RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6650
(156 letters)
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus
[TaxId: 32046]}
Length = 202
Score = 70.1 bits (170), Expect = 3e-16
Identities = 34/137 (24%), Positives = 66/137 (48%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ W R+ LR+ DN L +F LDP S+++ + +L CL++L
Sbjct: 4 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 63
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
++ SRL +++G P ++P+L ++ + + + +D EP+G+ RD + + I +
Sbjct: 64 YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAV 123
Query: 138 ARVSHTLYDLDQLKPDS 154
L+ DQ+ S
Sbjct: 124 QLWDQLLHSPDQILSGS 140
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 70.0 bits (170), Expect = 4e-16
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 15 KHM----VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSN-----VGINKWR 65
KH+ + WFR LR+HD+ L LK V+ DP ++ G +
Sbjct: 2 KHVPPTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSN 61
Query: 66 FLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNI 125
FL Q +++L +L+K+ ++L V G P ++P++ K+ + + + ++N+
Sbjct: 62 FLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNL 121
Query: 126 MTLCRELNIEVIARVSHTLYDLDQLKPDS 154
+ L IE TL + L
Sbjct: 122 VKQLTILGIEAKGYWGSTLCHPEDLPFSI 150
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 185
Score = 62.7 bits (151), Expect = 2e-13
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ WFR+ LR+ DNP+L ++ +F+ P G + G +L L LD +
Sbjct: 3 IVWFRRDLRVEDNPALAAAVRAGPVI-ALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 61
Query: 78 LRKLNSRLFVIRG-QPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
LR L + L R L + K + + F +P VRD + I V
Sbjct: 62 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 121
Query: 137 IARVSHTLYDLDQLKPDS 154
+ + LY+ ++ +
Sbjct: 122 RSFNADLLYEPWEVTDEL 139
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 53.4 bits (127), Expect = 3e-10
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
Query: 18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
+ W R LR+HD+P+L E L + +LDP + + L+ + L
Sbjct: 4 LVWHRGDLRLHDHPALLEALARGPVV-GLVVLDPNN---LKTTPRRRAWFLENVRALREA 59
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
R L+V+ G P + +P+ + K + P+G+ RD +
Sbjct: 60 YRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALP------- 112
Query: 138 ARVSHTLYDLDQLKPDS 154
H L L PD
Sbjct: 113 -VPLHLLPAPHLLPPDL 128
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId:
562]}
Length = 200
Score = 51.5 bits (122), Expect = 3e-09
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 19 HWFRKGLRMHDNPSLREGLK-GCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
WFR+ LR+HDN +L + ++I P + N+ + + L L I
Sbjct: 5 VWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIA 64
Query: 78 LRKLNSRLFVIRGQPADILPKLFKEWK 104
L + L ++ K+
Sbjct: 65 LAEKGIPLLFREVDDFVASVEIVKQVC 91
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain
{Bacillus cereus [TaxId: 1396]}
Length = 244
Score = 29.7 bits (67), Expect = 0.10
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 106 TCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVS 141
TCL P+ + I+ ++ N+EVI V+
Sbjct: 36 TCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVA 71
>d2iiza1 d.58.4.14 (A:5-310) Melanin biosynthesis protein TyrA
{Shewanella oneidensis [TaxId: 70863]}
Length = 306
Score = 27.1 bits (60), Expect = 0.78
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 18 VHWFRKGLRMHDNPSL------REGLKGCTTFRCVFIL--DPWFAGSSNVGINKWRFLLQ 69
+ +G R D+ L E KG + DP F G S + + K+ L
Sbjct: 127 LVEEERGFRFMDSRDLTGFVDGTENPKGRHRQEVALVGSEDPEFKGGSYIHVQKYAHNLS 186
Query: 70 CLEDLDINLR 79
L + +
Sbjct: 187 KWHRLPLKKQ 196
>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 309
Score = 26.8 bits (59), Expect = 1.3
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 18 VHWFRKGLRMHDNPSL---REGLKGCTT------FRCVFILDPWFAGSSNVGINKWRFLL 68
G R D ++ +G + F + D FAG S V + K+ +
Sbjct: 130 SVDETHGFRYMDGKAIIGFVDGTENPAVDENPYHFAVIGEEDADFAGGSYVFVQKYIHDM 189
Query: 69 QCLEDLDINLR 79
L + +
Sbjct: 190 VAWNALPVEQQ 200
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 25.6 bits (56), Expect = 3.3
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 127 TLCRELNIEVIARVSHTL 144
+L + + ++IAR H +
Sbjct: 769 SLDKSIQNDIIARTEHVM 786
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
domain {Staphylococcus aureus [TaxId: 1280]}
Length = 80
Score = 23.9 bits (52), Expect = 5.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 67 LLQCLEDLDINLRKLNSR 84
+L +INL + SR
Sbjct: 19 VLNTFALFNINLSWIESR 36
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 24.7 bits (53), Expect = 6.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 115 EPFGKVRDQNIMTLCRELNI 134
P G +RD+ ++ REL I
Sbjct: 264 APLGSIRDEEVIEKARELGI 283
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 146
Score = 24.3 bits (52), Expect = 6.3
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 49 LDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCL 108
L+ ++G + F Q +D D L +L + R EW+ +
Sbjct: 80 LENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVV 139
Query: 109 T 109
Sbjct: 140 D 140
>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
candidum [TaxId: 27317]}
Length = 439
Score = 24.3 bits (52), Expect = 7.5
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 50 DPWFAGSSNVGINKWRFLLQCLEDLDI-NLRKLNSRLFVIRGQPADILP-KLFKEWKT-- 105
W S + ++ + + N NS + + + A+ L ++F WK+
Sbjct: 206 PSWALDGSFMAFRHFQQKVPEFNAYTLANAIPANSAGNLTQQEGAEFLGARMFGRWKSGA 265
Query: 106 -TCLTFEEDPEPFGK--VRDQNIMTLCRELNIEVIARVSHT 143
L D G R+ N + +H
Sbjct: 266 PIDLAPTADDPALGADPQRNNNFDYSDTLTDETRCPFGAHV 306
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.451
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 635,296
Number of extensions: 29155
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 16
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.8 bits)