Query psy666
Match_columns 102
No_of_seqs 43 out of 45
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 23:51:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lje_A Zebrafish rnase5; angio 37.7 9.5 0.00033 26.5 0.7 20 6-25 2-21 (130)
2 2vq8_A RNAse ZF-1A; evolution, 29.0 20 0.00068 25.5 1.2 21 7-28 12-32 (139)
3 3kf8_B Protein TEN1; OB fold; 28.7 22 0.00075 25.4 1.4 26 26-51 16-43 (123)
4 2lv9_A Histone-lysine N-methyl 23.2 16 0.00055 23.8 -0.1 38 22-59 15-52 (98)
5 2vq9_A RNAse 1, RNAse ZF-3E; n 16.2 51 0.0017 23.6 1.2 24 4-28 19-42 (148)
6 1dy5_A Ribonuclease A; hydrola 9.3 88 0.003 21.2 0.6 16 12-28 2-17 (124)
7 2b5b_A Defensin; antibiotic; N 9.2 75 0.0026 18.3 0.2 18 26-43 15-32 (36)
8 1xrd_A LH-1, light-harvesting 9.2 36 0.0012 21.1 -1.3 8 85-92 5-12 (52)
9 1rra_A RNAse A, protein (ribon 9.0 89 0.003 21.2 0.5 16 12-28 2-17 (124)
10 4hi7_A GI20122; GST, glutathio 9.0 57 0.002 21.9 -0.5 33 34-66 70-102 (228)
No 1
>3lje_A Zebrafish rnase5; angiogenins, FISH rnases, hydrolase; 1.80A {Danio rerio} SCOP: d.5.1.0
Probab=37.67 E-value=9.5 Score=26.46 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=17.6
Q ss_pred CCchhhhhhhchhhhhhccC
Q psy666 6 THPASVLQELQVLPVWYLST 25 (102)
Q Consensus 6 ~~~~~~~~~~~Wf~~kyL~t 25 (102)
+-|+.+++.++||.+|+...
T Consensus 2 ~~~~~~~~~~~~F~~qHvd~ 21 (130)
T 3lje_A 2 KVPPDVDPRYQKFLRQHVDA 21 (130)
T ss_dssp CCCTTTHHHHHHHHHHHBCT
T ss_pred CCchhhhhHHHHHHHheECC
Confidence 34899999999999999984
No 2
>2vq8_A RNAse ZF-1A; evolution, zebrafish, polymorphism, ribonucleases, hydrolase; 1.35A {Danio rerio} PDB: 3ljd_A 3ln8_A
Probab=29.01 E-value=20 Score=25.51 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=18.4
Q ss_pred CchhhhhhhchhhhhhccCCCC
Q psy666 7 HPASVLQELQVLPVWYLSTTES 28 (102)
Q Consensus 7 ~~~~~~~~~~Wf~~kyL~tpes 28 (102)
.|.+.++..+||++|.+ .|++
T Consensus 12 ~~~~~~~~~~~F~~qHv-dp~~ 32 (139)
T 2vq8_A 12 QPEHVKERYKNFLNQHV-GPDM 32 (139)
T ss_dssp CCTTTHHHHHHHHHHHB-CTTC
T ss_pred CCCccCcHHHHHHHhhc-CCCC
Confidence 48899999999999999 4766
No 3
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=28.71 E-value=22 Score=25.40 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=18.4
Q ss_pred CCCcchhhheeeeeecc--ccCCCcccc
Q psy666 26 TESQALRYDVIRFIVGV--IHPTNELLC 51 (102)
Q Consensus 26 pesesL~~DlIRfIcc~--~hPtNevl~ 51 (102)
|++-.=.+|=|||+||+ |.|...+|.
T Consensus 16 P~aS~s~p~kVR~L~QVisYd~~sa~L~ 43 (123)
T 3kf8_B 16 PEASISNPERLRILAQVKDFIPHESTIV 43 (123)
T ss_dssp TTCBTTBCEEEEEEEEEEEEEGGGTEEE
T ss_pred ccccccCCceEEEEEEEEEEcCCCcEEE
Confidence 55666678899999996 456555554
No 4
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=23.22 E-value=16 Score=23.76 Aligned_cols=38 Identities=29% Similarity=0.591 Sum_probs=26.9
Q ss_pred hccCCCCcchhhheeeeeeccccCCCcccccCCchHHH
Q psy666 22 YLSTTESQALRYDVIRFIVGVIHPTNELLCSDIIPRWA 59 (102)
Q Consensus 22 yL~tpesesL~~DlIRfIcc~~hPtNevl~SdIipRWa 59 (102)
|+.+-|..+--.|+||=||..-.-...||+=|.-++|.
T Consensus 15 ~~~~~edg~~~~d~vrCiC~~~~~~~~mi~Cd~C~~w~ 52 (98)
T 2lv9_A 15 YFQGSEDGSYGTDVTRCICGFTHDDGYMICCDKCSVWQ 52 (98)
T ss_dssp ----CTTCCCCCCBCCCTTSCCSCSSCEEEBTTTCBEE
T ss_pred cccCCccCCCCCCCEEeECCCccCCCcEEEcCCCCCcC
Confidence 55666777777899999988777677788878777774
No 5
>2vq9_A RNAse 1, RNAse ZF-3E; nuclease, evolution, hydrolase, zebrafish, polymorphism, endonuclease, ribonucleases; 1.85A {Danio rerio}
Probab=16.21 E-value=51 Score=23.59 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=13.1
Q ss_pred cCCCchhhhhhhchhhhhhccCCCC
Q psy666 4 PCTHPASVLQELQVLPVWYLSTTES 28 (102)
Q Consensus 4 ~~~~~~~~~~~~~Wf~~kyL~tpes 28 (102)
-++||..-.+..+||++|.. +|.+
T Consensus 19 ~~~~~sl~~~~~~~F~~qHv-~~~~ 42 (148)
T 2vq9_A 19 SHMQPAEIRRRYEHFLTQHV-YGGI 42 (148)
T ss_dssp -------CHHHHHHHHHHHB-CTTC
T ss_pred eeecCCcchhHHHHHhhhhc-CCCC
Confidence 35778776458999999999 3444
No 6
>1dy5_A Ribonuclease A; hydrolase, deamidation; HET: IAS; 0.87A {Bos taurus} SCOP: d.5.1.1 PDB: 1lsq_A 3mzq_A 1c0c_A 1c0b_A 3mzr_A 1kf3_A 1a2w_A* 1afl_A* 1afu_A 1aqp_A 1afk_A 1bzq_A 1dfj_E 1eos_A* 1eow_A* 1f0v_A 1bel_A 1jn4_A* 1js0_A 1jvt_A ...
Probab=9.30 E-value=88 Score=21.21 Aligned_cols=16 Identities=0% Similarity=-0.108 Sum_probs=12.3
Q ss_pred hhhhchhhhhhccCCCC
Q psy666 12 LQELQVLPVWYLSTTES 28 (102)
Q Consensus 12 ~~~~~Wf~~kyL~tpes 28 (102)
|..++||.+|+. .|++
T Consensus 2 ~~~~~~F~~qHv-dp~~ 17 (124)
T 1dy5_A 2 ETAAAKFERQHM-DSST 17 (124)
T ss_dssp CCHHHHHHHHHB-CTTS
T ss_pred cchhhhHHheeE-CCCC
Confidence 346799999998 4765
No 7
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=9.24 E-value=75 Score=18.32 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=12.8
Q ss_pred CCCcchhhheeeeeeccc
Q psy666 26 TESQALRYDVIRFIVGVI 43 (102)
Q Consensus 26 pesesL~~DlIRfIcc~~ 43 (102)
-|..+|--..=.||||+-
T Consensus 15 herptlpyncgkyiccvp 32 (36)
T 2b5b_A 15 HERPTLPYNCGKYICCVP 32 (36)
T ss_dssp SCCSSCSSSBCCSSCSSS
T ss_pred cCCCCcCccCCceEEeEE
Confidence 355666677778999963
No 8
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=9.18 E-value=36 Score=21.13 Aligned_cols=8 Identities=38% Similarity=1.265 Sum_probs=6.3
Q ss_pred hhhccCCC
Q psy666 85 WLCYDPEK 92 (102)
Q Consensus 85 WLffd~~~ 92 (102)
||.|||++
T Consensus 5 Wl~fDPrr 12 (52)
T 1xrd_A 5 WQLFDPRQ 12 (52)
T ss_dssp GGTSSHHH
T ss_pred EEEEchhH
Confidence 88898863
No 9
>1rra_A RNAse A, protein (ribonuclease); hydrolase(phosphoric diester); 2.50A {Rattus norvegicus} SCOP: d.5.1.1
Probab=9.01 E-value=89 Score=21.18 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=12.3
Q ss_pred hhhhchhhhhhccCCCC
Q psy666 12 LQELQVLPVWYLSTTES 28 (102)
Q Consensus 12 ~~~~~Wf~~kyL~tpes 28 (102)
|..++||.+|+. .|++
T Consensus 2 ~~~~~~F~~qHv-dp~~ 17 (124)
T 1rra_A 2 ESSADKFKRQHM-DTEG 17 (124)
T ss_dssp CCTTHHHHHHHB-CTTS
T ss_pred cchhhhHHheEE-CCCC
Confidence 346799999998 4765
No 10
>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}
Probab=9.01 E-value=57 Score=21.92 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=26.4
Q ss_pred heeeeeeccccCCCcccccCCchHHHHHHHHHh
Q psy666 34 DVIRFIVGVIHPTNELLCSDIIPRWAVIGWLLT 66 (102)
Q Consensus 34 DlIRfIcc~~hPtNevl~SdIipRWavIgWLL~ 66 (102)
.|+||+.-.+.|...++-+|...|..+..|+..
T Consensus 70 aI~~YL~~~~~~~~~L~p~d~~~~~~~~~~~~~ 102 (228)
T 4hi7_A 70 AIMAYLVSKYGKDDSLYPKDLVKRALVDNRMYF 102 (228)
T ss_dssp HHHHHHHHHHCSSSTTSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCchhHHHHHHhhchhhh
Confidence 477888888877777888888888888888754
Done!