhheeeEEccccc
Confidence 344666788889999999988887778888888764 566666554
No 76
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=68.16 E-value=37 Score=25.86 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
.+.++-+.|++.|+++.++.|........+.++.+++.++.+
T Consensus 182 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 223 (335)
T 3n28_A 182 ELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSN 223 (335)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEee
Confidence 345566788899999999999888888899999999877654
No 77
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=67.91 E-value=22 Score=23.83 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=32.2
Q ss_pred HHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 75 DINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 75 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
=+.|++.|+++.++.|.+......++++.++..++...
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~ 77 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGV 77 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSC
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeeccc
Confidence 35566789999999999988999999999999887664
No 78
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=67.59 E-value=18 Score=23.83 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 93 ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
.+.+.+++++++++.|+..-..... ...+++...|.+.|+++....+-
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~~--~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSASQ--VQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSCH--HHHHHHHHHHHTTTCEEEECCCH
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCH--HHHHHHHHHHHHcCCeEEECCCH
Confidence 3567889999999999887543332 34456777888889999877653
No 79
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=66.82 E-value=9.8 Score=27.92 Aligned_cols=111 Identities=11% Similarity=-0.004 Sum_probs=61.4
Q ss_pred ccHHHHHHHh----cCCcceEEEEeCCCCcC------CCCC-Cc----------chHHHHHHHHHHHHHHHHhCCCe--E
Q psy6650 29 DNPSLREGLK----GCTTFRCVFILDPWFAG------SSNV-GI----------NKWRFLLQCLEDLDINLRKLNSR--L 85 (156)
Q Consensus 29 DN~aL~~A~~----~~~~vi~vfi~d~~~~~------~~~~-~~----------~r~~Fl~~sL~~L~~~L~~~g~~--L 85 (156)
...+|..|+. .+.++..+++.++.... .... .. ....-..+.|..+.+.++..|++ .
T Consensus 13 s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~ 92 (268)
T 3ab8_A 13 ARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSALAAGVAVEA 92 (268)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 3456666653 35689999998753210 0000 00 00122344566677777777865 4
Q ss_pred EEEEcChHHHHHHHHHHcCcCeEEEcccCC--chhHHH-HHHHHHHHHhCCceEEEecC
Q psy6650 86 FVIRGQPADILPKLFKEWKTTCLTFEEDPE--PFGKVR-DQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 86 ~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~--~~~~~~-d~~v~~~l~~~~i~~~~~~~ 141 (156)
.+..|++.+.|.+. +.+++-|++...-. ...... -.-..+.+...++++..+..
T Consensus 93 ~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~ 149 (268)
T 3ab8_A 93 VLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPG 149 (268)
T ss_dssp EEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECS
T ss_pred EEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECC
Confidence 46689999999888 77899998875532 111100 01112333445677776653
No 80
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=66.37 E-value=17 Score=28.70 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
.|+.+-+..+.+.+++.|..+.+...+......+.+...+++.|++... . ..+.+.+.+.|++++.++..
T Consensus 37 ~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~~--~------~~~~~~l~~~~iPvV~i~~~ 106 (412)
T 4fe7_A 37 AYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFD--D------KQIEQALADVDVPIVGVGGS 106 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEETT--C------HHHHHHHTTCCSCEEEEEEC
T ss_pred hhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEecC--C------hHHHHHHhhCCCCEEEecCC
Confidence 4777888888899999999998887554433334455568999988321 1 22344566679999988643
No 81
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=66.33 E-value=34 Score=24.62 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEE----cChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIR----GQPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~----g~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~ 137 (156)
.|+.+-+..+++.+++.|..+.+.. +++. +.+..++++.+++.|++........ ....+.+.+.|++++
T Consensus 13 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~----~~~~~~~~~~~ipvV 88 (276)
T 3ksm_A 13 AYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDL----TPSVAQYRARNIPVL 88 (276)
T ss_dssp THHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTT----HHHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHH----HHHHHHHHHCCCcEE
Confidence 3777888888999999999999875 2333 2455566553399998764321111 112234556799999
Q ss_pred EecCC
Q psy6650 138 ARVSH 142 (156)
Q Consensus 138 ~~~~~ 142 (156)
.++..
T Consensus 89 ~~~~~ 93 (276)
T 3ksm_A 89 VVDSD 93 (276)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 88754
No 82
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=66.29 E-value=39 Score=25.30 Aligned_cols=113 Identities=9% Similarity=-0.027 Sum_probs=61.1
Q ss_pred cccHHHHHHHh----cCCcceEEEEeCCCCcCCC--CCCcc----hHHHHHHHHHHHHHHHHhC-----CCe--EEEEEc
Q psy6650 28 HDNPSLREGLK----GCTTFRCVFILDPWFAGSS--NVGIN----KWRFLLQCLEDLDINLRKL-----NSR--LFVIRG 90 (156)
Q Consensus 28 ~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~--~~~~~----r~~Fl~~sL~~L~~~L~~~-----g~~--L~v~~g 90 (156)
....+|..|+. .+.++..++++++...... ..... ...-..+.|.++.+.+++. |++ ..+..|
T Consensus 31 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 110 (309)
T 3cis_A 31 AAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVPA 110 (309)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCSCEEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcccCCCceEEEEEecC
Confidence 34456666653 3568999999986432100 01110 1112234456666666654 655 445679
Q ss_pred ChHHHHHHHHHHcCcCeEEEcccCC-chhHH-HHHHHHHHHHhCCceEEEecCC
Q psy6650 91 QPADILPKLFKEWKTTCLTFEEDPE-PFGKV-RDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 91 ~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~-~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
++.+.|.+.++ +++-|++...-. ..... .-....+.+...++++..+...
T Consensus 111 ~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 162 (309)
T 3cis_A 111 AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDE 162 (309)
T ss_dssp CHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTT
T ss_pred CHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCC
Confidence 99999998886 688888765421 11110 0011123344457777766543
No 83
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=66.27 E-value=22 Score=24.99 Aligned_cols=41 Identities=7% Similarity=-0.011 Sum_probs=33.6
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCc
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEP 116 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~ 116 (156)
+.|++.|+++.++.|.+...+..+++..++..++...-+.+
T Consensus 56 ~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kpk~ 96 (191)
T 3n1u_A 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKR 96 (191)
T ss_dssp HHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSCSSCH
T ss_pred HHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCCCChH
Confidence 45678899999999999999999999999998776653333
No 84
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=66.26 E-value=20 Score=22.66 Aligned_cols=63 Identities=13% Similarity=0.113 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEE-cChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCC
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIR-GQPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~-g~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~ 133 (156)
.|-+++.-++.+.-|-+|+|+. |... ..++.-+++.++.-=+ -....|.|. .+++++.++..|
T Consensus 37 sqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydv-lkstdpeel--tqrvreflktag 103 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDV-LKSTDPEEL--TQRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEE-EECCCHHHH--HHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhh-hccCCHHHH--HHHHHHHHHhcc
Confidence 3667888888999999999875 5433 3455555555553211 123345554 367888887665
No 85
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=65.82 E-value=39 Score=25.14 Aligned_cols=63 Identities=13% Similarity=0.002 Sum_probs=47.3
Q ss_pred ceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHcCcCeE
Q psy6650 43 FRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEWKTTCL 108 (156)
Q Consensus 43 vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V 108 (156)
.-.+|+.|.... ++|.+....+.+.+.+.-+.|.+.|...+++.+++.. .+..+.+.+++-.|
T Consensus 26 ~~~iy~~D~~~~---Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvi 90 (255)
T 2jfz_A 26 DEIIYYGDSARV---PYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIV 90 (255)
T ss_dssp SEEEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEE
T ss_pred CCEEEEeCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEE
Confidence 445788887432 4677778888888888888899999999999888776 56777666655433
No 86
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=65.69 E-value=5.3 Score=32.11 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT 105 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 105 (156)
++....+|-+.|++.|+..+|+.|...+.+..++++.++
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~ 260 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNN 260 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTS
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCc
Confidence 457889999999999999999999999999999998653
No 87
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=65.30 E-value=38 Score=24.87 Aligned_cols=70 Identities=4% Similarity=-0.013 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC----hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ----PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+-+..+++.+++.|..+.+...+ ..+.+..+. ..+++.|++....... ..+ +.+.+ |++++.++
T Consensus 24 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~-----~~~-~~~~~-~iPvV~i~ 95 (289)
T 3k9c_A 24 PFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALM-RERCEAAILLGTRFDT-----DEL-GALAD-RVPALVVA 95 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHT-TTTEEEEEEETCCCCH-----HHH-HHHHT-TSCEEEES
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH-hCCCCEEEEECCCCCH-----HHH-HHHHc-CCCEEEEc
Confidence 478888889999999999999887532 233444443 4578888765432221 122 33444 89999887
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 96 ~~ 97 (289)
T 3k9c_A 96 RA 97 (289)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 88
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=65.05 E-value=4.8 Score=29.64 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEE---cChHHHHHHHHHHcCcCeEEEcccCC---chhHHHHHHHHHHHHhCCceEEE
Q psy6650 69 QCLEDLDINLRKLNSRLFVIR---GQPADILPKLFKEWKTTCLTFEEDPE---PFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~---g~~~~~l~~l~~~~~~~~V~~~~~~~---~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
++|.-..+..+++||.=+|+. |++...+.+.+ .++.-|.+...++ |.+...+.++++.|++.|+++.+
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 566666777778899877764 66665444444 3455566555554 44556677888999999998864
No 89
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=64.96 E-value=38 Score=24.71 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC--hH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ--PA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+...+ +. +.+..++ ..+++.|++......... ...+.+.+.|++++.+
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~~----~~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 21 EFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFV-HLKVDAIFITTLDDVYIG----SAIEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHH-HTTCSEEEEECSCTTTTH----HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHHHH----HHHHHHHHcCCCEEEe
Confidence 477888889999999999999988643 32 2344444 458898877543222111 1223445579999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 96 ~~~ 98 (293)
T 3l6u_A 96 DRM 98 (293)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 90
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=64.47 E-value=17 Score=24.29 Aligned_cols=45 Identities=4% Similarity=-0.082 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEE
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 110 (156)
-.+..|.++.+++++.|+.++.+..++.+.+.++++++++.-.+.
T Consensus 53 ~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 97 (163)
T 3gkn_A 53 TEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLV 97 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 446788999999999999999998888899999999988764444
No 91
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=64.43 E-value=36 Score=24.34 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCeEEEEE--cChHHHHHHHHHHc--CcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 70 CLEDLDINLRKLNSRLFVIR--GQPADILPKLFKEW--KTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~--g~~~~~l~~l~~~~--~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
++.-++..+++.|-.+.|.. |....++..++.+. ++..|+++....+. +..+.+++.+++.|++++.+...
T Consensus 32 ~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~--e~~~~v~~~~~~~gi~~~v~~~~ 106 (215)
T 1sur_A 32 AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFP--ETYRFIDELTDKLKLNLKVYRAT 106 (215)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCH--HHHHHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCH--HHHHHHHHHHHHhCCcEEEEeCC
Confidence 44456666666676666653 55566777777764 56677777766543 33456777788889999877543
No 92
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=64.11 E-value=40 Score=24.71 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=45.5
Q ss_pred HHHhCCCeEEEEEcChHHHHHHHHHHcCcC-eEEE-cc--------cC---CchhHHHHHHHHHHHHhCCceEEEecCCe
Q psy6650 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTT-CLTF-EE--------DP---EPFGKVRDQNIMTLCRELNIEVIARVSHT 143 (156)
Q Consensus 77 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~-~V~~-~~--------~~---~~~~~~~d~~v~~~l~~~~i~~~~~~~~~ 143 (156)
+|++.|+.+.+..|.+...+..+.+..+.+ .+++ |- .. .+.......++.+.+++.++.+..+.+..
T Consensus 34 ~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (290)
T 3dnp_A 34 YVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEKY 113 (290)
T ss_dssp HHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSEECCCCHHHHHHHHHHHHTSSCEEEEECSSC
T ss_pred HHHHCCCEEEEECCCChHHHHHHHHHcCCCCeEEEcCCeEEEcCCCCEEEecCCCHHHHHHHHHHHHHcCceEEEEECCc
Confidence 345679999999999988888888888765 2222 11 00 11234445667777887888887776654
Q ss_pred ee
Q psy6650 144 LY 145 (156)
Q Consensus 144 L~ 145 (156)
.+
T Consensus 114 ~~ 115 (290)
T 3dnp_A 114 SI 115 (290)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 93
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=64.05 E-value=10 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=31.2
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 74 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
+=+.|++.|+.+.+..|.+...+..++++.++..++..
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~ 80 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLG 80 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecC
Confidence 34456678999999999998889999999999887643
No 94
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=63.61 E-value=29 Score=25.25 Aligned_cols=75 Identities=16% Similarity=0.011 Sum_probs=50.6
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEE--EEEcChHHHHH
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLF--VIRGQPADILP 97 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~--v~~g~~~~~l~ 97 (156)
|..-....+|..|.. .+.++..+++.++. .-..+.+.++.+.|++.|++.. +..|++.+.|.
T Consensus 162 d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~------------~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~ 229 (268)
T 3ab8_A 162 DASESAVRALHALAPLARALGLGVRVVSVHEDP------------ARAEAWALEAEAYLRDHGVEASALVLGGDAADHLL 229 (268)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH------------HHHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH------------HHHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHH
Confidence 444445566766543 24568888887652 1123556777788888887644 56799999999
Q ss_pred HHHHHcCcCeEEEcc
Q psy6650 98 KLFKEWKTTCLTFEE 112 (156)
Q Consensus 98 ~l~~~~~~~~V~~~~ 112 (156)
+.+++. +-|++..
T Consensus 230 ~~a~~~--dliV~G~ 242 (268)
T 3ab8_A 230 RLQGPG--DLLALGA 242 (268)
T ss_dssp HHCCTT--EEEEEEC
T ss_pred HHHHhC--CEEEECC
Confidence 999886 6666655
No 95
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=63.30 E-value=16 Score=24.87 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChH---------------HHHHHHHHHcC--cCeEEE
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPA---------------DILPKLFKEWK--TTCLTF 110 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~---------------~~l~~l~~~~~--~~~V~~ 110 (156)
+.++.++=+.|++.|+.+.++.+.+. +.+..+.+..+ ++.++.
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 88 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFM 88 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEEE
Confidence 34555555667788999988887764 45566777777 888774
No 96
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=63.15 E-value=25 Score=24.76 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccCCchhHHHHHHHHHHHHhCCce
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~ 135 (156)
+.++=+.|++.|+++.++.+.+...+..+.+..++ +.++........ +-.-..+...++..|+.
T Consensus 115 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~~g~~ 182 (240)
T 3sd7_A 115 MKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGTR-VNKNEVIQYVLDLCNVK 182 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSCC-CCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHhhEEEEEeccccCCC-CCCHHHHHHHHHHcCCC
Confidence 45666778889999999988887778888887765 566665554321 11112344444444554
No 97
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=62.75 E-value=16 Score=25.45 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=32.5
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 74 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
+=+.|++.|+.+.++.|.+...+..++++.++..++....
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~k 100 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQS 100 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCS
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCC
Confidence 3445677899999999998888889999999988776543
No 98
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=61.67 E-value=44 Score=24.33 Aligned_cols=70 Identities=6% Similarity=0.078 Sum_probs=45.8
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCe----EEEcccC------------CchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTC----LTFEEDP------------EPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----V~~~~~~------------~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
++|++.|+.+.+..|.+...+..+.+..+... +++.... .+.......++.+.+++.++.+..+
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGai~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 111 (279)
T 3mpo_A 32 QAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAITFNGSVAQTISGKVLTNHSLTYEDYIDLEAWARKVRAHFQIE 111 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTCCSSSCEEEEGGGTEEEETTSCEEEECCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCCEEEEcCcEEEECCCCCEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 44567899999999999988888888876542 2211100 1223344566777777788888777
Q ss_pred cCCeee
Q psy6650 140 VSHTLY 145 (156)
Q Consensus 140 ~~~~L~ 145 (156)
.+...+
T Consensus 112 ~~~~~~ 117 (279)
T 3mpo_A 112 TPDYIY 117 (279)
T ss_dssp CSSCEE
T ss_pred ECCEEE
Confidence 665444
No 99
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=61.47 E-value=47 Score=24.58 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=45.0
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCe-EE-Ecc--------cC---CchhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTC-LT-FEE--------DP---EPFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~-V~-~~~--------~~---~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
++|++.|+.+.+..|.+...+..++++++.+. ++ .|- .. .+.......++.+.+++.|+.+..+.+.
T Consensus 31 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 110 (288)
T 1nrw_A 31 RQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTWVISANGAVIHDPEGRLYHHETIDKKRAYDILSWLESENYYYEVFTGS 110 (288)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHGGGTCCCEEEEGGGTEEECTTCCEEEECCCCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCeEEEcCCCcEEEEeeCCHHHHHHHHHHHHHCCcEEEEEeCC
Confidence 34567899999999999888888888876653 21 111 10 1122344556667777788888777555
Q ss_pred eee
Q psy6650 143 TLY 145 (156)
Q Consensus 143 ~L~ 145 (156)
..+
T Consensus 111 ~~~ 113 (288)
T 1nrw_A 111 AIY 113 (288)
T ss_dssp CEE
T ss_pred EEE
Confidence 444
No 100
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=61.17 E-value=35 Score=25.32 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=42.3
Q ss_pred HHHhCCCeEEEEEcChHHHHHHHHHHcCcCe-----EEEcccC------------CchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTC-----LTFEEDP------------EPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 77 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~-----V~~~~~~------------~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
+|++.|+.+.+..|.+...+..+.++.+.+. |..|-.+ .+......+++.+.+++.++.+..+
T Consensus 33 ~l~~~Gi~vviaTGR~~~~~~~~~~~l~l~~~~~~~I~~NGa~i~~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~ 112 (282)
T 1rkq_A 33 AARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHAL 112 (282)
T ss_dssp HHHHTTCEEEEECSSCGGGTHHHHHHTTCCSTTCEEEEGGGTEEEETTTCCEEEECCBCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCCCCeEEEeCCeEEEECCCCeEEEEecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3456799999999999888888888877642 2222111 1123344556667776667777666
Q ss_pred cCCe
Q psy6650 140 VSHT 143 (156)
Q Consensus 140 ~~~~ 143 (156)
.+..
T Consensus 113 ~~~~ 116 (282)
T 1rkq_A 113 DRTT 116 (282)
T ss_dssp CSSC
T ss_pred ECCE
Confidence 5443
No 101
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=60.84 E-value=51 Score=24.80 Aligned_cols=72 Identities=6% Similarity=0.083 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC--hHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ--PAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+.+.+++.|..+.+...+ +.. .+. .+...+++.|++....... ..+.+.+++.|++++.+
T Consensus 76 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~-~l~~~~vdgiIi~~~~~~~-----~~~~~~~~~~~iPvV~~ 149 (338)
T 3dbi_A 76 IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQ-YLLDLRCDAIMIYPRFLSV-----DEIDDIIDAHSQPIMVL 149 (338)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHH-HHHHTTCSEEEECCSSSCH-----HHHHHHHHHCSSCEEEE
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH-HHHhCCCCEEEEeCCCCCh-----HHHHHHHHcCCCCEEEE
Confidence 377888889999999999999988643 322 333 3344589999876432221 23445566678999888
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 150 ~~~ 152 (338)
T 3dbi_A 150 NRR 152 (338)
T ss_dssp SSC
T ss_pred cCC
Confidence 653
No 102
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=60.82 E-value=46 Score=25.36 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc-ChHHHHHHHHHHcCcCeEEEcccCCchhHHHH
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRG-QPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d 122 (156)
+.|.+|.+.+++.|++.++..- .+......|+++.++..++.+.-..-|..-..
T Consensus 224 ~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~l~~~Y~~~m~ 278 (291)
T 1pq4_A 224 QELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLDPLAADWSSNLK 278 (291)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEECTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEcCchhhHHHHHH
Confidence 4467777788888999887763 33456677788888888777644333443333
No 103
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=60.81 E-value=43 Score=24.00 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC--hH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ--PA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+...+ +. +.+..+ ...+++.|++........ . ..+.+.+.|++++.+
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~----~-~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 15 PSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLF-RARRCDALFVASCLPPED----D-SYRELQDKGLPVIAI 88 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEECCCCCSSC----C-HHHHHHHTTCCEEEE
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH-HHcCCCEEEEecCccccH----H-HHHHHHHcCCCEEEE
Confidence 477888888999999999999988743 32 233333 345899887754321111 1 123445579999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 89 ~~~ 91 (272)
T 3o74_A 89 DRR 91 (272)
T ss_dssp SSC
T ss_pred ccC
Confidence 654
No 104
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=60.69 E-value=34 Score=26.10 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=44.7
Q ss_pred EEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHcCcCeE
Q psy6650 45 CVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEWKTTCL 108 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V 108 (156)
.+|+.|.... ++|......+.+-+.+.-+.|.+.|..++++.+++.. .+..+.+.+++-.|
T Consensus 50 ~iy~~D~~~~---Pyg~~s~~~i~~~~~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVi 112 (286)
T 2jfq_A 50 IYYLGDIGRC---PYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVI 112 (286)
T ss_dssp EEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEE
T ss_pred EEEeccCCCC---CcCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEE
Confidence 5788886433 4666666777888888888888999999999988876 56666666654433
No 105
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=60.59 E-value=50 Score=24.62 Aligned_cols=119 Identities=11% Similarity=0.016 Sum_probs=67.6
Q ss_pred CCCccccHHHHHHHh----cCCcceEEEEeCCCCcCCC-CCCc-chHH-------HHHHHHHHHHHHHHhCCCeE--EEE
Q psy6650 24 GLRMHDNPSLREGLK----GCTTFRCVFILDPWFAGSS-NVGI-NKWR-------FLLQCLEDLDINLRKLNSRL--FVI 88 (156)
Q Consensus 24 DLRl~DN~aL~~A~~----~~~~vi~vfi~d~~~~~~~-~~~~-~r~~-------Fl~~sL~~L~~~L~~~g~~L--~v~ 88 (156)
|.--....+|..|+. .+.+|..+++.++...... ..+. .... -..+.|.++.+.++..|++. .+.
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~ 94 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQIDIKVI 94 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 555566678877764 3568988998765221110 1111 1111 12345566666666677764 445
Q ss_pred -EcChHHHHHHHHHHcCcCeEEEcccCCch-hHH-HHHHHHHHHHhCCceEEEecCC
Q psy6650 89 -RGQPADILPKLFKEWKTTCLTFEEDPEPF-GKV-RDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 89 -~g~~~~~l~~l~~~~~~~~V~~~~~~~~~-~~~-~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
.|++.+.|.+.+++.+++-|++....... ... .-....+.+...++++..+...
T Consensus 95 ~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 95 WHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp ECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred ecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 79999999999999999999886543211 000 0011223444457777766543
No 106
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=60.51 E-value=37 Score=23.08 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=30.7
Q ss_pred HHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 96 LPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 96 l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
+.+++++..++-|+...+.......-...+++.+-+.||++.+
T Consensus 88 i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 88 IRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp HHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 5667777888888776665444455567788888778888764
No 107
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=60.50 E-value=23 Score=21.79 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=25.9
Q ss_pred HHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 98 KLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 98 ~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
+.+++-.+.-|+...+..+ .....+...|++.||++..+.+
T Consensus 21 kai~~gkaklViiA~D~~~---~~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 21 KALKRGSVKEVVVAKDADP---ILTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHTTTCEEEEEEETTSCH---HHHHHHHHHHHHHTCCEEEESC
T ss_pred HHHHcCCeeEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEECC
Confidence 4455556667777777666 2344566667767777776654
No 108
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=60.38 E-value=22 Score=24.62 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccCCchhHHHHHHHHHHHHhCCce---EEEecCC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDPEPFGKVRDQNIMTLCRELNIE---VIARVSH 142 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~---~~~~~~~ 142 (156)
.+.++-+.|++.|..+.++.+.+...+..+.+..++ +.++........ +-.-..+...++..|+. +..+.|.
T Consensus 90 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~lgi~~~~~i~iGD~ 168 (226)
T 3mc1_A 90 GIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLDGKL-STKEDVIRYAMESLNIKSDDAIMIGDR 168 (226)
T ss_dssp THHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSSS-CSHHHHHHHHHHHHTCCGGGEEEEESS
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhheeeeeccCCCCCC-CCCHHHHHHHHHHhCcCcccEEEECCC
Confidence 445566677788999999988877777778877664 456665554321 11123344445444543 4445443
No 109
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=60.18 E-value=32 Score=24.18 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEccc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEED 113 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~ 113 (156)
.+.++=+.|++.|+++.++.+.+...+..+++..++ +.|+...+
T Consensus 87 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~f~~i~~~~~ 134 (222)
T 2nyv_A 87 EIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDT 134 (222)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECTTS
T ss_pred CHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCHHHheEEEecCc
Confidence 344555667788999999988887777788887764 45666544
No 110
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=60.13 E-value=28 Score=25.22 Aligned_cols=70 Identities=6% Similarity=0.085 Sum_probs=43.8
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccC-----------CchhHHHHHHHHHHHHhCCceEEEecCCee
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP-----------EPFGKVRDQNIMTLCRELNIEVIARVSHTL 144 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~-----------~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L 144 (156)
++|++.|+.+.+..|.+...+..+.++.+.+.+++.... .+.......++.+.+++.++.+..+....+
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~ 111 (274)
T 3fzq_A 32 RLCQKNHCSVVICTGRSMGTIQDDVLSLGVDGYIAGGGNYIQYHGELLYNQSFNQRLIKEVVCLLKKREVAFSIESQEKV 111 (274)
T ss_dssp HHHHHTTCEEEEECSSCTTTSCHHHHTTCCSEEEETTTTEEEETTEEEEECCCCHHHHHHHHHHHHHHTCEEEEECSSCE
T ss_pred HHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEEEecCccEEEECCEEEEEcCCCHHHHHHHHHHHHHCCceEEEEeCCce
Confidence 344677999999999988777777777776543321100 111234445666777777888776655544
Q ss_pred e
Q psy6650 145 Y 145 (156)
Q Consensus 145 ~ 145 (156)
+
T Consensus 112 ~ 112 (274)
T 3fzq_A 112 F 112 (274)
T ss_dssp E
T ss_pred E
Confidence 3
No 111
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=60.00 E-value=35 Score=24.78 Aligned_cols=66 Identities=3% Similarity=-0.092 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc---ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRG---QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g---~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
+.+.++++.+++.|+.+..... ...+ ...+++++.|+..|.+.. +. +..+++.+.+++.||++...
T Consensus 61 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p--~~---~~l~~l~~~a~~~gv~l~lE 132 (257)
T 3lmz_A 61 EQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVP--NY---ELLPYVDKKVKEYDFHYAIH 132 (257)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEE--CG---GGHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecC--CH---HHHHHHHHHHHHcCCEEEEe
Confidence 5678899999999998776542 2233 334577789999998753 22 33456667777779886543
No 112
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=59.86 E-value=46 Score=24.03 Aligned_cols=75 Identities=15% Similarity=0.023 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH----cCcCeEEE-cccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKE----WKTTCLTF-EEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 64 ~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~----~~~~~V~~-~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
..+|.++...+...+ ..|..++|--.........+++. -+|..|++ ..+|....... ..-.+.|++.||++..
T Consensus 67 ~~Ai~~a~~~l~~~~-~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~-~~g~~~L~~aGI~V~~ 144 (190)
T 2nyt_A 67 EAFFNTILPAFDPAL-RYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEI-QAALKKLKEAGCKLRI 144 (190)
T ss_pred HHHHHHHHHhcCccc-cCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHH-HHHHHHHHHCCCEEEE
Confidence 445554433232222 23888887766554555444443 28998876 56664322221 2344567888999986
Q ss_pred ec
Q psy6650 139 RV 140 (156)
Q Consensus 139 ~~ 140 (156)
..
T Consensus 145 ~~ 146 (190)
T 2nyt_A 145 MK 146 (190)
T ss_pred ec
Confidence 54
No 113
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=59.67 E-value=51 Score=24.41 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
|+.+-+..+++.+++.|..+.+... ++. +.+..+. ..+++.|++......... ...+.+.+.|++++.++
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~----~~~~~~~~~~iPvV~~~ 90 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMI-NRGVDVLVIIPYNGQVLS----NVVKEAKQEGIKVLAYD 90 (313)
T ss_dssp TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEEECSSTTSCH----HHHHHHHTTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChhhhH----HHHHHHHHCCCeEEEEC
Confidence 5566777788889999999998764 332 2344444 358898877643222111 12234455799999887
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 91 ~~ 92 (313)
T 3m9w_A 91 RM 92 (313)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 114
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=59.44 E-value=18 Score=24.98 Aligned_cols=45 Identities=7% Similarity=-0.064 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
-+..|.++.+++++.|..++.+..++.+.+.+++++++++-.+..
T Consensus 70 el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~ 114 (179)
T 3ixr_A 70 EGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVS 114 (179)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEE
Confidence 357888999999999999998888888899999999887644433
No 115
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=59.31 E-value=34 Score=25.84 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=45.0
Q ss_pred EEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHh-CCCeEEEEEcChHH--HHHHHHHHcCcCeE
Q psy6650 45 CVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRK-LNSRLFVIRGQPAD--ILPKLFKEWKTTCL 108 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~-~g~~L~v~~g~~~~--~l~~l~~~~~~~~V 108 (156)
.+|+-|.... ++|.+....+.+-+.+.-+.|.+ .|..++|+.+++.. .+..+-+.+++-.|
T Consensus 31 ~iy~~D~~~~---PyG~~s~~~i~~~~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVi 94 (272)
T 1zuw_A 31 IIYVGDTKRC---PYGPRPEEEVLQYTWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVV 94 (272)
T ss_dssp EEEEECGGGC---CCSSSCHHHHHHHHHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEE
T ss_pred EEEeccCCCC---CCCCCCHHHHHHHHHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEE
Confidence 5688886433 46767677777777777788888 99999999988877 57777666655444
No 116
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=58.59 E-value=52 Score=25.11 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeE-EEcccC
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL-TFEEDP 114 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V-~~~~~~ 114 (156)
.+.|.+.-+.|++.||+.-++.....+.+ +.+.+.|++.| +.+..|
T Consensus 110 ~~~L~~~i~~L~~~GIrVSLFIDpd~~qi-~aA~~~GAd~IELhTG~Y 156 (260)
T 3o6c_A 110 HAKLKQSIEKLQNANIEVSLFINPSLEDI-EKSKILKAQFIELHTGHY 156 (260)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEECSCHHHH-HHHHHTTCSEEEECCHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHhCCCEEEEechHh
Confidence 35566666778889999888886555555 47888999988 433333
No 117
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=58.20 E-value=28 Score=23.95 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT 105 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 105 (156)
.+.++-+.|++.|+++.++.+.+...+..+.+..++
T Consensus 74 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l 109 (205)
T 3m9l_A 74 GAVELVRELAGRGYRLGILTRNARELAHVTLEAIGL 109 (205)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCc
Confidence 355666778888999999998888888888888776
No 118
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=58.16 E-value=52 Score=24.09 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC-hHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ-PAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~-~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+-+..+++.++++|..+.+.... +.. .+..+++ .+++.|++.... .... ....+.+.+.|++++.++
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~-~~~~---~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 15 PWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA-SGAKGFVICTPD-PKLG---SAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH-TTCCEEEEECSC-GGGH---HHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCC-chhh---HHHHHHHHHCCCcEEEeC
Confidence 478888888999999999998877653 322 3444444 478988776432 2111 122234556799999987
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 90 ~~ 91 (306)
T 8abp_A 90 DQ 91 (306)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 119
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=57.57 E-value=10 Score=32.56 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccC
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~ 114 (156)
+.-+.|++.|+.+.++.|++......++++.+++.++..-.+
T Consensus 464 ~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~P 505 (645)
T 3j08_A 464 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLP 505 (645)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCT
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeCCH
Confidence 344556778999999999999999999999999999887654
No 120
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=57.26 E-value=55 Score=24.07 Aligned_cols=71 Identities=10% Similarity=0.008 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc--------C------------h---------HHHHHHHHHHcCcCeEEEcccCCch-
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRG--------Q------------P---------ADILPKLFKEWKTTCLTFEEDPEPF- 117 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g--------~------------~---------~~~l~~l~~~~~~~~V~~~~~~~~~- 117 (156)
-+.+.++++.|++.|+.+..... + + .....+++++.++..|.+...+.+.
T Consensus 50 ~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~ 129 (290)
T 3tva_A 50 REHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPES 129 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCccc
Confidence 35688999999999999887642 1 1 1233456778899999875433221
Q ss_pred -h------HHHHHHHHHHHHhCCceEEE
Q psy6650 118 -G------KVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 118 -~------~~~d~~v~~~l~~~~i~~~~ 138 (156)
+ .+..+++.+.+++.||++..
T Consensus 130 ~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 157 (290)
T 3tva_A 130 SSPDYSELVRVTQDLLTHAANHGQAVHL 157 (290)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1 12223344445566887654
No 121
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=56.10 E-value=53 Score=23.79 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc------ChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRG------QPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g------~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
+.+.++++.|++.|+.+..... +......+++++.++..|.+... .. ..+.+.+.+++.||++...
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--~~---~~~~l~~~a~~~gv~l~~E 134 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--LS---DWDLVEKLSKQYNIKISVH 134 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--GG---GHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--HH---HHHHHHHHHHHhCCEEEEE
Confidence 5678899999999999876642 12334556788899999988632 22 2356777777789876543
No 122
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=55.98 E-value=43 Score=24.86 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=45.0
Q ss_pred eEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHcCcCeE
Q psy6650 44 RCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEWKTTCL 108 (156)
Q Consensus 44 i~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V 108 (156)
..+|+-|.... ++|......+.+.+.+.-+.|.+.|...+++.+++.. .+..+.+..++-.|
T Consensus 27 ~~iy~~D~~~~---pyG~~s~~~i~~~~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvi 90 (254)
T 1b73_A 27 DIVYLGDTARV---PYGIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVF 90 (254)
T ss_dssp EEEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEE
T ss_pred cEEEeecCCCC---CCCcCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEE
Confidence 35788887543 4666666777787778888888999999999888775 46666666555433
No 123
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=55.74 E-value=56 Score=23.70 Aligned_cols=75 Identities=9% Similarity=0.074 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcC--hH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQ--PA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
|+.+-+..+++.+++.|..+.+...+ +. +.+..+. ..+++.|++........... ..+.+.+.+.|++++.++
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~-~~~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLL-SQHIDGLIVEPTKSALQTPN-IGYYLNLEKNGIPFAMIN 106 (298)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTCCSEEEECCSSTTSCCTT-HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH-HCCCCEEEEecccccccCCc-HHHHHHHHhcCCCEEEEe
Confidence 66777888889999999999988643 32 2344444 46899988754321100000 122234556799999887
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 107 ~~ 108 (298)
T 3tb6_A 107 AS 108 (298)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 124
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=55.64 E-value=25 Score=24.66 Aligned_cols=44 Identities=9% Similarity=-0.060 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
+.++-+.|++.|+.+.++.+.+...+..+.+..++ +.++.....
T Consensus 109 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 156 (237)
T 4ex6_A 109 VLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDDSV 156 (237)
T ss_dssp HHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGGGTCSEEECTTTS
T ss_pred HHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCchhheeeEEeCCCC
Confidence 44666778888999999998887777777777664 566666553
No 125
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=55.55 E-value=45 Score=22.56 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEE
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~ 109 (156)
.+.++-+.|++.|+.+.+..|.+......+.+..+++.++
T Consensus 80 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~~~~ 119 (211)
T 1l7m_A 80 GAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAF 119 (211)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCeEE
Confidence 4556666777889999999888776666777777776654
No 126
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=55.44 E-value=58 Score=23.77 Aligned_cols=70 Identities=7% Similarity=-0.072 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc--Ch---HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG--QP---ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~---~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
|+.+-+..+++.+++.|..+.+... ++ .+.+..+ ...+++.|++....... ..+ +.+.+.|++++.++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~-----~~~-~~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 22 ILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLI-RSGNVDGFVLSSINYND-----PRV-QFLLKQKFPFVAFG 94 (287)
T ss_dssp THHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHH-HTTCCSEEEECSCCTTC-----HHH-HHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHH-HcCCCCEEEEeecCCCc-----HHH-HHHHhcCCCEEEEC
Confidence 6677788888889999999887642 22 2344444 44589988775422111 122 33445689999886
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 95 ~~ 96 (287)
T 3bbl_A 95 RS 96 (287)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 127
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=55.36 E-value=55 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=13.1
Q ss_pred HHHHHHHcCcCeEEEcccCCc
Q psy6650 96 LPKLFKEWKTTCLTFEEDPEP 116 (156)
Q Consensus 96 l~~l~~~~~~~~V~~~~~~~~ 116 (156)
|.+++++.++..||++....+
T Consensus 220 l~~~ik~~~v~~if~e~~~~~ 240 (286)
T 3gi1_A 220 IQDFVKEYNVKTIFAEDNVNP 240 (286)
T ss_dssp HHHHHHHTTCCEEEECTTSCT
T ss_pred HHHHHHHcCCCEEEEeCCCCh
Confidence 445555667777777765544
No 128
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=55.31 E-value=35 Score=25.77 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=44.9
Q ss_pred EEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHcCcCeE
Q psy6650 45 CVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEWKTTCL 108 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V 108 (156)
.+|+-|.... ++|.+....+.+-+.+.-+.|.+.|..++|+.+++.. .+..+-+.+++-.|
T Consensus 35 ~iy~~D~~~~---PyG~~s~~~i~~~~~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVi 97 (276)
T 2dwu_A 35 ICYIGDNERC---PYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVI 97 (276)
T ss_dssp EEEEECGGGC---CCTTSCHHHHHHHHHHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEE
T ss_pred EEEccCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEE
Confidence 5788786433 4677767777777777778888999999999988775 57777666655433
No 129
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=55.19 E-value=67 Score=24.40 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+.+.+++.|..+.+... ++. +.+..+ ...+++.|++....... ...+.+.+.|++++.+
T Consensus 83 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdGiI~~~~~~~~------~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 83 LHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETM-LRRRPEAMVLSYDGHTE------QTIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTCCSEEEEECSCCCH------HHHHHHHHCCSCEEEE
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH-HhCCCCEEEEeCCCCCH------HHHHHHHhCCCCEEEE
Confidence 47788888999999999999988764 332 233333 34589988775332221 2234455679999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
++.
T Consensus 156 ~~~ 158 (355)
T 3e3m_A 156 WEK 158 (355)
T ss_dssp SSC
T ss_pred CCc
Confidence 543
No 130
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=54.92 E-value=66 Score=24.26 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++...... . ...+.+.+.|++++.++
T Consensus 82 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdGiIi~~~~~~-~-----~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 82 VFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEML-SWRPSGVIIAGLEHS-E-----AARAMLDAAGIPVVEIM 154 (344)
T ss_dssp SHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHH-TTCCSEEEEECSCCC-H-----HHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEECCCCC-H-----HHHHHHHhCCCCEEEEe
Confidence 6667788888999999999988764 3332 233333 458888877532211 1 22344566799999885
Q ss_pred C
Q psy6650 141 S 141 (156)
Q Consensus 141 ~ 141 (156)
+
T Consensus 155 ~ 155 (344)
T 3kjx_A 155 D 155 (344)
T ss_dssp E
T ss_pred C
Confidence 3
No 131
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=54.90 E-value=19 Score=23.10 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCcCeEEEccc------CCchhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 94 DILPKLFKEWKTTCLTFEED------PEPFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 94 ~~l~~l~~~~~~~~V~~~~~------~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
+.|.+++++++++.|++--. .++.. ++-++..+.|++.+++++.++.+
T Consensus 41 ~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~-~~~~~f~~~L~~~~lpV~~~DER 94 (98)
T 1iv0_A 41 EALLDFVRREGLGKLVVGLPLRTDLKESAQA-GKVLPLVEALRARGVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCCCSSSCCCS-STTHHHHHHHHHTTCEEEEECCS
T ss_pred HHHHHHHHHcCCCEEEEeeccCCCCCcCHHH-HHHHHHHHHHhcCCCCEEEECCC
Confidence 56777888888888876522 22222 12223333333337777766643
No 132
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=54.74 E-value=30 Score=26.38 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhC-----CCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 67 LLQCLEDLDINLRKL-----NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 67 l~~sL~~L~~~L~~~-----g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
+.+.|.+|++++++. +..+++.+ + .+.=|++.+|.+.+.....-.....++..++.+.+++.+|++..+
T Consensus 170 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H--~--af~Yf~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~ 243 (291)
T 1pq4_A 170 FLAELERLNQELGQILQPLPQRKFIVFH--P--SWAYFARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFG 243 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCEEEESS--C--CCHHHHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEC--C--chHHHHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344556665554422 33444322 1 233455555555443321111122233344445555555555444
No 133
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=54.56 E-value=19 Score=27.14 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
+..++-+.|++.|++++++.|.....+..++++.++.
T Consensus 145 g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~ 181 (297)
T 4fe3_A 145 GYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVY 181 (297)
T ss_dssp THHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCC
Confidence 4567778899999999999999999999999998764
No 134
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=53.88 E-value=32 Score=23.82 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
.+.++-+.|++.|..+.++.+.+.+.+..+.+..++ +.++.....
T Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 143 (233)
T 3s6j_A 95 GAVELLETLDKENLKWCIATSGGIDTATINLKALKLDINKINIVTRDDV 143 (233)
T ss_dssp THHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCCTTSSCEECGGGS
T ss_pred CHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchhhhhheeeccccC
Confidence 355666778888999999988887777888887665 456665554
No 135
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=53.33 E-value=27 Score=23.44 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
-....|.++.++++..|+.++.+.-+..+.+.++++++++.--+..
T Consensus 47 ~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 92 (161)
T 3drn_A 47 REASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVS 92 (161)
T ss_dssp HHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEE
Confidence 3567889999999999999888888888899999999888744433
No 136
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=52.51 E-value=41 Score=25.73 Aligned_cols=55 Identities=4% Similarity=0.016 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceE
Q psy6650 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136 (156)
Q Consensus 72 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~ 136 (156)
.++-+.+.+.|..+++..-+..+.+.++.+ .|++.|+++.. ..+++.+++.|+.|
T Consensus 258 ~~~v~~~~~~Gl~V~~WTVn~~~~~~~l~~-~GVDgIiTD~P---------~~~~~~l~~~g~~~ 312 (313)
T 3l12_A 258 PELVAEAHDLGLIVLTWTVNEPEDIRRMAT-TGVDGIVTDYP---------GRTQRILIDMGLSW 312 (313)
T ss_dssp HHHHHHHHHTTCEEEEBCCCSHHHHHHHHH-HTCSEEEESCH---------HHHHHHHHHTTCBC
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHH-cCCCEEEeCCH---------HHHHHHHHhcCcCc
Confidence 356667778899988877676777776664 69999999863 34556667777754
No 137
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=52.34 E-value=67 Score=24.43 Aligned_cols=63 Identities=16% Similarity=0.114 Sum_probs=45.9
Q ss_pred eEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHcCcCeEE
Q psy6650 44 RCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEWKTTCLT 109 (156)
Q Consensus 44 i~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V~ 109 (156)
..+|+-|.... ++|.+....+.+-+.+.-+.|.+.|..++|+.+++.. .+..+.+.+++-.|-
T Consensus 51 ~~iy~~D~~~~---pyG~~s~~~i~~~~~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 51 RLIYLGDTARC---PYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp CEEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred cEEEecccccC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 35787776433 4666767777787777778888999999999988875 477777776654443
No 138
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=52.22 E-value=49 Score=22.01 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=36.6
Q ss_pred eEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 84 RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 84 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
.+.|..|+..+++...++..++..|+......+.+ .+.+.+++.||++......
T Consensus 54 ~l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~~-----~i~~~A~~~~ipvl~t~~~ 107 (139)
T 2ioj_A 54 AALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQ-----LVLTKAEERGVPVILTGHD 107 (139)
T ss_dssp EEEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCH-----HHHHHHHHHTCCEEECSSC
T ss_pred EEEEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCCH-----HHHHHHHHCCCeEEEECCC
Confidence 57777799888776555425788888887777664 3334455668888776543
No 139
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=51.90 E-value=70 Score=23.70 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
|+.+-+..+++.++++|..+.+... ++. +.+..+++ .+++.|++........ .. ..+.+.+.|++++.++
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~~~~~~---~~-~~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 17 RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT-KGVKVLVIASIDGTTL---SD-VLKQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCSSGGGG---HH-HHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcCCchhH---HH-HHHHHHHCCCCEEEEC
Confidence 7778888899999999999988763 333 24555555 4799988764321111 11 2234556799999887
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
..
T Consensus 92 ~~ 93 (330)
T 3uug_A 92 RL 93 (330)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 140
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=51.90 E-value=45 Score=22.87 Aligned_cols=39 Identities=8% Similarity=-0.029 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCh-HHHHHHHHHHcCcCe
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQP-ADILPKLFKEWKTTC 107 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~-~~~l~~l~~~~~~~~ 107 (156)
..+.++=+.|++.|+++.++.|.+ ...+..+.+..++..
T Consensus 71 ~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~ 110 (187)
T 2wm8_A 71 PEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFR 110 (187)
T ss_dssp TTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTT
T ss_pred hhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHh
Confidence 444555556677799999999988 677888888888764
No 141
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=51.70 E-value=64 Score=23.15 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++...... . ..+ +.+.+.|++++.+
T Consensus 16 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~-~----~~~-~~l~~~~iPvV~~ 88 (275)
T 3d8u_A 16 KACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFL-ESRPAGVVLFGSEHS-Q----RTH-QLLEASNTPVLEI 88 (275)
T ss_dssp HHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHH-TSCCCCEEEESSCCC-H----HHH-HHHHHHTCCEEEE
T ss_pred ccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCC-H----HHH-HHHHhCCCCEEEE
Confidence 47778888999999999999887753 3322 344443 457888766532211 1 122 3344468999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 89 ~~~ 91 (275)
T 3d8u_A 89 AEL 91 (275)
T ss_dssp SSS
T ss_pred eec
Confidence 653
No 142
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=51.31 E-value=71 Score=23.59 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCCeEEEEE--cChHHHHHHHHHHc--CcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 70 CLEDLDINLRKLNSRLFVIR--GQPADILPKLFKEW--KTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~--g~~~~~l~~l~~~~--~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
++.-|+..++..|-.+.|.. |....++..++.+. ++..|+++..+.+. +..+.+.+.+++.|++++.+..
T Consensus 33 ~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~--et~~~~~~~~~~~gi~~~v~~~ 106 (252)
T 2o8v_A 33 AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFP--ETYRFIDELTDKLKLNLKVYRA 106 (252)
T ss_dssp HHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCH--HHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCH--HHHHHHHHHHHHhCCceEEEcC
Confidence 34456666666675655543 55556777777765 56667777666543 2345566677778999887754
No 143
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=51.26 E-value=71 Score=23.53 Aligned_cols=71 Identities=8% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcC--hHH--HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQ--PAD--ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
|+.+-+..+++.+++.|..+.+...+ +.. .+.+.+...+++.|++.......+ +.+ +.+.+ |++++.++.
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~-~~l~~-~iPvV~i~~ 102 (303)
T 3kke_A 29 VFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD----DML-AAVLE-GVPAVTINS 102 (303)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH----HHH-HHHHT-TSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH----HHH-HHHhC-CCCEEEECC
Confidence 66777888889999999999887643 221 233344456899887754322221 123 34455 999998865
Q ss_pred C
Q psy6650 142 H 142 (156)
Q Consensus 142 ~ 142 (156)
.
T Consensus 103 ~ 103 (303)
T 3kke_A 103 R 103 (303)
T ss_dssp C
T ss_pred c
Confidence 4
No 144
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=51.09 E-value=27 Score=30.35 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccC
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~ 114 (156)
+.-+.|++.|+.+.++.|+.......++++.+++.++.+-.+
T Consensus 542 ~~i~~l~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~P 583 (723)
T 3j09_A 542 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLP 583 (723)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCT
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCcEEEccCCH
Confidence 334456678999999999999999999999999999887654
No 145
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=51.07 E-value=34 Score=24.65 Aligned_cols=32 Identities=9% Similarity=-0.034 Sum_probs=26.6
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCe
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTC 107 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 107 (156)
++|++.|+.+.+..|++...+..++++.+++.
T Consensus 32 ~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~~ 63 (227)
T 1l6r_A 32 RSAEKKGLTVSLLSGNVIPVVYALKIFLGING 63 (227)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHHTCCS
T ss_pred HHHHHCCCEEEEECCCCcHHHHHHHHHhCCCC
Confidence 34567799999999999998888998887764
No 146
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=51.01 E-value=68 Score=23.26 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEE-cccC------------CchhHHHHHHHHHHHHhCCceEEE
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTF-EEDP------------EPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~-~~~~------------~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
++|.+.|+.+.+..|.+...+..+.++.+. .-+++ |-.+ .+.......++.+.+++.++.+..
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~ 111 (279)
T 4dw8_A 32 IRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKEMMYENVLPNEVVPVLYECARTNHLSILT 111 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGGGTEEEETTTCCEEEECCCCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCEEEEEcCCChHHHHHHHHHhCCCCCCCEEEEeCCeEEEECCCCeEEEEecCCHHHHHHHHHHHHHcCCEEEE
Confidence 344567999999999999888888888775 22221 1110 111222345566777778888888
Q ss_pred ecCCeeec
Q psy6650 139 RVSHTLYD 146 (156)
Q Consensus 139 ~~~~~L~~ 146 (156)
+.+..++.
T Consensus 112 ~~~~~~~~ 119 (279)
T 4dw8_A 112 YDGAEIVT 119 (279)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 77665554
No 147
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=50.85 E-value=54 Score=22.43 Aligned_cols=40 Identities=5% Similarity=-0.069 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCC-eEEEEEcChHHHHHHHHHHcCcC
Q psy6650 67 LLQCLEDLDINLRKLNS-RLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
-...|.++.+++++.|+ .++.+.-+..+.+.+++++.+++
T Consensus 51 e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~ 91 (167)
T 2wfc_A 51 HLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGAD 91 (167)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 34667788888889999 99988888888889999998876
No 148
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=50.51 E-value=57 Score=24.51 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=44.3
Q ss_pred EEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH--HHHHHHHHcCcCeE
Q psy6650 45 CVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD--ILPKLFKEWKTTCL 108 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~V 108 (156)
.+|+-|.... ++|.+....+.+.+.+.-+.|.+.|...+++.+++.. .+..+.+.+++-.|
T Consensus 40 ~iy~~D~~~~---Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvi 102 (273)
T 2oho_A 40 IVYIGDSARA---PYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVL 102 (273)
T ss_dssp EEEEECGGGC---CCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEE
T ss_pred EEEEeCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEE
Confidence 5777776432 4566666778888888888888999999999888875 25677666655444
No 149
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=49.88 E-value=60 Score=22.31 Aligned_cols=45 Identities=7% Similarity=0.010 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
.+.++-+.|++.|.++.++.+.+.+.+..+.+..++ +.++...+.
T Consensus 100 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 148 (230)
T 3um9_A 100 DVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLISVDEV 148 (230)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCGGGCSEEEEGGGT
T ss_pred CHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCChhhcceeEehhhc
Confidence 345566677888999999998887777777777654 567776554
No 150
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=49.73 E-value=12 Score=27.70 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEE---cChHHHHHHHHHHcCcCeEEEcccCC---chhHHHHHHHHHHHHhCCceEEE
Q psy6650 69 QCLEDLDINLRKLNSRLFVIR---GQPADILPKLFKEWKTTCLTFEEDPE---PFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~---g~~~~~l~~l~~~~~~~~V~~~~~~~---~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
++|.-..+..+++||.=+|+. |++...+.+.++ + .-|.+...++ |.+...+.++++.|++.|+++.+
T Consensus 38 ~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~--~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 110 (206)
T 1t57_A 38 RVLELVGERADQLGIRNFVVASVSGETALRLSEMVE--G-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 110 (206)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCC--S-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHcc--C-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 566666777778899877764 555543333221 2 4455554444 44556677888889989998753
No 151
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=49.63 E-value=40 Score=25.50 Aligned_cols=66 Identities=6% Similarity=0.140 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
.|+.+-+..+++.+++.|..+.+...+..+ .+.+.+...+++.|++... + +.+.+.|++++.++.
T Consensus 77 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~-----------~-~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 77 EYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV-----------V-GSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC-----------T-TCCC-CCSCEEEECC
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch-----------H-HHHhhCCCCEEEECc
Confidence 488888889999999999999988654322 2223333458898887654 1 234456899988865
Q ss_pred C
Q psy6650 142 H 142 (156)
Q Consensus 142 ~ 142 (156)
.
T Consensus 145 ~ 145 (333)
T 3jvd_A 145 G 145 (333)
T ss_dssp -
T ss_pred c
Confidence 4
No 152
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=49.61 E-value=74 Score=23.32 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc---------ChH------H---HHHHHHHHcCcCeEEEcccCCc-------hh-----
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRG---------QPA------D---ILPKLFKEWKTTCLTFEEDPEP-------FG----- 118 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g---------~~~------~---~l~~l~~~~~~~~V~~~~~~~~-------~~----- 118 (156)
+.+.++++.|++.|+.+..+.. ++. + ...+++++.++..|.+...+.. .+
T Consensus 64 ~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~ 143 (287)
T 3kws_A 64 GRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDF 143 (287)
T ss_dssp GGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHH
Confidence 4578899999999999865432 121 1 2345677889999877533211 11
Q ss_pred -HHHHHHHHHHHHhCCceEEEe
Q psy6650 119 -KVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 119 -~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.+..+++.+.+++.||++...
T Consensus 144 ~~~~l~~l~~~a~~~Gv~l~lE 165 (287)
T 3kws_A 144 LCEQFNEMGTFAAQHGTSVIFE 165 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEE
Confidence 122333444556678876544
No 153
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=49.55 E-value=32 Score=22.58 Aligned_cols=12 Identities=0% Similarity=0.160 Sum_probs=6.3
Q ss_pred HHHHHHHHHcCc
Q psy6650 94 DILPKLFKEWKT 105 (156)
Q Consensus 94 ~~l~~l~~~~~~ 105 (156)
....++.++.++
T Consensus 39 ~~ak~lL~~~gv 50 (118)
T 2wem_A 39 NAVVQILRLHGV 50 (118)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 344555555555
No 154
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=49.42 E-value=74 Score=23.23 Aligned_cols=71 Identities=6% Similarity=0.077 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++. +.+..+. ..+++.|++....... ..+ +.+.+.|++++.+
T Consensus 29 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~-----~~~-~~l~~~~iPvV~~ 101 (289)
T 2fep_A 29 IFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTML-GKQVDGIVFMGGNITD-----EHV-AEFKRSPVPIVLA 101 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSCCCH-----HHH-HHHHHSSSCEEEE
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCCCH-----HHH-HHHHhcCCCEEEE
Confidence 47778888899999999999888753 332 2344444 4689988875432221 122 2344579999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 102 ~~~ 104 (289)
T 2fep_A 102 ASV 104 (289)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 155
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=48.75 E-value=75 Score=23.08 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++. +.+..++ ..+++.|++.... .... ...+ +.+.+.|++++.+
T Consensus 14 ~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~-~~~~--~~~~-~~~~~~~iPvV~~ 88 (283)
T 2ioy_A 14 PFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLI-QQKVDVLLINPVD-SDAV--VTAI-KEANSKNIPVITI 88 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSS-TTTT--HHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCCc-hhhh--HHHH-HHHHHCCCeEEEe
Confidence 47778888889999999999888753 333 2355555 4589998775322 1110 1122 3345579999888
Q ss_pred cC
Q psy6650 140 VS 141 (156)
Q Consensus 140 ~~ 141 (156)
+.
T Consensus 89 ~~ 90 (283)
T 2ioy_A 89 DR 90 (283)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 156
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=48.71 E-value=50 Score=23.54 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEccc
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEED 113 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~ 113 (156)
+.++=+.|++.|+.+.++.+.+...+..+++..++ +.++...+
T Consensus 119 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~~~f~~~~~~~~ 165 (243)
T 2hsz_A 119 VKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDHLFSEMLGGQS 165 (243)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECTTT
T ss_pred HHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCchheEEEEEeccc
Confidence 45555668888999999988887777788887764 45555443
No 157
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=48.48 E-value=32 Score=23.26 Aligned_cols=45 Identities=7% Similarity=0.097 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
.+.++-+.|++.|..+.++.+.+...+..+.+..++ +.++...+.
T Consensus 88 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~f~~~~~~~~~ 136 (216)
T 2pib_A 88 GVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQV 136 (216)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGS
T ss_pred CHHHHHHHHHHCCCCEEEEeCCcHHhHHHHHHhcChHHhcCEEeecccC
Confidence 345666778889999999998888888888887764 456665543
No 158
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=47.93 E-value=72 Score=24.58 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=11.2
Q ss_pred HHHHHHHcCcCeEEEcccCCc
Q psy6650 96 LPKLFKEWKTTCLTFEEDPEP 116 (156)
Q Consensus 96 l~~l~~~~~~~~V~~~~~~~~ 116 (156)
|.+++++.++..||++....+
T Consensus 238 l~~~ik~~~v~~If~e~~~~~ 258 (313)
T 1toa_A 238 LAAFIAQRKLPAIFIESSIPH 258 (313)
T ss_dssp HHHHHHHTTCSEEEEETTSCT
T ss_pred HHHHHHHcCCCEEEEeCCCCh
Confidence 334445556666666655443
No 159
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=47.90 E-value=64 Score=22.57 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
.+.++=+.|++.|..+.++.+.+...+..+.+..++ +.++...+.
T Consensus 109 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 157 (240)
T 2no4_A 109 DAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDL 157 (240)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGT
T ss_pred CHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcHHHcCEEEEcccc
Confidence 445566678888999999998888878888887764 566766554
No 160
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=47.28 E-value=80 Score=23.01 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---H---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---D---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~ 136 (156)
.|+.+-+..+++.+++.|..+.+... ++. + .+..+. ..+++.|++...... . ..+ +.+.+.|+++
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~-~----~~~-~~l~~~~iPv 93 (290)
T 2rgy_A 21 SYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLI-GRDCDGVVVISHDLH-D----EDL-DELHRMHPKM 93 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHH-HTTCSEEEECCSSSC-H----HHH-HHHHHHCSSE
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHH-hcCccEEEEecCCCC-H----HHH-HHHhhcCCCE
Confidence 47778888899999999999887653 222 2 344443 458998877543222 1 122 2334468999
Q ss_pred EEecCC
Q psy6650 137 IARVSH 142 (156)
Q Consensus 137 ~~~~~~ 142 (156)
+.++..
T Consensus 94 V~~~~~ 99 (290)
T 2rgy_A 94 VFLNRA 99 (290)
T ss_dssp EEESSC
T ss_pred EEEccc
Confidence 888653
No 161
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=47.24 E-value=72 Score=23.23 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEE-E--cChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVI-R--GQPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~-~--g~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
|+.+-+..+++.+++.|..+.+. . +++. +.+..+. ..+++.|++...... . ..+ +.+.+.|++++.+
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~-~----~~~-~~l~~~~iPvV~~ 94 (290)
T 3clk_A 22 FAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAI-ERPVMGILLLSIALT-D----DNL-QLLQSSDVPYCFL 94 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHH-SSCCSEEEEESCC---------CH-HHHHCC--CEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEecccCC-H----HHH-HHHHhCCCCEEEE
Confidence 67788888899999999998887 4 2332 2345444 457888876532211 1 122 3445568999888
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 95 ~~~ 97 (290)
T 3clk_A 95 SMG 97 (290)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 162
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=47.22 E-value=68 Score=22.15 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcc
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEE 112 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~ 112 (156)
+.++=+.|++ |+++.++.+.+...+....+..++ +.|+...
T Consensus 89 ~~~~l~~L~~-~~~l~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~ 133 (210)
T 2ah5_A 89 IIDLLEELSS-SYPLYITTTKDTSTAQDMAKNLEIHHFFDGIYGSS 133 (210)
T ss_dssp HHHHHHHHHT-TSCEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEEC
T ss_pred HHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhcCchhheeeeecCC
Confidence 4445566778 999988877666666666776665 4555544
No 163
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=47.10 E-value=38 Score=24.38 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
.+.++-+.|++.|+++.+..|.+......+++..++...+..
T Consensus 148 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~ 189 (280)
T 3skx_A 148 ESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAE 189 (280)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS
T ss_pred hHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCChhHhHh
Confidence 344555667788999999999999999999999999876654
No 164
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.85 E-value=13 Score=17.72 Aligned_cols=15 Identities=60% Similarity=0.738 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhC
Q psy6650 67 LLQCLEDLDINLRKL 81 (156)
Q Consensus 67 l~~sL~~L~~~L~~~ 81 (156)
++.-|.+|++.|+++
T Consensus 6 lykeledlqerlrkl 20 (27)
T 3twe_A 6 LYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777888777653
No 165
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=46.76 E-value=55 Score=25.52 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=45.1
Q ss_pred EEEEeCCCCcCCCCCCcc-hHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 45 CVFILDPWFAGSSNVGIN-KWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
.++++|++ .. -.++. -..|....++.+-+.+++.|++.+...+.....++.++ +.+++.+.++..
T Consensus 209 ~i~i~D~~--~~-~lsp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~G~~~~l~~l~-~~g~d~~~~d~~ 274 (359)
T 2inf_A 209 AIQIFDSW--VG-ALNQADYRTYIKPVMNRIFSELAKENVPLIMFGVGASHLAGDWH-DLPLDVVGLDWR 274 (359)
T ss_dssp EEEEECTT--GG-GSCHHHHHHHTHHHHHHHHHHHGGGCSCEEEECTTCGGGHHHHH-TSSCSEEECCTT
T ss_pred EEEEeCCc--cc-cCCHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHH-HhCCCEEEeCCC
Confidence 67888883 22 23432 24788889999988998888887666543366777665 589998877543
No 166
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=46.73 E-value=65 Score=21.88 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCcCeEEEccc-----CCchhHHHHHHHHHHHHh-CCceEEEecCC
Q psy6650 93 ADILPKLFKEWKTTCLTFEED-----PEPFGKVRDQNIMTLCRE-LNIEVIARVSH 142 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~-----~~~~~~~~d~~v~~~l~~-~~i~~~~~~~~ 142 (156)
.+.|.+++++++++.|++--. ......++-++..+.|++ .+++++.++.+
T Consensus 42 ~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 467778888888888876522 111122222333333332 36777766543
No 167
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=46.64 E-value=57 Score=22.87 Aligned_cols=39 Identities=5% Similarity=-0.091 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCe-EEEEEcChHHHHHHHHHHcCcC
Q psy6650 68 LQCLEDLDINLRKLNSR-LFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
...|.++.+++++.|+. ++.+..+..+...++++++++.
T Consensus 77 ~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~ 116 (184)
T 3uma_A 77 LPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGM 116 (184)
T ss_dssp HHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCC
Confidence 45788888899999999 8888888888889999999886
No 168
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=46.62 E-value=68 Score=21.99 Aligned_cols=47 Identities=4% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChH---HHHHHHHHHcCc----CeEEEccc
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPA---DILPKLFKEWKT----TCLTFEED 113 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~---~~l~~l~~~~~~----~~V~~~~~ 113 (156)
+..++.++=+.|++.|+++.|+.+.+. +.+..+.+..++ +.|+...+
T Consensus 35 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~ 88 (189)
T 3ib6_A 35 LRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNS 88 (189)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCT
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccc
Confidence 345566666777888999999987665 677778888776 46666654
No 169
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=46.48 E-value=86 Score=23.16 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
..++=+.|++.|+++.++.|.+...+..+++..++..++..-
T Consensus 168 ~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~i 209 (287)
T 3a1c_A 168 AKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEV 209 (287)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCceeeeec
Confidence 344445677889999999999988888899999998877544
No 170
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=46.44 E-value=69 Score=22.04 Aligned_cols=88 Identities=16% Similarity=0.036 Sum_probs=53.9
Q ss_pred cceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEE-------------cChHHHHHHHHHHcCcCeE
Q psy6650 42 TFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIR-------------GQPADILPKLFKEWKTTCL 108 (156)
Q Consensus 42 ~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~-------------g~~~~~l~~l~~~~~~~~V 108 (156)
-++|-|+++.-+.. ...+..+-+.=++-|..|++...+.++++.+.. |+....+.+++.++++ .|
T Consensus 32 iiIP~~Vl~EL~~~-a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a-~l 109 (142)
T 3i8o_A 32 IIIPEAVVSELEYQ-ANMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNS-IL 109 (142)
T ss_dssp EEEEHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTC-EE
T ss_pred EEehHHHHHHHHHH-HHccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCC-EE
Confidence 46666777652111 122334444556667777665566788888763 3455678899999876 34
Q ss_pred EEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 109 TFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 109 ~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
+++ + ..+.+.++..||++.....
T Consensus 110 vTn-D---------~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 110 LTS-D---------WIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp EES-C---------HHHHHHHHHTTCCEEECCC
T ss_pred EcC-C---------HHHHHHHHHcCCEEEEecc
Confidence 444 3 2455666668999876543
No 171
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=46.43 E-value=85 Score=23.65 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHh-----CCCeEEEEEcChHHHHHHHHHHcCcCeE
Q psy6650 67 LLQCLEDLDINLRK-----LNSRLFVIRGQPADILPKLFKEWKTTCL 108 (156)
Q Consensus 67 l~~sL~~L~~~L~~-----~g~~L~v~~g~~~~~l~~l~~~~~~~~V 108 (156)
+.+.|.+|++++++ .+..+++.+. .+.=|++.+|.+.+
T Consensus 157 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~----af~Yf~~~yGl~~~ 199 (284)
T 3cx3_A 157 FIKKAQELTKKFQPKFEKATQKTFVTQHT----AFSYLAKRFGLNQL 199 (284)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCEEEEES----CCHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECC----chHHHHHHcCCEEe
Confidence 44556666665443 2445555432 22334444555444
No 172
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=46.34 E-value=46 Score=22.08 Aligned_cols=45 Identities=9% Similarity=0.038 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
-.+..|.++.+++++.| .++.+..++.+.+.+++++++++--+..
T Consensus 53 ~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~ 97 (159)
T 2a4v_A 53 RQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLS 97 (159)
T ss_dssp HHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEE
Confidence 35678888899999889 8887887888888999999887644433
No 173
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=46.32 E-value=40 Score=23.46 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCeEE-EEEcChHHHHHHHHHHcCcC
Q psy6650 68 LQCLEDLDINLRKLNSRLF-VIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~-v~~g~~~~~l~~l~~~~~~~ 106 (156)
+..+.++.+++++.|+.++ ++..+..+...+++++.+.+
T Consensus 64 ~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~ 103 (173)
T 3mng_A 64 LPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAE 103 (173)
T ss_dssp HHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 3567788888999999998 48888888889999998875
No 174
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=46.31 E-value=91 Score=23.38 Aligned_cols=69 Identities=7% Similarity=0.135 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcC--hH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQ--PA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
|+.+-+..+++.+++.|..+.+...+ +. +.+..+ ...+++.|++....... ...+.+.+.|++++.++
T Consensus 76 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~ 148 (339)
T 3h5o_A 76 VFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAY-LQHRPDGVLITGLSHAE------PFERILSQHALPVVYMM 148 (339)
T ss_dssp TTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HTTCCSEEEEECSCCCT------THHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH-HcCCCCEEEEeCCCCCH------HHHHHHhcCCCCEEEEe
Confidence 56677788888999999999887643 32 223333 34588988765422221 12234556799999885
Q ss_pred C
Q psy6650 141 S 141 (156)
Q Consensus 141 ~ 141 (156)
.
T Consensus 149 ~ 149 (339)
T 3h5o_A 149 D 149 (339)
T ss_dssp S
T ss_pred e
Confidence 4
No 175
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=46.27 E-value=1e+02 Score=23.97 Aligned_cols=120 Identities=5% Similarity=-0.004 Sum_probs=64.1
Q ss_pred eEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcC----
Q psy6650 16 HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQ---- 91 (156)
Q Consensus 16 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~---- 91 (156)
....|.|. .| .+..|.+.+...+.+|+--.+.......+. .....++.+.+.-+..++.|..+.+-..+
T Consensus 91 ~i~~l~~~-~~-----~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~-s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~ 163 (337)
T 3ble_A 91 EILGFVDG-NK-----TVDWIKDSGAKVLNLLTKGSLHHLEKQLGK-TPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNG 163 (337)
T ss_dssp EEEEESST-TH-----HHHHHHHHTCCEEEEEEECSHHHHHHHTCC-CHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred eEEEEccc-hh-----hHHHHHHCCCCEEEEEEecCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
Confidence 34566554 22 577777767677777764322111111121 13455677777777788899887655434
Q ss_pred ---hHHHHHHH---HHHcCcCeEEEcccCCchhHHHH----HHHHHHHHhCCceEEEecCC
Q psy6650 92 ---PADILPKL---FKEWKTTCLTFEEDPEPFGKVRD----QNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 92 ---~~~~l~~l---~~~~~~~~V~~~~~~~~~~~~~d----~~v~~~l~~~~i~~~~~~~~ 142 (156)
+.+.+.++ +.+.+++.|+..+..+.-..... +.+++.+....+.+|.+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~ 224 (337)
T 3ble_A 164 FRNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDY 224 (337)
T ss_dssp HHHCHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 12333333 34579999988776654333333 33333332223555555554
No 176
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=46.19 E-value=16 Score=23.34 Aligned_cols=48 Identities=8% Similarity=0.074 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcC----cCeEEEccc
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWK----TTCLTFEED 113 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~----~~~V~~~~~ 113 (156)
-+...+.++-+.|++.|+++.++.+.+...+..+.+..+ ++.|+...+
T Consensus 18 ~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~ 69 (137)
T 2pr7_A 18 EDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVVDKVLLSGE 69 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSSSEEEEHHH
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhccEEEEecc
Confidence 355777777788888999999998766555444444443 456776543
No 177
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=45.89 E-value=85 Score=22.91 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEE---cChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIR---GQPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
|+.+-+..+++.+++.|..+.+.. +++.. .+..+.+ .+++.|++......... ..+ +.+.+.|++++.+
T Consensus 18 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~---~~~-~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 18 YWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIA-KNPAGIAISAIDPVELT---DTI-NKAVDAGIPIVLF 92 (305)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHH-HCCSEEEECCSSTTTTH---HHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHH-hCCCEEEEcCCCHHHHH---HHH-HHHHHCCCcEEEE
Confidence 777888889999999999998842 34433 3444444 58998887543222111 122 3345579999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 93 ~~~ 95 (305)
T 3g1w_A 93 DSG 95 (305)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 178
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=45.53 E-value=66 Score=21.54 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCe-EEEEEcChHHHHHHHHHHcCc
Q psy6650 68 LQCLEDLDINLRKLNSR-LFVIRGQPADILPKLFKEWKT 105 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 105 (156)
...|.++.+++++.|+. ++.+.-+..+.+.++++++++
T Consensus 56 ~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~ 94 (162)
T 1tp9_A 56 VPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPE 94 (162)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCC
Confidence 46688888889889999 998888888889999999888
No 179
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=45.05 E-value=55 Score=23.68 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEE--c-----Ch---------HHHHHHHHHHcCcCeEEEcccCCc-----hh------HH
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIR--G-----QP---------ADILPKLFKEWKTTCLTFEEDPEP-----FG------KV 120 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~--g-----~~---------~~~l~~l~~~~~~~~V~~~~~~~~-----~~------~~ 120 (156)
-..+.++++.|++.|+.+.... + ++ .....++++..|+..|.+.....+ .+ .+
T Consensus 44 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~ 123 (275)
T 3qc0_A 44 AIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVE 123 (275)
T ss_dssp HHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHH
Confidence 4568899999999999876443 1 22 112345677789998876643222 11 12
Q ss_pred HHHHHHHHHHhCCceEEEe
Q psy6650 121 RDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 121 ~d~~v~~~l~~~~i~~~~~ 139 (156)
..+++.+.+++.||++...
T Consensus 124 ~l~~l~~~a~~~gv~l~lE 142 (275)
T 3qc0_A 124 GIAAVLPHARAAGVPLAIE 142 (275)
T ss_dssp HHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 2233444455668877644
No 180
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=44.83 E-value=72 Score=21.75 Aligned_cols=41 Identities=10% Similarity=-0.068 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEE
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 110 (156)
.+.++=+.|++.|.++.++.+.+...+..+.+..++...+.
T Consensus 79 ~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~ 119 (217)
T 3m1y_A 79 GALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFS 119 (217)
T ss_dssp THHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhcc
Confidence 45566677889999999999888888888888888876543
No 181
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=44.45 E-value=78 Score=23.83 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhC-----CCeEEEEE
Q psy6650 67 LLQCLEDLDINLRKL-----NSRLFVIR 89 (156)
Q Consensus 67 l~~sL~~L~~~L~~~-----g~~L~v~~ 89 (156)
+.+.|.+|++++++. +..+++.+
T Consensus 154 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H 181 (284)
T 2prs_A 154 FEAQLASTETQVGNELAPLKGKGYFVFH 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 344555665554422 44555543
No 182
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=44.39 E-value=1.1e+02 Score=23.73 Aligned_cols=74 Identities=4% Similarity=0.061 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc-ChHHHHHHHHHHc------CcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG-QPADILPKLFKEW------KTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~------~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
...+++.-|++-+++.+-.++.+.| ....+|..|+.+. ++..|+++..+.+. +..+-+.+.+++.|++++.
T Consensus 31 le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~--et~~~v~~~~~~~gi~l~v 108 (325)
T 1zun_A 31 LEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQ--EMYRFRDQMVEEMGLDLIT 108 (325)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCH--HHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCH--HHHHHHHHHHHHcCCCEEE
Confidence 4556888888888877644444444 4455666777664 57788888777654 3445666777778999887
Q ss_pred ecC
Q psy6650 139 RVS 141 (156)
Q Consensus 139 ~~~ 141 (156)
+.-
T Consensus 109 ~~~ 111 (325)
T 1zun_A 109 HIN 111 (325)
T ss_dssp ECC
T ss_pred EeC
Confidence 753
No 183
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=44.25 E-value=44 Score=23.68 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcC---cCeEEEccc
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWK---TTCLTFEED 113 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~---~~~V~~~~~ 113 (156)
+.++-+.|++.|+++.+..+.+.+.+..+.+..+ ++.|+...+
T Consensus 115 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~f~~~~~~~~ 160 (240)
T 2hi0_A 115 ILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFPGSFDFALGEKS 160 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHSTTTCSEEEEECT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCcceeEEEecCC
Confidence 4445556788899998888777666666666655 456666544
No 184
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=43.88 E-value=56 Score=24.80 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChH----HHHHHHHHHcCcC-----eEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPA----DILPKLFKEWKTT-----CLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~----~~l~~l~~~~~~~-----~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
++.++-+.|++.|+.+.++.|.+. +......++.++. .|++.... ++-.. .++.+.+.|..++.+-
T Consensus 105 G~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~~~~~~Lilr~~~-~~K~~----~r~~l~~~Gy~iv~~v 179 (262)
T 3ocu_A 105 GAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDK-SAKAA----RFAEIEKQGYEIVLYV 179 (262)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSCCSGGGEEEESSC-SCCHH----HHHHHHHTTEEEEEEE
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCcccccceeccCCC-CChHH----HHHHHHhcCCCEEEEE
Confidence 556777889999999999987654 4666667777876 57765332 22211 2233444566777776
Q ss_pred CCeeecCC
Q psy6650 141 SHTLYDLD 148 (156)
Q Consensus 141 ~~~L~~~~ 148 (156)
+..+.+..
T Consensus 180 GD~~~Dl~ 187 (262)
T 3ocu_A 180 GDNLDDFG 187 (262)
T ss_dssp ESSGGGGC
T ss_pred CCChHHhc
Confidence 66666544
No 185
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=43.77 E-value=36 Score=24.86 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhCCCe-EEEEEc--ChHH--HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSR-LFVIRG--QPAD--ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~-L~v~~g--~~~~--~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|.. +.+... ++.. .+.+.+...+++.|++... .+ +.+.+.|++++.+
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~----------~~-~~~~~~~iPvV~~ 91 (277)
T 3hs3_A 23 RFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAF----------TI-PPNFHLNTPLVMY 91 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECC----------CC-CTTCCCSSCEEEE
T ss_pred hhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcch----------HH-HHHHhCCCCEEEE
Confidence 48888889999999999999 877753 3322 2223344568998877641 11 2244568999888
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 92 ~~~ 94 (277)
T 3hs3_A 92 DSA 94 (277)
T ss_dssp SCC
T ss_pred ccc
Confidence 754
No 186
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=43.74 E-value=1e+02 Score=23.29 Aligned_cols=71 Identities=7% Similarity=0.078 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++...... . ..+ +.+.+.|++++.+
T Consensus 79 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~-~----~~~-~~l~~~~iPvV~i 151 (348)
T 3bil_A 79 HYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLT-SHGVDGIICVPNEEC-A----NQL-EDLQKQGMPVVLV 151 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHH-HTTCSCEEECCCGGG-H----HHH-HHHHHC-CCEEEE
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCC-h----HHH-HHHHhCCCCEEEE
Confidence 47778888899999999999988763 2322 333333 457888876532111 1 222 3445579999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 152 ~~~ 154 (348)
T 3bil_A 152 DRE 154 (348)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
No 187
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=43.68 E-value=89 Score=22.53 Aligned_cols=70 Identities=7% Similarity=0.070 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHh-CCceEEEe
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE-LNIEVIAR 139 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~-~~i~~~~~ 139 (156)
|+.+-+..+++.+++.|..+.+... ++. +.+..++ ..+++.|++...... . ..+ +.+.+ .|++++.+
T Consensus 35 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~-~----~~~-~~l~~~~~iPvV~~ 107 (296)
T 3brq_A 35 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLL-DLRCDAIMIYPRFLS-V----DEI-DDIIDAHSQPIMVL 107 (296)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHH-HTTCSEEEEECSSSC-H----HHH-HHHHHTCSSCEEEE
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEecCCCC-h----HHH-HHHHhcCCCCEEEE
Confidence 6667777788888999999888753 332 2344455 458888876533211 1 122 33455 69999888
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 108 ~~~ 110 (296)
T 3brq_A 108 NRR 110 (296)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 188
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=43.44 E-value=1.1e+02 Score=23.60 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q psy6650 67 LLQCLEDLDINLR 79 (156)
Q Consensus 67 l~~sL~~L~~~L~ 79 (156)
+.+.|.+|+++++
T Consensus 182 ~~~~L~~Ld~~~~ 194 (321)
T 1xvl_A 182 YSEQLKAIDRQLG 194 (321)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666554
No 189
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=49.43 E-value=5 Score=30.02 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
++....++=+.|++.|+++.++.|++......++++.+++.++..-
T Consensus 137 ~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~~ 182 (263)
T 2yj3_A 137 PRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNL 182 (263)
Confidence 3455566667788889999999999998888899998888776544
No 190
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=42.93 E-value=18 Score=28.31 Aligned_cols=43 Identities=9% Similarity=0.158 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH----cCc--CeEEE
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKE----WKT--TCLTF 110 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~----~~~--~~V~~ 110 (156)
+....+|-+.|++.|+..+|+.+.+.+++.-+++. ++| ++|+-
T Consensus 145 ~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~~~~ygIp~e~ViG 193 (327)
T 4as2_A 145 FSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIG 193 (327)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCGGGSCCCCGGGEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhcccccCCCHHHeEe
Confidence 45678899999999999999999999999988886 565 45543
No 191
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=42.89 E-value=30 Score=27.24 Aligned_cols=42 Identities=12% Similarity=-0.011 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEE
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~ 109 (156)
.+.+..+++-|+.+|++.++..|+..+++-.|+++..+..|+
T Consensus 134 ~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~ 175 (341)
T 3q8k_A 134 KQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAA 175 (341)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEE
Confidence 455677888899999999999998888888888874444333
No 192
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=42.69 E-value=31 Score=26.81 Aligned_cols=41 Identities=7% Similarity=-0.050 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEE
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 110 (156)
.+..+++-|+..|++.++..|+..+++-.|+++-.+..|+.
T Consensus 131 ~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S 171 (326)
T 1a76_A 131 MVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVS 171 (326)
T ss_dssp HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEEC
T ss_pred HHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEEec
Confidence 56677888889999999999998888888888733444443
No 193
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=42.26 E-value=29 Score=27.67 Aligned_cols=41 Identities=10% Similarity=-0.034 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEE
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 110 (156)
.+..+++-|+..|++.++..|+..+++-.|+....+..|+.
T Consensus 136 ~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS 176 (379)
T 1ul1_X 136 HNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176 (379)
T ss_dssp CHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEe
Confidence 35677888889999999999998889988888755554444
No 194
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=42.04 E-value=41 Score=23.76 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChH---------------HHHHHHHHHcCc--CeEEE
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPA---------------DILPKLFKEWKT--TCLTF 110 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~---------------~~l~~l~~~~~~--~~V~~ 110 (156)
....++=+.|++.|+.+.++.+.+. +.+..++++.++ +.++.
T Consensus 59 ~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 117 (218)
T 2o2x_A 59 PQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDMVLA 117 (218)
T ss_dssp GGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred cCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCceeeEEE
Confidence 4444555566778999999999887 677788888774 45543
No 195
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=41.87 E-value=74 Score=23.87 Aligned_cols=67 Identities=9% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCeEEEEE-cChHHHHHHHHHHc--CcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 73 DLDINLRKLNSRLFVIR-GQPADILPKLFKEW--KTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~--~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
-|+..++..|-.+.|.. |....+|..++.+. ++..|+++..+.+.+ ..+-+.+.+++.|++++.+..
T Consensus 45 ~l~~a~~~~g~~i~Va~SGkDS~vLL~Ll~~~~~~i~vv~iDtg~~~~e--t~~~v~~~~~~~gi~l~v~~~ 114 (275)
T 2goy_A 45 ILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPE--TYRFIDQVREHYGIAIDVLSP 114 (275)
T ss_dssp HHHHHHHHHSTTEEEECCSSTTHHHHHHHHHHCTTCCEEEECCSCCCHH--HHHHHHHHHHHHTCCCEEECC
T ss_pred HHHHHHHHcCCCEEEEeecHHHHHHHHHHHHhCCCceEEEEeCCCCCHH--HHHHHHHHHHHHCCeEEEEeC
Confidence 34444444444444432 77777888888774 567788887776543 234555666666888876643
No 196
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=41.51 E-value=90 Score=22.61 Aligned_cols=67 Identities=6% Similarity=-0.067 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCeEEEEE-----c------ChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 71 LEDLDINLRKLNSRLFVIR-----G------QPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~-----g------~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
+.++++.|++.|+.+.... + +......+++++.++..|.+........ ...+++.+.+++.||++..
T Consensus 53 ~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~-~~l~~l~~~a~~~Gv~l~l 130 (264)
T 1yx1_A 53 TEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLPEQ-PDLAALGRRLARHGLQLLV 130 (264)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECCCSS-CCHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHcCCEEEEecchhhcCCchhHHHHHHHHHHHHHHcCCCEEEEecCCCCcH-HHHHHHHHHHHhcCCEEEE
Confidence 4567777788887765321 1 2223344567778888776543221111 1334555566666776543
No 197
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=41.45 E-value=61 Score=22.27 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=14.5
Q ss_pred HHHHHcCcCeEEEcccCCchhHH
Q psy6650 98 KLFKEWKTTCLTFEEDPEPFGKV 120 (156)
Q Consensus 98 ~l~~~~~~~~V~~~~~~~~~~~~ 120 (156)
.|.++.++..+++++.+++.+.+
T Consensus 84 ~L~~~~~lpV~~vDEr~Ts~~Ak 106 (150)
T 1vhx_A 84 VLETTYNVPVVLWDERLTTMAAE 106 (150)
T ss_dssp HHHHHHCSCEEEECCSSCHHHHH
T ss_pred HHHHhhCCCEEEecCCCCHHHHH
Confidence 44445567777777777766443
No 198
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=41.43 E-value=82 Score=21.45 Aligned_cols=71 Identities=14% Similarity=0.033 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCC-eEEEEEcChHHHHHHHHHHcCcCeEEEcccCCch---hHHHHHHHHH--HHHhCCceEEEecC
Q psy6650 70 CLEDLDINLRKLNS-RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPF---GKVRDQNIMT--LCRELNIEVIARVS 141 (156)
Q Consensus 70 sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~---~~~~d~~v~~--~l~~~~i~~~~~~~ 141 (156)
.+...++.++..|. .+.+..|+..+.+..+. ....+.|+++..+... .....+.+.+ .|+..|+-+.....
T Consensus 79 ~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 79 SAAVIARNIEALGLSGATLRRGAVAAVVAAGT-TSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC-SSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred HHHHHHHHHHHcCCCceEEEEccHHHHHhhcc-CCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 44455556666565 58889999877654331 3468899998777653 2222333433 44444655554443
No 199
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=41.32 E-value=23 Score=28.24 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=51.9
Q ss_pred CCeEEEEecCCCCccccHHHHHHHhc-----CCcceEEEEeCCCCcC--CCCCCcchHHHHHHHHHHHHHHHHhCCCeEE
Q psy6650 14 EKHMVHWFRKGLRMHDNPSLREGLKG-----CTTFRCVFILDPWFAG--SSNVGINKWRFLLQCLEDLDINLRKLNSRLF 86 (156)
Q Consensus 14 ~~~~l~Wfr~DLRl~DN~aL~~A~~~-----~~~vi~vfi~d~~~~~--~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~ 86 (156)
+...|--.+|=-|+.-|+++...+++ .+-+.|+||.+..... ..-.|-.| |=...|...-+++.++|++-+
T Consensus 13 ~~~~v~~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r--~sid~l~~~~~~~~~lGi~av 90 (356)
T 3obk_A 13 GEVWLPIQARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSR--LSMEDLLKEVGEARSYGIKAF 90 (356)
T ss_dssp SCEECCCSCCGGGGGSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEECTTSTTCEE--ECHHHHHHHHHHHHHTTCCEE
T ss_pred CCEeeccCCCCCcCCCCHHHHHHHhhcCCCHHHceeeEEEecCCCCcccCCCCCceE--ECHHHHHHHHHHHHHCCCCEE
Confidence 44445556788889999999888864 2458899999864311 11234444 344677777788889999988
Q ss_pred EEEcC
Q psy6650 87 VIRGQ 91 (156)
Q Consensus 87 v~~g~ 91 (156)
++.|-
T Consensus 91 ~LFgv 95 (356)
T 3obk_A 91 MLFPK 95 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 77664
No 200
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=41.19 E-value=1e+02 Score=22.43 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++........ .+.+.+.+.|++++.+
T Consensus 33 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~~-----~~~~~~~~~~iPvV~~ 106 (293)
T 2iks_A 33 TSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLL-QRQVDAIIVSTSLPPEH-----PFYQRWANDPFPIVAL 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSCTTC-----HHHHTTTTSSSCEEEE
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCCCcH-----HHHHHHHhCCCCEEEE
Confidence 47778888899999999999988764 3322 344444 45789887754322111 1223344568999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 107 ~~~ 109 (293)
T 2iks_A 107 DRA 109 (293)
T ss_dssp ESC
T ss_pred CCc
Confidence 653
No 201
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=41.07 E-value=46 Score=21.32 Aligned_cols=49 Identities=4% Similarity=-0.031 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeee
Q psy6650 94 DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLY 145 (156)
Q Consensus 94 ~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~ 145 (156)
....++.++.++.-...+-.-.+.. .+.+.+......++...+++..+-
T Consensus 35 ~~ak~~L~~~gi~y~~~di~~d~~~---~~~l~~~~g~~tvP~ifi~g~~iG 83 (111)
T 3zyw_A 35 KQMVEILHKHNIQFSSFDIFSDEEV---RQGLKAYSSWPTYPQLYVSGELIG 83 (111)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCHHH---HHHHHHHHTCCSSCEEEETTEEEE
T ss_pred HHHHHHHHHcCCCeEEEECcCCHHH---HHHHHHHHCCCCCCEEEECCEEEe
Confidence 4566777777877555543322221 122333322345777777776543
No 202
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=41.02 E-value=1e+02 Score=22.38 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC----hH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ----PA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~ 137 (156)
.|+.+-+..+++.++++|..+.+...+ +. +.+..+++ .+++.|++......... ..+ +.+. .|++++
T Consensus 18 ~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~---~~~-~~~~-~~iPvV 91 (304)
T 3o1i_D 18 SYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQ-WGANAIILGTVDPHAYE---HNL-KSWV-GNTPVF 91 (304)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHH-HTCSEEEECCSSTTSST---TTH-HHHT-TTSCEE
T ss_pred cHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhHHH---HHH-HHHc-CCCCEE
Confidence 477788888899999999999988743 22 23444444 58998887633222001 112 3344 699999
Q ss_pred EecCC
Q psy6650 138 ARVSH 142 (156)
Q Consensus 138 ~~~~~ 142 (156)
.++..
T Consensus 92 ~~~~~ 96 (304)
T 3o1i_D 92 ATVNQ 96 (304)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 88643
No 203
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=41.00 E-value=39 Score=23.45 Aligned_cols=50 Identities=8% Similarity=0.075 Sum_probs=32.5
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHH--HcCcCeEEEcccCCchhHHHHHHHHHHHHhCCc
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFK--EWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~--~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i 134 (156)
+.|++.|+.+.|+.|+ .....+++ ..++. +|.... + .-..+...+++.|+
T Consensus 46 ~~Lk~~Gi~~~I~Tg~--~~~~~~l~~l~lgi~-~~~g~~--~----K~~~l~~~~~~~gi 97 (168)
T 3ewi_A 46 SLLKKSGIEVRLISER--ACSKQTLSALKLDCK-TEVSVS--D----KLATVDEWRKEMGL 97 (168)
T ss_dssp HHHHHTTCEEEEECSS--CCCHHHHHTTCCCCC-EECSCS--C----HHHHHHHHHHHTTC
T ss_pred HHHHHCCCEEEEEeCc--HHHHHHHHHhCCCcE-EEECCC--C----hHHHHHHHHHHcCc
Confidence 5667789999999999 55666777 67887 543321 1 12455566665564
No 204
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=40.91 E-value=37 Score=26.53 Aligned_cols=44 Identities=7% Similarity=-0.064 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
.+.+..+++-|+.+|++.++..++..+++-.|+++-.++.|+.+
T Consensus 129 ~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~ 172 (340)
T 1b43_A 129 EMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQ 172 (340)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECS
T ss_pred HHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEcc
Confidence 34567788889999999999999999999888887555555443
No 205
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=40.58 E-value=72 Score=23.94 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=37.6
Q ss_pred HHhCCCeEEEEEcChHHHHHHHH--HHcC-cC-----eEEEcccC-----------CchhHHHHHHHHHHHHhCCc-eEE
Q psy6650 78 LRKLNSRLFVIRGQPADILPKLF--KEWK-TT-----CLTFEEDP-----------EPFGKVRDQNIMTLCRELNI-EVI 137 (156)
Q Consensus 78 L~~~g~~L~v~~g~~~~~l~~l~--~~~~-~~-----~V~~~~~~-----------~~~~~~~d~~v~~~l~~~~i-~~~ 137 (156)
|++.|+.+.+..|.+...+..+. ++.+ .+ .|..|-.+ .+.......++.+.+++.++ .+.
T Consensus 57 l~~~Gi~v~iaTGR~~~~~~~~~~~~~l~~~~~~~~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~ 136 (301)
T 2b30_A 57 AIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTIVYDQIGYTLLDETIETDVYAELISYLVEKNLVNQT 136 (301)
T ss_dssp HHHHTCEEEEECSSCHHHHHHHHCHHHHHHHTCCSCSEEEGGGTEEECTTCCEEEECCCCHHHHHHHHHHHHHTTCGGGE
T ss_pred HHHCCCEEEEEcCCCHHHHHHHhhHHhhcccccCCCeEEEcCCeEEEeCCCCEEEEccCCHHHHHHHHHHHHHcCCceEE
Confidence 44569999999999988877777 6655 43 22222111 12233445566677776677 554
Q ss_pred Ee
Q psy6650 138 AR 139 (156)
Q Consensus 138 ~~ 139 (156)
.+
T Consensus 137 ~~ 138 (301)
T 2b30_A 137 IF 138 (301)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 206
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=40.47 E-value=89 Score=23.61 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChH----HHHHHHHHHcCcCe-----EEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPA----DILPKLFKEWKTTC-----LTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~----~~l~~l~~~~~~~~-----V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
++.++-+.|++.|+.+.++.|.+. +......++.|+.. |++.... ++-. ..++.+.+.|..+..+-
T Consensus 105 g~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~~~~~~Lilr~~~-~~K~----~~r~~L~~~gy~iv~~i 179 (260)
T 3pct_A 105 GAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKKDK-SNKS----VRFKQVEDMGYDIVLFV 179 (260)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCCCSTTTEEEESSC-SSSH----HHHHHHHTTTCEEEEEE
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCccccceeEecCCC-CChH----HHHHHHHhcCCCEEEEE
Confidence 556677888999999999987764 36666777778863 6665332 2211 22233444466667666
Q ss_pred CCeeecC
Q psy6650 141 SHTLYDL 147 (156)
Q Consensus 141 ~~~L~~~ 147 (156)
+..+.+.
T Consensus 180 GD~~~Dl 186 (260)
T 3pct_A 180 GDNLNDF 186 (260)
T ss_dssp ESSGGGG
T ss_pred CCChHHc
Confidence 6655553
No 207
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=40.43 E-value=80 Score=22.49 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=37.6
Q ss_pred EEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHH
Q psy6650 88 IRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR 130 (156)
Q Consensus 88 ~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~ 130 (156)
+.|+..+.++..+...++.+.+++.+.+..-++.|.....++.
T Consensus 88 ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~ls 130 (174)
T 3iht_A 88 ILGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLIS 130 (174)
T ss_dssp EESCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhh
Confidence 4699999999988889999999999999988888888888775
No 208
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=40.29 E-value=1e+02 Score=22.21 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc----ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG----QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g----~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~ 137 (156)
.|+.+-+..+++.++++|..+.+... ++. +.+..+.+ .+++.|++......... ..+ +.+.+.|++++
T Consensus 20 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~~~---~~~-~~~~~~~iPvV 94 (289)
T 3brs_A 20 DFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK-RKPDVILLAAADYEKTY---DAA-KEIKDAGIKLI 94 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH-TCCSEEEECCSCTTTTH---HHH-TTTGGGTCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChHHhH---HHH-HHHHHCCCcEE
Confidence 47778888888999999999888643 333 23444444 58998877543221111 122 23445689998
Q ss_pred EecCC
Q psy6650 138 ARVSH 142 (156)
Q Consensus 138 ~~~~~ 142 (156)
.++..
T Consensus 95 ~~~~~ 99 (289)
T 3brs_A 95 VIDSG 99 (289)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 88653
No 209
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=39.83 E-value=40 Score=24.26 Aligned_cols=42 Identities=10% Similarity=0.049 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCC-eEEEEEcChHHHHHHHHHHcCcCeEEEc
Q psy6650 70 CLEDLDINLRKLNS-RLFVIRGQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 70 sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
.+...++..++.|. .+.++.|+..+.++.......++.|+++
T Consensus 70 ~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 70 GVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp HHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 44445555566665 4888899998877765555567888877
No 210
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=39.27 E-value=72 Score=22.93 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEEcChHHHHHHHHHHcCcC
Q psy6650 68 LQCLEDLDINLRKLNS-RLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
+..|.++.+++++.|+ .++.+..++.+...+++++++..
T Consensus 54 ~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 93 (241)
T 1nm3_A 54 LPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSE 93 (241)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCC
Confidence 4678888889999999 89988888888889999998875
No 211
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=39.19 E-value=33 Score=24.51 Aligned_cols=45 Identities=7% Similarity=-0.189 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----Ce-EEEcccCC
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TC-LTFEEDPE 115 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~-V~~~~~~~ 115 (156)
+.++-+.|++.|..+.++.+.+...+..+.+..++ +. |+...+..
T Consensus 115 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~i~~~~~~~ 164 (259)
T 4eek_A 115 AAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTELAGEHIYDPSWVG 164 (259)
T ss_dssp HHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCHHHHCSCEECGGGGT
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChHhhccceEEeHhhcC
Confidence 45666677888999999988888777878887765 35 66655543
No 212
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=39.12 E-value=37 Score=27.02 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
+..+++-|+.+|++.++..|+...++-.|+++ +....+++.+
T Consensus 146 ~~~i~~lL~~~GIp~i~apgEADaqiA~La~~-g~~~~I~S~D 187 (363)
T 3ory_A 146 VRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKK-GDAYASASQD 187 (363)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT-TSCSEEECSS
T ss_pred HHHHHHHHHHCCCCEEEeCccHHHHHHHHHHC-CCeEEEECCC
Confidence 77888889999999999999888888777765 4433444433
No 213
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=38.96 E-value=48 Score=23.99 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=36.7
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcC----cCeEEEc--------ccC---CchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWK----TTCLTFE--------EDP---EPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~----~~~V~~~--------~~~---~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
++|++.|+.+.+..|.+ ..+..+.++++ .+.+++. ... .+.......++.+.+++.|+.+..+.
T Consensus 30 ~~l~~~G~~~~iaTGR~-~~~~~~~~~l~~~~~~~~~i~~nGa~i~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~ 108 (261)
T 2rbk_A 30 EAAHAKGLKIFIATGRP-KAIINNLSELQDRNLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVE 108 (261)
T ss_dssp HHHHHTTCEEEEECSSC-GGGCCSCHHHHHTTCCCEEEEGGGTEEEETTEEEEECCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHCCCEEEEECCCh-HHHHHHHHHhCcccccCeEEEeCCEEEEECCEEEEecCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 34556799999999998 66544444443 3322221 110 11223444566667776677766654
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
+.
T Consensus 109 ~~ 110 (261)
T 2rbk_A 109 EH 110 (261)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 214
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=38.78 E-value=81 Score=22.26 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCC-eEEEEEcChHHHHHHHHHHcCcC
Q psy6650 68 LQCLEDLDINLRKLNS-RLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
...+.++..+++++|. .++.+.-+......+++++.++.
T Consensus 68 l~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~ 107 (176)
T 4f82_A 68 VPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTA 107 (176)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3567777888889999 89999988888999999998886
No 215
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=38.53 E-value=1.1e+02 Score=22.29 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=41.2
Q ss_pred HHHhCCCeEEEEEcChHHHHHHHHHHcCcCe---------------EEEcccCCchhHHHHHHHHHHHHhC--CceEEEe
Q psy6650 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTC---------------LTFEEDPEPFGKVRDQNIMTLCREL--NIEVIAR 139 (156)
Q Consensus 77 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~---------------V~~~~~~~~~~~~~d~~v~~~l~~~--~i~~~~~ 139 (156)
+|++.|+.+.+..|.+...+..+.+..+... +.+... ......+++.+.+.+. ++.+..+
T Consensus 50 ~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~---l~~~~~~~i~~~~~~~~~~~~~~~~ 126 (283)
T 3dao_A 50 RLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYP---MDEDIWKGMCRMVRDELPACDYFAA 126 (283)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHTGGGGGGCEEEETTTTEEECSSCEEEECC---CCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHcCCCcEEEECCCcEEEECCEEEEEec---CCHHHHHHHHHHHHHhcCCceEEEE
Confidence 3456799999999999988888887765431 111111 1233345555666655 7777766
Q ss_pred cCCeee
Q psy6650 140 VSHTLY 145 (156)
Q Consensus 140 ~~~~L~ 145 (156)
.....+
T Consensus 127 ~~~~~~ 132 (283)
T 3dao_A 127 TPDFCF 132 (283)
T ss_dssp CSSCEE
T ss_pred eCCeEE
Confidence 655443
No 216
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=38.44 E-value=1.2e+02 Score=22.55 Aligned_cols=73 Identities=5% Similarity=0.061 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcC--cCeEEEcccCCchhHHHHHHHHHHHHhCCceEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWK--TTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~--~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~ 137 (156)
.|+.+-+..+++.+++.|..+.+... ++. +.+..++++ + ++.|++.... ... ....+ +.+.+.|++++
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~-~~~vdgiIi~~~~-~~~--~~~~~-~~~~~~~iPvV 92 (332)
T 2rjo_A 18 PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQK-TGGNLVLNVDPND-SAD--ARVIV-EACSKAGAYVT 92 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHH-TTTCEEEEECCSS-HHH--HHHHH-HHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHC-CCCCCEEEEeCCC-HHH--HHHHH-HHHHHCCCeEE
Confidence 47788888999999999999988764 332 245555544 6 8888875321 211 11222 33445689999
Q ss_pred EecCC
Q psy6650 138 ARVSH 142 (156)
Q Consensus 138 ~~~~~ 142 (156)
.++..
T Consensus 93 ~~~~~ 97 (332)
T 2rjo_A 93 TIWNK 97 (332)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 88653
No 217
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=38.35 E-value=1.1e+02 Score=23.60 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=27.1
Q ss_pred HHHHcCcCeEEEcccCCchhHHHHH-HHHHHHHhCCceEEEec
Q psy6650 99 LFKEWKTTCLTFEEDPEPFGKVRDQ-NIMTLCRELNIEVIARV 140 (156)
Q Consensus 99 l~~~~~~~~V~~~~~~~~~~~~~d~-~v~~~l~~~~i~~~~~~ 140 (156)
+++..++.-++.+-+|.+..+..++ .+...|++.||.+..+.
T Consensus 181 ~~~~~~~~~~~~Q~~~~l~~~~~~~~~l~~~~~~~gi~v~a~s 223 (346)
T 3n6q_A 181 LLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFT 223 (346)
T ss_dssp HHHTTTCCCCEEECBCBTTBCHHHHTTHHHHHHHHTCEEEEBS
T ss_pred HHHHcCCCeEEEeccCchhhcCcchhhHHHHHHHcCCeEEEec
Confidence 3333444444556666666655554 68888988899988764
No 218
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=38.33 E-value=1.2e+02 Score=22.53 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcCh-HHHHHHHH---HHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQP-ADILPKLF---KEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~-~~~l~~l~---~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
|+.+-+..+++.+++.|..+.+...+. .+.-.+++ ...+++.|++....... ..+ +.+.+.|++++.++.
T Consensus 74 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-----~~~-~~l~~~~iPvV~~~~ 147 (332)
T 2hsg_A 74 FYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-----EHV-EELKKSPVPVVLAAS 147 (332)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-----HHH-HHHTTSSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-----HHH-HHHHhCCCCEEEEcc
Confidence 677778888888999999988876432 22212222 23578888775432221 122 334456999998865
Q ss_pred C
Q psy6650 142 H 142 (156)
Q Consensus 142 ~ 142 (156)
.
T Consensus 148 ~ 148 (332)
T 2hsg_A 148 I 148 (332)
T ss_dssp C
T ss_pred c
Confidence 3
No 219
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=38.05 E-value=42 Score=22.19 Aligned_cols=71 Identities=13% Similarity=-0.017 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH-cCcCeEEEcccCCchhHHHHHHHH--HHHHhCCceEEEecC
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKE-WKTTCLTFEEDPEPFGKVRDQNIM--TLCRELNIEVIARVS 141 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~-~~~~~V~~~~~~~~~~~~~d~~v~--~~l~~~~i~~~~~~~ 141 (156)
+...++.++..|....+..++..+.++.+... ..++.|+++..+........+.+. +.++..|+-+.....
T Consensus 76 ~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 76 VRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp HHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred HHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 33444445545556778889988766655432 257888988655322222233333 334333554444433
No 220
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=37.93 E-value=1.4e+02 Score=22.99 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhC-------CCeEEEEEcChHHHHHHHHHHcCcCeEEEc---ccCCchhHHHHHHHHHHHHhCCceE
Q psy6650 67 LLQCLEDLDINLRKL-------NSRLFVIRGQPADILPKLFKEWKTTCLTFE---EDPEPFGKVRDQNIMTLCRELNIEV 136 (156)
Q Consensus 67 l~~sL~~L~~~L~~~-------g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~---~~~~~~~~~~d~~v~~~l~~~~i~~ 136 (156)
+.+.|.+|++++++. +..+++.+. .+.=|++.+|.+.++.. .+-.| ..++..++.+.+++.+|++
T Consensus 168 ~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~----af~Yfa~~yGl~~~~~~~i~~~~eP-s~~~l~~l~~~ik~~~v~~ 242 (307)
T 3ujp_A 168 YSEQLKAIDRQLGADLEQVPANQRFLVSCEG----AFSYLARDYGMEEIYMWPINAEQQF-TPKQVQTVIEEVKTNNVPT 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHSSSCGGGCEEEEEES----TTHHHHHHTTCEEEEEESSCCSSCC-CHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHhhccccCCEEEEECc----hHHHHHHHCCCcEEEeeccCCCCCC-CHHHHHHHHHHHHhcCCcE
Confidence 445666776666531 233544332 23345555555544321 11111 2233344445555555555
Q ss_pred EEec
Q psy6650 137 IARV 140 (156)
Q Consensus 137 ~~~~ 140 (156)
..++
T Consensus 243 If~e 246 (307)
T 3ujp_A 243 IFCE 246 (307)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 221
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=37.86 E-value=40 Score=26.43 Aligned_cols=43 Identities=12% Similarity=-0.046 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
+.+..+++-|+.+|++.++..|+..+++-.|+++-.++.| ++.
T Consensus 127 ~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I-~S~ 169 (346)
T 2izo_A 127 IMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAA-ASQ 169 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEE-ECS
T ss_pred HHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEE-ECC
Confidence 5667788889999999999999888888888875333444 444
No 222
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=37.84 E-value=1.2e+02 Score=22.13 Aligned_cols=72 Identities=17% Similarity=0.056 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcC---h-----H------HHHHHHHHHcCcCeEEEcccCCch----h------HHHHH
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQ---P-----A------DILPKLFKEWKTTCLTFEEDPEPF----G------KVRDQ 123 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~---~-----~------~~l~~l~~~~~~~~V~~~~~~~~~----~------~~~d~ 123 (156)
.+.+.++++.|++.|+.+...... + . ....++++..|+..|.+.....+. + .+..+
T Consensus 47 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~ 126 (286)
T 3dx5_A 47 YETTERELNCLKDKTLEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIR 126 (286)
T ss_dssp HHHHHHHHHHTGGGTCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHH
Confidence 367889999999999998876321 1 1 123457778899998664333221 1 12223
Q ss_pred HHHHHHHhCCceEEEe
Q psy6650 124 NIMTLCRELNIEVIAR 139 (156)
Q Consensus 124 ~v~~~l~~~~i~~~~~ 139 (156)
++.+.+++.||++...
T Consensus 127 ~l~~~a~~~Gv~l~lE 142 (286)
T 3dx5_A 127 MICELFAQHNMYVLLE 142 (286)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCEEEEe
Confidence 3444455678876544
No 223
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=37.43 E-value=61 Score=22.37 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHc
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEW 103 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 103 (156)
-+..|.++.+++++.|+.++.+..++.+.+.++++++
T Consensus 49 e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 85 (186)
T 1n8j_A 49 ELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS 85 (186)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc
Confidence 4577888888998889998888888888888999887
No 224
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=37.37 E-value=53 Score=22.84 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
.+.++=+.|++.|+++.|+.+.+...+..+++..++.
T Consensus 90 g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~ 126 (225)
T 1nnl_A 90 GIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIP 126 (225)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCC
Confidence 4556667788899999999998888888889988886
No 225
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=36.91 E-value=53 Score=22.60 Aligned_cols=45 Identities=7% Similarity=0.097 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
++.++-+.|++.|+++.+..+.+........+..+. +.++...+.
T Consensus 88 g~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~~~fd~~~~~~~~ 136 (216)
T 3kbb_A 88 GVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQV 136 (216)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGS
T ss_pred cHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCCcccccccccccc
Confidence 345677788899999999998887777777777664 456666554
No 226
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=36.64 E-value=20 Score=26.58 Aligned_cols=14 Identities=14% Similarity=-0.218 Sum_probs=6.8
Q ss_pred HHHHHHHHcCcCeE
Q psy6650 95 ILPKLFKEWKTTCL 108 (156)
Q Consensus 95 ~l~~l~~~~~~~~V 108 (156)
.+.++++++++...
T Consensus 51 ~~~~~l~~~gl~i~ 64 (294)
T 3vni_A 51 ELKACAHGNGITLT 64 (294)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCeEE
Confidence 44455555555433
No 227
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=36.60 E-value=55 Score=21.25 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=47.3
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD 94 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~ 94 (156)
...++-+.-+|-..--+.|..+...-.+-....|+|-..... .. .==...|..+.+.+++.|+.+.+..-++
T Consensus 20 ~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~~vvlDls~v~~--iD----ssgl~~L~~~~~~~~~~g~~l~l~~~~~-- 91 (130)
T 4dgh_A 20 ELAVYALEGPFFFAAAETFERVMGSIQETPQILILRLKWVPF--MD----ITGIQTLEEMIQSFHKRGIKVLISGANS-- 91 (130)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHHHHSSSCCSEEEEECTTCCC--CC----HHHHHHHHHHHHHHHTTTCEEEEECCCH--
T ss_pred CEEEEEEeeeEeehhHHHHHHHHHHhccCCCEEEEECCCCCc--cc----HHHHHHHHHHHHHHHHCCCEEEEEcCCH--
Confidence 456777777887776666666654311111345666432221 11 1224678889999999999998775433
Q ss_pred HHHHHHHHcCc
Q psy6650 95 ILPKLFKEWKT 105 (156)
Q Consensus 95 ~l~~l~~~~~~ 105 (156)
.+.++.+..+.
T Consensus 92 ~v~~~l~~~gl 102 (130)
T 4dgh_A 92 RVSQKLVKAGI 102 (130)
T ss_dssp HHHHHHHHTTH
T ss_pred HHHHHHHHcCC
Confidence 22334444444
No 228
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=36.40 E-value=12 Score=29.42 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=23.4
Q ss_pred HcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 102 EWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 102 ~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+.++.-++.+-+|.+..+..+..+...|++.||.+..+.
T Consensus 205 ~~~~~~~~~Q~~~~~~~~~~e~~ll~~~~~~gI~v~a~s 243 (353)
T 3erp_A 205 DLGTPCLIHQPKYSLFERWVEDGLLALLQEKGVGSIAFS 243 (353)
T ss_dssp HHTCCEEEEECBCBTTBCGGGGTHHHHHHHHTCEEEEBS
T ss_pred HcCCCeEEeeccccccccchhhHHHHHHHHcCCeEEEec
Confidence 334444455556655544434457778888888887753
No 229
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=36.01 E-value=45 Score=24.63 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
.++|..| ++.|+.+.+..|.+...+..++++.+.+
T Consensus 32 ~~~l~~l----~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 66 (275)
T 1xvi_A 32 APWLTRL----REANVPVILCSSKTSAEMLYLQKTLGLQ 66 (275)
T ss_dssp HHHHHHH----HHTTCCEEEECSSCHHHHHHHHHHTTCT
T ss_pred HHHHHHH----HHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3455444 4579999999999998888888887764
No 230
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=35.99 E-value=1.2e+02 Score=27.32 Aligned_cols=37 Identities=8% Similarity=0.034 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
...+.-++|++.|+...++.||....-..++++.|+.
T Consensus 539 ea~~aI~~l~~aGI~v~MiTGD~~~TA~aIA~~lGI~ 575 (920)
T 1mhs_A 539 DTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLG 575 (920)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhhcCceEEEEcCCCHHHHHHHHHHcCCC
Confidence 3344445567789999999999999999999999985
No 231
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=35.85 E-value=99 Score=21.61 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
.+.++=+.|++.|..+.++.+.+......+.+..++ +.+++..+.
T Consensus 98 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 146 (241)
T 2hoq_A 98 GARKVLIRLKELGYELGIITDGNPVKQWEKILRLELDDFFEHVIISDFE 146 (241)
T ss_dssp THHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCGGGCSEEEEGGGG
T ss_pred cHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcHhhccEEEEeCCC
Confidence 455566677788999999988777777777777665 456665544
No 232
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=35.85 E-value=1.2e+02 Score=21.75 Aligned_cols=70 Identities=9% Similarity=-0.025 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc--C-----h-----HHHHHHHHHHcCcCeEEEcccCCc-----hh-HHHHHHHHHHHH
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRG--Q-----P-----ADILPKLFKEWKTTCLTFEEDPEP-----FG-KVRDQNIMTLCR 130 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g--~-----~-----~~~l~~l~~~~~~~~V~~~~~~~~-----~~-~~~d~~v~~~l~ 130 (156)
+.+.++++.+++.|+.+..+.. . + .....+++++.++..|.+...... .. .+..+++.+.++
T Consensus 51 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~ 130 (272)
T 2q02_A 51 LNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFA 130 (272)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 4467888889999999865542 1 1 123345777889999876432211 11 334455556666
Q ss_pred hCCceEEE
Q psy6650 131 ELNIEVIA 138 (156)
Q Consensus 131 ~~~i~~~~ 138 (156)
+.||++..
T Consensus 131 ~~gv~l~~ 138 (272)
T 2q02_A 131 RYDIQGLV 138 (272)
T ss_dssp TTTCEEEE
T ss_pred HcCCEEEE
Confidence 77987654
No 233
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=35.82 E-value=65 Score=23.12 Aligned_cols=71 Identities=10% Similarity=-0.044 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--Ch---HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QP---ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~---~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++ .+.+..+. ..+++.|++...... . ..+ +.+.+.|++++.+
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~-~----~~~-~~~~~~~iPvV~~ 84 (276)
T 2h0a_A 12 EFYRRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTL-AYLTDGLILASYDLT-E----RFE-EGRLPTERPVVLV 84 (276)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEECCCCSCCCCC----------CCCSEEEEESCCCC------------CCSCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHH-hCCCCEEEEecCCCC-H----HHH-HHHhhcCCCEEEE
Confidence 47788889999999999999887642 22 23455554 457888876532221 1 122 3444568999888
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 85 ~~~ 87 (276)
T 2h0a_A 85 DAQ 87 (276)
T ss_dssp SSC
T ss_pred ecc
Confidence 653
No 234
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=35.76 E-value=1.4e+02 Score=22.60 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=12.5
Q ss_pred HHHHHHHcCcCeEEEcccCCc
Q psy6650 96 LPKLFKEWKTTCLTFEEDPEP 116 (156)
Q Consensus 96 l~~l~~~~~~~~V~~~~~~~~ 116 (156)
|.+++++.++..||++....+
T Consensus 224 l~~~ik~~~v~~if~e~~~~~ 244 (294)
T 3hh8_A 224 LIEKLKVIKPSALFVESSVDR 244 (294)
T ss_dssp HHHHHHHSCCSCEEEETTSCS
T ss_pred HHHHHHHcCCCEEEEeCCCCc
Confidence 445555667777777665543
No 235
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=35.36 E-value=69 Score=22.24 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcC----cCeEEEcccC
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWK----TTCLTFEEDP 114 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~----~~~V~~~~~~ 114 (156)
..+.++=+.|++.|.++.++.+.+.. +..+++..+ ++.|+...+.
T Consensus 98 ~~~~~~l~~l~~~g~~~~i~Tn~~~~-~~~~l~~~gl~~~f~~~~~~~~~ 146 (220)
T 2zg6_A 98 DDTLEFLEGLKSNGYKLALVSNASPR-VKTLLEKFDLKKYFDALALSYEI 146 (220)
T ss_dssp TTHHHHHHHHHTTTCEEEECCSCHHH-HHHHHHHHTCGGGCSEEC-----
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCcHH-HHHHHHhcCcHhHeeEEEecccc
Confidence 44556666778889999998877654 566777776 4566665543
No 236
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=35.32 E-value=2.2e+02 Score=25.53 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
..+.-+.|++.|+...++.|+.......++++.++.
T Consensus 608 ~~~~I~~l~~~Gi~v~miTGD~~~ta~~ia~~lgi~ 643 (995)
T 3ar4_A 608 VMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 643 (995)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCEEEEECCCCHHHHHHHHHHcCcC
Confidence 445556677889999999999999999999999884
No 237
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=35.29 E-value=97 Score=22.25 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcCh----HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQP----ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~----~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
|+.+-+..+++.++++|..+.+...+. .+.+..+ ...+++.|++... ... ..+.. .|++++.++.
T Consensus 19 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~--~~~----~~~~~----~~iPvV~~~~ 87 (280)
T 3gyb_A 19 WFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSA-LSMRPDGIIIAQD--IPD----FTVPD----SLPPFVIAGT 87 (280)
T ss_dssp GGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHH-HTTCCSEEEEESC--C----------------CCCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHH-HhCCCCEEEecCC--CCh----hhHhh----cCCCEEEECC
Confidence 666778888899999999999886541 2245544 4458998883322 221 12222 5899988875
Q ss_pred C
Q psy6650 142 H 142 (156)
Q Consensus 142 ~ 142 (156)
.
T Consensus 88 ~ 88 (280)
T 3gyb_A 88 R 88 (280)
T ss_dssp C
T ss_pred C
Confidence 4
No 238
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=34.96 E-value=12 Score=25.79 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=45.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhCCCeEEEEEcC----hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCce
Q psy6650 60 GINKWRFLLQCLEDLDINLRKLNSRLFVIRGQ----PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135 (156)
Q Consensus 60 ~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~ 135 (156)
|..-+.||.++|.+=+-..++.+..++++.|- ...+|.+++++.+...- .+..+.+..+.|++.+++.|+.
T Consensus 8 Ge~Fl~WLk~gi~~~~L~iN~~~A~VH~V~g~vfLvsP~IF~~Y~~e~~~~~~-----~~~~~~~~~~~vQk~FEkL~lH 82 (135)
T 2ipq_X 8 GDLFWSWLRDGLREGDIPVNTADACVHLTCGFVFISVPGVFFLFLKSHSRSCS-----SGLKESGRKEQVQAAFEKMRKH 82 (135)
T ss_dssp HHHHHHHHHHHHHTTCSCBSSTTCSEEEETTEEEEETTHHHHHHHHHC----------------CHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhhhcCceeecCCCCeEEEECCEEEEEChHHHHHHHHHcCcccc-----ccccchhHHHHHHHHHHHhccc
Confidence 55667899999988777777888899998763 55799999999755321 1122334556677888765543
No 239
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=34.68 E-value=74 Score=20.98 Aligned_cols=12 Identities=42% Similarity=0.352 Sum_probs=5.6
Q ss_pred HHHHHHHHHHcC
Q psy6650 93 ADILPKLFKEWK 104 (156)
Q Consensus 93 ~~~l~~l~~~~~ 104 (156)
.+.+.+++++.+
T Consensus 10 ~e~i~~~i~~~~ 21 (118)
T 2wul_A 10 AEQLDALVKKDK 21 (118)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHhcCC
Confidence 344455555433
No 240
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=34.67 E-value=1.4e+02 Score=22.15 Aligned_cols=73 Identities=5% Similarity=-0.036 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 65 RFLLQCLEDLDINLRKL-NSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~-g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
.|+.+-+..+++.+++. |..+.+... ++. +.+..++ ..+++.|++.... ... ....+ +.+.+.|++++.
T Consensus 18 ~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~-~~~--~~~~~-~~~~~~~iPvV~ 92 (325)
T 2x7x_A 18 SWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFM-DEGVDLLIISANE-AAP--MTPIV-EEAYQKGIPVIL 92 (325)
T ss_dssp HHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSS-HHH--HHHHH-HHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC-HHH--HHHHH-HHHHHCCCeEEE
Confidence 36667778888889998 999988753 332 2345555 4589998876321 111 11223 344457999998
Q ss_pred ecCC
Q psy6650 139 RVSH 142 (156)
Q Consensus 139 ~~~~ 142 (156)
++..
T Consensus 93 ~~~~ 96 (325)
T 2x7x_A 93 VDRK 96 (325)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 8653
No 241
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=34.40 E-value=1.2e+02 Score=21.25 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCeEEEEEcChHH-HHHH---HHHHcCcCeEEEcccCC-chhHHHHHHHHHHHHhCCceEE
Q psy6650 73 DLDINLRKLNSRLFVIRGQPAD-ILPK---LFKEWKTTCLTFEEDPE-PFGKVRDQNIMTLCRELNIEVI 137 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~-~l~~---l~~~~~~~~V~~~~~~~-~~~~~~d~~v~~~l~~~~i~~~ 137 (156)
+|.+.|+++|+.=+++.|-..+ ++.. -+...|...++...... ......+..+ +.+++.|+.+.
T Consensus 115 ~L~~~L~~~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~Da~~~~~~~~~~~al-~~m~~~G~~i~ 183 (186)
T 3gbc_A 115 PLLNWLRQRGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAAL-EEMRTASVELV 183 (186)
T ss_dssp BHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHH-HHHHHTTCEEE
T ss_pred cHHHHHHhcCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEhhhcCCCCHHHHHHHH-HHHHHcCCEEe
Confidence 6788888899987777763322 1111 11234665555444433 3333444444 44556788764
No 242
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=34.40 E-value=48 Score=26.54 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=29.0
Q ss_pred HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 95 ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 95 ~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|.+++++.++..||...+... + .++|++.++..+++++.++
T Consensus 270 qIk~~vk~~~lksVFIATDa~~-~---~~ELk~~L~~~~v~vv~~~ 311 (362)
T 3zy2_A 270 QIVEKVGSIGAKSVFVASDKDH-M---IDEINEALKPYEIEAHRQE 311 (362)
T ss_dssp HHHHHHHHHTCSEEEEEESSCC-C---HHHHHHHHGGGTCCEECCS
T ss_pred HHHHHHHhcCCcEEEEecCCHH-H---HHHHHHHhhccCceEEEeC
Confidence 4556677779999998877655 2 3566677766678777654
No 243
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=34.37 E-value=18 Score=18.35 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHHHhCCCeEEEEEcChHHHHHHHH
Q psy6650 74 LDINLRKLNSRLFVIRGQPADILPKLF 100 (156)
Q Consensus 74 L~~~L~~~g~~L~v~~g~~~~~l~~l~ 100 (156)
+.+.|+++|.|..++-.++.+....|.
T Consensus 2 V~~~LR~lgePi~lFGE~~~~Rr~RLr 28 (31)
T 1mzw_B 2 VKASLRALGEPITLFGEGPAERRERLR 28 (31)
T ss_dssp HHHHHHHTTCCSEETTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCeeecCCChHHHHHHHH
Confidence 567889999998876656666655554
No 244
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=34.33 E-value=1.1e+02 Score=20.91 Aligned_cols=37 Identities=14% Similarity=-0.060 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 70 CLEDLDINLRKL-NSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 70 sL~~L~~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
.+.++=+.|++. |+++.++.+.+........+..++.
T Consensus 97 ~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~ 134 (234)
T 2hcf_A 97 GVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGID 134 (234)
T ss_dssp THHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCS
T ss_pred CHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCch
Confidence 445566677888 8899888887777777777776654
No 245
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=34.31 E-value=1.1e+02 Score=20.99 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
.+.++=+.|++.|.++.++.+.+...+..+.+..++ +.++...+.
T Consensus 99 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 147 (232)
T 1zrn_A 99 EVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPV 147 (232)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEESGGG
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChHhhhheEEEeccc
Confidence 445555667888999999988887777777777664 556665543
No 246
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=33.88 E-value=1.4e+02 Score=22.67 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=38.0
Q ss_pred eEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 84 RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 84 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
+..+..|. ..+..+++.-.+.-|+...+.+|.+.. ..+...|++.||++..+.+
T Consensus 122 p~~lk~Gv--neVtKaIekgKAqLVVIA~DvdPielv--~~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 122 PIVLKYGL--NHITTLIENKQAKLVVIAHDVDPIELV--IFLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp CCCEEECH--HHHHHHHHTSCCSEEEEESCCSSTHHH--HHHHHHHHHTTCCEEEESC
T ss_pred Cceeecch--HHHHHHHHcCCceEEEEeCCCChHHHH--HHHHHHHHHcCCCEEEECC
Confidence 45666773 344567777788888888888887644 3456778888888887765
No 247
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=33.87 E-value=41 Score=22.21 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCh--HH---HHHHHHHHcCcCeEEEc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQP--AD---ILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~--~~---~l~~l~~~~~~~~V~~~ 111 (156)
++....+.+++....|+|+.+|. .+ .|+.+|++++|--+++.
T Consensus 29 G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~ 75 (113)
T 3jyw_G 29 GLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVK 75 (113)
T ss_dssp SHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECS
T ss_pred hHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34444444554455566655432 22 25566666666555543
No 248
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=33.85 E-value=77 Score=21.62 Aligned_cols=38 Identities=0% Similarity=-0.089 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCe-EEEEEcChHHHHHHHHHHcCc
Q psy6650 68 LQCLEDLDINLRKLNSR-LFVIRGQPADILPKLFKEWKT 105 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 105 (156)
+..|.++.+++++.|+. ++.+.-+..+...++++++++
T Consensus 64 ~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~ 102 (171)
T 2pwj_A 64 VPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA 102 (171)
T ss_dssp HHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 45677888889899999 988887777788889999886
No 249
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=33.50 E-value=1.4e+02 Score=21.67 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCeEEEEEcC--------------h---------HHHHHHHHHHcCcCeEEEcc
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQ--------------P---------ADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~--------------~---------~~~l~~l~~~~~~~~V~~~~ 112 (156)
+.++++.|++.|+.+..+... + .....++++..|+..|.+..
T Consensus 50 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~ 114 (269)
T 3ngf_A 50 ADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDCRTLHAMS 114 (269)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHHTTCCEEECCB
T ss_pred HHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 688999999999998876421 1 11234567788999987743
No 250
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=33.45 E-value=1.1e+02 Score=21.02 Aligned_cols=41 Identities=5% Similarity=0.035 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcC--------hHHHHHHHH-HHcCcC
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQ--------PADILPKLF-KEWKTT 106 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~-~~~~~~ 106 (156)
-....|.++.+++...|+.++.+.-+ ..+.+.+++ ++++++
T Consensus 65 ~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2vup_A 65 GGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAE 114 (190)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCC
Confidence 35688899999999889998888654 567788888 777765
No 251
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=33.42 E-value=1.3e+02 Score=23.13 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q psy6650 67 LLQCLEDLDINLR 79 (156)
Q Consensus 67 l~~sL~~L~~~L~ 79 (156)
+.+.|.+|+++++
T Consensus 170 ~~~~L~~Ld~~~~ 182 (312)
T 2o1e_A 170 YIAKLQDLDKLYR 182 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455556655544
No 252
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=33.39 E-value=70 Score=25.24 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEE
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 110 (156)
...+++-|+.+|++.++..++..+++-.|+++-.++.|+.
T Consensus 130 ~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S 169 (352)
T 3qe9_Y 130 AHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIIT 169 (352)
T ss_dssp HHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEe
Confidence 4567777888888888877777777777777533444443
No 253
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=33.31 E-value=1.1e+02 Score=20.53 Aligned_cols=37 Identities=8% Similarity=0.220 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
.+.++-+.|++.|.++.++.+.+...+..+++..++.
T Consensus 86 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~ 122 (219)
T 3kd3_A 86 GIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIP 122 (219)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCC
Confidence 4566777888999999999998888888888888883
No 254
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=33.27 E-value=1.2e+02 Score=22.72 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 93 ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.+.++++..++.-++.+-+|.+... +..+...|++.||.+..+.
T Consensus 145 ~~~l~~~~~~~~~~~~~~Q~~~~~~~~--~~~l~~~~~~~gi~v~a~s 190 (276)
T 3f7j_A 145 VHHLEELLKDAEIKPMVNQVEFHPRLT--QKELRDYCKGQGIQLEAWS 190 (276)
T ss_dssp HHHHHHHHHHCSSCCSEEEEECBTTBC--CHHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHhcCCCceeeeeeeccccC--CHHHHHHHHHCCCEEEEec
Confidence 344455554444433333333333332 2456677777788777663
No 255
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=33.26 E-value=1.5e+02 Score=21.99 Aligned_cols=73 Identities=4% Similarity=-0.059 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEE---cChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIR---GQPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
.|+.+-+..+++.++++|..+.+.. +++.. .+..++. .+++.|++...-..... ..+ +.+.+.||+++.
T Consensus 16 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~-~~vdgiii~~~~~~~~~---~~~-~~a~~~gipvV~ 90 (316)
T 1tjy_A 16 GFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVN-QGYDAIIVSAVSPDGLC---PAL-KRAMQRGVKILT 90 (316)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHH-TTCSEEEECCSSSSTTH---HHH-HHHHHTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHH---HHH-HHHHHCcCEEEE
Confidence 3666777778888889999988752 34433 4555554 48998877543221111 122 334557999999
Q ss_pred ecCC
Q psy6650 139 RVSH 142 (156)
Q Consensus 139 ~~~~ 142 (156)
++..
T Consensus 91 ~d~~ 94 (316)
T 1tjy_A 91 WDSD 94 (316)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 8653
No 256
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=33.18 E-value=1.3e+02 Score=22.67 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 93 ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.+.++++..++.-++.+-+|.+..+ +..+...|++.||.+..+.
T Consensus 166 ~~~l~~~~~~~~~~p~~~Q~~~~~~~~--~~~l~~~~~~~gi~v~a~s 211 (283)
T 3o0k_A 166 TADLERLIKESGVTPVLNQIELHPQFQ--QDELRLFHGKHDIATEAWS 211 (283)
T ss_dssp HHHHHHHHHHHSCCCSEEEEECBTTBC--CHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHhCCCCeEEEEeecCcccC--cHHHHHHHHHCCcEEEEec
Confidence 344555554444432233333444332 2356777877888877663
No 257
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}
Probab=33.07 E-value=1.3e+02 Score=23.11 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCC-eEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 69 QCLEDLDINLRKLNS-RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
++|.+|.+ .|. .-+=+..-..+.+.++.+..++.-++.+-++.+...+ ..+...|++.||.+..+.
T Consensus 159 ~al~~l~~----~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~c~~~gI~v~ays 225 (334)
T 3krb_A 159 RAMEQLVE----EGLVKHIGVSNYTVPLLADLLNYAKIKPLVNQIEIHPWHPN--DATVKFCLDNGIGVTAYS 225 (334)
T ss_dssp HHHHHHHH----HTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHH----cCCccEEEEecCCHHHHHHHHHhCCCceEEeeeecCccccc--HHHHHHHHHcCCEEEEEe
Confidence 45555544 353 2222344556788888887655434444445554432 568889999999998874
No 258
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=32.84 E-value=1.6e+02 Score=22.32 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=29.1
Q ss_pred cChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 90 GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 90 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.-..+.+.++++..++.-++.+-+|.+..+ ...+...|++.||.+..+.
T Consensus 159 n~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~--~~~l~~~~~~~gi~v~a~s 207 (298)
T 3up8_A 159 NFNTTQMEEAARLSDAPIATNQVEYHPYLD--QTKVLQTARRLGMSLTSYY 207 (298)
T ss_dssp SCCHHHHHHHHHHCSSCEEEEEEECBTTBC--CHHHHHHHHHHTCEEEEEC
T ss_pred CCCHHHHHHHHHhCCCCceEEEEecccccc--cHHHHHHHHHCCCEEEEEC
Confidence 334566666666655543444445554433 2457778888888887764
No 259
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=32.46 E-value=1.5e+02 Score=21.98 Aligned_cols=71 Identities=6% Similarity=0.029 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++. +.+..+. ..+++.|++....... ..+ +.+.+.|++++.+
T Consensus 76 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~-----~~~-~~l~~~~iPvV~~ 148 (332)
T 2o20_A 76 TYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFL-SKQVDGIVYMGSSLDE-----KIR-TSLKNSRTPVVLV 148 (332)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECSSCCCH-----HHH-HHHHHHCCCEEEE
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHH-hCCCCEEEEeCCCCCH-----HHH-HHHHhCCCCEEEE
Confidence 47788888999999999999888763 332 2344444 4689988775432111 122 2334458999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 149 ~~~ 151 (332)
T 2o20_A 149 GTI 151 (332)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 260
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=32.39 E-value=1.4e+02 Score=21.40 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|+.......... ..+ +.+.+.|++++.+
T Consensus 14 ~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~---~~~-~~~~~~~iPvV~i 88 (271)
T 2dri_A 14 PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT-VRGTKILLINPTDSDAVG---NAV-KMANQANIPVITL 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHT-TTTEEEEEECCSSTTTTH---HHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHH---HHH-HHHHHCCCcEEEe
Confidence 48888889999999999999888753 3332 233333 457888877532211111 122 3344569999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 89 ~~~ 91 (271)
T 2dri_A 89 DRQ 91 (271)
T ss_dssp SSC
T ss_pred cCC
Confidence 653
No 261
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=32.24 E-value=1.4e+02 Score=21.60 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKE 102 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 102 (156)
..+.++=+.|++.|+++.|....+......+.+.
T Consensus 133 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~ 166 (261)
T 1yns_A 133 ADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGH 166 (261)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHT
T ss_pred cCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHh
Confidence 3455556677788999998877666655555553
No 262
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=32.14 E-value=1.4e+02 Score=21.56 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhCCC-eEEEEEc--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 65 RFLLQCLEDLDINLRKLNS-RLFVIRG--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~-~L~v~~g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
.|+.+-+..+++.++++|. .+.+... ++.. .+..+. ..+++.|++.... .... ...+ +.+.+.|++++.
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~-~~~~--~~~~-~~~~~~~iPvV~ 89 (309)
T 2fvy_A 15 NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLVD-PAAA--GTVI-EKARGQNVPVVF 89 (309)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSS-GGGH--HHHH-HHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC-cchh--HHHH-HHHHHCCCcEEE
Confidence 4778888999999999997 8887754 3332 344444 4589988875422 2111 1122 344557999998
Q ss_pred ecCC
Q psy6650 139 RVSH 142 (156)
Q Consensus 139 ~~~~ 142 (156)
++..
T Consensus 90 ~~~~ 93 (309)
T 2fvy_A 90 FNKE 93 (309)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 8753
No 263
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=32.06 E-value=1.2e+02 Score=21.70 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=38.4
Q ss_pred HHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEccc-C-----------CchhHHHHHHHHHHHHhCCceEEEecCCee
Q psy6650 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEED-P-----------EPFGKVRDQNIMTLCRELNIEVIARVSHTL 144 (156)
Q Consensus 77 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~-~-----------~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L 144 (156)
+|++.|+.+.+..|.+...++ .+.+.+.+.+++... + .+.......++.+.+++.++.+..+....+
T Consensus 41 ~l~~~G~~~~iaTGR~~~~~~-~~~~l~~~~~i~~nGa~i~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~ 119 (268)
T 3r4c_A 41 KVHDSGIKIVIATGRAASDLH-EIDAVPYDGVIALNGAECVLRDGSVIRKVAIPAQDFRKSMELAREFDFAVALELNEGV 119 (268)
T ss_dssp HHHHTTCEEEEECSSCTTCCG-GGTTSCCCEEEEGGGTEEEETTSCEEEECCCCHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred HHHHCCCEEEEEcCCChHHhH-HHHhcCCCcEEEeCCcEEEEcCCeEEEEecCCHHHHHHHHHHHHHcCcEEEEEECCEE
Confidence 345679999999998866553 334444332221100 0 112233445566677777888877766655
Q ss_pred e
Q psy6650 145 Y 145 (156)
Q Consensus 145 ~ 145 (156)
+
T Consensus 120 ~ 120 (268)
T 3r4c_A 120 F 120 (268)
T ss_dssp E
T ss_pred E
Confidence 4
No 264
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=31.83 E-value=1.2e+02 Score=23.97 Aligned_cols=116 Identities=9% Similarity=-0.029 Sum_probs=59.1
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcCCcceEEE--EeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhC-CCeEEEEEc-
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVF--ILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKL-NSRLFVIRG- 90 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vf--i~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~-g~~L~v~~g- 90 (156)
..-|.|--- - -+|+.|....++..-++... +...+.+.. ..... -..+.+|.+.+-.. +-+ +..|
T Consensus 229 ~~RI~~~G~--~-~~~~~l~~~le~~Ga~VV~~~~~~g~r~~~~-~v~~~-----~dpl~~lA~~yl~~~~c~--~~~~p 297 (385)
T 3o3m_B 229 GKKVLLTGI--L-ADSKDILDILEDNNISVVADDLAQETRQFRT-DVPAG-----DDALERLARQWSNIEGCS--LAYDP 297 (385)
T ss_dssp SEEEEEEES--C-CCCHHHHHHHHHTTEEEEEEEETTTGGGTSS-CCCCC-----SCHHHHHHHHHHHCCSCT--TSCCT
T ss_pred CceEEEECC--C-CCcHHHHHHHHHCCCEEEEECcccccccccc-CCCCC-----ccHHHHHHHHHhcCCCCc--cccCc
Confidence 345777663 2 46889988887543332232 222122111 00000 01345555555432 111 1122
Q ss_pred --ChHHHHHHHHHHcCcCeEEE-c-ccCCchhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 91 --QPADILPKLFKEWKTTCLTF-E-EDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 91 --~~~~~l~~l~~~~~~~~V~~-~-~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
...+.+.+++++++++.|+. . ....++... ...+++.+++.||++-.++..
T Consensus 298 ~~~R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~-~~~~~~~~~~~giP~l~ie~D 352 (385)
T 3o3m_B 298 KKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYD-YPLVRKDIEDSGIPTLYVEID 352 (385)
T ss_dssp TCTHHHHHHHHHHHTTCCEEEEEEETTCHHHHHH-HHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeccCCCCccHhh-HHHHHHHHHHCCCCEEEEEec
Confidence 34567778888999987743 3 333333333 345667777778888777643
No 265
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=31.55 E-value=1.2e+02 Score=20.47 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH------cCc----CeEEEccc
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKE------WKT----TCLTFEED 113 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~------~~~----~~V~~~~~ 113 (156)
..+.++=+.|++ |.++.++.+.+...+..+.+. .++ +.++...+
T Consensus 92 ~~~~~~l~~l~~-g~~~~i~t~~~~~~~~~~~~~l~~~~~~~l~~~f~~~~~~~~ 145 (211)
T 2i6x_A 92 AEKFDYIDSLRP-DYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYASCQ 145 (211)
T ss_dssp HHHHHHHHHHTT-TSEEEEEECCCHHHHHHHTSTTSSTTCCCGGGGSSEEEEHHH
T ss_pred hHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHhhhccccccCHHHHcCeEEeecc
Confidence 455666667777 999999988877777777766 553 56666543
No 266
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=31.34 E-value=1e+02 Score=19.81 Aligned_cols=42 Identities=7% Similarity=0.132 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEE--cChHHHHHHHHHHcCcCe
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIR--GQPADILPKLFKEWKTTC 107 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~--g~~~~~l~~l~~~~~~~~ 107 (156)
-....|.++.+++...|+.++.+. .++.+.+.++++++++.-
T Consensus 45 ~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~ 88 (153)
T 2l5o_A 45 SEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPF 88 (153)
T ss_dssp HHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCc
Confidence 345678888888888888877766 567788888999888763
No 267
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=31.04 E-value=1.7e+02 Score=22.28 Aligned_cols=60 Identities=8% Similarity=0.186 Sum_probs=36.6
Q ss_pred HhCCCeEEE-EEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 79 RKLNSRLFV-IRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 79 ~~~g~~L~v-~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.|.-=.+ +..-..+.+.++.+..++.-.+.+-+|.+..++ ..+...|++.||.+..+.
T Consensus 158 ~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~s 218 (322)
T 1mi3_A 158 VAAGKIKSIGVSNFPGALLLDLLRGATIKPAVLQVEHHPYLQQ--PKLIEFAQKAGVTITAYS 218 (322)
T ss_dssp HHTTSEEEEEEESCCHHHHHHHHHHCSSCCCEEEEECBTTBCC--HHHHHHHHHTTCEEEEEC
T ss_pred HHcCCcCEEEEcCCCHHHHHHHHHhCCCCceEeecccCcCcCc--HHHHHHHHHcCCEEEEEC
Confidence 344543232 344556788888887554333334445444332 468889999999998774
No 268
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=30.99 E-value=61 Score=21.07 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeE
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL 108 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V 108 (156)
-....|.++.++++..|+.++.+..+..+.+.+++++++++--
T Consensus 41 ~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~ 83 (151)
T 3raz_A 41 KEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYP 83 (151)
T ss_dssp HHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCc
Confidence 3456678888888777888888888878888888888877643
No 269
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=30.70 E-value=82 Score=24.25 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=37.9
Q ss_pred HHHHHH-HHHHHHHHHh--CCCeEEEEEc-ChHHHHHHHHHHc---CcCeEEEcccC
Q psy6650 65 RFLLQC-LEDLDINLRK--LNSRLFVIRG-QPADILPKLFKEW---KTTCLTFEEDP 114 (156)
Q Consensus 65 ~Fl~~s-L~~L~~~L~~--~g~~L~v~~g-~~~~~l~~l~~~~---~~~~V~~~~~~ 114 (156)
.-|.+. +..+++-|+. .|++.+...| +..+++-.|+.+. +...++++.+.
T Consensus 97 e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~Dk 153 (290)
T 1exn_A 97 KALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDG 153 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCG
T ss_pred hhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 344556 7778888888 9999998888 8888888888764 55566666654
No 270
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=30.59 E-value=63 Score=22.87 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCC
Q psy6650 119 KVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSR 155 (156)
Q Consensus 119 ~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~ 155 (156)
...-+++++.|.+.||.+.---+.++.+ .+|..++|
T Consensus 87 ~~~L~~ik~sL~~~gI~l~~~fs~tiHD-R~I~~dnG 122 (163)
T 4a5z_A 87 SRGLQEIEESLRSHGVLLEVQYSSSIHD-REIRFNNG 122 (163)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCC-CEEEETTS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCccc-eEEEecCC
Confidence 4455778888888999998777777755 57776665
No 271
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3
Probab=30.37 E-value=1.2e+02 Score=20.03 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccCCchhHHHHHHHHHHHHhCCce-EEEecCC
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDPEPFGKVRDQNIMTLCRELNIE-VIARVSH 142 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~-~~~~~~~ 142 (156)
+.+.++=+.|++.|.++.+..+.+. .+..+.+..++ +.++...+.... +-.-..+...++..|+. +..+.|+
T Consensus 85 ~~~~~~l~~l~~~g~~~~i~t~~~~-~~~~~l~~~~~~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~~~~~~~~~iGD~ 161 (190)
T 2fi1_A 85 EGVSDLLEDISNQGGRHFLVSHRND-QVLEILEKTSIAAYFTEVVTSSSGFKR-KPNPESMLYLREKYQISSGLVIGDR 161 (190)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHTTCGGGEEEEECGGGCCCC-TTSCHHHHHHHHHTTCSSEEEEESS
T ss_pred cCHHHHHHHHHHCCCcEEEEECCcH-HHHHHHHHcCCHhheeeeeeccccCCC-CCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 3455666677788999888876653 45566666664 345554433211 00112334455555663 4444443
No 272
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=30.33 E-value=1.2e+02 Score=20.26 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhCCC------eEEEEEcCh--HHHHHHHHHHcCcCe
Q psy6650 65 RFLLQCLEDLDINLRKLNS------RLFVIRGQP--ADILPKLFKEWKTTC 107 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~------~L~v~~g~~--~~~l~~l~~~~~~~~ 107 (156)
.-....|.++.+++...|+ .++.+.-+. .+.+.++++++++.-
T Consensus 75 ~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~ 125 (183)
T 3lwa_A 75 RSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDY 125 (183)
T ss_dssp HHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 3456789999999999988 877776544 788889999887753
No 273
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=30.18 E-value=95 Score=20.67 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=23.5
Q ss_pred EEEcChHHHHHHHHHH---cCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 87 VIRGQPADILPKLFKE---WKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 87 v~~g~~~~~l~~l~~~---~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
++..+| ++|..++.+ .|+..|..-. ..++++|-.++... .+.|+.+.++.+
T Consensus 7 vfssdp-eilkeivreikrqgvrvvllys--dqdekrrrerleef-ekqgvdvrtved 60 (162)
T 2l82_A 7 VFSSDP-EILKEIVREIKRQGVRVVLLYS--DQDEKRRRERLEEF-EKQGVDVRTVED 60 (162)
T ss_dssp EEESCH-HHHHHHHHHHHHTTCEEEEEEC--CSCHHHHHHHHHHH-HTTTCEEEECCS
T ss_pred EecCCH-HHHHHHHHHHHhCCeEEEEEec--CchHHHHHHHHHHH-HHcCCceeeecc
Confidence 333443 455555443 3444442211 13355555555433 445776666654
No 274
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=30.18 E-value=1.1e+02 Score=23.55 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=30.4
Q ss_pred cChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 90 GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 90 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.-..+.+.++.+..+++.+ +-+|.+..++.+..+...|++.||.+..+.
T Consensus 157 n~~~~~l~~~~~~~~~~~~--Q~~~~~~~~~~e~~l~~~~~~~gi~v~a~s 205 (337)
T 3v0s_A 157 EASPDTIRRAHAVHPVTAL--QIEYSLWTRDIEDEIVPLCRQLGIGIVPYS 205 (337)
T ss_dssp SCCHHHHHHHHHHSCCCEE--EEECBTTBCGGGTTHHHHHHHHTCEEEEES
T ss_pred CCCHHHHHHHhccCCceEE--EeeccccccchhHHHHHHHHHcCceEEEec
Confidence 3455666667666555433 334445444434567788888899888764
No 275
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=30.17 E-value=1.3e+02 Score=20.29 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEccc
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEED 113 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~ 113 (156)
+.++-+.|++.|..+.++.+.+...+..+.+..++ +.++...+
T Consensus 94 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (225)
T 3d6j_A 94 TLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGED 140 (225)
T ss_dssp HHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSCTTCCSEEECGGG
T ss_pred HHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCchhheeeeeehhh
Confidence 44445556777888888888777777777777664 34555433
No 276
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=30.08 E-value=71 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcCh
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQP 92 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~ 92 (156)
.-..+.|.+++++|.+.|+.|.+-..++
T Consensus 84 ~~Q~~~L~~ik~sL~~~gI~l~~~fs~t 111 (163)
T 4a5z_A 84 VQQSRGLQEIEESLRSHGVLLEVQYSSS 111 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4556899999999999999999887543
No 277
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=30.01 E-value=82 Score=24.45 Aligned_cols=42 Identities=5% Similarity=-0.069 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
.+..+++-|+..|++.+...|+.+..+..++++ +....+++.
T Consensus 130 ~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~-g~~~~I~S~ 171 (336)
T 1rxw_A 130 IVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAK-GDVEYTGSQ 171 (336)
T ss_dssp HHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHT-TSSSEEECS
T ss_pred HHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHc-CCeeEEEcC
Confidence 467788889999999999999877777777744 443333444
No 278
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=29.94 E-value=1.1e+02 Score=21.64 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=24.2
Q ss_pred HHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 77 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
+|++.|+.+.+..|.+...+..+.+..+..
T Consensus 31 ~l~~~G~~v~i~TGR~~~~~~~~~~~l~~~ 60 (231)
T 1wr8_A 31 RAESLGIPIMLVTGNTVQFAEAASILIGTS 60 (231)
T ss_dssp HHHHTTCCEEEECSSCHHHHHHHHHHHTCC
T ss_pred HHHHCCCEEEEEcCCChhHHHHHHHHcCCC
Confidence 455679999999999988888888876654
No 279
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=29.80 E-value=1.4e+02 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCceEEEe
Q psy6650 123 QNIMTLCRELNIEVIAR 139 (156)
Q Consensus 123 ~~v~~~l~~~~i~~~~~ 139 (156)
..+...|++.||.+..+
T Consensus 207 ~~l~~~~~~~gi~v~a~ 223 (310)
T 3b3e_A 207 KELRDYCKGQGIQLEAW 223 (310)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 34666777777777665
No 280
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=29.76 E-value=1.6e+02 Score=21.97 Aligned_cols=49 Identities=6% Similarity=0.006 Sum_probs=27.4
Q ss_pred cChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 90 GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 90 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.-..+.+.++++..++.-.+.+-+|.+..++ ..+...|++.||.+..+.
T Consensus 140 n~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~s 188 (278)
T 1hw6_A 140 NHLVPHLERIVAATGVVPAVNQIELHPAYQQ--REITDWAAAHDVKIESWG 188 (278)
T ss_dssp SCCHHHHHHHHHHHSCCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred CCCHHHHHHHHHhcCCCceeEEEEeCcccCC--HHHHHHHHHcCCEEEEec
Confidence 3345566666665444212223334343332 457788888898887764
No 281
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=29.67 E-value=1.4e+02 Score=20.47 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
.+.++-+.|++.|.++.++.+.+...+..+.+..++ +.++...+.
T Consensus 103 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 151 (233)
T 3umb_A 103 ENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSGLFDHVLSVDAV 151 (233)
T ss_dssp THHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCTTTCSEEEEGGGT
T ss_pred CHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcHhhcCEEEEeccc
Confidence 455666778889999999998888877777877664 566666554
No 282
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=29.64 E-value=79 Score=20.51 Aligned_cols=59 Identities=5% Similarity=0.039 Sum_probs=39.8
Q ss_pred cceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEc-------ChHHHHHHHHHHcCcCe
Q psy6650 42 TFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRG-------QPADILPKLFKEWKTTC 107 (156)
Q Consensus 42 ~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g-------~~~~~l~~l~~~~~~~~ 107 (156)
+++.|+++.++ + + .....+...|.++.+++...|+.++.+.- +..+.+.+++++++++-
T Consensus 31 k~vlv~F~a~~-C-----~-~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
T 3lor_A 31 KVVVVEVFQML-C-----P-GCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKF 96 (160)
T ss_dssp SEEEEEEECTT-C-----H-HHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCS
T ss_pred CEEEEEEEcCC-C-----c-chhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCC
Confidence 44456666542 1 1 23333567888888888888888777763 67788889999987764
No 283
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=29.59 E-value=1.9e+02 Score=22.93 Aligned_cols=65 Identities=9% Similarity=0.274 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCC-CeEEEEEc-ChH------HHHHHHHHHcCcCeEEEcc-cCCchhHHHHHHHHHHHHhCCceE
Q psy6650 71 LEDLDINLRKLN-SRLFVIRG-QPA------DILPKLFKEWKTTCLTFEE-DPEPFGKVRDQNIMTLCRELNIEV 136 (156)
Q Consensus 71 L~~L~~~L~~~g-~~L~v~~g-~~~------~~l~~l~~~~~~~~V~~~~-~~~~~~~~~d~~v~~~l~~~~i~~ 136 (156)
+.+|.+.++++| ....|+.+ ... +.+.+..++.++..+.+.. +..|... ...++.+.+++.++.+
T Consensus 31 l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~-~v~~~~~~~~~~~~D~ 104 (407)
T 1vlj_A 31 IPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLS-KVHEAVEVAKKEKVEA 104 (407)
T ss_dssp GGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHH-HHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHH-HHHHHHHHHHhcCCCE
Confidence 344555566666 55666665 322 2233333444665555543 3333333 3334445555555543
No 284
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=29.43 E-value=1.1e+02 Score=19.30 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 97 PKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 97 ~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
.+.+++-.+.-|+...+..+.... .+...|...+|+++.+.+
T Consensus 28 ~kai~~gka~lViiA~D~~~~~~~---~i~~~c~~~~vp~~~~~s 69 (101)
T 3v7q_A 28 IKEIRNARAKLVLLTEDASSNTAK---KVTDKCNYYKVPYKKVES 69 (101)
T ss_dssp HHHHHTTCCSEEEEETTSCHHHHH---HHHHHHHHTTCCEEEESC
T ss_pred HHHHhcCceeEEEEeccccccchh---hhcccccccCCCeeeech
Confidence 345555677777777777766433 345667777788776643
No 285
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=29.40 E-value=1.6e+02 Score=22.00 Aligned_cols=17 Identities=18% Similarity=-0.001 Sum_probs=12.0
Q ss_pred HHHHHHHhCCceEEEec
Q psy6650 124 NIMTLCRELNIEVIARV 140 (156)
Q Consensus 124 ~v~~~l~~~~i~~~~~~ 140 (156)
.+...|++.||.+..+.
T Consensus 180 ~l~~~~~~~gi~v~a~s 196 (283)
T 2wzm_A 180 ALREVNAGYNIVTEAYG 196 (283)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHCCCEEEEec
Confidence 46677777788777654
No 286
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=29.40 E-value=1.2e+02 Score=20.56 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc--------ChHHHHHHHHHHcCcC
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG--------QPADILPKLFKEWKTT 106 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~ 106 (156)
-....|.++.+++...|+.++.+.. +..+.+.+++++++++
T Consensus 63 ~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~ 111 (196)
T 2ywi_A 63 HVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYP 111 (196)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCC
Confidence 4457788999999888999888875 4567778888877665
No 287
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Probab=29.29 E-value=1.4e+02 Score=21.49 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCC--eEEEEEcChHHHHHHHHHHcCc----CeEEEcc
Q psy6650 68 LQCLEDLDINLRKLNS--RLFVIRGQPADILPKLFKEWKT----TCLTFEE 112 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~ 112 (156)
...+.++=+.|++.|. ++.++.+.+...+..+.+..++ +.+++..
T Consensus 144 ~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~~~fd~v~~~~ 194 (282)
T 3nuq_A 144 DIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGLTYCD 194 (282)
T ss_dssp CHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCTTSCSEEECCC
T ss_pred ChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCcccccceEEEec
Confidence 4456677778888999 9999988877777777777655 4555443
No 288
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=29.25 E-value=1.5e+02 Score=22.69 Aligned_cols=67 Identities=9% Similarity=0.143 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCe-EEEEEcChHHHHHHHHHHcCcC--eEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 69 QCLEDLDINLRKLNSR-LFVIRGQPADILPKLFKEWKTT--CLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~~--~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
++|.+|. +.|.- -+=+..-..+.+.++.+..++. -++.+-+|.+..++ ..+...|++.||.+..+..
T Consensus 152 ~ale~l~----~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~sp 221 (326)
T 3buv_A 152 EAMEACK----DAGLVKSLGVSNFNRRQLELILNKPGLKHKPVSNQVECHPYFTQ--PKLLKFCQQHDIVITAYSP 221 (326)
T ss_dssp HHHHHHH----HTTSEEEEEEESCCHHHHHHHHTCTTCCSCCCEEEEECBTTBCC--HHHHHHHHHTTCEEEEEST
T ss_pred HHHHHHH----HcCCccEEEEeCCCHHHHHHHHHhCCCCCCCeeeeeecccccCc--HHHHHHHHHcCCEEEEecc
Confidence 4444444 44533 2223455567888888765554 23444455554432 4688899999999988753
No 289
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=29.24 E-value=69 Score=21.38 Aligned_cols=41 Identities=10% Similarity=0.269 Sum_probs=21.8
Q ss_pred HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 95 ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 95 ~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.++....+.+.||+-- |.. ..+.+.+.+++.||+....+
T Consensus 98 ~l~~~~~~~~~~~vy~CG---P~~--Mm~av~~~l~~~~~~~~~~~ 138 (142)
T 3lyu_A 98 KVRELLESEDWDLVFMVG---PVG--DQKQVFEVVKEYGVPMLEHH 138 (142)
T ss_dssp HHHHHHHSSCCSEEEEES---CHH--HHHHHHHHHHHHTCCBC---
T ss_pred HHHHhcccCCCCEEEEEC---CHH--HHHHHHHHHHHcCCchhhhc
Confidence 444444444556677653 332 23566777777788765443
No 290
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=29.13 E-value=1e+02 Score=23.75 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=33.3
Q ss_pred EEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 88 IRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 88 ~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+..-..+.+.++++..++.-++.+-+|.+..++ ..+...|++.||.+..+.
T Consensus 177 vSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 227 (335)
T 3h7u_A 177 VSNFSTKKLADLLELARVPPAVNQVECHPSWRQ--TKLQEFCKSKGVHLSAYS 227 (335)
T ss_dssp EESCCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHHTCEEEEES
T ss_pred ecCCCHHHHHHHHHhCCCCeEEEecccccccCC--HHHHHHHHHCCCEEEEec
Confidence 344456778888877655433444445554433 467889999999998874
No 291
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=29.05 E-value=1.7e+02 Score=21.45 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEcC----hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCee
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQ----PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTL 144 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L 144 (156)
-+..+++.|++.|+++....-. ..+.+.+|.. +.+.||+..+..... ..+.+.+...+.++.+..|++..+
T Consensus 157 r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~--~~dai~~~~D~~a~g--~~~~l~~~~~~~~i~vig~d~~~~ 231 (302)
T 2qh8_A 157 LMELLKLSAAKHGIKLVEATALKSADVQSATQAIAE--KSDVIYALIDNTVAS--AIEGMIVAANQAKTPVFGAATSYV 231 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGG--GCSEEEECSCHHHHT--THHHHHHHHHHTTCCEEESSHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhc--cCCEEEECCcHhHHH--HHHHHHHHHHHcCCCEEECCHHHH
Confidence 3456667788889987654322 2234445543 689999876542221 123344444446899988876543
No 292
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=29.02 E-value=38 Score=22.33 Aligned_cols=45 Identities=16% Similarity=-0.044 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEE
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~ 110 (156)
-....|.++.+++...|+.++.+..+..+.+.++++++++.-.+.
T Consensus 54 ~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~ 98 (160)
T 1xvw_A 54 GELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLL 98 (160)
T ss_dssp HHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEE
T ss_pred HHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEE
Confidence 445677788888877788888888888888999999988764333
No 293
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=28.99 E-value=69 Score=20.24 Aligned_cols=51 Identities=4% Similarity=-0.062 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeec
Q psy6650 93 ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYD 146 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~ 146 (156)
.....++.++.++.-...+-.-.+.. .+.+.+......++...+++..+-.
T Consensus 36 C~~ak~~L~~~gi~~~~~dI~~~~~~---~~~l~~~~g~~tvP~ifi~g~~iGG 86 (109)
T 3ipz_A 36 SNTVVQILKNLNVPFEDVNILENEML---RQGLKEYSNWPTFPQLYIGGEFFGG 86 (109)
T ss_dssp HHHHHHHHHHTTCCCEEEEGGGCHHH---HHHHHHHHTCSSSCEEEETTEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEECCCCHHH---HHHHHHHHCCCCCCeEEECCEEEeC
Confidence 34566777777777555543322222 1223333233467777777665443
No 294
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=28.87 E-value=1.6e+02 Score=21.14 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhC-CCeEEEEE-----cChHHH---HHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceE
Q psy6650 66 FLLQCLEDLDINLRKL-NSRLFVIR-----GQPADI---LPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~-g~~L~v~~-----g~~~~~---l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~ 136 (156)
|+.+-+..+++.++++ |..+.+.. +++... +..+ ...+++.|++......... ...+.+.+.|+++
T Consensus 23 ~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiii~~~~~~~~~----~~~~~~~~~~iPv 97 (304)
T 3gbv_A 23 YWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAV-IEEQPDGVMFAPTVPQYTK----GFTDALNELGIPY 97 (304)
T ss_dssp HHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHH-HTTCCSEEEECCSSGGGTH----HHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHH-HhcCCCEEEECCCChHHHH----HHHHHHHHCCCeE
Confidence 7778888888999988 77777653 244332 3333 3468999887643222111 1223344569999
Q ss_pred EEecCC
Q psy6650 137 IARVSH 142 (156)
Q Consensus 137 ~~~~~~ 142 (156)
+.++..
T Consensus 98 V~~~~~ 103 (304)
T 3gbv_A 98 IYIDSQ 103 (304)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 988753
No 295
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=28.86 E-value=1.5e+02 Score=21.02 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=34.1
Q ss_pred CCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 81 ~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|..|++-.....-....|+ +.+|..|++-..+..... ..+.|++.||++..+.
T Consensus 122 ~g~tlYvTlEPC~mCa~aIi-~agI~rVVy~~~~~~~~~-----~~~~L~~aGIeV~~~~ 175 (184)
T 2hvw_A 122 NNTEIYVTHFPCINCTKALL-QAGVKKITYNTAYRIHPF-----AIELMTQKEVEYVQHD 175 (184)
T ss_dssp TTEEEEEEECCCHHHHHHHH-HHTEEEEEEEECCSCCHH-----HHHHHHHHTCEEEECC
T ss_pred eeEEEEECCCCHHHHHHHHH-HHCCCeEEEEecCCCCHH-----HHHHHHHCCCEEEEec
Confidence 36677766554455554444 458999988766533321 1466777899998764
No 296
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=28.77 E-value=1.1e+02 Score=19.19 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 98 KLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 98 ~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
+.+++-.+.-|+...+..+... ..+...|...+|+++.+.+
T Consensus 28 kai~~gka~lViiA~D~~~~~~---~~i~~~c~~~~ip~~~~~s 68 (101)
T 3on1_A 28 KAVQNGQVTLVILSSDAGIHTK---KKLLDKCGSYQIPVKVVGN 68 (101)
T ss_dssp HHHHTTCCSEEEEETTSCHHHH---HHHHHHHHHHTCCEEEESC
T ss_pred HHHHcCCCcEEEEeCCCCHHHH---HHHHHHHHHcCCCEEEeCC
Confidence 3445556777777777766532 3455666666777765543
No 297
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=28.73 E-value=1.6e+02 Score=21.14 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCeEEEEEcChHH-HHHHH---HHHcCcCeEEEcccC-CchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 73 DLDINLRKLNSRLFVIRGQPAD-ILPKL---FKEWKTTCLTFEEDP-EPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~-~l~~l---~~~~~~~~V~~~~~~-~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
+|.+.|+++|+.=+++.|-..+ ++..- +...+...++..+.. +......+..+...-...|+.+.+.+-
T Consensus 133 ~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~~a~~~Gy~v~vv~Da~~~~~~~~h~~aL~~m~~~~G~~i~ts~~ 206 (211)
T 3o94_A 133 DLDIRLRERRVSTVILTGVLTDISVLHTAIDAYNLGYDIEIVKPAVASIWPENHQFALGHFKNTLGAKLVDENL 206 (211)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTSCCEEECTTS
T ss_pred hHHHHHHhCCCCeEEEEeeccChHHHHHHHHHHHCCCEEEEechhhcCCCHHHHHHHHHHHHHHCCcEEechhh
Confidence 5667777777776666653221 11111 112344444333332 233334444444333225776655443
No 298
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=28.71 E-value=27 Score=25.45 Aligned_cols=46 Identities=7% Similarity=0.015 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 94 DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 94 ~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+.+.++++++++..+..+-.+.... +..++..+.+++.|++...+.
T Consensus 66 ~~~~~~l~~~gl~i~~~~~~~~~~~-~~~~~~i~~A~~lGa~~v~~~ 111 (262)
T 3p6l_A 66 KEIKELAASKGIKIVGTGVYVAEKS-SDWEKMFKFAKAMDLEFITCE 111 (262)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCSST-THHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCeEEEEeccCCccH-HHHHHHHHHHHHcCCCEEEec
Confidence 4566777777876666665543222 222334445555677666554
No 299
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=28.71 E-value=66 Score=24.41 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=23.4
Q ss_pred CCCeEEEEEcChHHHHHHHHHHcCcCe
Q psy6650 81 LNSRLFVIRGQPADILPKLFKEWKTTC 107 (156)
Q Consensus 81 ~g~~L~v~~g~~~~~l~~l~~~~~~~~ 107 (156)
.|+++.+..|++.+.+..++++.+++.
T Consensus 69 ~g~~v~~atGr~~~~l~~~~~~~gld~ 95 (335)
T 3n28_A 69 GRYEVALMDGELTSEHETILKALELDY 95 (335)
T ss_dssp TTEEEEEESSCCCHHHHHHHHHHTCEE
T ss_pred ccceEEEecCCchHHHHHHHHHcCCCE
Confidence 388999999999889999999988766
No 300
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=28.63 E-value=1.7e+02 Score=22.22 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 92 PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 92 ~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
..+.+.++.+..++.-++.+-+|.+..++ ..+...|++.||.+..+.
T Consensus 162 ~~~~l~~~~~~~~~~p~v~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 208 (296)
T 1mzr_A 162 QIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWS 208 (296)
T ss_dssp CHHHHHHHHHHHSCCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred CHHHHHHHHHhcCCCceEEeeecccccCC--HHHHHHHHHCCCeEEEec
Confidence 34555555554343222333334443322 357788888888887764
No 301
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=28.59 E-value=63 Score=21.41 Aligned_cols=13 Identities=0% Similarity=-0.212 Sum_probs=7.7
Q ss_pred CCceEEEecCCee
Q psy6650 132 LNIEVIARVSHTL 144 (156)
Q Consensus 132 ~~i~~~~~~~~~L 144 (156)
..++...+++..+
T Consensus 69 ~tVP~IfI~G~~I 81 (127)
T 3l4n_A 69 GTVPNLLVNGVSR 81 (127)
T ss_dssp CSSCEEEETTEEC
T ss_pred CCcceEEECCEEE
Confidence 3567666666543
No 302
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.58 E-value=96 Score=20.03 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=25.9
Q ss_pred hCCCeEEEEEcChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 80 KLNSRLFVIRGQPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 80 ~~g~~L~v~~g~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+.+..+.+..-+..+ --..+++..|+..++.-.+- ...|.+.......+.|.++.++.
T Consensus 48 kynativvvvvddkewaekairfvkslgaqvliiiydq---dqnrleefsrevrrrgfevrtvt 108 (134)
T 2l69_A 48 KYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQ---DQNRLEEFSREVRRRGFEVRTVT 108 (134)
T ss_dssp CCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECS---CHHHHHHHHHHHHHTTCCEEEES
T ss_pred HhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeC---chhHHHHHHHHHHhcCceEEEec
Confidence 345555555443322 22345566666554332211 12233333344445676666553
No 303
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=28.55 E-value=95 Score=22.34 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChH-HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPA-DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
|+.+-+..+++.+++.|..+.+...+.. +...+ ++++.|++...... . ..+ +.+.+.|++++.++.
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~----~~vdgiI~~~~~~~-~----~~~-~~l~~~~iPvV~~~~ 88 (277)
T 3cs3_A 22 FYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE----KMVDGAIILDWTFP-T----KEI-EKFAERGHSIVVLDR 88 (277)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT----TTCSEEEEECTTSC-H----HHH-HHHHHTTCEEEESSS
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh----ccccEEEEecCCCC-H----HHH-HHHHhcCCCEEEEec
Confidence 6677788888899999999888764321 11111 17888876532211 1 222 234457899988764
No 304
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=28.43 E-value=1.9e+02 Score=21.73 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=39.7
Q ss_pred eEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHH-HhCCCeEEEEEcChHH--HHHHHHHHcCcC
Q psy6650 44 RCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINL-RKLNSRLFVIRGQPAD--ILPKLFKEWKTT 106 (156)
Q Consensus 44 i~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~g~~L~v~~g~~~~--~l~~l~~~~~~~ 106 (156)
-.+|+.|.... ++|.+....+.+-..++-+.| ++.|..++|+.+++.. .+..+.+.+++-
T Consensus 48 ~~iy~~D~~~~---PyG~~s~~~i~~~~~~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iP 110 (285)
T 2jfn_A 48 HYIYAFDNVAF---PYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFP 110 (285)
T ss_dssp EEEEEECTTTC---CTTTSCHHHHHHHHHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSC
T ss_pred CeEEeeccCCC---CCccCCHHHHHHHHHHHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCC
Confidence 35788886433 456665556665555555554 5589999999988876 567776666543
No 305
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=28.38 E-value=1.7e+02 Score=21.86 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCceEEEec
Q psy6650 123 QNIMTLCRELNIEVIARV 140 (156)
Q Consensus 123 ~~v~~~l~~~~i~~~~~~ 140 (156)
..+...|++.||.+..+.
T Consensus 185 ~~l~~~~~~~gi~v~a~s 202 (288)
T 4f40_A 185 ADLRAFCDAKQIKVEAWS 202 (288)
T ss_dssp HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 457788888888887764
No 306
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.36 E-value=1.4e+02 Score=20.36 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCC--eEEEEEcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 69 QCLEDLDINLRKLNS--RLFVIRGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
+.+.++-+.|++.|. -.+++-|.+...-...+++.+++.||....
T Consensus 84 ~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~ 130 (161)
T 2yxb_A 84 HLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGT 130 (161)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCCC
Confidence 455566666666653 233445665554445678899998886543
No 307
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=28.34 E-value=1.3e+02 Score=23.19 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 93 ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.+.++++...++. .+-+|.+..+..+..+...|++.||.+..+.
T Consensus 180 ~~~l~~~~~~~~~~~--~Q~~~nl~~~~~e~~l~~~~~~~gi~v~a~s 225 (348)
T 3n2t_A 180 PEQMDIFREVAPLAT--IQPPLNLFERTIEKDILPYAEKHNAVVLAYG 225 (348)
T ss_dssp HHHHHHHHHHSCCCE--EECBCBTTBCGGGGTHHHHHHHHTCEEEEBC
T ss_pred HHHHHHHHHhCCccE--EEeeecCccCchHHHHHHHHHHcCCeEEEee
Confidence 344444444433322 2334444444334567788888899888764
No 308
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=28.32 E-value=1.6e+02 Score=20.90 Aligned_cols=68 Identities=7% Similarity=-0.005 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCeEEEEEcC--------------h---------HHHHHHHHHHcCcCeEEEcccCCc----hh-----
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQ--------------P---------ADILPKLFKEWKTTCLTFEEDPEP----FG----- 118 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~--------------~---------~~~l~~l~~~~~~~~V~~~~~~~~----~~----- 118 (156)
+.++++.+++.|+.+..+... + .....+++++.++..|.+.....+ .+
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~ 121 (260)
T 1k77_A 42 TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAV 121 (260)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHH
Confidence 577888999999998865421 1 112345677889999977533321 11
Q ss_pred -HHHHHHHHHHHHhCCceEEE
Q psy6650 119 -KVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 119 -~~~d~~v~~~l~~~~i~~~~ 138 (156)
.+..+++.+.+++.||++..
T Consensus 122 ~~~~l~~l~~~a~~~gv~l~~ 142 (260)
T 1k77_A 122 FIDNIRYAADRFAPHGKRILV 142 (260)
T ss_dssp HHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEE
Confidence 12223333445556887754
No 309
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=28.30 E-value=1.9e+02 Score=21.62 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCh----------H------HHHHHHHHHcCcCeEEEcccCC-chhH------HHHHHHH
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQP----------A------DILPKLFKEWKTTCLTFEEDPE-PFGK------VRDQNIM 126 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~----------~------~~l~~l~~~~~~~~V~~~~~~~-~~~~------~~d~~v~ 126 (156)
.+.++++.|++.|+.+....... . ....+++++.|+..|.+..... ..+. +..+++.
T Consensus 77 ~~~~l~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~ 156 (305)
T 3obe_A 77 ASKDYKKMVDDAGLRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPSLPRIENEDDAKVVSEIFNRAG 156 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56788899999999987654221 1 1234567788999998752211 1111 2223344
Q ss_pred HHHHhCCceEEEe
Q psy6650 127 TLCRELNIEVIAR 139 (156)
Q Consensus 127 ~~l~~~~i~~~~~ 139 (156)
+.+++.||++...
T Consensus 157 ~~a~~~Gv~l~lE 169 (305)
T 3obe_A 157 EITKKAGILWGYH 169 (305)
T ss_dssp HHHHTTTCEEEEE
T ss_pred HHHHHcCCEEEEe
Confidence 4555679887643
No 310
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=28.29 E-value=1e+02 Score=23.48 Aligned_cols=33 Identities=6% Similarity=0.114 Sum_probs=20.9
Q ss_pred EEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 108 LTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 108 V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.+-+|.+..++.+..+...|++.||.+..+.
T Consensus 162 ~~~Q~~~~~~~~~~e~~l~~~~~~~gi~v~a~s 194 (327)
T 1gve_A 162 TVYQGMYNAITRQVETELFPCLRHFGLRFYAFN 194 (327)
T ss_dssp EEEEEECBTTBCGGGTTHHHHHHHHTCEEEEEC
T ss_pred EEEeccCcceecccHHHHHHHHHHcCCeEEEec
Confidence 344445555544444567788888888888764
No 311
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=28.23 E-value=89 Score=22.13 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc--------ChHHHHHHHHHHcCcCe
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG--------QPADILPKLFKEWKTTC 107 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~ 107 (156)
-....|.+|.+++...|+.++.+.. +..+.+.+++++++++-
T Consensus 76 ~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~ 125 (218)
T 3u5r_E 76 LIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGF 125 (218)
T ss_dssp TTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCc
Confidence 3457788999999988888887765 56677777887776653
No 312
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=28.08 E-value=1.7e+02 Score=21.14 Aligned_cols=73 Identities=7% Similarity=0.039 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEE--c--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIR--G--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~--g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~ 137 (156)
.|+.+-+..+++.+++.|..+.+.. . ++.. .+..+. ..+++.|++......... ..+ +.+.+.|++++
T Consensus 14 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~~~~~~~~---~~~-~~~~~~~iPvV 88 (288)
T 1gud_A 14 PFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLS-NKNYKGIAFAPLSSVNLV---MPV-ARAWKKGIYLV 88 (288)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHH-TSSEEEEEECCSSSSTTH---HHH-HHHHHTTCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHH---HHH-HHHHHCCCeEE
Confidence 4788888899999999999988876 3 3332 244444 357888877532211111 122 23345689999
Q ss_pred EecCC
Q psy6650 138 ARVSH 142 (156)
Q Consensus 138 ~~~~~ 142 (156)
.++..
T Consensus 89 ~~~~~ 93 (288)
T 1gud_A 89 NLDEK 93 (288)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 88753
No 313
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=28.05 E-value=1.6e+02 Score=20.75 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=36.0
Q ss_pred CCCeEEEEEcChHHHHHHHHHHcCcCeEEEccc-CC-chhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEED-PE-PFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 81 ~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~-~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
.|..|++-..........|++ .+|..|++... |. +.... .. .+.|++.||++..+...
T Consensus 96 ~g~tlYvTlePC~~Ca~aIi~-agI~rVVy~~~~~~d~~~~~--~~-~~~L~~aGI~V~~~~~~ 155 (178)
T 2w4l_A 96 KGCSMYVALFPCNECAKLIIQ-AGIKEVIFMSDKYHDSDEAT--AA-RLLFNMAGVTFRKFIPK 155 (178)
T ss_dssp TTCEEEEEECCCHHHHHHHHH-TTCCEEEEEECTTTTSHHHH--HH-HHHHHHHTCEEEECCCS
T ss_pred cccEEEEeCCcHHHHHHHHHH-HCCCEEEEEeccCCCCcchH--HH-HHHHHHCCCEEEEccHH
Confidence 477888766555556554444 59999877643 42 22211 11 46677789999986543
No 314
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=27.99 E-value=1.9e+02 Score=21.82 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=33.8
Q ss_pred CCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCC
Q psy6650 82 NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 82 g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
|.++....++..+.+.+++++.+.+-|+.+ .|...+. ..+.+++. .|+++..++|-
T Consensus 47 g~~v~~l~~~d~~~~~~~l~~~~~d~lIvD-~Y~~~~~-~~~~lk~~---~~~~i~~iDD~ 102 (282)
T 3hbm_A 47 PYPVYELSSESIYELINLIKEEKFELLIID-HYGISVD-DEKLIKLE---TGVKILSFDDE 102 (282)
T ss_dssp CSCEEECSSSCHHHHHHHHHHHTCSEEEEE-CTTCCHH-HHHHHHHH---HCCEEEEECSS
T ss_pred CCeEEEcCccCHHHHHHHHHhCCCCEEEEE-CCCCCHH-HHHHHHHh---cCcEEEEEecC
Confidence 777777665455556677777778766665 5555443 33444332 26777777764
No 315
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=27.88 E-value=2.3e+02 Score=22.65 Aligned_cols=36 Identities=3% Similarity=0.144 Sum_probs=18.0
Q ss_pred cCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 105 TTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 105 ~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+..|+++....++.....+.+++.|++.||+++...
T Consensus 45 v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~ 80 (433)
T 1ni5_A 45 LRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (433)
T ss_dssp EEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEE
Confidence 334455544333333334455566666666665543
No 316
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}
Probab=27.80 E-value=78 Score=23.00 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHcCc---CeEEEccc
Q psy6650 70 CLEDLDINLRKL-NSRLFVIRGQPADILPKLFKEWKT---TCLTFEED 113 (156)
Q Consensus 70 sL~~L~~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~~---~~V~~~~~ 113 (156)
.+.++=+.|++. |+++.+..+.+...+..+.+..++ +.++...+
T Consensus 118 g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~l~~f~~i~~~~~ 165 (275)
T 2qlt_A 118 GAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIKRPEYFITAND 165 (275)
T ss_dssp THHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHTCCCCSSEECGGG
T ss_pred CHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcCCCccCEEEEccc
Confidence 345555667777 888888877776666666666554 34554443
No 317
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=27.71 E-value=2.2e+02 Score=23.53 Aligned_cols=56 Identities=4% Similarity=-0.120 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCe--EEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHH
Q psy6650 69 QCLEDLDINLRKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~ 124 (156)
-.++.+-+.+-..|.. ..+.+|+..+.|.++++-.+++.++.+++......+++-+
T Consensus 433 ~~~~~~~~~wi~~G~~HH~~~~~g~~~~~L~~~a~~lgie~~~i~~~~~~~~~~~~~~ 490 (500)
T 4f2d_A 433 PDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALR 490 (500)
T ss_dssp SCHHHHHHHHHHTTCCSEEEEESSCCHHHHHHHHHHTTCEEEEESTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCeEEEECCCCHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH
Confidence 4566666666666765 5556799999999999999999999999988776655443
No 318
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=27.71 E-value=53 Score=24.67 Aligned_cols=78 Identities=22% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEcChH----HHHHHHHHH-----cCcCeEEEcccCCchhHHHHHHHHHHHHhCCc
Q psy6650 64 WRFLLQCLEDLDINLRKLNSRLFVIRGQPA----DILPKLFKE-----WKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134 (156)
Q Consensus 64 ~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~----~~l~~l~~~-----~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i 134 (156)
..-+.+.+.++++.+++.++++.|+.|--. +....+.+. -+-+.|+++..+........+.+.......++
T Consensus 52 ~~~i~~~~~~l~~~~~~~~~~i~I~~G~Ev~~~~~~~~~l~~~~~~~l~~~~~vl~e~~~~~~~~~~~~~l~~i~~~g~v 131 (262)
T 3qy7_A 52 PAAVREAADQLNKRLIKEDIPLHVLPGQEIRIYGEVEQDLAKRQLLSLNDTKYILIEFPFDHVPRYAEQLFYDLQLKGYI 131 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEECCCEEECCTTHHHHHHTTCSCCGGGSSEEEEECCTTCCCTTHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEecCeEEecchhHHHHHhcCCCcEECCceEEEEeCCCccCHHHHHHHHHHHHHCCCc
Confidence 456778888999988888888888776422 222333321 12244666544443333445556665555567
Q ss_pred eEEEecC
Q psy6650 135 EVIARVS 141 (156)
Q Consensus 135 ~~~~~~~ 141 (156)
.+..+.+
T Consensus 132 ~ILAHPe 138 (262)
T 3qy7_A 132 PVIAHPE 138 (262)
T ss_dssp EEEECGG
T ss_pred EEEECCC
Confidence 7766654
No 319
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=27.56 E-value=1.1e+02 Score=19.70 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=15.1
Q ss_pred HHHHHhCCCeEEEEEcChHH
Q psy6650 75 DINLRKLNSRLFVIRGQPAD 94 (156)
Q Consensus 75 ~~~L~~~g~~L~v~~g~~~~ 94 (156)
-+.|++.|+.+.+..|.+..
T Consensus 33 l~~l~~~Gi~~~iaTGR~~~ 52 (126)
T 1xpj_A 33 LREYHQLGFEIVISTARNMR 52 (126)
T ss_dssp HHHHHHTTCEEEEEECTTTT
T ss_pred HHHHHhCCCeEEEEeCCChh
Confidence 34556679999999998753
No 320
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=27.52 E-value=1.5e+02 Score=20.12 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcC---------------hHHHHHHHHHHcCcC--eEEE
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQ---------------PADILPKLFKEWKTT--CLTF 110 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~---------------~~~~l~~l~~~~~~~--~V~~ 110 (156)
++..+.++=+.|++.|.++.|+.+. +...+..+++..++. .|++
T Consensus 43 ~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~v~~ 103 (176)
T 2fpr_A 43 FEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLI 103 (176)
T ss_dssp BCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCCeeEEEE
Confidence 3456666666778889999998876 566777788877764 5554
No 321
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=27.51 E-value=1.5e+02 Score=22.55 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCeEEE-EEcChHHHHHHHHHHcCcC--eEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 69 QCLEDLDINLRKLNSRLFV-IRGQPADILPKLFKEWKTT--CLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v-~~g~~~~~l~~l~~~~~~~--~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+++..|. +|.+.|.--.+ +..-..+.+.++.+..++. -+..+-+|.+... ...+...|++.||.+..+.
T Consensus 147 e~~~al~-~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~--~~~l~~~~~~~gi~v~a~s 218 (324)
T 3ln3_A 147 DTWERLE-ECXDAGLVXSIGVSNFNHRQLERILNXPGLXYXPVCNQVECHLYLN--QRXLLDYCESXDIVLVAYG 218 (324)
T ss_dssp HHHHHHH-HHHHTTSEEEEEEESCCHHHHHHHHTCTTCCCCCSEEEEECBTTBC--CHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHH-HHHhcCCeeEEEecCCcHHHHHHHHHhcCccCCceeeEeeeCcccc--hHHHHHHHHHcCCEEEEec
Confidence 4444443 23445643233 3444667888888765554 2234444444432 2568889999999998874
No 322
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=27.46 E-value=1.7e+02 Score=21.01 Aligned_cols=70 Identities=9% Similarity=-0.037 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++. +.+..+. ..+++.|++.... ... ..+ +.+. .|++++.+
T Consensus 21 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~-~~~----~~~-~~l~-~~iPvV~~ 92 (285)
T 3c3k_A 21 PFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLS-GKMVDGVITMDAL-SEL----PEL-QNII-GAFPWVQC 92 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHH-TTCCSEEEECCCG-GGH----HHH-HHHH-TTSSEEEE
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEeCCC-CCh----HHH-HHHh-cCCCEEEE
Confidence 47778888899999999999888764 332 2333333 4588988775321 111 122 2344 68999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 93 ~~~ 95 (285)
T 3c3k_A 93 AEY 95 (285)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
No 323
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=27.31 E-value=1.9e+02 Score=21.79 Aligned_cols=69 Identities=9% Similarity=0.019 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC--h---HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ--P---ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~---~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+.+.++ |..+.+...+ . ...+.+.+...+++.|++.... ... ..+ +.+.+.|++++.+
T Consensus 86 ~~~~~~~~gi~~~a~--g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~-~~~----~~~-~~l~~~~iPvV~i 157 (366)
T 3h5t_A 86 MASVDFLAGVAQAAG--DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVA-KGD----PHI-DAIRARGLPAVIA 157 (366)
T ss_dssp HHHHHHHHHHHHHSS--SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCC-TTC----HHH-HHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHh--hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCC-CCh----HHH-HHHHHCCCCEEEE
Confidence 477777778888777 8888776533 1 2334455556688888765331 111 112 3344458999988
Q ss_pred cC
Q psy6650 140 VS 141 (156)
Q Consensus 140 ~~ 141 (156)
+.
T Consensus 158 ~~ 159 (366)
T 3h5t_A 158 DQ 159 (366)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 324
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.28 E-value=1.6e+02 Score=20.45 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCe--EEEEEcChHHHHHHHHHH---cCcCeEEEcccCCchhHHHHHHHHHHHHhCCc
Q psy6650 70 CLEDLDINLRKLNSR--LFVIRGQPADILPKLFKE---WKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134 (156)
Q Consensus 70 sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~---~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i 134 (156)
.+...++.+++.|.. +.+..|+..+.++.+... ..++.|+++.... ....-.+.+.+.|+..|+
T Consensus 101 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~-~~~~~l~~~~~~L~pgG~ 169 (225)
T 3tr6_A 101 STALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA-NTDLYYEESLKLLREGGL 169 (225)
T ss_dssp HHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG-GHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH-HHHHHHHHHHHhcCCCcE
Confidence 445556666666754 888999998888776643 3577888765422 222333455556654344
No 325
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=27.03 E-value=1.8e+02 Score=21.14 Aligned_cols=73 Identities=7% Similarity=-0.024 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|..+-+..+++.+++.|..+.+... ++.. .+..+.. .+++.|++......... ..+ +.+.+.|++++.+
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~---~~~-~~~~~~~iPvV~~ 89 (306)
T 2vk2_A 15 GWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVA-QGVDAIFIAPVVATGWE---PVL-KEAKDAEIPVFLL 89 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCSSSSSCH---HHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhHH---HHH-HHHHHCCCCEEEe
Confidence 36667777888899999999988764 3332 3444443 57998877543221111 112 3344568999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 90 ~~~ 92 (306)
T 2vk2_A 90 DRS 92 (306)
T ss_dssp SSC
T ss_pred cCC
Confidence 653
No 326
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}
Probab=27.00 E-value=65 Score=22.57 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccC
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~ 114 (156)
+.++.++=+.|++.|+.+.|..|.+......+.. .-.+.|++..+.
T Consensus 38 ~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~~-~~~d~v~~~~~~ 83 (196)
T 2oda_A 38 TPGAQNALKALRDQGMPCAWIDELPEALSTPLAA-PVNDWMIAAPRP 83 (196)
T ss_dssp CTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHHT-TTTTTCEECCCC
T ss_pred CcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhcC-ccCCEEEECCcC
Confidence 3555666666777799999999888776666665 445667766544
No 327
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=26.98 E-value=95 Score=20.11 Aligned_cols=40 Identities=5% Similarity=0.126 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEE-------cChHHHHHHHHHHcCcCe
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIR-------GQPADILPKLFKEWKTTC 107 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~-------g~~~~~l~~l~~~~~~~~ 107 (156)
...|.++.+++...|+.++-+. .+..+.+.++++++++.-
T Consensus 48 ~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (158)
T 3eyt_A 48 IPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKF 94 (158)
T ss_dssp HHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCS
T ss_pred hHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCc
Confidence 5778888888877777777666 457788889999887763
No 328
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=26.42 E-value=1.3e+02 Score=23.36 Aligned_cols=66 Identities=9% Similarity=0.190 Sum_probs=44.4
Q ss_pred eEEEEeCCCCcCCCCCCcc-hHHHHHHHHHHHHHHHH-hC------CCeEEEEEcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 44 RCVFILDPWFAGSSNVGIN-KWRFLLQCLEDLDINLR-KL------NSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 44 i~vfi~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~-~~------g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
-+++++|++- . ..++. -.+|....++.+-+.++ +. |++.++..+.....++. ..+.+++.|-++..
T Consensus 212 d~i~i~D~~~--~-~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~~~~l~~-l~~~g~d~i~~d~~ 285 (367)
T 1r3s_A 212 QALQLFESHA--G-HLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDGHFALEE-LAQAGYEVVGLDWT 285 (367)
T ss_dssp SEEEEEETTG--G-GSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTCGGGHHH-HTTSSCSEEECCTT
T ss_pred CEEEEecCcc--c-cCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCcHHHHHH-HHhcCCCEEEeCCC
Confidence 3678888742 1 33443 24688888888888888 66 68877766555556664 45578998877543
No 329
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=26.29 E-value=1.8e+02 Score=22.21 Aligned_cols=66 Identities=12% Similarity=0.290 Sum_probs=45.1
Q ss_pred EEEEeCCCCcCCCCCCcc-hHHHHHHHHHHHHHHHHhC-CCeEEEEEcChHHHHHHHHHHcCcCeEEEcccC
Q psy6650 45 CVFILDPWFAGSSNVGIN-KWRFLLQCLEDLDINLRKL-NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~ 114 (156)
+++++|++-- ..++. -.+|....++.+-+.+++. |++++...+.....++. ..+.+++.+-++...
T Consensus 195 ~i~i~d~~~~---~lsp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~~~~l~~-l~~~g~d~~~~d~~~ 262 (338)
T 2eja_A 195 VVQIFDSWVN---NLSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGSSSFIDL-AVDYRADALSVDWSV 262 (338)
T ss_dssp EEEEEETTGG---GSCHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHH-HTTSCCSEEECCTTS
T ss_pred EEEEecCccc---cCCHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCcHHHHHH-HHHcCCCEEEeCCCC
Confidence 5788887421 23432 2478888888888888877 88877766655666665 455789888776543
No 330
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=26.25 E-value=1.8e+02 Score=21.13 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcc
Q psy6650 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEE 112 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~ 112 (156)
++-+.+.+.|..+++..-+..+.+..+.+ .|++.|+++.
T Consensus 187 ~~v~~~~~~G~~v~~WTVn~~~~~~~l~~-~GVdgIiTD~ 225 (238)
T 3no3_A 187 DWVKDCKVLGMTSNVWTVDDPKLMEEMID-MGVDFITTDL 225 (238)
T ss_dssp THHHHHHHTTCEEEEECCCSHHHHHHHHH-HTCSEEEESC
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHH-cCCCEEECCC
Confidence 45566778899888887666677776654 5899999886
No 331
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=26.17 E-value=2e+02 Score=22.26 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=36.3
Q ss_pred HhCCCe-EEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 79 RKLNSR-LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 79 ~~~g~~-L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.|.- -+=+..-..+.+.++++..++.-.+.+-+|.+..++ ..+...|++.||.+..+.
T Consensus 179 ~~~GkIr~iGvSn~~~~~l~~~~~~~~i~p~v~Q~e~~~~~~~--~~ll~~~~~~gI~v~a~s 239 (344)
T 2bgs_A 179 VKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKN--DKIFEACKKHGIHITAYS 239 (344)
T ss_dssp HHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred HHcCCccEEEEecCCHHHHHHHHHhcCCCceeeecccCcccCc--HHHHHHHHHCCCEEEEeC
Confidence 344532 222345556788888887655323334444444332 467889999999998774
No 332
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=26.17 E-value=61 Score=25.67 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=48.1
Q ss_pred cCCCCccccHHHHHHHhc-----CCcceEEEEeCCCCcC---CCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcCh
Q psy6650 22 RKGLRMHDNPSLREGLKG-----CTTFRCVFILDPWFAG---SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQP 92 (156)
Q Consensus 22 r~DLRl~DN~aL~~A~~~-----~~~vi~vfi~d~~~~~---~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~ 92 (156)
+|=-|+.-|+++....++ .+-+.|+||.+..... ..-.|-.| +=...|.+.-+++.++|++-+++.|-+
T Consensus 13 ~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r--~sid~l~~~~~~~~~lGi~~v~LFgv~ 89 (337)
T 1w5q_A 13 TRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVER--LSIDQLLIEAEEWVALGIPALALFPVT 89 (337)
T ss_dssp CCTTTTTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEE--EEHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCCcCCCChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCcee--eCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 466788889999888764 2458999999864321 11234444 334677777788889999988888763
No 333
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=26.16 E-value=2.3e+02 Score=21.95 Aligned_cols=70 Identities=7% Similarity=-0.053 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCeEEEE---EcChHHHHHHHHHHcCc-----CeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 71 LEDLDINLRKLNSRLFVI---RGQPADILPKLFKEWKT-----TCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~---~g~~~~~l~~l~~~~~~-----~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
++.|.+.|+++|+.-.+. ..++.+-+..+++.|++ ..|+....-.+....+-.++.+.+.+.+..+..+.
T Consensus 68 l~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~~~i~~~~~~~~nVlil~ 145 (294)
T 3g40_A 68 LPSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRKASMYRMGVLLFS 145 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHHHHHHHHHHhCceEEEEe
Confidence 477788999999986655 36677788889999876 46777666666655555666666655566666554
No 334
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=26.08 E-value=1.4e+02 Score=22.41 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCceEEEec
Q psy6650 123 QNIMTLCRELNIEVIARV 140 (156)
Q Consensus 123 ~~v~~~l~~~~i~~~~~~ 140 (156)
..+...|++.||.+..+.
T Consensus 176 ~~l~~~~~~~gi~v~a~s 193 (281)
T 1vbj_A 176 KALCEYCKSKNIAVTAWS 193 (281)
T ss_dssp HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHcCCEEEEec
Confidence 356677777788777653
No 335
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=26.04 E-value=1.3e+02 Score=20.35 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHc
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEW 103 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 103 (156)
....|.++.+++...|+.++.+..++.+.+.++++++
T Consensus 50 ~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~ 86 (187)
T 1we0_A 50 ELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENS 86 (187)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHh
Confidence 3567888888888889998888888777777777765
No 336
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=25.96 E-value=1.6e+02 Score=20.17 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCeEEEEEcChHH-HH----HHHHHHcCcCeEEEcccC-CchhHHHHHHHHHHHHhCCceEEE
Q psy6650 73 DLDINLRKLNSRLFVIRGQPAD-IL----PKLFKEWKTTCLTFEEDP-EPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g~~~~-~l----~~l~~~~~~~~V~~~~~~-~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
+|...|+++|+.=+++.|-..+ ++ .++. ..|...++..+.. +..+...+..+. .+...|+.+..
T Consensus 110 ~L~~~L~~~gi~~lvi~G~~t~~CV~~Ta~da~-~~Gy~v~vv~Da~~~~~~~~h~~al~-~m~~~g~~v~~ 179 (180)
T 1im5_A 110 DLAKILRGNGVKRVYICGVATEYCVRATALDAL-KHGFEVYLLRDAVKGIKPEDEERALE-EMKSRGIKIVQ 179 (180)
T ss_dssp SHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHH-HTTCEEEEEEEEEECSCHHHHHHHHH-HHHHTTCEEEC
T ss_pred CHHHHHHhCCCCEEEEEEeecCHHHHHHHHHHH-HCCCEEEEehhhccCCCHHHHHHHHH-HHHHcCCEEEe
Confidence 5777888888876666663221 11 1222 2355544444333 333444444443 34445766653
No 337
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=25.95 E-value=1.9e+02 Score=22.96 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=42.7
Q ss_pred HHHhCCCeEEEEEcC---hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCe
Q psy6650 77 NLRKLNSRLFVIRGQ---PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHT 143 (156)
Q Consensus 77 ~L~~~g~~L~v~~g~---~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~ 143 (156)
..++.|.++.+-.|+ |.+.+.+.+...+++.|-.--... .+..+.+.+++.+|.+.....++
T Consensus 205 ~ar~~Gl~~t~HAGE~~~p~~~i~~al~~lga~RIgHG~~~~-----~d~~L~~~l~~~~I~lEvCP~SN 269 (380)
T 4gxw_A 205 DARAAGFRTTAHAGEFGMPWRNVETAVDLLHVDRVDHGYTIV-----DNPELCARYAERGIVFTVVPTNS 269 (380)
T ss_dssp HHHHTTCEEEEEESCTTCCHHHHHHHHHTSCCSEEEECGGGG-----GCHHHHHHHHHHTCEEEECTTCH
T ss_pred HHHHcCCCeeeeccccCCchHHHHHHHHHcCCcccccceeec-----cChHHHHHHHHhCceeEECCcch
Confidence 356789999999887 456677777778999886543221 12345666777789888877654
No 338
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=25.89 E-value=2e+02 Score=21.17 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=35.7
Q ss_pred HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 95 ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 95 ~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|.+-+++.+++.|+..-.++.+....-.-+.+.++..||++...
T Consensus 140 ~L~~Ri~~~~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~~vkvTRi 184 (212)
T 3vdp_A 140 ELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRI 184 (212)
T ss_dssp HHHHHHHHSCCSEEEECCCSSHHHHHHHHHHHHHHTTTTCEEEEC
T ss_pred HHHHHHhcCCCcEEEEECCCCccHHHHHHHHHHHhhhcCCCeeec
Confidence 334444456899999999999999888889999998888888764
No 339
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=25.71 E-value=1.2e+02 Score=23.09 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=36.6
Q ss_pred eEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 84 RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 84 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
+..+..|.- .....++.-.+.-|+...+.++.+... -|...|.+.||++..+.+
T Consensus 129 p~~lk~G~k--eV~KaIekgKAkLVVIA~DadP~eivk--~LpaLC~k~gVPy~~V~s 182 (256)
T 3izc_H 129 PYAVKYGLN--HVVALIENKKAKLVLIANDVDPIELVV--FLPALCKKMGVPYAIVKG 182 (256)
T ss_dssp SCCEEESHH--HHHHHHHHTCCSEEEEESCCSSGGGTT--HHHHHHHHHTCCEEEESC
T ss_pred ChhhhccHH--HHHHHHHhCcceEEEEeCCCChHHHHH--HHHHHHHhcCCCEEEECC
Confidence 466677733 344566777888888888888775443 256778778888876654
No 340
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=25.68 E-value=1.5e+02 Score=19.51 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCC--CeEEEEEcC----hHHHHHHHHHHcCcCe
Q psy6650 68 LQCLEDLDINLRKLN--SRLFVIRGQ----PADILPKLFKEWKTTC 107 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g--~~L~v~~g~----~~~~l~~l~~~~~~~~ 107 (156)
...|.++.+++.+.| +.++.+.-+ ..+.+.+++++++++-
T Consensus 53 ~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 53 TAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSF 98 (174)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCG
T ss_pred HHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 467888888888887 777777654 5678889999988764
No 341
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=25.61 E-value=52 Score=21.85 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceE
Q psy6650 98 KLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136 (156)
Q Consensus 98 ~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~ 136 (156)
+-+.+.||+.|+++...-.| ..|.+.+.+.+.+.|++|
T Consensus 79 ~Ral~~GI~~vvfDrgg~~y-hGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 79 ERALEKGIKDVSFDRSGFQY-HGRVQALADAAREAGLQF 116 (116)
T ss_dssp HHHHTTTCCCCEEECTTSCS-SSHHHHHHHHHHHTTCCC
T ss_pred HHHHHCCCCEEEEecCCCcc-cHHHHHHHHHHHHhCCCC
Confidence 33445699999999764344 357788888888888864
No 342
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=25.44 E-value=1.3e+02 Score=23.10 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=32.7
Q ss_pred EEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 88 IRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 88 ~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+..-..+.+.++.+..++.-++.+-+|.+..++ ..+...|++.||.+..+.
T Consensus 173 vSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 223 (331)
T 3h7r_A 173 VSNFSSKKLTDLLNVARVTPAVNQVECHPVWQQ--QGLHELCKSKGVHLSGYS 223 (331)
T ss_dssp EESCCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHHTCEEEEES
T ss_pred ecCCCHHHHHHHHHhcCCCceeEEeecccccCC--HHHHHHHHHCCCEEEEeC
Confidence 334456678888776655433444445454333 467889999999998774
No 343
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=25.43 E-value=89 Score=24.64 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=48.7
Q ss_pred EEEecCCCCccccHHHHHHHhc-----CCcceEEEEeCCCCcCC---CCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy6650 18 VHWFRKGLRMHDNPSLREGLKG-----CTTFRCVFILDPWFAGS---SNVGINKWRFLLQCLEDLDINLRKLNSRLFVIR 89 (156)
Q Consensus 18 l~Wfr~DLRl~DN~aL~~A~~~-----~~~vi~vfi~d~~~~~~---~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~ 89 (156)
+-.++|=-|+.-|+++....++ .+-+.|+||.+...... .-.|-.| +=...|.+.-+++.++|++-+++.
T Consensus 7 l~~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r--~sid~l~~~~~~~~~lGi~~v~LF 84 (328)
T 1w1z_A 7 LNIVHRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFR--FTIDRAVEECKELYDLGIQGIDLF 84 (328)
T ss_dssp ---CCCGGGGTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEEETTEEEEEE--EEHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcccCCCcCCCChHHHHHHhcCcCCHHHceeeEEEecCCCCccccCCCCCeeE--eCHHHHHHHHHHHHHCCCCEEEEE
Confidence 3455677889999999888764 24589999998643211 1123344 334677777778889999988887
Q ss_pred cCh
Q psy6650 90 GQP 92 (156)
Q Consensus 90 g~~ 92 (156)
|-|
T Consensus 85 gvp 87 (328)
T 1w1z_A 85 GIP 87 (328)
T ss_dssp ECC
T ss_pred CCC
Confidence 754
No 344
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=25.33 E-value=1.2e+02 Score=21.08 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcCh---------------HHHHHHHHHHcCc--CeEEE
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQP---------------ADILPKLFKEWKT--TCLTF 110 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~---------------~~~l~~l~~~~~~--~~V~~ 110 (156)
...+.++=+.|++.|+.+.++.+.+ ...+..++++.++ +.++.
T Consensus 52 ~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~f~~~~~ 111 (211)
T 2gmw_A 52 IDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYY 111 (211)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred CcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCceEEEEE
Confidence 3555666667788899999999887 4667777777775 45553
No 345
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=25.29 E-value=2.2e+02 Score=21.51 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 91 QPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 91 ~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
-..+.+.++++..++.-.+.+-+|.+..++ ..+...|++.||.+..+.
T Consensus 154 ~~~~~l~~~~~~~~~~p~v~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 201 (298)
T 1vp5_A 154 FYPDRLMDLMVHHEIVPAVNQIEIHPFYQR--QEEIEFMRNYNIQPEAWG 201 (298)
T ss_dssp CCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred CCHHHHHHHHHhCCCCceEEEEecccccCC--HHHHHHHHHCCCEEEEec
Confidence 344556666665444112223333333322 357778888888887764
No 346
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0
Probab=25.23 E-value=86 Score=22.20 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcC-----cCeEEEcccC
Q psy6650 71 LEDLDINLRKLNSRLFVIRGQPADILPKLFKEWK-----TTCLTFEEDP 114 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~-----~~~V~~~~~~ 114 (156)
+.++-+.|++.|..+.++.+.+...+..+.+..+ ++.++...+.
T Consensus 116 ~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 164 (277)
T 3iru_A 116 WKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPASTVFATDV 164 (277)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTTCCCSEEECGGGS
T ss_pred HHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcccCCCceEecHHhc
Confidence 3455567888899999998877766666655432 4666665553
No 347
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=25.14 E-value=1.5e+02 Score=24.28 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEE-EEc-ChHHHHHHHHHHc--CcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFV-IRG-QPADILPKLFKEW--KTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v-~~g-~~~~~l~~l~~~~--~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|+.+.+..+++.+.. ..+.+ +.| -...++..++.+. ++..|+++....+.+ ..+.+++.+++.|++++.++
T Consensus 194 ~~~~~~i~~ir~~~~~--~kvvvalSGGvDSsvla~ll~~~g~~v~av~vd~g~~~~~--e~~~v~~~~~~lgi~~~vv~ 269 (503)
T 2ywb_A 194 HVLEELLREVRERAGK--DRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLG--EREEVEGALRALGVNLLVVD 269 (503)
T ss_dssp HHHHHHHHHHHHHHTT--SEEEEEECSSHHHHHHHHHHHHHTCEEEEEEEECSCSCTT--HHHHHHHHHHHTTCCEEEEE
T ss_pred hhhHHHHHhhhhhccC--ccEEEEecCCcchHHHHHHHHHcCCeEEEEEEeCCCCChH--HHHHHHHHHHHhCCCEEEEE
Confidence 3556666777776643 34444 344 3344555566554 455667765543321 12456667777899998876
Q ss_pred CC
Q psy6650 141 SH 142 (156)
Q Consensus 141 ~~ 142 (156)
-.
T Consensus 270 ~~ 271 (503)
T 2ywb_A 270 AK 271 (503)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 348
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=25.04 E-value=2.3e+02 Score=21.53 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 93 ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+.+.++++..+++.+- -+|.+..++.+. +...|++.||.+..+.
T Consensus 173 ~~~l~~~~~~~~~~~~Q--~~~nl~~~~~e~-l~~~~~~~gI~v~a~s 217 (317)
T 1ynp_A 173 PNVIKEYLKRSNIVSIM--MQYSILDRRPEE-WFPLIQEHGVSVVVRG 217 (317)
T ss_dssp HHHHHHHHHHSCCCEEE--EECBTTBCGGGG-GHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEe--ccCCchhCCHHH-HHHHHHHcCCeEEEec
Confidence 34444555444443322 233333333223 6677877888877663
No 349
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=25.03 E-value=1.6e+02 Score=19.93 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCC---CeEEEEE---cChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 69 QCLEDLDINLRKLN---SRLFVIR---GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 69 ~sL~~L~~~L~~~g---~~L~v~~---g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
-||..|...|.+++ +.+-|++ |...+.=..++...++.-+-||-.+.+..+ +..++.||.+..++
T Consensus 52 GSlEAl~~~L~~l~~~ev~i~Ii~~gVG~ItesDV~lA~as~aiIigFNV~~~~~a~-------~~A~~~gV~I~~~~ 122 (135)
T 1z9b_A 52 GSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDANAK-------RAAESEKVDIRLHR 122 (135)
T ss_dssp HHHHHHHHHHTTCCCSSCEEEEEEEEESCBCHHHHHHHHHHTCEEEESSCCBCTTHH-------HHHHTTTCCCEECT
T ss_pred chHHHHHHHHHhcCCCceEEEEEeecCCCCCHHHHHHHHHcCCEEEEeeCCCCHHHH-------HHHHHcCCeEEEeC
Confidence 68888888888875 5666664 665543334666656656666766555532 33445688887654
No 350
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=24.89 E-value=41 Score=24.45 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEcC-------h--HHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQ-------P--ADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~-------~--~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
++.+.-+.+++.|..-+-+.+. + .+.+.++++++++..+.++..+. ...+..++..+.+++.|++...+
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEe
Confidence 5666667777888764444321 1 24667778888886554433221 22333334444555567776654
No 351
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=24.86 E-value=1.3e+02 Score=23.49 Aligned_cols=30 Identities=7% Similarity=0.063 Sum_probs=17.0
Q ss_pred cccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 111 EEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 111 ~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+-+|.+..++.+..+...|++.||.+..+.
T Consensus 198 Q~~yn~~~~~~e~~l~~~~~~~gi~v~a~s 227 (360)
T 2bp1_A 198 QGMYNATTRQVETELFPCLRHFGLRFYAYN 227 (360)
T ss_dssp EEECBTTBCGGGTTHHHHHHHHTCEEEEEC
T ss_pred eeccchhhccchhhHHHHHHHcCCeEEEec
Confidence 334444433333456677777777777663
No 352
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=24.84 E-value=83 Score=17.65 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKE 102 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 102 (156)
.+.+|++.|+++|.+. .|.-.+.+.+|.+.
T Consensus 9 tV~eLK~~Lk~RGL~~---~G~KadLieRL~~~ 38 (51)
T 1h1j_S 9 TVVQLKDLLTKRNLSV---GGLKNELVQRLIKD 38 (51)
T ss_dssp CHHHHHHHHHHTTCCC---CSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCC---CCcHHHHHHHHHHH
Confidence 3678999999999773 57777776666543
No 353
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=24.77 E-value=1.1e+02 Score=23.95 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=43.9
Q ss_pred EEEEeCCCCcCCCCCCcc-hHHHHHHHHHHHHHHHHhC----CCeEEEEEcChHHHHHHHHHHcCcCeEEEcccC
Q psy6650 45 CVFILDPWFAGSSNVGIN-KWRFLLQCLEDLDINLRKL----NSRLFVIRGQPADILPKLFKEWKTTCLTFEEDP 114 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~----g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~ 114 (156)
+++++|++- . ..++. -.+|....++.+-+.+++. |++++.+.+.....|+.+ .+.+++.|-++...
T Consensus 213 ~i~ifDs~~--~-~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g~~~~l~~l-~~~g~d~i~~d~~~ 283 (368)
T 4exq_A 213 AVMIFDTWG--G-ALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGGGLWLEDL-AATGVDAVGLDWTV 283 (368)
T ss_dssp EEEEEETTG--G-GSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETTCGGGHHHH-HTSSCSEEECCTTS
T ss_pred EEEEeCCcc--c-cCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHHHHHH-HHhCCCEEeeCCCC
Confidence 677888742 1 22322 2468888899888888875 478776665555667765 55789888775443
No 354
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=24.72 E-value=1.5e+02 Score=21.27 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKE 102 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 102 (156)
-+..|.++.++++++|+.++-+.-++.+...++++.
T Consensus 50 el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~ 85 (224)
T 1prx_A 50 ELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKD 85 (224)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 456788899999999999988888877766666664
No 355
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=24.72 E-value=1.3e+02 Score=20.21 Aligned_cols=43 Identities=9% Similarity=0.120 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEc--------ChHHHHHHHHHH-cCcCeE
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRG--------QPADILPKLFKE-WKTTCL 108 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~-~~~~~V 108 (156)
-.+..|.+|.+++...|+.++.+.. +..+.+.+++++ ++++--
T Consensus 55 ~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~ 106 (180)
T 3kij_A 55 RNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFP 106 (180)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCc
Confidence 4457789999999988888777752 356788889998 877643
No 356
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=24.71 E-value=2e+02 Score=20.74 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEE---cChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIR---GQPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
.|+.+-+..+++.++++|..+.++. +++.. .+..++. .+++.|++... ... .....+ +.+.+.|+++..
T Consensus 17 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~-~~~--~~~~~~-~~~~~~~ipvV~ 91 (303)
T 3d02_A 17 PWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIA-RKVDAITIVPN-DAN--VLEPVF-KKARDAGIVVLT 91 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHH-TTCSEEEECCS-CHH--HHHHHH-HHHHHTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH-cCCCEEEEecC-ChH--HHHHHH-HHHHHCCCeEEE
Confidence 4777888889999999999987543 34433 3444543 57898877543 121 111222 344557999998
Q ss_pred ecCC
Q psy6650 139 RVSH 142 (156)
Q Consensus 139 ~~~~ 142 (156)
++..
T Consensus 92 ~~~~ 95 (303)
T 3d02_A 92 NESP 95 (303)
T ss_dssp ESCT
T ss_pred EecC
Confidence 8754
No 357
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=24.61 E-value=1.4e+02 Score=21.46 Aligned_cols=63 Identities=11% Similarity=-0.038 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCe--EEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCc
Q psy6650 71 LEDLDINLRKLNSR--LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134 (156)
Q Consensus 71 L~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i 134 (156)
+...++.+++.|.. +.++.|+..+.++.+-....++.|+++.....+ ..-.+.+.+.|+..|+
T Consensus 101 ~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~~~-~~~l~~~~~~LkpGG~ 165 (248)
T 3tfw_A 101 AQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNN-PHYLRWALRYSRPGTL 165 (248)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCGGGH-HHHHHHHHHTCCTTCE
T ss_pred HHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCchHHH-HHHHHHHHHhcCCCeE
Confidence 44455566666654 888899988777655322367888886643222 2333445555554453
No 358
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=24.52 E-value=2.2e+02 Score=22.19 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcC
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQ 91 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~ 91 (156)
++.+|.+.++++|....|+.+.
T Consensus 28 ~~~~l~~~l~~~g~~~liVtd~ 49 (371)
T 1o2d_A 28 ILEKRGNIIDLLGKRALVVTGK 49 (371)
T ss_dssp HHHHHGGGGGGTCSEEEEEEES
T ss_pred HHHHHHHHHHHcCCEEEEEECc
Confidence 3444555555555454544443
No 359
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=24.49 E-value=2.8e+02 Score=22.44 Aligned_cols=122 Identities=7% Similarity=-0.006 Sum_probs=61.5
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcC---
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQ--- 91 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~--- 91 (156)
...+.|.|-+++ .+..|.+.+-+.+.+|+-..+.......+.. .....+.+.+.-+.+++.|....+-..+
T Consensus 103 ~~v~~~~r~~~~-----di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s-~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r 176 (423)
T 3ivs_A 103 CKILTHIRCHMD-----DARVAVETGVDGVDVVIGTSQYLRKYSHGKD-MTYIIDSATEVINFVKSKGIEVRFSSEDSFR 176 (423)
T ss_dssp SEEEEEEESCHH-----HHHHHHHTTCSEEEEEEEC--------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGG
T ss_pred CEEEEeeccChh-----hHHHHHHcCCCEEEEEeeccHHHHHHHcCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEccCcC
Confidence 346778774432 3566666666777888754433222222222 2355666666777778889887654322
Q ss_pred -hHHHHHHH---HHHcCcCeEEEcccCCchhHHHHHHHHHHH-HhCC--ceEEEecCC
Q psy6650 92 -PADILPKL---FKEWKTTCLTFEEDPEPFGKVRDQNIMTLC-RELN--IEVIARVSH 142 (156)
Q Consensus 92 -~~~~l~~l---~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l-~~~~--i~~~~~~~~ 142 (156)
+.+.+.++ +.+.+++.|..-+..+.-.......+-+.+ +..+ +.+|.+++.
T Consensus 177 ~d~~~~~~v~~~~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~ 234 (423)
T 3ivs_A 177 SDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCDIECHFHNDT 234 (423)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHCSSEEEEEEBCTT
T ss_pred CCHHHHHHHHHHHHHhCCCccccCCccCcCCHHHHHHHHHHHHhhcCCeEEEEECCCC
Confidence 22223333 445799999777666543333333333333 2233 555555554
No 360
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=24.42 E-value=1.5e+02 Score=20.04 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcC--------hHHHHHHHHHHcCcCeEEE
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQ--------PADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~~~~~~~~V~~ 110 (156)
.+..|.++.++++..|+.++.+..+ ..+.+.+++++++++--++
T Consensus 67 ~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~ 118 (185)
T 2gs3_A 67 NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMF 118 (185)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEB
T ss_pred HHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeee
Confidence 4577889999999888888877532 3567888999998874444
No 361
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=24.32 E-value=1.6e+02 Score=22.34 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=32.1
Q ss_pred EcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 89 RGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 89 ~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
..-..+.+.++++..++.-++.+-+|.+..++ ..+...|++.||.+..+.
T Consensus 153 Sn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 202 (317)
T 1qwk_A 153 SNWNNDQISRALALGLTPVHNSQVELHLYFPQ--HDHVDFCKKHNISVTSYA 202 (317)
T ss_dssp ESCCHHHHHHHHTTCSSCCCEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred cCCCHHHHHHHHHhcCCccceecceeccccCc--HHHHHHHHHcCCEEEEec
Confidence 34556777778776554333344445544432 468889999999998874
No 362
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=24.22 E-value=1.3e+02 Score=20.49 Aligned_cols=39 Identities=13% Similarity=-0.067 Sum_probs=22.8
Q ss_pred HHHHHhCCCeEEEE-EcCh------HHHHHHHHHHcCcCeEEEccc
Q psy6650 75 DINLRKLNSRLFVI-RGQP------ADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 75 ~~~L~~~g~~L~v~-~g~~------~~~l~~l~~~~~~~~V~~~~~ 113 (156)
.+.+++.|+.++++ .|.. .+.|.+++...+-..+|...+
T Consensus 133 ~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~ 178 (198)
T 1n3y_A 133 IPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVED 178 (198)
T ss_dssp HHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESS
T ss_pred HHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCC
Confidence 34556778877655 4543 366777776655555554443
No 363
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=24.21 E-value=87 Score=21.13 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.4
Q ss_pred HHHHHHcCc
Q psy6650 97 PKLFKEWKT 105 (156)
Q Consensus 97 ~~l~~~~~~ 105 (156)
+.+|+++++
T Consensus 68 ~~lc~~~~V 76 (134)
T 2ale_A 68 PLLCEDKNV 76 (134)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhcCC
Confidence 333333333
No 364
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=23.99 E-value=1e+02 Score=20.08 Aligned_cols=84 Identities=12% Similarity=-0.028 Sum_probs=42.5
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHH
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPAD 94 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~ 94 (156)
...++-+.-+|=..--+.|......-.+-....|+|-.... .... -=...|..+.+.+++.|+.|.+..-++
T Consensus 23 ~i~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~vvlDls~v~--~iDs----sgl~~L~~~~~~~~~~g~~l~l~~~~~-- 94 (135)
T 4dgf_A 23 GVEIYEINGPFFFGVADRLKGVLDVIEETPKVFILRMRRVP--VIDA----TGMHALWEFQESCEKRGTILLLSGVSD-- 94 (135)
T ss_dssp TEEEEECCSSBSHHHHHHHTTGGGGCSSCCSEEEEECTTCS--CBCH----HHHHHHHHHHHHHHHHTCEEEEESCCH--
T ss_pred CEEEEEeeceEEehhHHHHHHHHHHhcCCCcEEEEEcCCCC--ccCH----HHHHHHHHHHHHHHHCCCEEEEEcCCH--
Confidence 34455566666555444444443321111134555543221 1111 224678888888899999999765433
Q ss_pred HHHHHHHHcCcC
Q psy6650 95 ILPKLFKEWKTT 106 (156)
Q Consensus 95 ~l~~l~~~~~~~ 106 (156)
.+.++.+..+..
T Consensus 95 ~v~~~l~~~gl~ 106 (135)
T 4dgf_A 95 RLYGALNRFGFI 106 (135)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHcCCh
Confidence 222344444443
No 365
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=23.99 E-value=1.6e+02 Score=19.46 Aligned_cols=46 Identities=4% Similarity=-0.071 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc----CeEEEcccC
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT----TCLTFEEDP 114 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~V~~~~~~ 114 (156)
..+.++=+.|++.|.++.++.+.+...+..+.+..++ +.++...+.
T Consensus 92 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 141 (214)
T 3e58_A 92 PDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEF 141 (214)
T ss_dssp TTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGC
T ss_pred chHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhheeeEeecccc
Confidence 3455677788899999999998888888888888765 556666554
No 366
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=23.98 E-value=1.6e+02 Score=19.87 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEc--------ChHHHHHHHHHHcCcCeEEE
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRG--------QPADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~V~~ 110 (156)
....|.++.+++...|+.++.+.- +..+.+.+++++++++--++
T Consensus 65 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~ 116 (183)
T 2obi_A 65 NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMF 116 (183)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEB
T ss_pred HHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEE
Confidence 457788899999988888887763 24577888999988875444
No 367
>1nfp_A LUXF gene product; flavin mononucleotide, myristate, flavoprotein; HET: FMN MYR; 1.60A {Photobacterium leiognathi} SCOP: c.1.16.2
Probab=23.61 E-value=1.7e+02 Score=20.67 Aligned_cols=38 Identities=8% Similarity=-0.131 Sum_probs=24.4
Q ss_pred EEcChHHHHH-HHH---HHcCcCeEEEcccCCchhHHHHHHH
Q psy6650 88 IRGQPADILP-KLF---KEWKTTCLTFEEDPEPFGKVRDQNI 125 (156)
Q Consensus 88 ~~g~~~~~l~-~l~---~~~~~~~V~~~~~~~~~~~~~d~~v 125 (156)
+.|.|.++.. +|. +..+++.+.+.....+....+.+.+
T Consensus 170 ~vGtpe~v~~~~l~~~~~~~G~de~~~~~~~~~~~~~~~~s~ 211 (228)
T 1nfp_A 170 AAGNFDTCLHHVAEMAQGLNNKVDFLFCFESMKDQENKKSLM 211 (228)
T ss_dssp EEECHHHHHHHHHHHHHHTTTCEEEEEECTTCCCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHH
Confidence 5799998888 664 4579999988654344333333333
No 368
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}
Probab=23.49 E-value=1.7e+02 Score=22.12 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=32.3
Q ss_pred EEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 88 IRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 88 ~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
+.....+.+.++.+..++.-.+.+-+|.+..++ ..+...|++.||.+..+..
T Consensus 165 vSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~sp 216 (312)
T 1zgd_A 165 VSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQ--KKLREFCNAHGIVLTAFSP 216 (312)
T ss_dssp EESCCHHHHHHHHTTCSSCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEEST
T ss_pred EeCCCHHHHHHHHHhCCCCceEEeeecCcccCC--HHHHHHHHHcCCEEEEecC
Confidence 344556778888776543222334444444332 4688899999999988753
No 369
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=23.46 E-value=91 Score=22.08 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcC-hHHHHHHHHH
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQ-PADILPKLFK 101 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~ 101 (156)
..+.|..+.+..++.|+.|.|..|- +.+.=.+|.+
T Consensus 37 aa~al~~m~~~a~~~Gi~l~i~sgyRs~~~Q~~Ly~ 72 (179)
T 2vo9_A 37 TSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYA 72 (179)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEECCHHHHHHHHH
Confidence 5688999999999999999999883 3333334443
No 370
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=23.40 E-value=75 Score=23.00 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEE--cChH--HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIR--GQPA--DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~--g~~~--~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
|+.+-+..+++.+++.|..+.+.. +++. ..+.+.+...+++.|++.... ... ..+.+. .+.|++++.++.
T Consensus 26 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~----~~~~~~-~~~~iPvV~~~~ 99 (289)
T 3g85_A 26 IISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS-NYD----LEYLNK-ASLTLPIILFNR 99 (289)
T ss_dssp GHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC-HHH----HHHHHH-CCCSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC-ccc----HHHHHh-ccCCCCEEEECC
Confidence 777788888899999999887654 2222 222233445588999876432 111 223232 246899998875
Q ss_pred C
Q psy6650 142 H 142 (156)
Q Consensus 142 ~ 142 (156)
.
T Consensus 100 ~ 100 (289)
T 3g85_A 100 L 100 (289)
T ss_dssp C
T ss_pred C
Confidence 4
No 371
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=23.32 E-value=1.9e+02 Score=20.06 Aligned_cols=62 Identities=15% Similarity=0.063 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCC--eEEEEEcChHHHHHHHHHH---cCcCeEEEcccCCchhHHHHHHHHHHHHhCCc
Q psy6650 72 EDLDINLRKLNS--RLFVIRGQPADILPKLFKE---WKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134 (156)
Q Consensus 72 ~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~---~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i 134 (156)
...++.+++.|. .+.+..|+..+.++.+..+ ..++.|+++.....+ ..-.+.+.+.++..|+
T Consensus 108 ~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~-~~~l~~~~~~L~pgG~ 174 (229)
T 2avd_A 108 ELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENC-SAYYERCLQLLRPGGI 174 (229)
T ss_dssp HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTH-HHHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHHHH-HHHHHHHHHHcCCCeE
Confidence 334444555564 5888899998888777653 467888887553322 2233445555544344
No 372
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=23.25 E-value=1.4e+02 Score=20.70 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCe-EEEEEcChHHHHHHHHHHcCc
Q psy6650 69 QCLEDLDINLRKLNSR-LFVIRGQPADILPKLFKEWKT 105 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 105 (156)
.++.+...+++++|.. ++.+..+......+++++.++
T Consensus 63 ~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~ 100 (171)
T 2xhf_A 63 PEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDP 100 (171)
T ss_dssp HHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence 3556666778889997 888899999999999999887
No 373
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=23.22 E-value=2.1e+02 Score=20.38 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=22.0
Q ss_pred HHHHhCCCeEEEEEc---ChHHHHHHHHHHcCcC
Q psy6650 76 INLRKLNSRLFVIRG---QPADILPKLFKEWKTT 106 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g---~~~~~l~~l~~~~~~~ 106 (156)
++|++.|+.+.+..| .+...+....++.+++
T Consensus 34 ~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 34 KKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp HHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred HHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 445667999999998 5666666666766664
No 374
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=23.22 E-value=2.7e+02 Score=21.70 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCC---eEEEEEcChHHHHHHHHHH-cCcCeEEEcccC
Q psy6650 69 QCLEDLDINLRKLNS---RLFVIRGQPADILPKLFKE-WKTTCLTFEEDP 114 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~---~L~v~~g~~~~~l~~l~~~-~~~~~V~~~~~~ 114 (156)
+++...+++++..|+ ...+..|+..+.+..+..+ ...+.|+++-.+
T Consensus 254 ~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~ 303 (396)
T 3c0k_A 254 EALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK 303 (396)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCC
Confidence 556667777777777 5888899988877766542 357778887543
No 375
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=23.22 E-value=1.7e+02 Score=23.69 Aligned_cols=37 Identities=8% Similarity=-0.004 Sum_probs=19.4
Q ss_pred CcCeEEEcccCC-chhHHHHHHHHHHHHhCCceEEEec
Q psy6650 104 KTTCLTFEEDPE-PFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 104 ~~~~V~~~~~~~-~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.+..|+++.... +......+.+++.|++.||+++...
T Consensus 48 ~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~ 85 (464)
T 3a2k_A 48 QVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQ 85 (464)
T ss_dssp BCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEE
Confidence 344555554443 3233344556666666677666553
No 376
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=23.21 E-value=1.9e+02 Score=20.00 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCC--eEEEEEcChHHHHHHHHHH--cCcCeEEEcccCCchhHHHHHHHHHHHHhCC
Q psy6650 71 LEDLDINLRKLNS--RLFVIRGQPADILPKLFKE--WKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133 (156)
Q Consensus 71 L~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~--~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~ 133 (156)
+...++.+++.|. .+.++.|+..+.++.+... ..++.|+++.... ....-.+.+.+.|+..|
T Consensus 96 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~-~~~~~l~~~~~~L~pgG 161 (223)
T 3duw_A 96 ADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ-NNPAYFEWALKLSRPGT 161 (223)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG-GHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH-HHHHHHHHHHHhcCCCc
Confidence 3444555666665 4888999998888877654 3588888876532 22233345555665445
No 377
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=23.12 E-value=1.3e+02 Score=18.62 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEE
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~ 109 (156)
...|..+.+.+++.|+.+.+..-.+ .+.++.+..+.+.++
T Consensus 60 l~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~ 99 (117)
T 1h4x_A 60 VGLVLGRMRELEAVAGRTILLNPSP--TMRKVFQFSGLGPWM 99 (117)
T ss_dssp HHHHHHHHHHHHTTTCEEEEESCCH--HHHHHHHHTTCGGGE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhCCceEE
Confidence 4667778888888999988754333 456677777877766
No 378
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=23.09 E-value=76 Score=22.92 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=24.3
Q ss_pred HHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 77 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
+|++.|+.+.+..|.+...+..+.+..+.+
T Consensus 28 ~l~~~g~~~~i~Tgr~~~~~~~~~~~~~~~ 57 (249)
T 2zos_A 28 ELKDMGFEIIFNSSKTRAEQEYYRKELEVE 57 (249)
T ss_dssp HHHHTTEEEEEBCSSCHHHHHHHHHHHTCC
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 345679999999999988888888877664
No 379
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=23.08 E-value=71 Score=22.20 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKE 102 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 102 (156)
.+.++-+.|++.|+++.++.+.+...+....+.
T Consensus 112 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~ 144 (247)
T 3dv9_A 112 GALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH 144 (247)
T ss_dssp THHHHHHHHHHTTCEEEEECSCC---CHHHHHH
T ss_pred CHHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh
Confidence 345566678888999999887665544444443
No 380
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=23.02 E-value=2.1e+02 Score=20.39 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEE-------cChH------H---HHHHHHHHcCcCeEEEc
Q psy6650 69 QCLEDLDINLRKLNSRLFVIR-------GQPA------D---ILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~-------g~~~------~---~l~~l~~~~~~~~V~~~ 111 (156)
..+.++++.+++.|+.+..+. +++. + ...+++++.|+..|.+.
T Consensus 46 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~ 104 (278)
T 1i60_A 46 HSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAV 104 (278)
T ss_dssp SCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCHHHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 346788899999999876443 2321 1 23356777899988764
No 381
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=23.01 E-value=2.7e+02 Score=21.71 Aligned_cols=17 Identities=6% Similarity=0.143 Sum_probs=7.8
Q ss_pred HHHHHHHhCC-CeEEEEE
Q psy6650 73 DLDINLRKLN-SRLFVIR 89 (156)
Q Consensus 73 ~L~~~L~~~g-~~L~v~~ 89 (156)
+|.+.++++| ....|+.
T Consensus 23 ~l~~~l~~~g~~~~livt 40 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVT 40 (387)
T ss_dssp GHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEE
Confidence 3444444455 3444444
No 382
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=23.00 E-value=1.7e+02 Score=21.96 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=27.9
Q ss_pred HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 95 ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 95 ~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.|.+++++.++..||++....+... +.|.+..++.|+++..++
T Consensus 203 ~l~~~ik~~~v~~if~e~~~~~~~~---~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 203 ETVNLIIDHNIKAIFTESTTNPERM---KKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp HHHHHHHHHTCCEEECBTTSCTHHH---HHHHHHHHTTSCCCEEET
T ss_pred HHHHHHHHcCCCEEEEeCCCChHHH---HHHHHHHHhcCCceEEec
Confidence 3555667789999988776654332 344455556788887765
No 383
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=22.94 E-value=1.3e+02 Score=20.56 Aligned_cols=37 Identities=3% Similarity=0.003 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHc
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEW 103 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 103 (156)
....|.++.+++...|+.++.+.-++.+.+.++++++
T Consensus 64 ~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~ 100 (195)
T 2bmx_A 64 EIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQH 100 (195)
T ss_dssp HHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHh
Confidence 4567888899998889999888888877888887775
No 384
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=22.89 E-value=2.5e+02 Score=21.26 Aligned_cols=102 Identities=6% Similarity=-0.046 Sum_probs=52.9
Q ss_pred CCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcC----hHHHHHHH---HHHcCcCeEEEcc
Q psy6650 40 CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQ----PADILPKL---FKEWKTTCLTFEE 112 (156)
Q Consensus 40 ~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l---~~~~~~~~V~~~~ 112 (156)
+-+.+.+|+--.+.....+.+.- ....++.+.+.-+..++.|....+-..+ +.+.+.++ +.+.|++.|+..+
T Consensus 93 g~~~v~i~~~~Sd~~~~~nl~~s-~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~D 171 (293)
T 3ewb_X 93 VSPQIHIFLATSDVHMEYKLKMS-RAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPD 171 (293)
T ss_dssp SSEEEEEEEECSHHHHHHTTCCC-HHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCEEEEEecCcHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 44556666543222111122222 3456677777777778888876654322 23333333 3457999998887
Q ss_pred cCCchhHHHHHHHHHHHHh-CC------ceEEEecCC
Q psy6650 113 DPEPFGKVRDQNIMTLCRE-LN------IEVIARVSH 142 (156)
Q Consensus 113 ~~~~~~~~~d~~v~~~l~~-~~------i~~~~~~~~ 142 (156)
..+.-......++-+.+++ .+ +.+|.+++.
T Consensus 172 T~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~ 208 (293)
T 3ewb_X 172 TVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDL 208 (293)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCc
Confidence 7654433333333333332 22 556666554
No 385
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=22.83 E-value=99 Score=17.26 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKE 102 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 102 (156)
.+.+|++.|+++|.+ ..|.-.+.+.+|.+.
T Consensus 14 kV~eLK~eLk~RgL~---~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 14 KVNELREELQRRGLD---TRGLKAELAERLQAA 43 (50)
T ss_dssp CHHHHHHHHHHTTCC---CCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCC---CCCcHHHHHHHHHHH
Confidence 468999999999976 367766666666553
No 386
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=22.78 E-value=1.4e+02 Score=21.66 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHc
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEW 103 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 103 (156)
--+..|.++.+++++.|+.++.+..++.+...++++++
T Consensus 95 ~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~ 132 (240)
T 3qpm_A 95 TEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITP 132 (240)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH
Confidence 34678899999999999999988888888888888764
No 387
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=22.75 E-value=2.3e+02 Score=20.89 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++. +.+..+. ..+++.|+ ... .... + .+.+.|++++.+
T Consensus 73 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI-~~~-~~~~----~----~l~~~~iPvV~~ 141 (330)
T 3ctp_A 73 PFFNQMASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQ-SHRVAGII-ASR-SQCE----D----EYANIDIPVVAF 141 (330)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEE-EET-CCCS----G----GGTTCCSCEEEE
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH-hCCCCEEE-ECC-CCCH----H----HHHhcCCCEEEE
Confidence 47778888899999999999988764 332 2344444 45788888 432 1111 1 134568999888
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 142 ~~~ 144 (330)
T 3ctp_A 142 ENH 144 (330)
T ss_dssp SSC
T ss_pred ecc
Confidence 653
No 388
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=22.71 E-value=1.3e+02 Score=19.40 Aligned_cols=50 Identities=8% Similarity=-0.040 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHcCcC---eEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCee
Q psy6650 92 PADILPKLFKEWKTT---CLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTL 144 (156)
Q Consensus 92 ~~~~l~~l~~~~~~~---~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L 144 (156)
-.....++.++.++. -...+-...+.. .+.+.+......++...+++..+
T Consensus 33 ~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~---~~~l~~~sg~~tvP~vfI~g~~i 85 (121)
T 3gx8_A 33 FSRATIGLLGNQGVDPAKFAAYNVLEDPEL---REGIKEFSEWPTIPQLYVNKEFI 85 (121)
T ss_dssp HHHHHHHHHHHHTBCGGGEEEEECTTCHHH---HHHHHHHHTCCSSCEEEETTEEE
T ss_pred cHHHHHHHHHHcCCCcceEEEEEecCCHHH---HHHHHHHhCCCCCCeEEECCEEE
Confidence 345666777777776 333333322221 12233322234577776666554
No 389
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=22.67 E-value=95 Score=18.90 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=48.9
Q ss_pred CeEEEEecCCCCccccHHHHHHHhc---CCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcC
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKG---CTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQ 91 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~---~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~ 91 (156)
...++=+..+|-...-+.|..+... ..+. ...++|-.... .... --...|..+.+.+++.|+.+.+..-.
T Consensus 13 ~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~-~~vvlDls~v~--~iDs----sgl~~L~~~~~~~~~~g~~l~l~~~~ 85 (110)
T 1sbo_A 13 DKAIVRVQGDIDAYNSSELKEQLRNFISTTSK-KKIVLDLSSVS--YMDS----AGLGTLVVILKDAKINGKEFILSSLK 85 (110)
T ss_dssp SEEEEEEESCBSTTTTTHHHHHHHTHHHHCSC-SEEEEECTTCC--CBCH----HHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred CEEEEEEeeEEccccHHHHHHHHHHHHhcCCC-cEEEEECCCCc--EEcc----HHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4456667788887776777666542 1111 12356643322 1121 22466777888888899998875433
Q ss_pred hHHHHHHHHHHcCcCeE
Q psy6650 92 PADILPKLFKEWKTTCL 108 (156)
Q Consensus 92 ~~~~l~~l~~~~~~~~V 108 (156)
+ .+.++.+..+...+
T Consensus 86 ~--~v~~~l~~~gl~~~ 100 (110)
T 1sbo_A 86 E--SISRILKLTHLDKI 100 (110)
T ss_dssp H--HHHHHHHHTTCGGG
T ss_pred H--HHHHHHHHhCccce
Confidence 3 45566666666543
No 390
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.58 E-value=2.4e+02 Score=21.02 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCeEEEEEc-ChHHHHHHHHHHcCcCeEEE
Q psy6650 71 LEDLDINLRKLNSRLFVIRG-QPADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~V~~ 110 (156)
|.+|.+.+++.|++.++..- .+......++++.++..+..
T Consensus 215 l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 255 (284)
T 3cx3_A 215 LTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTL 255 (284)
T ss_dssp HHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEe
Confidence 44555555555666555432 22344555565666655544
No 391
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=22.55 E-value=38 Score=26.12 Aligned_cols=71 Identities=10% Similarity=0.143 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCeEEE-EEcChHHHH---HHHHHHcCcC-eEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 69 QCLEDLDINLRKLNSRLFV-IRGQPADIL---PKLFKEWKTT-CLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v-~~g~~~~~l---~~l~~~~~~~-~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+.+..|.+ |.+.|.--.+ +..-....+ .++++..+.. -++.+-+|.+..+..+..+...|++.||.+..+.
T Consensus 159 e~~~al~~-l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~~~~~~~l~~~~~~~gi~v~a~s 234 (346)
T 1lqa_A 159 DTLDALAE-YQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYS 234 (346)
T ss_dssp HHHHHHHH-HHHTTSEEEEEEESCCHHHHHHHHHHHHHHTCCCCCEEEEECBTTBCTHHHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHH-HHHcCCeEEEEecCCCHHHHHHHHHHHHHcCCCCceEEeccCChhhchhHHHHHHHHHHcCCeEEEec
Confidence 44444432 3444643333 233334333 3444444432 2344455666555445678899999999998874
No 392
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=22.46 E-value=1.3e+02 Score=20.75 Aligned_cols=37 Identities=3% Similarity=-0.148 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHc
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEW 103 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 103 (156)
....|.++.+++++.|+.++.+.-++.+.+.++++++
T Consensus 55 ~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~ 91 (202)
T 1uul_A 55 EICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIE 91 (202)
T ss_dssp HHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 3477899999999889999988888777777777765
No 393
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=22.39 E-value=1.1e+02 Score=21.61 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHc
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEW 103 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 103 (156)
--+..|.++.+++++.|+.++.+.-+..+.+.+++++.
T Consensus 66 ~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~ 103 (211)
T 2pn8_A 66 TEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTP 103 (211)
T ss_dssp HHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHh
Confidence 34577889999999899999888888888888888876
No 394
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=22.38 E-value=1e+02 Score=19.24 Aligned_cols=85 Identities=11% Similarity=-0.016 Sum_probs=47.1
Q ss_pred CeEEEEecCCCCccccHHHHHHHhcC--CcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcCh
Q psy6650 15 KHMVHWFRKGLRMHDNPSLREGLKGC--TTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQP 92 (156)
Q Consensus 15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~--~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~ 92 (156)
...++=+.-+|-...-+.|..++... ..- ..++|-.... ... .-=...|..+.+.+++.|+.+.+..-.+
T Consensus 13 ~~~v~~l~G~ld~~~~~~l~~~l~~~~~~~~--~vvlDls~v~--~iD----ssgl~~L~~~~~~~~~~g~~l~l~~~~~ 84 (117)
T 4hyl_A 13 GIDIITLHGHLDTRSSPAVQAAVLPRVTAKG--KMILDLREVS--YMS----SAGLRVLLSLYRHTSNQQGALVLVGVSE 84 (117)
T ss_dssp TEEEEEEEEEECSSSHHHHHHHHGGGCCTTC--EEEEEEEEEE--EEC----HHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CEEEEEEEeEEcchhHHHHHHHHHHHHccCC--eEEEECCCCc--EEc----HHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 33455556677666667777766431 111 3444432111 111 1223667778888888999988765433
Q ss_pred HHHHHHHHHHcCcCeEE
Q psy6650 93 ADILPKLFKEWKTTCLT 109 (156)
Q Consensus 93 ~~~l~~l~~~~~~~~V~ 109 (156)
.+.++.+..+.+.++
T Consensus 85 --~v~~~l~~~gl~~~~ 99 (117)
T 4hyl_A 85 --EIRDTMEITGFWNFF 99 (117)
T ss_dssp --HHHHHHHHHTCGGGC
T ss_pred --HHHHHHHHhCcccee
Confidence 344566666666543
No 395
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=22.35 E-value=90 Score=23.98 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEE-cChHHHHHHHHHHcCcCeEEEc
Q psy6650 69 QCLEDLDINLRKLNSRLFVIR-GQPADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~V~~~ 111 (156)
+.|.+|.+.+++.|++.++.. ..+......|+++.++..+..+
T Consensus 226 ~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~~l~ 269 (312)
T 2o1e_A 226 ASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTEVLN 269 (312)
T ss_dssp HHHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEECCC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcEEEec
Confidence 446778888888999988765 3445677888888888876653
No 396
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=22.21 E-value=2.5e+02 Score=21.08 Aligned_cols=111 Identities=6% Similarity=-0.006 Sum_probs=58.5
Q ss_pred HHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEE----c------ChHHHHHHH--
Q psy6650 32 SLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIR----G------QPADILPKL-- 99 (156)
Q Consensus 32 aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~----g------~~~~~l~~l-- 99 (156)
.+..|.+.+-+.+.+|+--.+.....+.+. .....++.+.+.-+.+++.|..+.+-- | .+.+.+.++
T Consensus 85 ~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~-~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (298)
T 2cw6_A 85 GFEAAVAAGAKEVVIFGAASELFTKKNINC-SIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTK 163 (298)
T ss_dssp HHHHHHHTTCSEEEEEEESCHHHHHHHHSC-CHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHH
T ss_pred hHHHHHHCCCCEEEEEecCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHH
Confidence 466666666667677664322110001111 134555667777777888898865321 1 123444444
Q ss_pred -HHHcCcCeEEEcccCCchhHHHHHHHHHHHHh-C---CceEEEecCCe
Q psy6650 100 -FKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE-L---NIEVIARVSHT 143 (156)
Q Consensus 100 -~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~-~---~i~~~~~~~~~ 143 (156)
+.+.+++.|+..+..+.-......++-+.+.+ . .+.+|.+++.-
T Consensus 164 ~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~G 212 (298)
T 2cw6_A 164 KFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYG 212 (298)
T ss_dssp HHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTS
T ss_pred HHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence 45679999988766654433333333333322 2 36667666553
No 397
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=22.13 E-value=1.1e+02 Score=24.33 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcC
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTT 106 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 106 (156)
++.++.++=+.|++.|+++.|..+.+...+..+.+..++.
T Consensus 216 l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~ 255 (384)
T 1qyi_A 216 PVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLL 255 (384)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCG
T ss_pred cCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCCh
Confidence 4567778888888899999999998887777777776653
No 398
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=22.10 E-value=2.5e+02 Score=21.03 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcC-hHHHHHHHHHHcCcCeEEEc
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQ-PADILPKLFKEWKTTCLTFE 111 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~~~V~~~ 111 (156)
+.|.+|.+.+++.|++.++..-. +......++++.++..+..+
T Consensus 215 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 215 RQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEec
Confidence 45778888889999999888643 44667788999999877654
No 399
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=22.08 E-value=1.7e+02 Score=19.71 Aligned_cols=41 Identities=7% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcC--------hHHHHHHHHHH-cCcCe
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQ--------PADILPKLFKE-WKTTC 107 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~~~-~~~~~ 107 (156)
....|.++.+++...|+.++.+..+ ..+.+.+++++ ++++-
T Consensus 67 ~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~ 116 (181)
T 2p31_A 67 HYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSF 116 (181)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCc
Confidence 4567889999999888888877642 46678888888 77653
No 400
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=22.01 E-value=1.7e+02 Score=18.96 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=31.1
Q ss_pred EEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 87 VIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 87 v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
+..|.- +++ +.+++-.+.-|+...+..+. ....+...|...+|+++.+
T Consensus 27 ~~~G~~-~t~-kai~~gkakLVilA~D~~~~---~~~~i~~~c~~~~ipv~~~ 74 (112)
T 3iz5_f 27 YTLGYK-TVL-KTLRSSLGKLIILANNCPPL---RKSEIETYAMLAKISVHHF 74 (112)
T ss_dssp EEESHH-HHH-HHHHTTCCSEEEECSCCCHH---HHHHHHHHHHHTTCCEECC
T ss_pred eeECHH-HHH-HHHHcCCceEEEEeCCCCHH---HHHHHHHHHHHcCCcEEEe
Confidence 455632 233 34455578888888887653 3455667777788888877
No 401
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=22.00 E-value=2.3e+02 Score=20.61 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEE---cChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 66 FLLQCLEDLDINLRKLNSRLFVIR---GQPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
|+.+-+..+++.+++.|..+.+.. +++.. .+..++. .+++.|++......... ..+ +.+.+.|++++.+
T Consensus 14 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~---~~~-~~~~~~~iPvV~~ 88 (313)
T 2h3h_A 14 YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA-EGVNGIAIAPSDPTAVI---PTI-KKALEMGIPVVTL 88 (313)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH-TTCSEEEECCSSTTTTH---HHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHH---HHH-HHHHHCCCeEEEe
Confidence 777788888888999999988864 34433 3444443 57898877533221111 122 3344579999988
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 89 ~~~ 91 (313)
T 2h3h_A 89 DTD 91 (313)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 402
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=21.74 E-value=2.3e+02 Score=20.48 Aligned_cols=55 Identities=7% Similarity=0.023 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHHHHHHhCCCeEEEEEc--------ChHHHHHHHHHHcCcCeEEEcccCCc
Q psy6650 62 NKWRFLLQCLEDLDINLRKLNSRLFVIRG--------QPADILPKLFKEWKTTCLTFEEDPEP 116 (156)
Q Consensus 62 ~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~V~~~~~~~~ 116 (156)
..+..+.+.|..+.+..++.|+.|.+-.- .+.+.+.+++++.+-..|-+.-+.+.
T Consensus 139 ~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~ll~~v~~~~vg~~~D~~h 201 (287)
T 3kws_A 139 ETRDFLCEQFNEMGTFAAQHGTSVIFEPLNRKECFYLRQVADAASLCRDINNPGVRCMGDFWH 201 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHHHHHHHHHHHCCTTEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCeeEEeehHH
Confidence 44667889999999999999999887622 34566778999877666665555433
No 403
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=21.72 E-value=1.1e+02 Score=23.58 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=44.7
Q ss_pred EEEEeCCCCcCCCCCCcc-hHHHHHHHHHHHHHHHHhC----CCeEEEEEcChHHHHHHHHHHcCcCeEEEccc
Q psy6650 45 CVFILDPWFAGSSNVGIN-KWRFLLQCLEDLDINLRKL----NSRLFVIRGQPADILPKLFKEWKTTCLTFEED 113 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~----g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~ 113 (156)
+++++|++. . ..++. -.+|....++.+-+.+++. |++.+...|.....++.++ +.+++.|-++..
T Consensus 203 ~i~i~d~~~--~-~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~~~g~~~~l~~l~-~~g~d~i~~d~~ 272 (354)
T 3cyv_A 203 AVMIFDTWG--G-VLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMA-ETGCDALGLDWT 272 (354)
T ss_dssp EEEEECTTG--G-GSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEECTTTTTTHHHHH-TTSCSEEECCTT
T ss_pred EEEEeCCcc--c-cCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEECCCHHHHHHHHH-hcCCCEEEeCCC
Confidence 577888742 1 23432 2478889999998888877 4776666676666677665 578998887543
No 404
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=21.71 E-value=1.7e+02 Score=19.77 Aligned_cols=43 Identities=5% Similarity=0.046 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhCCCe--EEEEE----cChHHHHHHHHHHcCcCeE
Q psy6650 66 FLLQCLEDLDINLRKLNSR--LFVIR----GQPADILPKLFKEWKTTCL 108 (156)
Q Consensus 66 Fl~~sL~~L~~~L~~~g~~--L~v~~----g~~~~~l~~l~~~~~~~~V 108 (156)
-....|.++++.+.+.|.. ++.+. .++.+.+.+++++++++..
T Consensus 50 ~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~ 98 (170)
T 4hde_A 50 PMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTS 98 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCT
T ss_pred HHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCC
Confidence 4567788888888877754 44343 3567889999999877643
No 405
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=21.55 E-value=1.7e+02 Score=22.05 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=33.1
Q ss_pred CeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCee
Q psy6650 83 SRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTL 144 (156)
Q Consensus 83 ~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L 144 (156)
..+.+++|.-. +...|.....+..||+.+..... ..+.+.+.+.++++..+....|
T Consensus 32 ~g~flveG~~~-V~eaL~~~~~i~~l~~~~~~~~~-----~~l~~~~~~~~~~v~~v~~~~l 87 (277)
T 3nk6_A 32 IKTTLIEDTEP-LMECIRAGVQFIEVYGSSGTPLD-----PALLDLCRQREIPVRLIDVSIV 87 (277)
T ss_dssp -CEEEEESHHH-HHHHHHTTCCEEEEEEETTSCCC-----HHHHHHHHHTTCCEEEECHHHH
T ss_pred cCCEEEEeHHH-HHHHHhCCCCeEEEEEeCCccCc-----HHHHHHHHhcCCcEEEECHHHH
Confidence 45778888542 33334445578889998775433 2344445556888877655433
No 406
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=21.27 E-value=2.5e+02 Score=21.53 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=42.3
Q ss_pred EEEEeCCCCcCCCCCCcch-HHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCC
Q psy6650 45 CVFILDPWFAGSSNVGINK-WRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPE 115 (156)
Q Consensus 45 ~vfi~d~~~~~~~~~~~~r-~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~ 115 (156)
+++++|++- +..-.++.- .+|....++.+-+.++ +.+++...|+....++.+++ .+++.|-++....
T Consensus 206 ~i~i~D~~a-~~~~lsp~~f~~f~~p~~k~i~~~~~--~~~iih~~g~~~~~l~~~~~-~g~d~i~~d~~~~ 273 (348)
T 4ay7_A 206 VIAIADPVA-SPDLMSPDSFRQFLKSRLQKFASSVN--SVTVLHICGNVNPILSDMAD-CGFEGLSVEEKIG 273 (348)
T ss_dssp EEEEECGGG-STTTSCHHHHHHHHHHHHHHHHHHSS--SEEEEECCSCCHHHHHHHHT-SCCSEEECCGGGC
T ss_pred cceeecccc-ccccCCHHHHHHHhhHHHHHHHhhcc--CCcEEEecCCcHHHHHHHHH-hccccccccchhh
Confidence 678888742 111234332 3577777777777664 34555566887778877664 7899887765443
No 407
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=21.26 E-value=78 Score=22.39 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHc-CcCeEEEccc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEW-KTTCLTFEED 113 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~V~~~~~ 113 (156)
.+.++=+.|++.|+++.|+.+.+...+..+++.. +.+.|+.+..
T Consensus 81 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~~l~~~~~v~~~~~ 125 (236)
T 2fea_A 81 GFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHA 125 (236)
T ss_dssp THHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCGGGEEEEEE
T ss_pred cHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHhcCCCCCeEEeeee
Confidence 4556667788889999999988877777777632 3356776543
No 408
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=21.26 E-value=1.9e+02 Score=20.46 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=36.1
Q ss_pred CCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 81 LNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 81 ~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
.|..|++-.-.-......|++ .+|..||+-..|.... .. ..+.+++.||++..+..
T Consensus 121 ~g~tLYvT~ePC~~Ca~aIi~-aGI~rVvy~~~~~~~~-~~---~~~~l~~aGI~v~~~~~ 176 (193)
T 1vq2_A 121 EGATMYVTLSPCPDCAKAIAQ-SGIKKLVYCETYDKNK-PG---WDDILRNAGIEVFNVPK 176 (193)
T ss_dssp TTCEEEEEECCCHHHHHHHHH-HTCCEEEEEECCTTCC-TT---TTHHHHHTTCEEEECCG
T ss_pred CCeEEEEeCCCcHHHHHHHHH-hCCCEEEEecCCCCcc-hH---HHHHHHHCCCEEEEeCH
Confidence 477888876665666655544 5999998876654332 11 12457778999987643
No 409
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=21.19 E-value=1.9e+02 Score=20.79 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=11.7
Q ss_pred HHHHHHHhCCCeEEEEEc
Q psy6650 73 DLDINLRKLNSRLFVIRG 90 (156)
Q Consensus 73 ~L~~~L~~~g~~L~v~~g 90 (156)
+|.+.|+++|+.=+++.|
T Consensus 144 ~L~~~L~~~gi~~l~i~G 161 (216)
T 3v8e_A 144 DMNKYLEKHHTDEVYIVG 161 (216)
T ss_dssp SHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHhCCCCEEEEEE
Confidence 455566777777666665
No 410
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.17 E-value=2.4e+02 Score=20.45 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEc-C---hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCee
Q psy6650 70 CLEDLDINLRKLNSRLFVIRG-Q---PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTL 144 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g-~---~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L 144 (156)
-+..+++.|++.|+++..... + ..+.+.+|.. ++++||+..+... ....+.+.+.....++.+..|++..+
T Consensus 150 r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~--~~dai~~~~D~~a--~g~~~~l~~~~~~~~i~vig~d~~~~ 224 (295)
T 3lft_A 150 QVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTS--KVDAIWVPIDNTI--ASGFPTVVSSNQSSKKPIYPSATAMV 224 (295)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHTT--TCSEEEECSCHHH--HHTHHHHHHHTTTTCCCEEESSHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHHh--cCCEEEECCchhH--HHHHHHHHHHHHHcCCCEEeCCHHHH
Confidence 345666777888988765432 2 2234444442 6899998765322 12223344443345788888876443
No 411
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=21.16 E-value=2.3e+02 Score=20.14 Aligned_cols=36 Identities=3% Similarity=0.092 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCeEEEEEc---ChHHHHHHHHHHcCcC
Q psy6650 71 LEDLDINLRKLNSRLFVIRG---QPADILPKLFKEWKTT 106 (156)
Q Consensus 71 L~~L~~~L~~~g~~L~v~~g---~~~~~l~~l~~~~~~~ 106 (156)
-.+.=++|++.|+.+.+..| .+...+....++.++.
T Consensus 27 ~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 27 ACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp HHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 34444567788999999977 6666666677776664
No 412
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=21.14 E-value=2.3e+02 Score=20.34 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHhCCC--eEEEEEcChHHHHHHHHHH---cCcCeEEEcccCCchhHHHHHHHHHHHHhCCc
Q psy6650 78 LRKLNS--RLFVIRGQPADILPKLFKE---WKTTCLTFEEDPEPFGKVRDQNIMTLCRELNI 134 (156)
Q Consensus 78 L~~~g~--~L~v~~g~~~~~l~~l~~~---~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i 134 (156)
+++.|. .+.++.|+..+.++.+..+ ..++.|+++.....+ ..-.+.+.+.|+..|+
T Consensus 105 ~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~~~-~~~l~~~~~~LkpGG~ 165 (242)
T 3r3h_A 105 WREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNY-LNYYELALKLVTPKGL 165 (242)
T ss_dssp HHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGGGH-HHHHHHHHHHEEEEEE
T ss_pred HHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChHHh-HHHHHHHHHhcCCCeE
Confidence 334444 4788889888888777653 457778877653222 2223444455543344
No 413
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=21.13 E-value=2.3e+02 Score=20.23 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEc--ChHH---HHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRG--QPAD---ILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++......... ..+ +.+.+.|++++.+
T Consensus 15 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~~---~~~-~~~~~~~iPvV~~ 89 (290)
T 2fn9_A 15 PWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAII-AAGYDAIIFNPTDADGSI---ANV-KRAKEAGIPVFCV 89 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSCTTTTH---HHH-HHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHHHH---HHH-HHHHHCCCeEEEE
Confidence 47778888899999999999888764 3332 344444 358998877532211111 122 3344568999888
Q ss_pred cCC
Q psy6650 140 VSH 142 (156)
Q Consensus 140 ~~~ 142 (156)
+..
T Consensus 90 ~~~ 92 (290)
T 2fn9_A 90 DRG 92 (290)
T ss_dssp SSC
T ss_pred ecC
Confidence 653
No 414
>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Probab=21.12 E-value=1.4e+02 Score=20.13 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEE
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLT 109 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~ 109 (156)
.+.++-+.|++. .++.++.+.+...+..+++..++...+
T Consensus 73 g~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~gl~~~f 111 (206)
T 1rku_A 73 GAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLL 111 (206)
T ss_dssp THHHHHHHHHTT-SEEEEEEEEEHHHHHHHHHHTTCCCEE
T ss_pred cHHHHHHHHHhc-CcEEEEECChHHHHHHHHHHcCCccee
Confidence 344555667777 899999888888888888888876544
No 415
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=21.07 E-value=2.7e+02 Score=20.98 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEc-ChHHHHHHHHHHcCcCeE--EEc
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRG-QPADILPKLFKEWKTTCL--TFE 111 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~V--~~~ 111 (156)
+.|.+|.+.+++.|++.++..- .+...+..++++.++..+ .++
T Consensus 219 ~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~~~~~ 264 (294)
T 3hh8_A 219 DQISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIYSEIFT 264 (294)
T ss_dssp HHHHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCCEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHhCCcEEeeecC
Confidence 4567888888899998877764 344677889999999887 554
No 416
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=21.00 E-value=2e+02 Score=22.56 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcC--hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQ--PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~--~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
.+.+..|++.|.++|.++-|.-|+ ....+.+++++-.++.|...-.. . ....-.++.+.+++.|+.+..
T Consensus 240 ~~~~~~l~~~l~~~g~~iPIa~dE~~~~~~~~~~i~~~~~d~v~ik~~~-~-Git~~~~i~~~A~~~gi~~~~ 310 (392)
T 3p3b_A 240 EALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIW-P-GFTHWMELGEKLDAHGLRSAP 310 (392)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCSSCCTTHHHHHHTTSCCEECCBTTT-B-CHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHhhccCCCCccEEecCCCCHHHHHHHHHcCCCCEEEeCccc-c-CHHHHHHHHHHHHHcCCEEEe
Confidence 366777777776666555566555 22456677776556555544322 2 444455666777777877654
No 417
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=20.98 E-value=2.5e+02 Score=20.58 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=39.7
Q ss_pred HHHhCCCeEEEEEcChHHHHHHHHHHcCcC---------------eEEEcccCCchhHHHHHHHHHHHHh--CCceEEEe
Q psy6650 77 NLRKLNSRLFVIRGQPADILPKLFKEWKTT---------------CLTFEEDPEPFGKVRDQNIMTLCRE--LNIEVIAR 139 (156)
Q Consensus 77 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~---------------~V~~~~~~~~~~~~~d~~v~~~l~~--~~i~~~~~ 139 (156)
+|++.|+.+.+..|.+...+..+....+.. .+.+... .......++.+.+.+ .++.+..+
T Consensus 66 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~i~~~~---l~~~~~~~i~~~~~~~~~~~~~~~~ 142 (304)
T 3l7y_A 66 QLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVF---QQREDIASIIYFIEEKYPQAVIALS 142 (304)
T ss_dssp HHHHTTCEEEEECSSCHHHHHTTCTTTGGGSEEEEGGGTEEEETTEEEEECC---CCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHHhCCCCcEEeCCCcEEEECCEEEEEec---CCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345679999999999988887777665541 1111221 123334556666665 57777666
Q ss_pred cCCeee
Q psy6650 140 VSHTLY 145 (156)
Q Consensus 140 ~~~~L~ 145 (156)
.....+
T Consensus 143 ~~~~~~ 148 (304)
T 3l7y_A 143 GEKKGY 148 (304)
T ss_dssp ESSCEE
T ss_pred cCCCEe
Confidence 555433
No 418
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=20.87 E-value=91 Score=24.53 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=47.3
Q ss_pred ecCCCCccccHHHHHHHhcC-----CcceEEEEeCCCCcC---CCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcCh
Q psy6650 21 FRKGLRMHDNPSLREGLKGC-----TTFRCVFILDPWFAG---SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQP 92 (156)
Q Consensus 21 fr~DLRl~DN~aL~~A~~~~-----~~vi~vfi~d~~~~~---~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~ 92 (156)
|+|=-|+.-|+++....++. +-+.|+||.+..... ..-.|-.| +=.+.|.+--+++.++|++-+++.|-|
T Consensus 4 ~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r--~sid~l~~~~~~~~~lGi~~v~LFgvp 81 (323)
T 1l6s_A 4 IQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMR--IPEKHLAREIERIANAGIRSVMTFGIS 81 (323)
T ss_dssp SCCGGGGGSSHHHHHHHCCCCCCGGGEEEEEEEETTCSSCEECTTSTTCEE--EEGGGHHHHHHHHHHHTCCEEEEEEEC
T ss_pred cccCCccCCChHHHHHhhcCcCCHHHceeeEEEecCCCCccccCCCCCcee--eCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 56677888899998887542 458999999864321 11224444 334666777777888999988887654
No 419
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=20.83 E-value=2.6e+02 Score=20.60 Aligned_cols=68 Identities=7% Similarity=-0.048 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCeEEEE-E-cChHHHHHHHHHHc-----CcCeEEEcccCCchhHHHHHHHHHHHHhCCc----eEEE
Q psy6650 70 CLEDLDINLRKLNSRLFVI-R-GQPADILPKLFKEW-----KTTCLTFEEDPEPFGKVRDQNIMTLCRELNI----EVIA 138 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~-~-g~~~~~l~~l~~~~-----~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i----~~~~ 138 (156)
++.-|+..+++.| .+.|. . |....++..|+.+. ++..|+++..+.+.+ ..+-+.+.+++.|+ +++.
T Consensus 30 ~~~~l~~a~~~~~-~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDtg~~~~e--t~~~v~~~~~~~gl~~~~~l~v 106 (261)
T 2oq2_A 30 PQEIIAWSIVTFP-HLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQ--TLTLKNEIEKKYYQPKNQTIHV 106 (261)
T ss_dssp HHHHHHHHHHHCS-SEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHH--HHHHHHHHHHHHTGGGTCCCEE
T ss_pred HHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecCCCCCHH--HHHHHHHHHHHhCCCCCCCeEE
Confidence 4445555566666 44443 4 44456777777764 356777877765433 33445556666688 7766
Q ss_pred ec
Q psy6650 139 RV 140 (156)
Q Consensus 139 ~~ 140 (156)
+.
T Consensus 107 ~~ 108 (261)
T 2oq2_A 107 YK 108 (261)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 420
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=20.83 E-value=2.3e+02 Score=19.98 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCeEEEEEcChHH-HHHHH---HHHcCcCeEEEcccC-CchhHHHHHHHHHHHHhCCceEEEe
Q psy6650 72 EDLDINLRKLNSRLFVIRGQPAD-ILPKL---FKEWKTTCLTFEEDP-EPFGKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 72 ~~L~~~L~~~g~~L~v~~g~~~~-~l~~l---~~~~~~~~V~~~~~~-~~~~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
.+|...|+++|+.=+++.|-..+ ++..- +...|...++..+.. +..+...+..+.. +...|+.+.+.
T Consensus 115 t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~V~vv~Da~as~~~~~h~~al~~-m~~~g~~v~tt 186 (204)
T 3hu5_A 115 TECDMLLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDACSARTPGVAESNIND-MRAMGITCVPL 186 (204)
T ss_dssp SSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHH-HHHHTCEEECG
T ss_pred cCHHHHHHhCCCCeEEEeeeccchHHHHHHHHHHHCCCEEEEehhhhCCCCHHHHHHHHHH-HHHhCCEEEEH
Confidence 36788888889987777763221 11111 112455555444433 3334444444443 34457766544
No 421
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=20.81 E-value=1.8e+02 Score=18.89 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 99 LFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 99 l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
.++.-.+.-|+...+.+|.+.. ..+...|.+.||++..+.
T Consensus 40 ai~~gka~lViiA~D~~p~~~~--~~l~~lc~~~~VP~~~v~ 79 (120)
T 1xbi_A 40 AVERGIAKLVIIAEDVKPEEVV--AHLPYLCEEKGIPYAYVA 79 (120)
T ss_dssp HHHHTCCSEEEEESCCSSGGGT--TTHHHHHHHHTCCEEEES
T ss_pred HHHcCCceEEEEcCCCChHHHH--HHHHHHHHhcCCCEEEeC
Confidence 3444455556666555554311 233444555566654443
No 422
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.80 E-value=2.7e+02 Score=20.77 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcC-hHHHHHHHHHHcCcCeEEE
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQ-PADILPKLFKEWKTTCLTF 110 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~~~V~~ 110 (156)
.|.+|.+.+++.|++.++..-. +......++++.++..+..
T Consensus 211 ~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 252 (284)
T 2prs_A 211 RLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTL 252 (284)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEe
Confidence 4566666667777777766532 3455666777777765544
No 423
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=20.78 E-value=1.6e+02 Score=23.19 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHhCCCeEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhH-HHHHHHHHHHHhCCceEEEecCC
Q psy6650 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK-VRDQNIMTLCRELNIEVIARVSH 142 (156)
Q Consensus 76 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~-~~d~~v~~~l~~~~i~~~~~~~~ 142 (156)
.-++..|.....+..+..+.|.+.++. +...|+++....|... .-.++|.+.|++.|+.++.-+.+
T Consensus 139 ~~~~~~g~~~~~v~~~d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~ 205 (414)
T 3ndn_A 139 EILPRWGVQTVFVDGDDLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVF 205 (414)
T ss_dssp THHHHTTCEEEEECTTCHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHHcCcEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCC
Confidence 335567888877766555666666554 4566775433322211 11356778888889877765544
No 424
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=20.78 E-value=2.2e+02 Score=21.58 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=39.2
Q ss_pred eEEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecC
Q psy6650 84 RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141 (156)
Q Consensus 84 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~ 141 (156)
+..+..| ...+..+++.-.+.-|+...+++|.|.- .-|-..|.+.||++..+.+
T Consensus 125 p~~lk~G--vneVTklVE~kKAqLVVIA~DVdPiElV--~fLPaLC~k~gVPY~iVk~ 178 (258)
T 3iz5_H 125 PIVVKYG--LNHVTYLIEQSKAQLVVIAHDVDPIELV--VWLPALCRKMEVPYCIVKG 178 (258)
T ss_dssp CCCEEES--HHHHHHHHHTTCEEEEEEESCCSSTHHH--HHHHHHHTTTTCCEEEESC
T ss_pred Cceeecc--cHHHHHHHHcCcceEEEEeCCCChHHHH--hHHHHHHHhcCCCeEEECC
Confidence 4666677 3345567888788888888888888654 3466778888988887765
No 425
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=20.75 E-value=2.6e+02 Score=20.67 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHcCcCeE-EEcccCCch-----hHHHHHHHHHHHHhCCceEEEe
Q psy6650 92 PADILPKLFKEWKTTCL-TFEEDPEPF-----GKVRDQNIMTLCRELNIEVIAR 139 (156)
Q Consensus 92 ~~~~l~~l~~~~~~~~V-~~~~~~~~~-----~~~~d~~v~~~l~~~~i~~~~~ 139 (156)
+.+.+.+.+++.|.+.| ++.....+. .....+++++.+++.|+++...
T Consensus 36 ~~~~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~ 89 (316)
T 3qxb_A 36 PDRLAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTIEST 89 (316)
T ss_dssp HHHHHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCeEEEe
Confidence 34444556666777776 332222221 1113456777777778877654
No 426
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=20.75 E-value=64 Score=21.83 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHHcCc
Q psy6650 70 CLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKT 105 (156)
Q Consensus 70 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 105 (156)
+++.+.+-|.+.|++..++.-++...+.+.++..++
T Consensus 3 ~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~ 38 (152)
T 3op6_A 3 PVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHV 38 (152)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----C
T ss_pred cHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCC
Confidence 456788899999999987764444445566655443
No 427
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=20.71 E-value=1.7e+02 Score=19.37 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCC--eEEEEEcChHHHHHHHHH-HcCcCeEEEcccCC
Q psy6650 70 CLEDLDINLRKLNS--RLFVIRGQPADILPKLFK-EWKTTCLTFEEDPE 115 (156)
Q Consensus 70 sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~-~~~~~~V~~~~~~~ 115 (156)
.+...++.++..|. .+.+..|+..+.++.+.. ....+.|+++..|.
T Consensus 79 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 79 ALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred HHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 34444555555564 488889998876655432 34678888886543
No 428
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=20.67 E-value=1.8e+02 Score=20.86 Aligned_cols=30 Identities=3% Similarity=0.273 Sum_probs=22.2
Q ss_pred HHHhCCCeEEEEE---cChHHHHHHHHHHcCcC
Q psy6650 77 NLRKLNSRLFVIR---GQPADILPKLFKEWKTT 106 (156)
Q Consensus 77 ~L~~~g~~L~v~~---g~~~~~l~~l~~~~~~~ 106 (156)
.|++.|+.+.+.. |.+...+....++.++.
T Consensus 32 ~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 32 RLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp HHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred HHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 3456699999998 77777777777776664
No 429
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=20.62 E-value=1.4e+02 Score=22.02 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCh---HHHHHHHHHHcCcC
Q psy6650 69 QCLEDLDINLRKLNSRLFVIRGQP---ADILPKLFKEWKTT 106 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v~~g~~---~~~l~~l~~~~~~~ 106 (156)
.+..++=+.|++.|+.+.|..|.+ ...+....+..++.
T Consensus 104 pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~ 144 (258)
T 2i33_A 104 PGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVGAP 144 (258)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHHHHcCCC
Confidence 345566677888999999999877 44455555665655
No 430
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.59 E-value=21 Score=20.28 Aligned_cols=26 Identities=15% Similarity=0.500 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCeEEEEEcChHHHHHHHH
Q psy6650 72 EDLDINLRKLNSRLFVIRGQPADILPKLF 100 (156)
Q Consensus 72 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~ 100 (156)
.+|+..|.++|.++ .|+-++.+.+|-
T Consensus 14 ~ELQaKLaE~GAPi---~g~REElvdRLk 39 (58)
T 2do5_A 14 QELQAKLAEIGAPI---QGNREELVERLQ 39 (58)
T ss_dssp HHHHHHHHHHTCCC---CSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCcc---cccHHHHHHHHH
Confidence 57899999999885 466666555443
No 431
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=20.59 E-value=1.3e+02 Score=18.61 Aligned_cols=54 Identities=6% Similarity=-0.071 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHH-hCCceEEEe-cCCeeecCC
Q psy6650 92 PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCR-ELNIEVIAR-VSHTLYDLD 148 (156)
Q Consensus 92 ~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~-~~~i~~~~~-~~~~L~~~~ 148 (156)
......++.++.++.-...+-+-.+..++. +.+... ...++.+.+ +++.+..|.
T Consensus 16 ~C~~aK~~L~~~gi~y~~idi~~d~~~~~~---~~~~~~G~~tVP~I~i~Dg~~l~~~~ 71 (92)
T 2lqo_A 16 YCLRLKTALTANRIAYDEVDIEHNRAAAEF---VGSVNGGNRTVPTVKFADGSTLTNPS 71 (92)
T ss_dssp SHHHHHHHHHHTTCCCEEEETTTCHHHHHH---HHHHSSSSSCSCEEEETTSCEEESCC
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCHHHHHH---HHHHcCCCCEeCEEEEeCCEEEeCCC
Confidence 345677888888988777666544443332 222211 235888888 456776653
No 432
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=20.53 E-value=1.4e+02 Score=21.65 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHH
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFK 101 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~ 101 (156)
-+..|.++.++++++|+.++.+.-++.+...++++
T Consensus 48 el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~ 82 (233)
T 2v2g_A 48 ELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSE 82 (233)
T ss_dssp HHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHH
Confidence 35678889999999999999898888877777777
No 433
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=20.32 E-value=2.5e+02 Score=22.03 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhCC-CeEEEEEc
Q psy6650 70 CLEDLDINLRKLN-SRLFVIRG 90 (156)
Q Consensus 70 sL~~L~~~L~~~g-~~L~v~~g 90 (156)
++.+|.+.++++| ....|+.+
T Consensus 18 ~~~~l~~~~~~~g~~~~liVtd 39 (383)
T 3ox4_A 18 SLEKAIKDLNGSGFKNALIVSD 39 (383)
T ss_dssp HHHHHHHTTTTSCCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEC
Confidence 3445555555555 23444433
No 434
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=20.25 E-value=1.5e+02 Score=20.35 Aligned_cols=35 Identities=0% Similarity=-0.045 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcChHHHHHHHHHH
Q psy6650 68 LQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKE 102 (156)
Q Consensus 68 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 102 (156)
...|.++.+++...|+.++.+..++.+.+.+++++
T Consensus 53 ~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~ 87 (198)
T 1zof_A 53 IIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNT 87 (198)
T ss_dssp HHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHh
Confidence 46788888888888988888887777777777665
No 435
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=20.22 E-value=1.2e+02 Score=22.86 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 92 PADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 92 ~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
..+.+.++.+...++. .+-+|.+..++.+..+...|++.||.+..+.
T Consensus 158 ~~~~l~~~~~~~~~~~--~Q~~~~~~~~~~e~~l~~~~~~~gi~v~a~s 204 (312)
T 1pyf_A 158 SLEQLKEANKDGLVDV--LQGEYNLLNREAEKTFFPYTKEHNISFIPYF 204 (312)
T ss_dssp CHHHHHHHTTTSCCCE--EEEECBTTBCGGGTTHHHHHHHHTCEEEEES
T ss_pred CHHHHHHHHhhCCceE--EeccCCccccchHHHHHHHHHHcCCeEEEec
Confidence 3444555554333332 2334445444444457788888899888874
No 436
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=20.14 E-value=1.7e+02 Score=18.31 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEcC-hHHHHHHHHHHcCcC
Q psy6650 67 LLQCLEDLDINLRKLNSRLFVIRGQ-PADILPKLFKEWKTT 106 (156)
Q Consensus 67 l~~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~~ 106 (156)
....|..+.+++...|+.++.+..+ ..+.+.++++++++.
T Consensus 49 ~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~ 89 (148)
T 3hcz_A 49 ETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIG 89 (148)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCC
Confidence 3467888889998888888777644 556888888888875
No 437
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=20.10 E-value=2.8e+02 Score=20.74 Aligned_cols=71 Identities=10% Similarity=0.003 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEcC---hH---HHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEE
Q psy6650 65 RFLLQCLEDLDINLRKLNSRLFVIRGQ---PA---DILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIA 138 (156)
Q Consensus 65 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~---~~---~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~ 138 (156)
.|+.+-+..+++.+++.|..+.+...+ +. +.+..+. ..+++.|++........ .+...+...|++++.
T Consensus 74 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~-~~~vdGiIi~~~~~~~~-----~~~~~~~~~~iPvV~ 147 (349)
T 1jye_A 74 HAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLL-AQRVSGLIINYPLDDQD-----AIAVEAACTNVPALF 147 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHH-TTTCSCEEEESCCCHHH-----HHHHHHHTTTSCEEE
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHH-HCCCCEEEEecCCCChh-----HHHHHHhhCCCCEEE
Confidence 367778888899999999999887542 22 2344444 35788887753222211 122233446899988
Q ss_pred ecC
Q psy6650 139 RVS 141 (156)
Q Consensus 139 ~~~ 141 (156)
++.
T Consensus 148 i~~ 150 (349)
T 1jye_A 148 LDV 150 (349)
T ss_dssp SSS
T ss_pred Ecc
Confidence 764
No 438
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=20.01 E-value=2.6e+02 Score=21.03 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCeEEE-EEcChHHHHHHHHHHcCcC--eEEEcccCCchhHHHHHHHHHHHHhCCceEEEec
Q psy6650 69 QCLEDLDINLRKLNSRLFV-IRGQPADILPKLFKEWKTT--CLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARV 140 (156)
Q Consensus 69 ~sL~~L~~~L~~~g~~L~v-~~g~~~~~l~~l~~~~~~~--~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~ 140 (156)
+++..|. +|.+.|.--.+ +..-..+.+.++++..++. -++.+-+|.+... +..+...|++.||.+..+.
T Consensus 140 e~~~al~-~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~--~~~l~~~~~~~gi~v~a~s 211 (316)
T 3o3r_A 140 DAWEGME-ELVDQGLVKALGVSNFNHFQIERLLNKPGLKHKPVTNQVECHPYLT--QEKLIQYCHSKGIAVIAYS 211 (316)
T ss_dssp HHHHHHH-HHHHTTSEEEEEEESCCHHHHHHHHTCTTCCSCCCEEEEECBTTBC--CHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHH-HHHHcCCCcEEEEecCCHHHHHHHHHhCCCCCCceEeeccCCcccc--hHHHHHHHHHcCCEEEEec
Confidence 3443333 33445643333 3445667788888765443 2233334444432 3568899999999998874
Done!