BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6661
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPXXXXXXXX 67
PNIL+TGTPG GK+TL +E+ + L++I+V +ARE Q Y YDE+Y+CP
Sbjct: 5 PNILLTGTPGVGKTTLGKELASKS-GLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 63
Query: 68 XXXXPRVQGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQC 127
+++ GG I+DYH + FPERW V+VL D LY+RL +G + KKL DN+QC
Sbjct: 64 DELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQC 123
Query: 128 EIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVKQW 171
EIFQ + EEA SYKE+IV LPSN +++ +NV I+++++QW
Sbjct: 124 EIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 167
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPXXXXXXXX 67
PNIL+TGTPG GK+TL +E+ + L++I+V +ARE Q Y YDE+Y+CP
Sbjct: 12 PNILLTGTPGVGKTTLGKELASKS-GLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 70
Query: 68 XXXXPRVQGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQC 127
+++ GG I+DYH + FPERW V+VL D LY+RL +G + KKL DN+QC
Sbjct: 71 DELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQC 130
Query: 128 EIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVKQW 171
EIFQ + EEA SYKE+IV LPSN +++ +NV I+++++QW
Sbjct: 131 EIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 174
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPXXXXXXXXX 68
NILITGTPGTGK+++ E + + D + ++V K+ +EN FY +YD + +
Sbjct: 12 NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDR 71
Query: 69 X---XXP-RVQGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDN 124
P V G ++DYHS+E+FPERW V VL L++RL ++ S K +N
Sbjct: 72 LLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAEN 131
Query: 125 LQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVKQWK 172
++ EI EEARD+Y++DIV+ ++T + M++ V I + V+ K
Sbjct: 132 MEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLK 179
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 3 SKRTKPNILITGTPGTGKSTLCEEVVKQC 31
S+RTK N ++ G PG GK+ + E + +Q
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 1 MSSKRTKPNIL-ITGTPGTGKSTLCEEVVKQ 30
M K K NI+ + G PG+GK T CE++V++
Sbjct: 2 MEEKLKKTNIIFVVGGPGSGKGTQCEKIVQK 32
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP,
AND Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 5 RTKPNIL-ITGTPGTGKSTLCEEVVK 29
++KPN++ + G PG+GK T C +V+
Sbjct: 3 KSKPNVVFVLGGPGSGKGTQCANIVR 28
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN 46
M+SK + IL G PG+GK T+C+ + Q L+ + REN
Sbjct: 23 MASKLLRAVIL--GPPGSGKGTVCQRIA-QNFGLQHLSSGHFLREN 65
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 9 NILITGTPGTGKSTLCEEVVKQC 31
I+ITG PG GK+TL +++V++
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERL 24
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN 46
M+SK + IL G PG+GK T+C+ + Q L+ + REN
Sbjct: 1 MASKLLRAVIL--GPPGSGKGTVCQRIA-QNFGLQHLSSGHFLREN 43
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 11 LITGTPGTGKSTLCEEVVKQCDSLEWID 38
+ITG G GKST C+ + Q D+ +I+
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIE 33
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 29.6 bits (65), Expect = 0.77, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 3 SKRTKPNILITGTPGTGKSTLCEEVVKQ 30
S+RTK N ++ G PG GK+ + E + +Q
Sbjct: 197 SRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 10 ILITGTPGTGKSTLCEEVVK 29
I + G PG GK T CE++VK
Sbjct: 18 IFVLGGPGAGKGTQCEKLVK 37
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 16/18 (88%)
Query: 10 ILITGTPGTGKSTLCEEV 27
+++ G+PG+GKST+ EE+
Sbjct: 27 VILVGSPGSGKSTIAEEL 44
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase
At 2.1 Angstroms Resolution
Length = 195
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 10 ILITGTPGTGKSTLCEEVVKQ 30
I + G PG+GK T CE++V++
Sbjct: 12 IFVVGGPGSGKGTQCEKIVQK 32
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 7 KPNILITGTPGTGKSTLCEEVVKQ 30
K N+++ G PG+GK T CE + K+
Sbjct: 5 KHNLILIGAPGSGKGTQCEFIKKE 28
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARE 45
I +TG GTGKST+C E++K ++V++I E
Sbjct: 15 IGVTGKIGTGKSTVC-EILKNKYGAHVVNVDRIGHE 49
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From
Plasmodium Vivax
Length = 187
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 3 SKRTKPNILITGTPGTGKSTLCE 25
S+RTK N ++ G PG GK+ + E
Sbjct: 39 SRRTKNNPILLGDPGVGKTAIVE 61
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 86 AEMFPERW-------IDQVY----VLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTIL 134
AE FP+R ID +Y + + Y +K KKL D+ E+ + I+
Sbjct: 557 AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIV 616
Query: 135 EEARDSYKEDIV 146
E RD EDI+
Sbjct: 617 YEQRDVTDEDII 628
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 2 SSKRTKPNILITGTPGTGKSTLCEEVVKQCDS 33
+++ IL+ G PGTGKS L + V + +S
Sbjct: 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 2 SSKRTKPNILITGTPGTGKSTLCEEVVKQCDS 33
+++ IL+ G PGTGKS L + V + +S
Sbjct: 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 10 ILITGTPGTGKSTLCEEVVKQ 30
I I G PG+GK T CE++V++
Sbjct: 15 IFIIGGPGSGKGTQCEKLVEK 35
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 10 ILITGTPGTGKSTLCEEVVKQ 30
I + G PG+GK T CE++V++
Sbjct: 32 IFVLGGPGSGKGTQCEKLVQK 52
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence
Of Atpgammas
Length = 340
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 2 SSKRTKPNILITGTPGTGKSTLCEEVVKQCDS 33
+++ IL+ G PGTGKS L + V + +S
Sbjct: 64 GNRKPTSGILLYGPPGTGKSYLAKAVATEANS 95
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 2 SSKRTKPNILITGTPGTGKSTLCEEVVKQCDS 33
+++ IL+ G PGTGKS L + V + +S
Sbjct: 55 GNRKPTSGILLYGPPGTGKSYLAKAVATEANS 86
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIA 43
++++ G PGTGK+TL E + + ++ DV +I+
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYANA----DVERIS 82
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSL 34
+++TG PGTGKST + V +SL
Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESL 231
>pdb|4AC6|A Chain A, Corynebacterium Glutamicum Acnr Au Derivative Structure
pdb|4ACI|A Chain A, Structure Of The C. Glutamicum Acnr Crystal Form Ii
pdb|4ACI|B Chain B, Structure Of The C. Glutamicum Acnr Crystal Form Ii
Length = 191
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 88 MFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY 141
+F +WID VL R V+KGQ ++ ++ E+ T LE D +
Sbjct: 114 VFRAKWIDHQSVLDEAVRVRLSRNVDKGQ----MRTDVPIEVLHTFLETVLDGF 163
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
Length = 259
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 10 ILITGTPGTGKSTLCEEVVK 29
I++TG PG GKST + + K
Sbjct: 14 IILTGLPGVGKSTFSKNLAK 33
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With
Guanidinium Chloride And Adp
Length = 397
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 4 KRTKPNILITGTPGTGKSTLCEEVVKQC 31
+RTK N ++ G PG GK+ + E + ++
Sbjct: 51 RRTKNNPVLIGEPGVGKTAIVEGLAQRI 78
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 10 ILITGTPGTGKSTLCEEVVK 29
I++TG PG GKST + + K
Sbjct: 7 IILTGLPGVGKSTFSKNLAK 26
>pdb|4AF5|A Chain A, Structure Of The C. Glutamicum Acnr Crystal Form I
Length = 190
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 88 MFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY 141
+F +WID VL R V+KGQ ++ ++ E+ T LE D +
Sbjct: 113 VFRAKWIDHQSVLDEAVRVRLSRNVDKGQ----MRTDVPIEVLHTFLETVLDGF 162
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 1 MSSKRTK-PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVN 40
+ KRT IL+ G PGTGKS L + V + ++ + ++
Sbjct: 160 FTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With
Cytidine-Di- Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLEW 36
P I I G G GK TLC+ + ++L+W
Sbjct: 6 PVITIDGPSGAGKGTLCKAM---AEALQW 31
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From
E. Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From
E. Coli Complexed With Dcmp
Length = 227
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLEW 36
P I I G G GK TLC+ + ++L+W
Sbjct: 6 PVITIDGPSGAGKGTLCKAM---AEALQW 31
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLEW 36
P I I G G GK TLC+ + ++L+W
Sbjct: 6 PVITIDGPSGAGKGTLCKAM---AEALQW 31
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 1 MSSKRTK-PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVN 40
+ KRT IL+ G PGTGKS L + V + ++ + ++
Sbjct: 38 FTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYE 57
NI+ G G+GKSTL + K D L ++D + + E +F K E +E
Sbjct: 5 KNIVFIGFXGSGKSTLARALAKDLD-LVFLDSDFLI-EQKFNQKVSEIFE 52
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 10 ILITGTPGTGKSTLCEEVVKQCDSL 34
+LI G P GKSTL ++VK+ ++
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAI 28
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 4 KRTKPNILITGTPGTGKSTLCEEVVKQC 31
+RTK N ++ G PG GK+ + E + ++
Sbjct: 40 RRTKNNPVLIGEPGVGKTAIVEGLAQRI 67
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 11 LITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL 50
++TG PG GKST+ +V + D+ + I+ NKI F L
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDN-QGIN-NKIINYGDFML 42
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 9 NILITGTPGTGKSTLCEEVVK 29
N+++ G PG GK TL E +V+
Sbjct: 2 NLVLMGLPGAGKGTLGERIVE 22
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32
+K NIL+ G G+GK+ + + + K D
Sbjct: 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 8 PNILITGTPGTGKSTLCEEVVKQCDSLEW 36
P I + G G GK TLC+ + +SL W
Sbjct: 28 PVITVDGPSGAGKGTLCKAL---AESLNW 53
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38
++ P++L +G PGTGK+ + + W D
Sbjct: 35 RKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD 69
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From
Marinibacillus Marinus
Length = 216
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 9 NILITGTPGTGKSTLCEEVVKQ 30
NI++ G PG GK T E+++++
Sbjct: 2 NIVLMGLPGAGKGTQAEQIIEK 23
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38
++ P++L +G PGTGK+ + + W D
Sbjct: 35 RKNIPHLLFSGPPGTGKTATAIALARDLFGENWRD 69
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 14/55 (25%)
Query: 1 MSSKRTKPNI---LITGTPGTGKSTLCEEVVKQ-----------CDSLEWIDVNK 41
M +K KP LI G P GKSTL + K+ S +W+ V K
Sbjct: 111 MRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK 165
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 4 KRTKPNILITGTPGTGKSTLCEEVVKQ 30
+RTK N ++ G PG GK+ + E + ++
Sbjct: 188 RRTKNNPVLIGEPGVGKTAIVEGLAQR 214
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 12 ITGTPGTGKSTLCE 25
+TGTPG GKST E
Sbjct: 61 VTGTPGAGKSTFLE 74
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 9 NILITGTPGTGKSTLCEEVVKQ 30
NI++ G PG GK T E +V++
Sbjct: 2 NIVLMGLPGAGKGTQAERIVEK 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,023,991
Number of Sequences: 62578
Number of extensions: 186401
Number of successful extensions: 658
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 68
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)