Query psy666
Match_columns 102
No_of_seqs 43 out of 45
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 23:51:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy666.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/666hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1whna_ d.50.1.1 (A:) tRNA-dih 21.9 18 0.0013 23.2 1.6 64 6-82 26-90 (128)
2 d2qiya1 d.17.4.2 (A:3-141) UBP 20.3 7.6 0.00055 23.9 -0.6 22 18-39 114-139 (139)
3 d1jata_ d.20.1.1 (A:) Ubiquiti 17.5 19 0.0014 23.0 0.9 57 34-101 67-126 (152)
4 d1nbja_ g.3.3.2 (A:) Cycloviol 16.7 19 0.0014 18.9 0.6 8 2-9 7-14 (30)
5 d1rnfa_ d.5.1.1 (A:) Ribonucle 15.5 29 0.0021 22.1 1.5 17 12-28 3-19 (120)
6 d1paqa_ a.118.1.14 (A:) Transl 14.8 37 0.0027 21.7 1.8 35 47-87 122-158 (161)
7 d1fzya_ d.20.1.1 (A:) Ubiquiti 12.5 44 0.0032 20.8 1.6 58 32-100 64-125 (149)
8 d1hcca_ g.18.1.1 (A:) Factor H 11.3 49 0.0036 17.6 1.4 32 3-41 3-34 (59)
9 d2pvaa_ d.153.1.3 (A:) Penicil 11.2 34 0.0025 24.7 0.8 46 55-101 110-169 (342)
10 d2glia5 g.37.1.1 (A:229-257) F 11.2 39 0.0028 17.5 0.8 11 6-16 15-25 (29)
No 1
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.88 E-value=18 Score=23.19 Aligned_cols=64 Identities=13% Similarity=-0.031 Sum_probs=41.1
Q ss_pred CCchhhhhhhchhhhhhccCCCCcchhhh-eeeeeeccccCCCcccccCCchHHHHHHHHHhhcCchHHHHhhHHHhh
Q psy666 6 THPASVLQELQVLPVWYLSTTESQALRYD-VIRFIVGVIHPTNELLCSDIIPRWAVIGWLLTSCTSPVVLANCKLALF 82 (102)
Q Consensus 6 ~~~~~~~~~~~Wf~~kyL~tpesesL~~D-lIRfIcc~~hPtNevl~SdIipRWavIgWLL~~c~~~~~~anaKLALF 82 (102)
..|-+.||| |.+++++..|.-+..-.+ ==||+|.|..... ...+..- ...+..+.++-|+.||-
T Consensus 26 ~~pKs~LqE--~~Qk~~~~~P~Y~~~~~~~~~~F~~~V~v~g~-~~~s~~g----------~~SKK~AEq~AA~~AL~ 90 (128)
T d1whna_ 26 ITPKMCLLE--WCRREKLPQPVYETVQRTIDRMFCSVVTVAEQ-KYQSTLW----------DKSKKLAEQTAAIVCLR 90 (128)
T ss_dssp CCHHHHHHH--HHHHTTCCCCCCCEEECSSSCCEEEEEEETTE-EEEESSC----------BSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH--HHHhcCCCCCeEEEeecccCCCCEEEEEECCe-EeeccCC----------cccHHHHHHHHHHHHHH
Confidence 457788886 679999999988765432 1359998877543 3332210 02335777888888873
No 2
>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.29 E-value=7.6 Score=23.86 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=15.1
Q ss_pred hhhhhccCCCCcc----hhhheeeee
Q psy666 18 LPVWYLSTTESQA----LRYDVIRFI 39 (102)
Q Consensus 18 f~~kyL~tpeses----L~~DlIRfI 39 (102)
|.+-|+-.|+... ...|+.|||
T Consensus 114 F~qtFvL~p~~~~~~~~I~nDifR~v 139 (139)
T d2qiya1 114 FCQTFILLPSSNGSTFDITNDIIRFI 139 (139)
T ss_dssp EEEEEEEEECC---CEEEEEEEEEEE
T ss_pred eEEEEEEEecCCCCEEEEEeeEEEeC
Confidence 6777777776543 678888886
No 3
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=17.47 E-value=19 Score=23.04 Aligned_cols=57 Identities=19% Similarity=0.419 Sum_probs=34.7
Q ss_pred heeeeeeccccCC---CcccccCCchHHHHHHHHHhhcCchHHHHhhHHHhhhhhhhccCCCCCeeeecCC
Q psy666 34 DVIRFIVGVIHPT---NELLCSDIIPRWAVIGWLLTSCTSPVVLANCKLALFYDWLCYDPEKDNIMNIDQI 101 (102)
Q Consensus 34 DlIRfIcc~~hPt---Nevl~SdIipRWavIgWLL~~c~~~~~~anaKLALFyDWLffd~~~dnIMnIEPa 101 (102)
=-|||..-.+||. +--+|-+++..+ | +. .... .++-+...-|+.+|+.++-.|.|.|
T Consensus 67 P~v~F~t~i~HPnI~~~G~icl~~~~~~----W--~p---~~~i--~~il~~i~~ll~~P~~~~p~n~eaa 126 (152)
T d1jata_ 67 PKVRFLTKIYHPNIDRLGRICLDVLKTN----W--SP---ALQI--RTVLLSIQALLASPNPNDPLANDVA 126 (152)
T ss_dssp CEEEECSCCCBTTBCTTCCBCCGGGTTT----C--CT---TCCH--HHHHHHHHHHHHSCCTTSTTCCTTH
T ss_pred cEEEecCCCCCCcCCCCCCeeecccccc----C--Cc---hhHH--HHHHHHHHHHHcCCCCCCcccHHHH
Confidence 3589999999997 444555665543 3 11 1111 2234445667788888877776654
No 4
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=16.74 E-value=19 Score=18.89 Aligned_cols=8 Identities=50% Similarity=1.219 Sum_probs=5.9
Q ss_pred CccCCCch
Q psy666 2 WVPCTHPA 9 (102)
Q Consensus 2 ~~~~~~~~ 9 (102)
|+|||--|
T Consensus 7 ~ipctvta 14 (30)
T d1nbja_ 7 YIPCTVTA 14 (30)
T ss_dssp SSCCSHHH
T ss_pred EEeeeeee
Confidence 88888654
No 5
>d1rnfa_ d.5.1.1 (A:) Ribonuclease 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.52 E-value=29 Score=22.15 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=13.4
Q ss_pred hhhhchhhhhhccCCCC
Q psy666 12 LQELQVLPVWYLSTTES 28 (102)
Q Consensus 12 ~~~~~Wf~~kyL~tpes 28 (102)
.+.++||.+|+...+.+
T Consensus 3 ~~~y~~F~~qHvd~~~~ 19 (120)
T d1rnfa_ 3 DGMYQRFLRQHVHPEET 19 (120)
T ss_dssp HHHHHHHHHHHBCSSCC
T ss_pred cHHHHHHHHhccCCCCC
Confidence 46799999999976544
No 6
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.77 E-value=37 Score=21.67 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=20.4
Q ss_pred CcccccCCchHHHHHHHHHhhcCc--hHHHHhhHHHhhhhhhh
Q psy666 47 NELLCSDIIPRWAVIGWLLTSCTS--PVVLANCKLALFYDWLC 87 (102)
Q Consensus 47 Nevl~SdIipRWavIgWLL~~c~~--~~~~anaKLALFyDWLf 87 (102)
++|+.-|.|.+|+ ...++ .......++.=|.|||-
T Consensus 122 ~dii~Ed~i~~W~------~~~~~~~~~~~~~~~~~~fv~WL~ 158 (161)
T d1paqa_ 122 NDIIEEDVIYKWW------DNVSTDPRYDEVKKLTVKWVEWLQ 158 (161)
T ss_dssp TTSSCHHHHHHHH------HTCCCCGGGHHHHHHHHHHHHHHH
T ss_pred hchhcHHHHHHHH------HcCCCchHHHHHHHHHHHHHHHHH
Confidence 4556666666665 33332 23334567778999983
No 7
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Probab=12.46 E-value=44 Score=20.83 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=33.7
Q ss_pred hhheeeeeeccccCC----CcccccCCchHHHHHHHHHhhcCchHHHHhhHHHhhhhhhhccCCCCCeeeecC
Q psy666 32 RYDVIRFIVGVIHPT----NELLCSDIIPRWAVIGWLLTSCTSPVVLANCKLALFYDWLCYDPEKDNIMNIDQ 100 (102)
Q Consensus 32 ~~DlIRfIcc~~hPt----Nevl~SdIipRWavIgWLL~~c~~~~~~anaKLALFyDWLffd~~~dnIMnIEP 100 (102)
.|=.|+|+.-.+||. +.+++.++.+.| |- .+... ...=++ .-=|+.+|+.|+-.|.|-
T Consensus 64 ~pP~v~f~t~i~HpnI~~~~~~~~~~~~~~~----W~---p~~ti--~~il~~--i~~ll~~p~~~~p~n~ea 125 (149)
T d1fzya_ 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNA----WS---PVITL--KSALIS--LQALLQSPEPNDPQDAEV 125 (149)
T ss_dssp SCCEEEESSCCCBTTBCTTTCCBCCGGGTTT----CC---TTCCH--HHHHHH--HHHHHHSCCTTSCSSHHH
T ss_pred CCcEEEecCCCcCCcccCCcceeechhhccc----CC---CcCCH--HHHHHH--HHHHHhCCCCCChhHHHH
Confidence 455689999999997 446777777764 21 11111 111122 223456787787777653
No 8
>d1hcca_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.34 E-value=49 Score=17.59 Aligned_cols=32 Identities=9% Similarity=0.252 Sum_probs=20.3
Q ss_pred ccCCCchhhhhhhchhhhhhccCCCCcchhhheeeeeec
Q psy666 3 VPCTHPASVLQELQVLPVWYLSTTESQALRYDVIRFIVG 41 (102)
Q Consensus 3 ~~~~~~~~~~~~~~Wf~~kyL~tpesesL~~DlIRfIcc 41 (102)
|+|.+|..++.- +.......-..-|.|+|-|-
T Consensus 3 i~C~~pp~~~nG-------~~~~~~~~y~~g~~v~y~C~ 34 (59)
T d1hcca_ 3 LPCKSPPEISHG-------VVAHMSDSYQYGEEVTYKCF 34 (59)
T ss_dssp CCCCSCCCBTTE-------EESCCCSCCCSSCEECEEEC
T ss_pred CCCcCCCCCCCE-------EEeCCCCcccCCCEEEEECC
Confidence 688888776543 23333333355689999986
No 9
>d2pvaa_ d.153.1.3 (A:) Penicillin V acylase {Bacillus sphaericus [TaxId: 1421]}
Probab=11.24 E-value=34 Score=24.67 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhhcCchHH--HHhhHHHhh------------hhhhhccCCCCCeeeecCC
Q psy666 55 IPRWAVIGWLLTSCTSPVV--LANCKLALF------------YDWLCYDPEKDNIMNIDQI 101 (102)
Q Consensus 55 ipRWavIgWLL~~c~~~~~--~anaKLALF------------yDWLffd~~~dnIMnIEPa 101 (102)
+.-..++.|+|..|++-.+ ++-.|+-+. +-|++.|. +|+..=|||-
T Consensus 110 l~~~~~~~~iL~n~~TV~Ev~~~l~~~~i~~~~~~~~~~~~~lH~~i~D~-sG~s~ViE~~ 169 (342)
T d2pvaa_ 110 INPVYVISQVLGNCVTVDDVIEKLTSYTLLNEANIILGFAPPLHYTFTDA-SGESIVIEPD 169 (342)
T ss_dssp ECGGGHHHHHHHHCCSHHHHHHHHTTEEEBCCCCTTTSSCCCEEEEEECT-TCCEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCHHHHHHHhccCcEEeccccccCCCCceEEEEECC-CCCEEEEEEc
Confidence 5667899999999996332 222232221 56888895 6888889974
No 10
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.19 E-value=39 Score=17.54 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=8.9
Q ss_pred CCchhhhhhhc
Q psy666 6 THPASVLQELQ 16 (102)
Q Consensus 6 ~~~~~~~~~~~ 16 (102)
|||.|+..|.+
T Consensus 15 tdPSSLRKH~k 25 (29)
T d2glia5 15 TDPSSLRKHVK 25 (29)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 79999888764
Done!