RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy666
(102 letters)
>gnl|CDD|192478 pfam10189, DUF2356, Conserved protein (DUF2356). This is a 200
amino acid region of a family of proteins conserved from
plants to humans. Some members have been putatively
annotated as being integrator complex subunit 3 but this
could not be confirmed. The function is unknown.
Length = 230
Score = 140 bits (355), Expect = 2e-43
Identities = 58/78 (74%), Positives = 67/78 (85%)
Query: 22 YLSTTESQALRYDVIRFIVGVIHPTNELLCSDIIPRWAVIGWLLTSCTSPVVLANCKLAL 81
YL T ES++LR D+IRFI VIHPTN++LCSDIIPRWA+IGWLLTSC S V AN KLAL
Sbjct: 68 YLRTPESESLRPDIIRFICCVIHPTNKVLCSDIIPRWAIIGWLLTSCQSGVAQANAKLAL 127
Query: 82 FYDWLCYDPEKDNIMNID 99
FYDWL +DP+KDNIMNI+
Sbjct: 128 FYDWLFFDPKKDNIMNIE 145
>gnl|CDD|132863 cd07224, Pat_like, Patatin-like phospholipase. Patatin-like
phospholipase. This family consists of various patatin
glycoproteins from plants. The patatin protein accounts
for up to 40% of the total soluble protein in potato
tubers. Patatin is a storage protein, but it also has
the enzymatic activity of lipid acyl hydrolase,
catalysing the cleavage of fatty acids from membrane
lipids. Members of this family have been found also in
vertebrates.
Length = 233
Score = 29.6 bits (67), Expect = 0.20
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 49 LLCSDIIPRWAVIGWLLTSCTSPVVLANCKLALFYDWLCYD 89
LL S + +I LL SC P LA +F LC D
Sbjct: 114 LLVSSFDSKSDLIDALLASCNIPGYLAPWPATMFRGKLCVD 154
>gnl|CDD|145725 pfam02725, Paramyxo_NS_C, Non-structural protein C. This family
consists of the polymerase accessory protein C from
members of the paramyxoviridae.
Length = 165
Score = 27.5 bits (61), Expect = 1.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 23 LSTTESQALRYDVIRFIV 40
L ++ QAL+Y VI F++
Sbjct: 81 LERSKDQALQYSVIMFMI 98
>gnl|CDD|217404 pfam03173, CHB_HEX, Putative carbohydrate binding domain. This
domain represents the N terminal domain in chitobiases
and beta-hexosaminidases EC:3.2.1.52. It is composed of
a beta sandwich structure that is similar in structure
to the cellulose binding domain of cellulase from
Cellulomonas fimi. This suggests that this may be a
carbohydrate binding domain.
Length = 164
Score = 27.1 bits (60), Expect = 1.3
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 30 ALRYDVIRFIVGVIHPTNELLCSDIIPRWAVIGWLLTSCTSPV--VLANCKLALFYDWL- 86
AL Y ++ N L C + W + S +P VL A+++ +
Sbjct: 4 ALNYKLLDNGAA----ENPLDCPLMGADWGSCYKVELSLVNPGAAVLGESDWAIYFHSIR 59
Query: 87 -CYDPEKDNIMNIDQIN 102
E D I+ IN
Sbjct: 60 IILQVESDEF-AIEHIN 75
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 25.9 bits (57), Expect = 5.0
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 20 VWYLSTTESQALRYDVIRFIVGVIHPTNELLCSDIIPRWA---VIGWLLTSCTSPVVLAN 76
V + AL R I G+ + II +WA LL TS L
Sbjct: 122 VIPWAAGGGIALVV-FCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGT 180
Query: 77 CKLALFYDWLC 87
WLC
Sbjct: 181 FIFLPISGWLC 191
>gnl|CDD|233879 TIGR02468, sucrsPsyn_pln, sucrose phosphate synthase/possible
sucrose phosphate phosphatase, plant. Members of this
family are sucrose-phosphate synthases of plants. This
enzyme is known to exist in multigene families in
several species of both monocots and dicots. The
N-terminal domain is the glucosyltransferase domain.
Members of this family also have a variable linker
region and a C-terminal domain that resembles sucrose
phosphate phosphatase (SPP) (EC 3.1.3.24) (see
TIGR01485), the next and final enzyme of sucrose
biosynthesis. The SPP-like domain likely serves a
binding and not a catalytic function, as the reported
SPP is always encoded by a distinct protein.
Length = 1050
Score = 25.5 bits (56), Expect = 7.3
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 15 LQVLPVWYLSTTESQALRYDVIR 37
L V+P+ + SQALRY +R
Sbjct: 948 LNVIPL---LASRSQALRYLFVR 967
>gnl|CDD|215459 PLN02854, PLN02854, 3-ketoacyl-CoA synthase.
Length = 521
Score = 25.3 bits (55), Expect = 7.7
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 7 HPASVLQELQVLPVWYLSTTESQALRYDVI----RFIVGVIHPTNELLCSDIIPRWAVIG 62
+PA++L L +LP+ + + L +D + + L S + ++G
Sbjct: 47 NPATILFFLIILPLTIATLVQITGLEFDTVSELWSNQALHLDTATRLTGSAFL--LFLLG 104
Query: 63 WLLTSCTSPVVLANCKLALFYDWLCYDPEKDNIMNID 99
+ PV L D+ CY PE + +++D
Sbjct: 105 LYWAKRSKPVYLV--------DFACYKPEDERKISVD 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.477
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,270,745
Number of extensions: 427360
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 14
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)