RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6650
(156 letters)
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 184 bits (469), Expect = 1e-56
Identities = 69/161 (42%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Query: 2 SPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGC------TTFRCVFILDPWFAG 55
S +S +VHWFRKGLR+HDNP+L R +FILDP
Sbjct: 16 SLYKKAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILD 75
Query: 56 SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPE 115
VG N+WRFL Q LEDLD LRKLNSRLFV+RG+PA++ P++FK W+ LTFE D E
Sbjct: 76 WMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIE 135
Query: 116 PFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
P+ RD + L + + V SHT+Y+ + + + G
Sbjct: 136 PYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLG 176
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 181 bits (462), Expect = 1e-55
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 9/148 (6%)
Query: 12 STEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWF---------AGSSNVGIN 62
+T + WFRKGLR+HDNP+L KG VF++DP + GSS G+N
Sbjct: 2 ATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVN 61
Query: 63 KWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRD 122
+ RFLL+ L+DLD +L+KL SRL V +G+P ++L + +EWK L FE D +P+ + D
Sbjct: 62 RIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALD 121
Query: 123 QNIMTLCRELNIEVIARVSHTLYDLDQL 150
+ +EV + VSHTL++ +
Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFNPAHI 149
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 173 bits (440), Expect = 2e-52
Identities = 59/139 (42%), Positives = 81/139 (58%), Gaps = 6/139 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGC---TTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDL 74
V WFR GLR+HDNP+L L VFI D AG+ NVG N+ RFLL L+D+
Sbjct: 7 VIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDI 66
Query: 75 DINLRKLNS---RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRE 131
D L+ RL V G+PA I +L ++ + + E+D EP RD++I +LCRE
Sbjct: 67 DDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRE 126
Query: 132 LNIEVIARVSHTLYDLDQL 150
LNI+ + +VSHTL+D +
Sbjct: 127 LNIDFVEKVSHTLWDPQLV 145
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 161 bits (409), Expect = 4e-48
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 5 STPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP------WFAGSSN 58
S+ + + + WFR LR+ DN +L + T V+ LDP F
Sbjct: 30 SSSSVKRKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPK 89
Query: 59 VGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFG 118
G + FL++CL DL NL K L + G+P +ILP L K++ + ++
Sbjct: 90 TGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEE 149
Query: 119 KVRDQNIMTLCREL--NIEVIARVSHTLYDLDQLKPDS 154
++ + + + + ++ T+Y D L D
Sbjct: 150 VDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDV 187
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 144 bits (366), Expect = 4e-42
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP-----WFAGSSNVGINKWRFLLQCLE 72
+ WFR LR+HD+ L LK V+ DP G + G + FL Q ++
Sbjct: 9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQ 68
Query: 73 DLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
+L +L+K+ ++L V G P ++P++ K+ + + + ++N++ L
Sbjct: 69 NLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTIL 128
Query: 133 NIEVIARVSHTLYDLDQLKPDS 154
IE TL + L
Sbjct: 129 GIEAKGYWGSTLCHPEDLPFSI 150
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 111 bits (279), Expect = 1e-29
Identities = 34/137 (24%), Positives = 66/137 (48%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ W R+ LR+ DN L +F LDP S+++ + +L CL++L
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
++ SRL +++G P ++P+L ++ + + + +D EP+G+ RD + + I +
Sbjct: 66 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAV 125
Query: 138 ARVSHTLYDLDQLKPDS 154
L+ DQ+ S
Sbjct: 126 QLWDQLLHSPDQILSGS 142
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 101 bits (255), Expect = 3e-26
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP--WFAGSSNVGINKWRFLLQCLEDLD 75
+ FR+ LR+ DN L L C VFI DP F++ L +LD
Sbjct: 4 IFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVS-FMINSLLELD 62
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
LRK SRL V G+ ++ + F + + ED PF RD+ I +C E IE
Sbjct: 63 DELRKKGSRLNVFFGEAEKVVSRFFNKVD--AIYVNEDYTPFSISRDEKIRKVCEENGIE 120
Query: 136 V 136
Sbjct: 121 F 121
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 102 bits (256), Expect = 3e-26
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 5/155 (3%)
Query: 1 MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVG 60
MS + + WFR+ LR+ DNP+L ++ +F+ P G + G
Sbjct: 1 MSGSVSGCGSGGC---SIVWFRRDLRVEDNPALAAAVRAGPVI-ALFVWAPEEEGHYHPG 56
Query: 61 INKWRFLLQCLEDLDINLRKLNSRLFVIRG-QPADILPKLFKEWKTTCLTFEEDPEPFGK 119
+L L LD +LR L + L R L + K + + F +P
Sbjct: 57 RVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSL 116
Query: 120 VRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDS 154
VRD + I V + + LY+ ++ +
Sbjct: 117 VRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDEL 151
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 95.6 bits (239), Expect = 4e-24
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDP--WFAGSSNVGINKWRFLLQCLEDLD 75
+ W R LR+HD+P+L E L + +LDP + + L+ + L
Sbjct: 5 LVWHRGDLRLHDHPALLEALARGPVV-GLVVLDPNNLKTT----PRRRA-WFLENVRALR 58
Query: 76 INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
R L+V+ G P + +P+ + K + P+G+ RD +
Sbjct: 59 EAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRV 108
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 93.4 bits (233), Expect = 3e-23
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 5/123 (4%)
Query: 18 VHWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
+ WFR+ LR+HDN +L + ++I P + N+ + + L L I
Sbjct: 4 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 63
Query: 77 NLRKLNSRLFVIRG----QPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCREL 132
L + L +I+ ++ E T L + E + RD + R +
Sbjct: 64 ALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRNV 123
Query: 133 NIE 135
E
Sbjct: 124 VCE 126
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD;
1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Length = 482
Score = 92.0 bits (229), Expect = 1e-22
Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 10/141 (7%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFR----CVFILDPWFAGSSNVGINKWRFLLQCLED 73
V+W + R DN +L VF L F + F+L+ L++
Sbjct: 40 VYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAG--IRQYE-FMLKGLQE 96
Query: 74 LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
L+++L + F +RG P + + + K++ L + P ++Q I + ++
Sbjct: 97 LEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRI---KNQWIEKVISGIS 153
Query: 134 IEVIARVSHTLYDLDQLKPDS 154
I +H + +
Sbjct: 154 IPFFEVDAHNVVPCWEASQKH 174
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine
dimers, UV damaged DNA, DNA repai flavoprotein; HET:
FAD; 1.71A {Oryza sativa japonica group}
Length = 506
Score = 79.8 bits (197), Expect = 2e-18
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 12/135 (8%)
Query: 18 VHWFRKGLRMHDNPSL----REGLKGCTTFRCVFILDP--WFAGSSNVGINKWRFLLQCL 71
V+W + R+ DN +L + F L P + + + FLL+ L
Sbjct: 41 VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSAR---RRQLGFLLRGL 97
Query: 72 EDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI--MTLC 129
L + + F+ G PA+I P L + + L + P + +
Sbjct: 98 RRLAADAAARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRR 156
Query: 130 RELNIEVIARVSHTL 144
+ V +H +
Sbjct: 157 EAPGVAVHQVDAHNV 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.44
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 26/100 (26%)
Query: 61 INKWRFLLQCLEDLDINLRKLNS-RLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGK 119
+NK L + ++I+L N + V+ G P L L LT + P G
Sbjct: 353 VNKTNSHLPAGKQVEISLV--NGAKNLVVSGPPQS-LYGL-------NLTLRKAKAPSGL 402
Query: 120 VRDQNIMTLC-RELNIEVIAR---VS---HTLYDLDQLKP 152
DQ+ + R+L R V+ H+ L P
Sbjct: 403 --DQSRIPFSERKLKFSN--RFLPVASPFHSHL----LVP 434
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05
2, protein structure initiative, midwest center for
structu genomics; 2.15A {Enterococcus faecalis}
Length = 372
Score = 27.8 bits (62), Expect = 1.4
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 106 TCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPD 153
T L ED + R ++ + + ++++ +S D
Sbjct: 36 TSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFD 83
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG,
PSI, midwest center for struct genomics; 2.30A {Bacillus
cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Length = 385
Score = 27.9 bits (62), Expect = 1.5
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 106 TCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141
TCL P+ + I+ ++ N+EVI V+
Sbjct: 60 TCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVA 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.5
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 7/25 (28%)
Query: 77 NLRKLNSRL--FVIRGQPADILPKL 99
L+KL + L + D P L
Sbjct: 21 ALKKLQASLKLY----AD-DSAPAL 40
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain,
hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella
pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A*
2kb2_A*
Length = 413
Score = 27.7 bits (62), Expect = 1.8
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 123 QNIMTLCRELNIEVIA 138
+++ C +L I V+A
Sbjct: 351 ASVVRCCEDLGITVVA 366
>2gvk_A Heme peroxidase; PC04261D, structural genomics, joint center for
structural G JCSG, protein structure initiative, PSI;
HET: MSE; 1.60A {Bacteroides thetaiotaomicron} SCOP:
d.58.4.14
Length = 317
Score = 27.2 bits (60), Expect = 2.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 50 DPWFAGSSNVGINKWRFLLQCLEDLDIN 77
D FAG S V + K+ + L +
Sbjct: 179 DADFAGGSYVFVQKYIHDMVAWNALPVE 206
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national
project on protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Length = 200
Score = 26.9 bits (59), Expect = 2.4
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 97 PKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
+ F+ K L E G+V D++I+ L +++N
Sbjct: 8 TENFERAKKEALMSLEIALRKGEV-DEDIIPLLKKIN 43
>2iiz_A Melanin biosynthesis protein TYRA, putative; NP_716371.1, putative
melanin biosynthesis protein TYRA, STR genomics, PSI-2;
HET: MSE HEM; 2.30A {Shewanella oneidensis} SCOP:
d.58.4.14 PDB: 2hag_A*
Length = 312
Score = 27.2 bits (60), Expect = 2.7
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 18 VHWFRKGLRMHDNPSL---REGL---KGCTTFRCVFIL--DPWFAGSSNVGINKWRFLLQ 69
+ +G R D+ L +G KG + DP F G S + + K+ L
Sbjct: 132 LVEEERGFRFMDSRDLTGFVDGTENPKGRHRQEVALVGSEDPEFKGGSYIHVQKYAHNLS 191
Query: 70 CLEDLDIN 77
L +
Sbjct: 192 KWHRLPLK 199
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 26.8 bits (60), Expect = 3.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 123 QNIMTLCRELNIEVIAR 139
+N++ L + L I V R
Sbjct: 206 ENVIKLAKSLEIPVEER 222
>3qns_A DYP peroxidase; lignan, heme, enzyme, oxidoreductase; HET: HEM SO4;
1.40A {Rhodococcus jostii RHA1} PDB: 3qnr_A* 3ved_A*
3vec_A* 3vef_A* 3vee_A* 3veg_A*
Length = 353
Score = 26.9 bits (59), Expect = 3.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 50 DPWFAGSSNVGINKWRFLLQCLEDLDI 76
DP F G S V + K+ + L
Sbjct: 176 DPDFRGGSYVIVQKYLHDMSAWNTLST 202
>3rlf_F Maltose transport system permease protein MALF; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F*
3pv0_F* 3puw_F* 3fh6_F
Length = 514
Score = 26.0 bits (57), Expect = 5.8
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 34 REGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQ 69
E L+G +R + IL P+ A S + I ++ L
Sbjct: 308 WEALRGKAVYRVLLIL-PY-AVPSFISILIFKGLFN 341
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 25.6 bits (57), Expect = 6.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 123 QNIMTLCRELNIEVIAR 139
I+ L +EL IEV +
Sbjct: 224 DAIIKLAKELGIEVREQ 240
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 25.9 bits (58), Expect = 6.9
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 123 QNIMTLCRELNIEVIAR 139
++ E+N+ V
Sbjct: 207 DVVIACANEINMPVKEI 223
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 25.7 bits (57), Expect = 7.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 123 QNIMTLCRELNIEVIAR 139
++TL +E IEVI +
Sbjct: 245 DTVITLAKEAGIEVIEK 261
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 25.6 bits (57), Expect = 7.1
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 123 QNIMTLCRELNIEVIAR 139
+++ + ++L EV
Sbjct: 222 DSVIRIAKDLGYEVQVV 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.451
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,493,853
Number of extensions: 137621
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 38
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)