Query psy6661
Match_columns 172
No_of_seqs 112 out of 1552
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 23:54:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3347|consensus 100.0 9.4E-36 2E-40 196.0 16.9 169 3-172 3-171 (176)
2 COG1936 Predicted nucleotide k 100.0 5E-30 1.1E-34 173.6 15.0 156 8-167 1-156 (180)
3 COG0703 AroK Shikimate kinase 99.9 1.9E-23 4.2E-28 143.0 8.8 154 7-170 2-168 (172)
4 PRK03839 putative kinase; Prov 99.9 8.4E-21 1.8E-25 133.5 16.2 150 9-169 2-152 (180)
5 PRK13949 shikimate kinase; Pro 99.9 1.2E-21 2.7E-26 136.2 8.9 149 8-167 2-168 (169)
6 PRK13948 shikimate kinase; Pro 99.9 4.3E-21 9.3E-26 134.5 11.1 154 4-170 7-175 (182)
7 PRK05057 aroK shikimate kinase 99.8 8.1E-21 1.8E-25 132.5 9.7 154 4-169 1-170 (172)
8 PRK00131 aroK shikimate kinase 99.8 1.4E-19 3.1E-24 126.3 13.8 156 4-169 1-170 (175)
9 PRK13947 shikimate kinase; Pro 99.8 2.2E-20 4.8E-25 130.3 9.5 148 7-166 1-163 (171)
10 COG1102 Cmk Cytidylate kinase 99.8 1.9E-19 4.2E-24 120.8 12.3 151 9-166 2-171 (179)
11 PRK13946 shikimate kinase; Pro 99.8 6.4E-19 1.4E-23 124.3 14.3 156 6-171 9-177 (184)
12 PRK04182 cytidylate kinase; Pr 99.8 1E-18 2.2E-23 122.7 13.7 157 9-170 2-173 (180)
13 PLN02199 shikimate kinase 99.8 2.1E-19 4.5E-24 132.9 10.3 155 6-169 101-287 (303)
14 PRK00625 shikimate kinase; Pro 99.8 1.3E-18 2.7E-23 121.2 9.6 144 9-168 2-171 (173)
15 PRK14021 bifunctional shikimat 99.8 1.5E-18 3.2E-23 140.1 9.2 157 5-169 4-175 (542)
16 PRK03731 aroL shikimate kinase 99.8 3.5E-17 7.6E-22 114.2 14.2 152 8-170 3-170 (171)
17 TIGR02173 cyt_kin_arch cytidyl 99.8 6.3E-17 1.4E-21 112.7 15.4 152 9-165 2-170 (171)
18 cd00464 SK Shikimate kinase (S 99.8 8.8E-18 1.9E-22 115.1 10.2 142 9-156 1-154 (154)
19 PRK14734 coaE dephospho-CoA ki 99.8 2.8E-17 6E-22 117.3 13.1 154 8-169 2-196 (200)
20 PRK14733 coaE dephospho-CoA ki 99.8 2.8E-17 6.2E-22 116.9 13.1 158 6-169 5-200 (204)
21 PLN02422 dephospho-CoA kinase 99.8 2.4E-17 5.2E-22 119.2 12.6 154 8-169 2-196 (232)
22 PTZ00451 dephospho-CoA kinase; 99.8 3.6E-17 7.7E-22 119.4 13.1 156 7-170 1-210 (244)
23 PRK00081 coaE dephospho-CoA ki 99.7 4.6E-17 1E-21 115.7 13.0 151 7-167 2-193 (194)
24 PRK14730 coaE dephospho-CoA ki 99.7 3.4E-17 7.3E-22 116.4 11.9 151 8-167 2-194 (195)
25 PRK14531 adenylate kinase; Pro 99.7 7.4E-17 1.6E-21 113.8 12.9 108 8-117 3-131 (183)
26 PRK14532 adenylate kinase; Pro 99.7 7.9E-17 1.7E-21 114.0 12.7 155 9-168 2-185 (188)
27 PRK06762 hypothetical protein; 99.7 2.4E-16 5.2E-21 109.4 13.7 149 7-168 2-162 (166)
28 PRK06217 hypothetical protein; 99.7 2.5E-16 5.3E-21 111.1 13.9 103 7-116 1-106 (183)
29 PRK04040 adenylate kinase; Pro 99.7 3.1E-16 6.8E-21 110.8 14.3 106 7-113 2-130 (188)
30 PRK08154 anaerobic benzoate ca 99.7 1.7E-16 3.6E-21 120.3 13.4 155 5-165 131-299 (309)
31 PRK13951 bifunctional shikimat 99.7 2.6E-17 5.5E-22 131.2 9.3 139 9-157 2-151 (488)
32 PRK08118 topology modulation p 99.7 6.1E-17 1.3E-21 112.4 9.3 97 7-114 1-99 (167)
33 PLN02200 adenylate kinase fami 99.7 7.9E-16 1.7E-20 112.2 15.2 161 6-168 42-225 (234)
34 PF01202 SKI: Shikimate kinase 99.7 4E-17 8.7E-22 112.5 7.7 142 16-169 1-158 (158)
35 PRK01184 hypothetical protein; 99.7 4.3E-16 9.3E-21 109.9 12.7 155 7-169 1-180 (184)
36 TIGR01360 aden_kin_iso1 adenyl 99.7 1.4E-15 2.9E-20 107.5 15.2 110 6-116 2-129 (188)
37 PRK13808 adenylate kinase; Pro 99.7 7.3E-16 1.6E-20 116.6 14.4 104 9-114 2-127 (333)
38 TIGR01359 UMP_CMP_kin_fam UMP- 99.7 2E-15 4.4E-20 106.3 15.2 106 9-116 1-126 (183)
39 PRK14530 adenylate kinase; Pro 99.7 2.4E-15 5.2E-20 108.6 15.5 107 7-115 3-127 (215)
40 COG0283 Cmk Cytidylate kinase 99.7 1.8E-15 3.9E-20 106.5 13.7 157 7-169 4-218 (222)
41 PRK14527 adenylate kinase; Pro 99.7 2E-15 4.3E-20 107.1 13.9 111 5-116 4-134 (191)
42 PRK14731 coaE dephospho-CoA ki 99.7 3.4E-15 7.3E-20 107.3 15.1 155 6-169 4-204 (208)
43 PRK14528 adenylate kinase; Pro 99.7 6.2E-16 1.4E-20 109.2 10.9 107 7-115 1-129 (186)
44 COG0237 CoaE Dephospho-CoA kin 99.7 9.1E-16 2E-20 108.9 11.7 154 6-169 1-194 (201)
45 PRK08233 hypothetical protein; 99.7 1.4E-15 2.9E-20 107.0 12.4 109 6-116 2-120 (182)
46 PRK03333 coaE dephospho-CoA ki 99.7 1.4E-15 3.1E-20 118.6 12.9 153 7-168 1-193 (395)
47 PRK08356 hypothetical protein; 99.7 3.1E-15 6.7E-20 106.5 12.7 156 7-168 5-193 (195)
48 PRK14732 coaE dephospho-CoA ki 99.7 4.3E-15 9.4E-20 105.6 13.1 151 9-169 1-192 (196)
49 PF01121 CoaE: Dephospho-CoA k 99.7 1.8E-15 3.9E-20 106.0 10.7 134 9-151 2-176 (180)
50 cd00227 CPT Chloramphenicol (C 99.6 3E-15 6.6E-20 104.8 11.7 150 7-168 2-174 (175)
51 PRK13477 bifunctional pantoate 99.6 3.6E-15 7.8E-20 118.8 13.4 157 5-169 282-502 (512)
52 PLN02674 adenylate kinase 99.6 6.5E-15 1.4E-19 107.4 13.5 109 5-115 29-159 (244)
53 KOG3220|consensus 99.6 2.4E-15 5.2E-20 104.5 10.5 155 7-169 1-196 (225)
54 KOG3079|consensus 99.6 1.6E-14 3.5E-19 99.1 14.1 113 4-117 5-136 (195)
55 COG1428 Deoxynucleoside kinase 99.6 1.1E-14 2.3E-19 102.4 13.4 78 92-169 125-211 (216)
56 PRK02496 adk adenylate kinase; 99.6 1.9E-14 4E-19 101.6 13.9 108 7-116 1-130 (184)
57 TIGR01351 adk adenylate kinase 99.6 1.9E-14 4E-19 103.6 14.0 106 9-115 1-125 (210)
58 PRK05541 adenylylsulfate kinas 99.6 3.2E-15 7E-20 104.7 9.5 156 1-169 1-171 (176)
59 TIGR00152 dephospho-CoA kinase 99.6 7.7E-15 1.7E-19 103.9 10.5 145 9-162 1-187 (188)
60 PRK00023 cmk cytidylate kinase 99.6 1.7E-14 3.7E-19 104.7 11.9 40 5-45 2-41 (225)
61 PRK00279 adk adenylate kinase; 99.6 2.5E-14 5.5E-19 103.3 12.6 106 9-115 2-128 (215)
62 PRK05480 uridine/cytidine kina 99.6 6.8E-14 1.5E-18 100.6 14.3 111 5-115 4-147 (209)
63 cd02020 CMPK Cytidine monophos 99.6 8.9E-15 1.9E-19 99.3 9.0 102 9-114 1-103 (147)
64 TIGR00017 cmk cytidylate kinas 99.6 5.5E-14 1.2E-18 101.4 13.3 149 8-166 3-215 (217)
65 cd02022 DPCK Dephospho-coenzym 99.6 1.9E-14 4.1E-19 101.2 10.4 103 9-115 1-143 (179)
66 COG3265 GntK Gluconate kinase 99.6 2.7E-14 5.8E-19 94.8 10.2 143 14-170 2-159 (161)
67 PF13207 AAA_17: AAA domain; P 99.6 3.6E-15 7.7E-20 98.2 5.7 104 9-114 1-110 (121)
68 PRK13975 thymidylate kinase; P 99.6 5.1E-14 1.1E-18 100.2 11.7 154 7-168 2-188 (196)
69 PRK07261 topology modulation p 99.6 1.1E-14 2.4E-19 101.6 8.0 96 8-114 1-99 (171)
70 PF13238 AAA_18: AAA domain; P 99.6 6.3E-15 1.4E-19 97.7 6.3 108 10-120 1-118 (129)
71 COG0529 CysC Adenylylsulfate k 99.6 6.6E-15 1.4E-19 100.5 6.2 154 5-169 21-190 (197)
72 PLN02459 probable adenylate ki 99.6 1.6E-13 3.4E-18 100.7 13.9 106 8-115 30-154 (261)
73 PRK10078 ribose 1,5-bisphospho 99.6 3.8E-14 8.3E-19 100.2 10.3 149 7-165 2-174 (186)
74 PTZ00088 adenylate kinase 1; P 99.6 1.9E-13 4.2E-18 99.2 14.1 107 7-115 6-131 (229)
75 PRK13973 thymidylate kinase; P 99.6 1.4E-13 2.9E-18 99.3 13.2 161 6-167 2-206 (213)
76 KOG3354|consensus 99.5 1.1E-13 2.5E-18 92.4 10.8 106 7-116 12-140 (191)
77 PRK09518 bifunctional cytidyla 99.5 6E-14 1.3E-18 117.0 11.4 38 8-46 2-39 (712)
78 PRK14526 adenylate kinase; Pro 99.5 2.1E-13 4.6E-18 98.0 12.6 105 9-115 2-123 (211)
79 PRK14529 adenylate kinase; Pro 99.5 2.2E-13 4.8E-18 98.3 12.3 105 9-115 2-127 (223)
80 PRK11860 bifunctional 3-phosph 99.5 1.6E-13 3.4E-18 113.7 12.3 155 7-169 442-654 (661)
81 cd01428 ADK Adenylate kinase ( 99.5 6.2E-14 1.3E-18 99.5 8.6 107 9-116 1-127 (194)
82 PRK05537 bifunctional sulfate 99.5 5E-14 1.1E-18 114.2 9.1 148 5-169 390-561 (568)
83 PRK03846 adenylylsulfate kinas 99.5 1.4E-13 3.1E-18 98.2 10.2 152 5-169 22-191 (198)
84 PRK05416 glmZ(sRNA)-inactivati 99.5 6.4E-13 1.4E-17 99.4 13.7 137 5-164 4-157 (288)
85 COG2019 AdkA Archaeal adenylat 99.5 1.8E-12 3.9E-17 87.9 14.2 159 6-169 3-187 (189)
86 TIGR01313 therm_gnt_kin carboh 99.5 3.5E-13 7.6E-18 93.2 10.6 105 10-115 1-115 (163)
87 PRK14737 gmk guanylate kinase; 99.5 1.2E-12 2.5E-17 92.5 12.9 149 5-164 2-181 (186)
88 PTZ00301 uridine kinase; Provi 99.5 5.3E-13 1.2E-17 95.7 11.2 112 5-116 1-149 (210)
89 PF13671 AAA_33: AAA domain; P 99.5 1.4E-13 3.1E-18 93.0 7.5 106 9-118 1-122 (143)
90 PRK06547 hypothetical protein; 99.5 3.8E-13 8.2E-18 93.7 9.3 108 5-116 13-140 (172)
91 cd02024 NRK1 Nicotinamide ribo 99.5 3.2E-13 6.9E-18 95.0 8.7 107 9-115 1-152 (187)
92 PF07931 CPT: Chloramphenicol 99.5 1E-12 2.2E-17 91.4 10.7 149 8-168 2-173 (174)
93 PRK00698 tmk thymidylate kinas 99.5 3.6E-12 7.8E-17 91.2 13.8 27 6-32 2-28 (205)
94 PRK00889 adenylylsulfate kinas 99.4 4.2E-13 9.1E-18 93.9 8.0 150 5-169 2-169 (175)
95 PRK12269 bifunctional cytidyla 99.4 5.1E-12 1.1E-16 106.3 15.3 41 5-46 32-72 (863)
96 COG0572 Udk Uridine kinase [Nu 99.4 3.1E-12 6.7E-17 91.1 11.8 108 7-115 8-149 (218)
97 PLN02842 nucleotide kinase 99.4 2.8E-12 6.1E-17 101.7 12.8 104 11-115 1-122 (505)
98 COG0194 Gmk Guanylate kinase [ 99.4 4.5E-12 9.8E-17 87.7 12.0 107 6-116 3-137 (191)
99 PRK14738 gmk guanylate kinase; 99.4 4.7E-12 1E-16 90.9 12.5 26 5-30 11-36 (206)
100 PRK06696 uridine kinase; Valid 99.4 3E-12 6.6E-17 93.0 11.6 108 5-115 20-168 (223)
101 TIGR02322 phosphon_PhnN phosph 99.4 1.2E-11 2.6E-16 86.9 14.2 25 8-32 2-26 (179)
102 PRK12338 hypothetical protein; 99.4 1.4E-11 3E-16 92.9 14.6 41 4-45 1-41 (319)
103 cd02030 NDUO42 NADH:Ubiquinone 99.4 7.6E-12 1.6E-16 90.6 12.8 46 93-138 142-187 (219)
104 cd02021 GntK Gluconate kinase 99.4 8.7E-13 1.9E-17 90.0 7.1 104 9-115 1-119 (150)
105 PF03668 ATP_bind_2: P-loop AT 99.4 1.7E-11 3.7E-16 90.5 14.2 133 7-165 1-154 (284)
106 cd02023 UMPK Uridine monophosp 99.4 9.5E-12 2.1E-16 88.7 12.2 107 9-115 1-140 (198)
107 cd01672 TMPK Thymidine monopho 99.4 3.2E-11 7E-16 85.7 14.9 30 8-38 1-33 (200)
108 TIGR00041 DTMP_kinase thymidyl 99.4 1E-11 2.2E-16 88.3 12.0 26 7-32 3-28 (195)
109 COG0563 Adk Adenylate kinase a 99.4 1.2E-11 2.6E-16 86.6 12.1 107 8-115 1-128 (178)
110 COG0125 Tmk Thymidylate kinase 99.4 1.4E-11 3E-16 88.0 11.7 161 5-166 1-202 (208)
111 PHA02530 pseT polynucleotide k 99.4 1.4E-11 3E-16 93.2 12.4 106 7-115 2-124 (300)
112 TIGR03574 selen_PSTK L-seryl-t 99.4 4.4E-12 9.5E-17 93.6 9.1 102 9-115 1-117 (249)
113 PRK09825 idnK D-gluconate kina 99.4 2.1E-11 4.5E-16 85.4 11.8 108 6-115 2-120 (176)
114 TIGR00235 udk uridine kinase. 99.4 2E-11 4.2E-16 87.7 11.7 110 5-115 4-147 (207)
115 TIGR00455 apsK adenylylsulfate 99.4 5.7E-12 1.2E-16 88.9 8.7 152 5-167 16-183 (184)
116 COG4088 Predicted nucleotide k 99.3 3.8E-12 8.3E-17 89.3 7.1 123 7-138 1-139 (261)
117 PRK07667 uridine kinase; Provi 99.3 1.2E-11 2.6E-16 87.9 9.8 107 7-115 17-160 (193)
118 PF00406 ADK: Adenylate kinase 99.3 5.2E-12 1.1E-16 86.3 7.6 100 12-113 1-122 (151)
119 KOG3877|consensus 99.3 2.3E-11 4.9E-16 88.8 11.1 159 6-165 70-292 (393)
120 PRK00300 gmk guanylate kinase; 99.3 7.7E-11 1.7E-15 84.4 13.0 29 4-32 2-30 (205)
121 PF00485 PRK: Phosphoribulokin 99.3 1.6E-11 3.4E-16 87.4 9.0 107 9-115 1-148 (194)
122 PRK12339 2-phosphoglycerate ki 99.3 1.6E-10 3.5E-15 82.2 13.4 40 6-46 2-41 (197)
123 PF01583 APS_kinase: Adenylyls 99.3 2.2E-12 4.8E-17 87.8 3.7 104 7-113 2-119 (156)
124 PRK11545 gntK gluconate kinase 99.3 7.7E-11 1.7E-15 81.6 11.1 101 13-116 1-113 (163)
125 cd01673 dNK Deoxyribonucleosid 99.3 8.5E-11 1.8E-15 83.4 10.3 29 9-38 1-29 (193)
126 TIGR03263 guanyl_kin guanylate 99.2 2.4E-10 5.1E-15 80.2 11.9 25 8-32 2-26 (180)
127 PRK05506 bifunctional sulfate 99.2 1.9E-11 4.2E-16 101.0 6.6 147 5-169 458-627 (632)
128 PLN02924 thymidylate kinase 99.2 3E-10 6.6E-15 82.2 11.5 28 5-32 14-41 (220)
129 PLN02348 phosphoribulokinase 99.2 1.4E-10 3.1E-15 89.4 10.2 110 6-115 48-204 (395)
130 PRK13974 thymidylate kinase; P 99.2 7.1E-10 1.5E-14 80.0 13.1 27 6-32 2-28 (212)
131 PHA00729 NTP-binding motif con 99.2 4E-11 8.8E-16 86.3 6.5 110 6-124 16-149 (226)
132 PRK07429 phosphoribulokinase; 99.2 2.7E-10 5.9E-15 86.9 11.0 43 1-43 1-46 (327)
133 PRK07933 thymidylate kinase; V 99.2 8.3E-10 1.8E-14 79.6 12.8 71 93-163 132-209 (213)
134 PRK09270 nucleoside triphospha 99.2 2.8E-10 6.1E-15 83.0 10.4 39 5-43 31-74 (229)
135 COG3709 Uncharacterized compon 99.2 1E-09 2.2E-14 74.3 11.8 108 6-116 4-137 (192)
136 PF00625 Guanylate_kin: Guanyl 99.2 4.6E-10 1E-14 79.1 10.7 26 7-32 2-27 (183)
137 cd02025 PanK Pantothenate kina 99.2 1.9E-10 4.1E-15 83.3 8.8 36 9-44 1-42 (220)
138 PF02223 Thymidylate_kin: Thym 99.2 7.5E-11 1.6E-15 83.3 6.5 66 93-159 118-184 (186)
139 smart00072 GuKc Guanylate kina 99.2 2.1E-09 4.5E-14 75.9 13.7 25 7-31 2-26 (184)
140 PRK13976 thymidylate kinase; P 99.2 1.2E-09 2.5E-14 78.6 12.2 72 93-167 124-201 (209)
141 PRK05439 pantothenate kinase; 99.1 4.5E-10 9.7E-15 84.8 9.5 111 5-115 84-238 (311)
142 cd02028 UMPK_like Uridine mono 99.1 9E-10 2E-14 77.4 8.9 106 9-115 1-140 (179)
143 KOG0635|consensus 99.1 3.8E-10 8.3E-15 75.5 6.3 104 4-113 28-148 (207)
144 COG2074 2-phosphoglycerate kin 99.1 8E-09 1.7E-13 74.8 13.4 41 4-45 86-126 (299)
145 TIGR00554 panK_bact pantothena 99.1 8E-10 1.7E-14 82.8 8.7 40 5-44 60-105 (290)
146 PF08433 KTI12: Chromatin asso 99.1 6.7E-10 1.4E-14 82.6 8.2 105 7-115 1-120 (270)
147 COG0645 Predicted kinase [Gene 99.0 1.1E-09 2.3E-14 74.8 7.5 107 8-115 2-125 (170)
148 COG1660 Predicted P-loop-conta 99.0 1.2E-08 2.7E-13 74.0 13.1 134 7-164 1-154 (286)
149 TIGR01663 PNK-3'Pase polynucle 99.0 3.3E-09 7.2E-14 85.3 11.2 93 5-116 367-470 (526)
150 cd02026 PRK Phosphoribulokinas 99.0 2.7E-09 5.9E-14 79.7 9.7 35 9-43 1-37 (273)
151 cd02027 APSK Adenosine 5'-phos 99.0 2.2E-09 4.8E-14 73.2 8.3 102 9-113 1-116 (149)
152 PLN02772 guanylate kinase 98.9 2E-08 4.4E-13 77.7 11.7 27 6-32 134-160 (398)
153 PRK12337 2-phosphoglycerate ki 98.9 6.5E-08 1.4E-12 76.3 13.9 37 6-43 254-291 (475)
154 PF06414 Zeta_toxin: Zeta toxi 98.9 1E-08 2.2E-13 73.2 8.7 110 5-114 13-141 (199)
155 PRK04220 2-phosphoglycerate ki 98.9 5.7E-08 1.2E-12 72.9 12.9 38 5-43 90-128 (301)
156 PRK15453 phosphoribulokinase; 98.9 2.2E-08 4.8E-13 74.3 9.5 40 5-44 3-46 (290)
157 PF13189 Cytidylate_kin2: Cyti 98.9 1.7E-08 3.6E-13 71.0 8.2 105 9-115 1-135 (179)
158 COG1072 CoaA Panthothenate kin 98.9 2.1E-08 4.4E-13 73.6 8.6 111 5-115 80-232 (283)
159 KOG3308|consensus 98.8 5.2E-08 1.1E-12 68.3 10.0 112 5-116 2-150 (225)
160 PLN02318 phosphoribulokinase/u 98.8 3.6E-08 7.8E-13 79.8 9.6 38 6-43 64-101 (656)
161 TIGR03575 selen_PSTK_euk L-ser 98.8 3.4E-08 7.3E-13 75.6 8.2 106 9-115 1-123 (340)
162 COG4639 Predicted kinase [Gene 98.8 1.3E-07 2.9E-12 63.7 9.3 104 8-115 3-118 (168)
163 KOG0744|consensus 98.7 1.5E-07 3.1E-12 70.7 9.8 29 7-36 177-205 (423)
164 PF00004 AAA: ATPase family as 98.7 1.7E-08 3.7E-13 66.9 4.2 29 10-39 1-29 (132)
165 COG3896 Chloramphenicol 3-O-ph 98.7 4E-07 8.6E-12 61.6 10.5 154 1-163 17-201 (205)
166 KOG3078|consensus 98.7 3.1E-08 6.8E-13 71.4 5.1 107 6-114 14-138 (235)
167 cd02019 NK Nucleoside/nucleoti 98.7 3.3E-08 7.1E-13 58.5 4.2 23 9-31 1-23 (69)
168 KOG0730|consensus 98.7 8.3E-08 1.8E-12 77.7 7.4 34 5-39 466-499 (693)
169 cd02029 PRK_like Phosphoribulo 98.6 3E-07 6.5E-12 67.9 9.0 36 9-44 1-40 (277)
170 PHA03132 thymidine kinase; Pro 98.6 7.7E-08 1.7E-12 77.9 6.2 30 7-37 257-286 (580)
171 PLN02165 adenylate isopentenyl 98.6 7.2E-08 1.6E-12 73.3 4.9 38 4-42 40-77 (334)
172 PRK00091 miaA tRNA delta(2)-is 98.5 1E-07 2.2E-12 72.2 4.6 37 5-42 2-38 (307)
173 PF08303 tRNA_lig_kinase: tRNA 98.5 3.1E-06 6.7E-11 57.9 10.5 33 10-42 2-34 (168)
174 KOG3327|consensus 98.5 3.7E-06 7.9E-11 58.4 10.5 157 4-168 2-196 (208)
175 PRK09169 hypothetical protein; 98.5 9.4E-07 2E-11 79.7 9.5 135 7-153 2110-2267(2316)
176 KOG0733|consensus 98.5 1.1E-06 2.4E-11 71.0 9.0 32 6-38 222-253 (802)
177 PF05496 RuvB_N: Holliday junc 98.5 2.4E-07 5.1E-12 66.6 4.6 32 6-38 49-80 (233)
178 KOG4235|consensus 98.5 2.4E-06 5.2E-11 59.8 9.2 45 94-138 154-198 (244)
179 PRK06761 hypothetical protein; 98.4 2.4E-07 5.2E-12 69.2 4.1 31 7-38 3-33 (282)
180 PLN02840 tRNA dimethylallyltra 98.4 3E-07 6.5E-12 72.1 4.6 37 5-42 19-55 (421)
181 COG1222 RPT1 ATP-dependent 26S 98.4 1E-06 2.2E-11 67.1 7.2 33 5-38 183-215 (406)
182 PF13521 AAA_28: AAA domain; P 98.4 2.1E-07 4.6E-12 64.3 3.2 33 9-45 1-33 (163)
183 KOG0733|consensus 98.4 9.9E-07 2.2E-11 71.3 7.2 31 7-38 545-575 (802)
184 PRK09087 hypothetical protein; 98.4 3E-06 6.5E-11 61.7 9.1 104 7-113 44-163 (226)
185 smart00382 AAA ATPases associa 98.4 3.7E-07 8E-12 60.5 3.7 26 7-32 2-27 (148)
186 TIGR00390 hslU ATP-dependent p 98.4 4.2E-07 9.1E-12 71.1 4.4 35 7-42 47-81 (441)
187 COG1618 Predicted nucleotide k 98.4 3.3E-07 7.1E-12 62.3 3.3 27 6-32 4-30 (179)
188 PTZ00322 6-phosphofructo-2-kin 98.4 1.1E-06 2.3E-11 73.5 6.7 34 5-39 213-246 (664)
189 PF07728 AAA_5: AAA domain (dy 98.3 5.5E-07 1.2E-11 60.5 3.7 28 9-37 1-28 (139)
190 KOG0734|consensus 98.3 6.1E-07 1.3E-11 71.5 4.4 31 7-38 337-367 (752)
191 COG3911 Predicted ATPase [Gene 98.3 8.2E-07 1.8E-11 59.6 3.9 32 4-37 6-37 (183)
192 PRK05201 hslU ATP-dependent pr 98.3 7.2E-07 1.6E-11 69.8 4.0 35 7-42 50-84 (443)
193 PHA02575 1 deoxynucleoside mon 98.3 1.1E-06 2.4E-11 63.2 4.6 36 9-46 2-38 (227)
194 PRK06851 hypothetical protein; 98.3 5.3E-07 1.2E-11 69.7 3.2 26 7-32 30-55 (367)
195 PRK05800 cobU adenosylcobinami 98.3 9.3E-07 2E-11 61.6 4.0 28 8-36 2-29 (170)
196 smart00763 AAA_PrkA PrkA AAA d 98.3 7.1E-07 1.5E-11 68.6 3.7 28 6-33 77-104 (361)
197 PRK10751 molybdopterin-guanine 98.3 8.9E-07 1.9E-11 61.6 3.8 31 1-32 1-31 (173)
198 TIGR02881 spore_V_K stage V sp 98.3 9.4E-07 2E-11 65.7 4.0 26 6-31 41-66 (261)
199 KOG0731|consensus 98.3 2.3E-06 5E-11 71.1 6.3 31 7-38 344-374 (774)
200 KOG3062|consensus 98.3 9E-06 2E-10 58.3 8.4 109 7-116 1-124 (281)
201 TIGR00174 miaA tRNA isopenteny 98.3 1.2E-06 2.6E-11 65.8 4.2 33 9-42 1-33 (287)
202 KOG1384|consensus 98.2 5E-06 1.1E-10 62.6 7.4 36 6-42 6-41 (348)
203 PLN02748 tRNA dimethylallyltra 98.2 1.5E-06 3.3E-11 69.2 4.9 36 5-41 20-55 (468)
204 TIGR00150 HI0065_YjeE ATPase, 98.2 1.6E-06 3.4E-11 57.8 4.2 30 5-35 20-49 (133)
205 PHA03136 thymidine kinase; Pro 98.2 3.9E-06 8.4E-11 64.7 6.7 26 94-119 192-217 (378)
206 PF03266 NTPase_1: NTPase; In 98.2 1.2E-06 2.6E-11 60.9 3.5 23 9-31 1-23 (168)
207 KOG4238|consensus 98.2 8.3E-07 1.8E-11 67.6 2.9 153 6-169 49-219 (627)
208 PF03215 Rad17: Rad17 cell cyc 98.2 1.8E-06 3.8E-11 69.9 4.8 32 6-38 44-75 (519)
209 COG2256 MGS1 ATPase related to 98.2 1.2E-06 2.5E-11 67.6 3.5 35 6-41 47-81 (436)
210 TIGR01243 CDC48 AAA family ATP 98.2 1.3E-05 2.8E-10 67.9 10.0 32 7-39 487-518 (733)
211 PRK06851 hypothetical protein; 98.2 1.1E-06 2.4E-11 67.9 3.2 25 7-31 214-238 (367)
212 cd00009 AAA The AAA+ (ATPases 98.2 2.3E-06 5E-11 57.1 4.3 26 6-31 18-43 (151)
213 CHL00195 ycf46 Ycf46; Provisio 98.2 2E-06 4.3E-11 69.2 4.5 33 6-39 258-290 (489)
214 cd00071 GMPK Guanosine monopho 98.2 1.6E-06 3.4E-11 58.3 3.3 24 9-32 1-24 (137)
215 TIGR02640 gas_vesic_GvpN gas v 98.2 2.1E-06 4.6E-11 63.9 4.3 31 6-37 20-50 (262)
216 PRK03992 proteasome-activating 98.2 2.1E-06 4.6E-11 67.4 4.3 32 6-38 164-195 (389)
217 TIGR01650 PD_CobS cobaltochela 98.2 1.9E-06 4.1E-11 65.5 3.9 30 7-37 64-93 (327)
218 PF10662 PduV-EutP: Ethanolami 98.2 1.7E-06 3.6E-11 58.2 3.2 24 7-30 1-24 (143)
219 PF01712 dNK: Deoxynucleoside 98.2 9.3E-07 2E-11 60.1 1.9 72 94-165 68-142 (146)
220 PF01745 IPT: Isopentenyl tran 98.2 1.9E-06 4.2E-11 61.3 3.4 35 7-42 1-35 (233)
221 KOG0707|consensus 98.1 4.3E-05 9.3E-10 55.0 10.1 28 6-33 36-63 (231)
222 PRK08099 bifunctional DNA-bind 98.1 2.6E-06 5.7E-11 66.9 4.4 32 6-38 218-249 (399)
223 PRK05342 clpX ATP-dependent pr 98.1 2.6E-06 5.7E-11 67.1 4.2 33 7-40 108-140 (412)
224 PLN00020 ribulose bisphosphate 98.1 3.3E-06 7.1E-11 65.1 4.3 33 5-38 146-178 (413)
225 COG1126 GlnQ ABC-type polar am 98.1 2.5E-06 5.5E-11 60.8 3.4 24 5-28 26-49 (240)
226 PTZ00454 26S protease regulato 98.1 4E-06 8.6E-11 65.9 4.7 32 6-38 178-209 (398)
227 cd01918 HprK_C HprK/P, the bif 98.1 3.9E-06 8.4E-11 56.9 4.0 34 7-42 14-47 (149)
228 PF01591 6PF2K: 6-phosphofruct 98.1 1.7E-05 3.7E-10 57.4 7.4 41 6-46 11-55 (222)
229 TIGR01242 26Sp45 26S proteasom 98.1 4.3E-06 9.3E-11 65.1 4.7 31 7-38 156-186 (364)
230 CHL00181 cbbX CbbX; Provisiona 98.1 3.6E-06 7.8E-11 63.5 4.1 26 6-31 58-83 (287)
231 PF07724 AAA_2: AAA domain (Cd 98.1 3.5E-06 7.5E-11 58.8 3.7 27 6-32 2-28 (171)
232 COG4619 ABC-type uncharacteriz 98.1 3.6E-06 7.9E-11 57.9 3.3 27 5-31 27-53 (223)
233 KOG0743|consensus 98.1 3E-06 6.6E-11 66.2 3.3 30 8-38 236-265 (457)
234 TIGR01241 FtsH_fam ATP-depende 98.1 4.8E-06 1.1E-10 67.4 4.6 33 6-39 87-119 (495)
235 TIGR00382 clpX endopeptidase C 98.1 5.2E-06 1.1E-10 65.3 4.4 31 8-39 117-147 (413)
236 PRK04195 replication factor C 98.1 5.2E-06 1.1E-10 67.0 4.4 32 7-39 39-70 (482)
237 PF13555 AAA_29: P-loop contai 98.0 5.5E-06 1.2E-10 47.5 3.3 23 8-30 24-46 (62)
238 PF13245 AAA_19: Part of AAA d 98.0 5.8E-06 1.3E-10 49.7 3.5 25 7-31 10-35 (76)
239 TIGR00635 ruvB Holliday juncti 98.0 6.5E-06 1.4E-10 62.5 4.6 29 7-36 30-58 (305)
240 PF13401 AAA_22: AAA domain; P 98.0 3.8E-06 8.2E-11 55.6 2.9 27 5-31 2-28 (131)
241 TIGR01526 nadR_NMN_Atrans nico 98.0 5.7E-06 1.2E-10 63.4 4.2 31 7-38 162-192 (325)
242 PRK14729 miaA tRNA delta(2)-is 98.0 8E-06 1.7E-10 61.7 4.8 37 4-42 1-37 (300)
243 PRK11784 tRNA 2-selenouridine 98.0 2.5E-05 5.4E-10 60.3 7.6 106 6-114 140-256 (345)
244 PHA02244 ATPase-like protein 98.0 5.9E-06 1.3E-10 63.8 4.2 36 6-42 118-153 (383)
245 PF07726 AAA_3: ATPase family 98.0 3.5E-06 7.5E-11 55.5 2.5 28 9-37 1-28 (131)
246 COG1703 ArgK Putative periplas 98.0 4.6E-06 1E-10 62.2 3.4 27 5-31 49-75 (323)
247 PRK06620 hypothetical protein; 98.0 5.8E-06 1.3E-10 59.7 3.8 30 8-38 45-74 (214)
248 PF00910 RNA_helicase: RNA hel 98.0 4E-06 8.7E-11 53.9 2.7 23 10-32 1-23 (107)
249 PLN02796 D-glycerate 3-kinase 98.0 6.3E-06 1.4E-10 63.1 4.1 38 6-43 99-140 (347)
250 PTZ00361 26 proteosome regulat 98.0 7.7E-06 1.7E-10 64.9 4.7 32 6-38 216-247 (438)
251 PRK00080 ruvB Holliday junctio 98.0 7.4E-06 1.6E-10 63.0 4.4 31 6-37 50-80 (328)
252 KOG1970|consensus 98.0 5.8E-06 1.3E-10 66.2 3.8 32 6-38 109-140 (634)
253 PRK13342 recombination factor 98.0 7.8E-06 1.7E-10 64.7 4.5 32 6-38 35-66 (413)
254 COG1223 Predicted ATPase (AAA+ 98.0 6.7E-06 1.4E-10 60.4 3.7 33 5-38 149-181 (368)
255 cd00820 PEPCK_HprK Phosphoenol 98.0 9.6E-06 2.1E-10 51.9 4.0 34 6-42 14-47 (107)
256 PF13173 AAA_14: AAA domain 98.0 1.1E-05 2.4E-10 53.5 4.4 38 7-44 2-42 (128)
257 PRK10733 hflB ATP-dependent me 98.0 2.2E-05 4.8E-10 65.5 7.0 32 7-39 185-216 (644)
258 COG0324 MiaA tRNA delta(2)-iso 98.0 1.1E-05 2.3E-10 61.0 4.6 36 6-42 2-37 (308)
259 KOG0991|consensus 98.0 6.2E-06 1.3E-10 59.7 3.2 27 5-31 46-72 (333)
260 PF05729 NACHT: NACHT domain 98.0 6.8E-06 1.5E-10 56.3 3.3 25 8-32 1-25 (166)
261 PF13191 AAA_16: AAA ATPase do 98.0 5.8E-06 1.3E-10 57.9 3.0 28 5-32 22-49 (185)
262 PF02367 UPF0079: Uncharacteri 98.0 8.2E-06 1.8E-10 53.6 3.4 30 5-35 13-42 (123)
263 PF03308 ArgK: ArgK protein; 98.0 5.3E-06 1.2E-10 60.8 2.7 27 5-31 27-53 (266)
264 TIGR03420 DnaA_homol_Hda DnaA 97.9 1.4E-05 3.1E-10 57.9 4.7 38 6-43 37-78 (226)
265 PF06068 TIP49: TIP49 C-termin 97.9 1.3E-05 2.8E-10 61.7 4.6 34 5-38 48-82 (398)
266 PRK08903 DnaA regulatory inact 97.9 1.5E-05 3.2E-10 58.0 4.8 37 6-43 41-82 (227)
267 CHL00176 ftsH cell division pr 97.9 1.1E-05 2.4E-10 66.9 4.5 33 6-39 215-247 (638)
268 COG1136 SalX ABC-type antimicr 97.9 9.6E-06 2.1E-10 58.6 3.6 25 5-29 29-53 (226)
269 cd01131 PilT Pilus retraction 97.9 8.7E-06 1.9E-10 58.1 3.4 25 8-32 2-26 (198)
270 COG1116 TauB ABC-type nitrate/ 97.9 9.9E-06 2.1E-10 59.0 3.6 26 5-30 27-52 (248)
271 PRK06893 DNA replication initi 97.9 1.3E-05 2.9E-10 58.4 4.4 33 7-40 39-76 (229)
272 PLN03046 D-glycerate 3-kinase; 97.9 1.1E-05 2.3E-10 63.3 4.0 39 6-44 211-253 (460)
273 KOG0739|consensus 97.9 2.7E-05 5.8E-10 58.4 5.7 31 7-38 166-196 (439)
274 TIGR02880 cbbX_cfxQ probable R 97.9 1.2E-05 2.7E-10 60.5 4.0 25 7-31 58-82 (284)
275 COG0464 SpoVK ATPases of the A 97.9 1.4E-05 3.1E-10 64.7 4.6 33 6-39 275-307 (494)
276 TIGR03015 pepcterm_ATPase puta 97.9 1.3E-05 2.8E-10 59.7 4.0 26 7-32 43-68 (269)
277 KOG0736|consensus 97.9 2.2E-05 4.8E-10 65.2 5.5 33 5-38 703-735 (953)
278 TIGR01223 Pmev_kin_anim phosph 97.9 8E-05 1.7E-09 51.7 7.5 150 9-170 1-180 (182)
279 PF03205 MobB: Molybdopterin g 97.9 1E-05 2.3E-10 54.5 3.1 24 8-31 1-24 (140)
280 PLN03025 replication factor C 97.9 1.2E-05 2.6E-10 61.5 3.8 26 6-31 33-58 (319)
281 TIGR03689 pup_AAA proteasome A 97.9 1.1E-05 2.5E-10 65.0 3.7 27 6-32 215-241 (512)
282 COG1124 DppF ABC-type dipeptid 97.9 1.2E-05 2.7E-10 58.2 3.4 25 6-30 32-56 (252)
283 cd03116 MobB Molybdenum is an 97.9 1.3E-05 2.9E-10 55.2 3.3 26 7-32 1-26 (159)
284 cd01130 VirB11-like_ATPase Typ 97.8 2E-05 4.4E-10 55.6 3.8 28 5-32 23-50 (186)
285 TIGR01243 CDC48 AAA family ATP 97.8 2.3E-05 4.9E-10 66.4 4.5 32 6-38 211-242 (733)
286 TIGR03707 PPK2_P_aer polyphosp 97.8 0.00086 1.9E-08 48.9 12.0 31 6-37 30-60 (230)
287 PF03029 ATP_bind_1: Conserved 97.8 1.2E-05 2.5E-10 59.1 2.4 21 12-32 1-21 (238)
288 COG0466 Lon ATP-dependent Lon 97.8 2.1E-05 4.6E-10 64.8 4.1 34 4-38 347-380 (782)
289 PRK09435 membrane ATPase/prote 97.8 1.9E-05 4.2E-10 60.5 3.6 27 5-31 54-80 (332)
290 COG0465 HflB ATP-dependent Zn 97.8 6.2E-05 1.3E-09 61.5 6.6 32 6-38 182-213 (596)
291 COG3839 MalK ABC-type sugar tr 97.8 1.9E-05 4.2E-10 60.4 3.5 25 6-30 28-52 (338)
292 COG2884 FtsE Predicted ATPase 97.8 2E-05 4.3E-10 55.3 3.2 26 5-30 26-51 (223)
293 PRK08084 DNA replication initi 97.8 2.3E-05 5.1E-10 57.4 3.8 37 6-42 44-84 (235)
294 COG1855 ATPase (PilT family) [ 97.8 1.6E-05 3.5E-10 62.4 3.0 26 7-32 263-288 (604)
295 cd00544 CobU Adenosylcobinamid 97.8 2.8E-05 6E-10 54.1 3.9 24 9-32 1-24 (169)
296 KOG0737|consensus 97.8 1.9E-05 4.1E-10 60.4 3.3 33 5-38 125-157 (386)
297 PRK10646 ADP-binding protein; 97.8 3.4E-05 7.3E-10 52.6 4.2 28 6-34 27-54 (153)
298 cd03115 SRP The signal recogni 97.8 2.2E-05 4.7E-10 54.7 3.4 34 9-42 2-39 (173)
299 TIGR01618 phage_P_loop phage n 97.8 1.8E-05 3.8E-10 57.3 3.0 33 7-42 12-44 (220)
300 PRK12402 replication factor C 97.8 2.4E-05 5.2E-10 60.1 3.9 26 7-32 36-61 (337)
301 PF07475 Hpr_kinase_C: HPr Ser 97.8 2.9E-05 6.2E-10 53.6 3.8 34 7-42 18-51 (171)
302 COG3842 PotA ABC-type spermidi 97.8 2.1E-05 4.6E-10 60.5 3.5 25 5-29 29-53 (352)
303 PRK15455 PrkA family serine pr 97.8 1.8E-05 3.8E-10 64.4 3.2 33 5-37 101-133 (644)
304 PRK13341 recombination factor 97.8 2.8E-05 6.1E-10 65.4 4.5 35 6-41 51-85 (725)
305 PRK14962 DNA polymerase III su 97.8 2E-05 4.3E-10 63.3 3.5 25 8-32 37-61 (472)
306 cd01120 RecA-like_NTPases RecA 97.8 1.9E-05 4.2E-10 53.8 3.0 23 9-31 1-23 (165)
307 COG5324 Uncharacterized conser 97.8 0.00041 8.9E-09 55.1 10.4 34 8-42 375-408 (758)
308 TIGR00763 lon ATP-dependent pr 97.8 2.7E-05 5.8E-10 66.4 4.3 32 6-38 346-377 (775)
309 PRK13695 putative NTPase; Prov 97.8 2.4E-05 5.3E-10 54.6 3.4 23 9-31 2-24 (174)
310 PF03976 PPK2: Polyphosphate k 97.8 0.00042 9.2E-09 50.4 9.8 25 8-32 32-56 (228)
311 COG1763 MobB Molybdopterin-gua 97.8 2.5E-05 5.3E-10 53.7 3.1 27 6-32 1-27 (161)
312 COG0378 HypB Ni2+-binding GTPa 97.8 2.7E-05 5.9E-10 54.7 3.3 36 7-43 13-52 (202)
313 PRK14961 DNA polymerase III su 97.8 2.4E-05 5.3E-10 60.9 3.4 27 8-35 39-65 (363)
314 PRK05339 PEP synthetase regula 97.8 0.00054 1.2E-08 50.8 10.2 114 9-165 145-262 (269)
315 PRK06526 transposase; Provisio 97.8 2.6E-05 5.6E-10 57.8 3.3 26 6-31 97-122 (254)
316 PF08477 Miro: Miro-like prote 97.8 3E-05 6.5E-10 50.3 3.3 23 9-31 1-23 (119)
317 PRK14493 putative bifunctional 97.7 2.8E-05 6E-10 58.2 3.4 26 7-32 1-26 (274)
318 KOG2004|consensus 97.7 3E-05 6.6E-10 64.0 3.9 33 4-37 435-467 (906)
319 cd03238 ABC_UvrA The excision 97.7 3.3E-05 7.2E-10 54.1 3.5 25 5-29 19-43 (176)
320 COG2255 RuvB Holliday junction 97.7 3.2E-05 6.9E-10 57.4 3.5 30 7-37 52-81 (332)
321 PF00005 ABC_tran: ABC transpo 97.7 2.6E-05 5.7E-10 52.0 2.9 26 6-31 10-35 (137)
322 TIGR00101 ureG urease accessor 97.7 3.4E-05 7.3E-10 55.1 3.6 25 8-32 2-26 (199)
323 PHA02544 44 clamp loader, smal 97.7 3.4E-05 7.3E-10 58.9 3.7 30 7-37 43-72 (316)
324 COG1117 PstB ABC-type phosphat 97.7 3.1E-05 6.7E-10 55.3 3.2 26 5-30 31-56 (253)
325 KOG1969|consensus 97.7 4.3E-05 9.4E-10 63.2 4.4 33 5-38 324-356 (877)
326 PRK14956 DNA polymerase III su 97.7 3.1E-05 6.6E-10 62.0 3.5 26 9-35 42-67 (484)
327 CHL00206 ycf2 Ycf2; Provisiona 97.7 3.7E-05 8.1E-10 69.6 4.3 37 6-43 1629-1667(2281)
328 PRK11331 5-methylcytosine-spec 97.7 3.3E-05 7.1E-10 61.2 3.6 27 6-32 193-219 (459)
329 PF00448 SRP54: SRP54-type pro 97.7 2.7E-05 5.8E-10 55.5 2.8 36 7-42 1-40 (196)
330 TIGR01166 cbiO cobalt transpor 97.7 3.7E-05 7.9E-10 54.4 3.6 27 5-31 16-42 (190)
331 TIGR00960 3a0501s02 Type II (G 97.7 3.6E-05 7.7E-10 55.6 3.6 26 6-31 28-53 (216)
332 PRK13851 type IV secretion sys 97.7 2.9E-05 6.3E-10 59.9 3.2 27 6-32 161-187 (344)
333 cd03292 ABC_FtsE_transporter F 97.7 3.8E-05 8.3E-10 55.3 3.6 26 6-31 26-51 (214)
334 COG0714 MoxR-like ATPases [Gen 97.7 4.8E-05 1E-09 58.5 4.3 32 6-38 42-73 (329)
335 TIGR00176 mobB molybdopterin-g 97.7 3.5E-05 7.5E-10 52.9 3.2 23 9-31 1-23 (155)
336 KOG2702|consensus 97.7 9.8E-05 2.1E-09 53.4 5.5 26 6-31 118-143 (323)
337 PF01078 Mg_chelatase: Magnesi 97.7 3.3E-05 7.2E-10 55.1 3.1 27 7-33 22-48 (206)
338 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 3.9E-05 8.6E-10 55.4 3.6 26 6-31 29-54 (218)
339 cd03269 ABC_putative_ATPase Th 97.7 4E-05 8.7E-10 55.1 3.6 27 5-31 24-50 (210)
340 COG4185 Uncharacterized protei 97.7 0.00077 1.7E-08 46.1 9.4 39 8-46 3-42 (187)
341 KOG0735|consensus 97.7 0.00033 7.2E-09 58.1 9.0 32 6-38 700-731 (952)
342 KOG0726|consensus 97.7 3.8E-05 8.3E-10 57.4 3.4 33 5-38 217-249 (440)
343 PRK09183 transposase/IS protei 97.7 4.2E-05 9E-10 56.9 3.6 25 6-30 101-125 (259)
344 COG1224 TIP49 DNA helicase TIP 97.7 5.8E-05 1.2E-09 57.8 4.3 33 5-37 63-96 (450)
345 TIGR02673 FtsE cell division A 97.7 4.2E-05 9.2E-10 55.1 3.6 27 5-31 26-52 (214)
346 cd03225 ABC_cobalt_CbiO_domain 97.7 4.3E-05 9.4E-10 54.9 3.5 27 5-31 25-51 (211)
347 cd04163 Era Era subfamily. Er 97.7 3.2E-05 7E-10 52.6 2.7 25 6-30 2-26 (168)
348 KOG0738|consensus 97.7 4.9E-05 1.1E-09 58.8 3.8 30 8-38 246-275 (491)
349 PRK04296 thymidine kinase; Pro 97.7 3.6E-05 7.8E-10 54.6 3.0 25 7-31 2-26 (190)
350 cd03226 ABC_cobalt_CbiO_domain 97.7 4.4E-05 9.6E-10 54.6 3.5 27 5-31 24-50 (205)
351 cd03261 ABC_Org_Solvent_Resist 97.7 4.5E-05 9.7E-10 55.8 3.6 27 5-31 24-50 (235)
352 PF03193 DUF258: Protein of un 97.7 4.6E-05 1E-09 52.4 3.4 24 7-30 35-58 (161)
353 PRK12377 putative replication 97.7 4.5E-05 9.7E-10 56.3 3.5 39 7-45 101-143 (248)
354 cd03262 ABC_HisP_GlnQ_permease 97.7 4.8E-05 1.1E-09 54.7 3.6 27 5-31 24-50 (213)
355 TIGR02315 ABC_phnC phosphonate 97.7 4.7E-05 1E-09 55.9 3.6 27 5-31 26-52 (243)
356 PRK06645 DNA polymerase III su 97.7 4.4E-05 9.5E-10 61.8 3.7 28 7-35 43-70 (507)
357 TIGR00750 lao LAO/AO transport 97.7 5E-05 1.1E-09 57.7 3.8 27 5-31 32-58 (300)
358 COG0802 Predicted ATPase or ki 97.7 6.8E-05 1.5E-09 50.6 4.0 27 6-32 24-50 (149)
359 PRK11034 clpA ATP-dependent Cl 97.7 5.3E-05 1.1E-09 64.1 4.2 30 8-38 489-518 (758)
360 cd03224 ABC_TM1139_LivF_branch 97.7 4.3E-05 9.3E-10 55.3 3.3 27 5-31 24-50 (222)
361 cd03235 ABC_Metallic_Cations A 97.7 4.3E-05 9.4E-10 55.0 3.3 27 5-31 23-49 (213)
362 cd03222 ABC_RNaseL_inhibitor T 97.7 4.8E-05 1E-09 53.3 3.4 27 5-31 23-49 (177)
363 TIGR00064 ftsY signal recognit 97.7 4.8E-05 1E-09 57.0 3.6 38 5-42 70-111 (272)
364 PRK12724 flagellar biosynthesi 97.7 5.5E-05 1.2E-09 59.6 4.0 37 6-42 222-263 (432)
365 PRK13768 GTPase; Provisional 97.7 4.1E-05 8.9E-10 56.7 3.2 25 7-31 2-26 (253)
366 cd03293 ABC_NrtD_SsuB_transpor 97.7 4.5E-05 9.9E-10 55.2 3.4 26 6-31 29-54 (220)
367 cd03259 ABC_Carb_Solutes_like 97.7 5E-05 1.1E-09 54.7 3.6 26 6-31 25-50 (213)
368 KOG0989|consensus 97.7 5E-05 1.1E-09 56.9 3.6 30 5-35 55-84 (346)
369 PF01926 MMR_HSR1: 50S ribosom 97.7 4.2E-05 9.1E-10 49.6 2.9 21 9-29 1-21 (116)
370 cd03260 ABC_PstB_phosphate_tra 97.6 5.2E-05 1.1E-09 55.1 3.6 26 6-31 25-50 (227)
371 cd03283 ABC_MutS-like MutS-lik 97.6 4.5E-05 9.8E-10 54.5 3.2 23 7-29 25-47 (199)
372 cd03263 ABC_subfamily_A The AB 97.6 5.1E-05 1.1E-09 54.9 3.6 27 5-31 26-52 (220)
373 TIGR03708 poly_P_AMP_trns poly 97.6 0.0014 3.1E-08 52.8 11.9 28 5-32 38-65 (493)
374 cd03256 ABC_PhnC_transporter A 97.6 5.1E-05 1.1E-09 55.6 3.6 27 5-31 25-51 (241)
375 cd03229 ABC_Class3 This class 97.6 5.6E-05 1.2E-09 53.0 3.6 26 6-31 25-50 (178)
376 TIGR03709 PPK2_rel_1 polyphosp 97.6 0.002 4.3E-08 47.9 11.8 27 6-32 55-81 (264)
377 TIGR02211 LolD_lipo_ex lipopro 97.6 5.4E-05 1.2E-09 54.8 3.6 27 5-31 29-55 (221)
378 cd03264 ABC_drug_resistance_li 97.6 4.9E-05 1.1E-09 54.6 3.4 23 9-31 27-49 (211)
379 cd03219 ABC_Mj1267_LivG_branch 97.6 4.6E-05 1E-09 55.7 3.3 27 5-31 24-50 (236)
380 COG1219 ClpX ATP-dependent pro 97.6 6.2E-05 1.4E-09 56.8 3.9 33 7-40 97-129 (408)
381 cd03301 ABC_MalK_N The N-termi 97.6 5.6E-05 1.2E-09 54.4 3.6 27 5-31 24-50 (213)
382 PRK10416 signal recognition pa 97.6 5.1E-05 1.1E-09 58.0 3.5 36 6-41 113-152 (318)
383 cd03230 ABC_DR_subfamily_A Thi 97.6 5.7E-05 1.2E-09 52.7 3.5 26 6-31 25-50 (173)
384 cd03258 ABC_MetN_methionine_tr 97.6 5.6E-05 1.2E-09 55.2 3.6 27 5-31 29-55 (233)
385 PRK13833 conjugal transfer pro 97.6 5.2E-05 1.1E-09 58.0 3.5 25 7-31 144-168 (323)
386 PF02224 Cytidylate_kin: Cytid 97.6 0.0014 3E-08 44.8 10.0 91 71-166 57-157 (157)
387 TIGR03608 L_ocin_972_ABC putat 97.6 5.6E-05 1.2E-09 54.1 3.5 26 6-31 23-48 (206)
388 cd03223 ABCD_peroxisomal_ALDP 97.6 6.3E-05 1.4E-09 52.1 3.6 27 5-31 25-51 (166)
389 TIGR03410 urea_trans_UrtE urea 97.6 5.6E-05 1.2E-09 55.1 3.5 27 5-31 24-50 (230)
390 PF06309 Torsin: Torsin; Inte 97.6 5.9E-05 1.3E-09 49.5 3.2 27 5-31 51-77 (127)
391 COG1120 FepC ABC-type cobalami 97.6 5.6E-05 1.2E-09 55.8 3.5 28 5-32 26-53 (258)
392 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 6E-05 1.3E-09 55.2 3.6 27 5-31 25-51 (236)
393 PRK11629 lolD lipoprotein tran 97.6 6E-05 1.3E-09 55.1 3.6 27 5-31 33-59 (233)
394 PRK14974 cell division protein 97.6 5.3E-05 1.2E-09 58.2 3.4 37 6-42 139-179 (336)
395 cd03214 ABC_Iron-Siderophores_ 97.6 6.6E-05 1.4E-09 52.7 3.6 27 5-31 23-49 (180)
396 PRK13540 cytochrome c biogenes 97.6 6.5E-05 1.4E-09 53.6 3.6 27 5-31 25-51 (200)
397 cd03257 ABC_NikE_OppD_transpor 97.6 5.9E-05 1.3E-09 54.8 3.5 27 5-31 29-55 (228)
398 cd03232 ABC_PDR_domain2 The pl 97.6 5.7E-05 1.2E-09 53.6 3.3 25 6-30 32-56 (192)
399 PRK14949 DNA polymerase III su 97.6 5.1E-05 1.1E-09 64.6 3.5 26 9-35 40-65 (944)
400 PRK10247 putative ABC transpor 97.6 6.4E-05 1.4E-09 54.7 3.6 27 5-31 31-57 (225)
401 PF13086 AAA_11: AAA domain; P 97.6 4.9E-05 1.1E-09 54.9 3.0 23 9-31 19-41 (236)
402 TIGR02782 TrbB_P P-type conjug 97.6 6.3E-05 1.4E-09 57.1 3.7 27 6-32 131-157 (299)
403 CHL00095 clpC Clp protease ATP 97.6 0.0014 3.1E-08 56.4 12.2 27 5-31 198-224 (821)
404 cd03247 ABCC_cytochrome_bd The 97.6 6.8E-05 1.5E-09 52.5 3.6 26 6-31 27-52 (178)
405 KOG0727|consensus 97.6 6.4E-05 1.4E-09 55.2 3.5 31 7-38 189-219 (408)
406 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 6.6E-05 1.4E-09 50.8 3.4 27 5-31 24-50 (144)
407 PRK11124 artP arginine transpo 97.6 6.4E-05 1.4E-09 55.2 3.6 27 5-31 26-52 (242)
408 PRK13541 cytochrome c biogenes 97.6 6.6E-05 1.4E-09 53.4 3.6 26 6-31 25-50 (195)
409 cd03265 ABC_DrrA DrrA is the A 97.6 6.6E-05 1.4E-09 54.3 3.6 26 6-31 25-50 (220)
410 cd03246 ABCC_Protease_Secretio 97.6 7.2E-05 1.6E-09 52.2 3.7 26 6-31 27-52 (173)
411 PRK10787 DNA-binding ATP-depen 97.6 8.1E-05 1.8E-09 63.3 4.5 33 5-38 347-379 (784)
412 TIGR01978 sufC FeS assembly AT 97.6 6.5E-05 1.4E-09 55.1 3.5 26 5-30 24-49 (243)
413 TIGR00073 hypB hydrogenase acc 97.6 6.3E-05 1.4E-09 54.0 3.3 28 5-32 20-47 (207)
414 PRK14494 putative molybdopteri 97.6 5.8E-05 1.3E-09 54.9 3.1 26 7-32 1-26 (229)
415 cd03296 ABC_CysA_sulfate_impor 97.6 6.8E-05 1.5E-09 55.0 3.6 27 5-31 26-52 (239)
416 PRK11248 tauB taurine transpor 97.6 6.8E-05 1.5E-09 55.6 3.6 27 5-31 25-51 (255)
417 PRK15177 Vi polysaccharide exp 97.6 6.9E-05 1.5E-09 54.1 3.5 27 5-31 11-37 (213)
418 cd01124 KaiC KaiC is a circadi 97.6 6.5E-05 1.4E-09 52.8 3.3 22 9-30 1-22 (187)
419 PRK14490 putative bifunctional 97.6 5.8E-05 1.3E-09 59.0 3.3 27 6-32 4-30 (369)
420 cd03266 ABC_NatA_sodium_export 97.6 7.1E-05 1.5E-09 54.0 3.6 26 6-31 30-55 (218)
421 PRK13900 type IV secretion sys 97.6 6.5E-05 1.4E-09 57.8 3.5 27 6-32 159-185 (332)
422 PF01695 IstB_IS21: IstB-like 97.6 6.6E-05 1.4E-09 52.7 3.3 40 6-45 46-89 (178)
423 TIGR02639 ClpA ATP-dependent C 97.6 8.2E-05 1.8E-09 63.0 4.4 26 6-31 202-227 (731)
424 PF13479 AAA_24: AAA domain 97.6 6.5E-05 1.4E-09 54.2 3.3 33 6-42 2-34 (213)
425 cd01128 rho_factor Transcripti 97.6 8.4E-05 1.8E-09 54.9 3.9 29 4-32 13-41 (249)
426 TIGR01425 SRP54_euk signal rec 97.6 8.3E-05 1.8E-09 58.8 4.1 37 6-42 99-139 (429)
427 TIGR03771 anch_rpt_ABC anchore 97.6 7.2E-05 1.6E-09 54.3 3.5 27 5-31 4-30 (223)
428 TIGR01420 pilT_fam pilus retra 97.6 7.5E-05 1.6E-09 57.8 3.8 27 6-32 121-147 (343)
429 PRK00440 rfc replication facto 97.6 8E-05 1.7E-09 56.7 3.9 25 7-31 38-62 (319)
430 PRK13764 ATPase; Provisional 97.6 6.5E-05 1.4E-09 61.8 3.6 27 6-32 256-282 (602)
431 cd03218 ABC_YhbG The ABC trans 97.6 7.3E-05 1.6E-09 54.5 3.5 27 5-31 24-50 (232)
432 PRK10584 putative ABC transpor 97.6 7.6E-05 1.6E-09 54.3 3.6 27 5-31 34-60 (228)
433 cd03254 ABCC_Glucan_exporter_l 97.6 7.5E-05 1.6E-09 54.3 3.6 26 6-31 28-53 (229)
434 PRK14247 phosphate ABC transpo 97.6 7.3E-05 1.6E-09 55.2 3.6 27 5-31 27-53 (250)
435 PRK14955 DNA polymerase III su 97.6 6.3E-05 1.4E-09 59.3 3.4 26 9-35 40-65 (397)
436 TIGR03499 FlhF flagellar biosy 97.6 6.8E-05 1.5E-09 56.4 3.4 37 6-42 193-235 (282)
437 PRK14963 DNA polymerase III su 97.6 5.7E-05 1.2E-09 61.2 3.2 25 8-32 37-61 (504)
438 cd03245 ABCC_bacteriocin_expor 97.6 7.8E-05 1.7E-09 53.9 3.6 27 5-31 28-54 (220)
439 PRK14960 DNA polymerase III su 97.6 6.6E-05 1.4E-09 62.1 3.5 28 7-35 37-64 (702)
440 cd03216 ABC_Carb_Monos_I This 97.6 8.1E-05 1.8E-09 51.4 3.5 27 5-31 24-50 (163)
441 PRK14250 phosphate ABC transpo 97.6 7.7E-05 1.7E-09 54.8 3.6 26 6-31 28-53 (241)
442 PF00437 T2SE: Type II/IV secr 97.6 7.1E-05 1.5E-09 55.9 3.4 27 6-32 126-152 (270)
443 TIGR02524 dot_icm_DotB Dot/Icm 97.6 7.9E-05 1.7E-09 57.9 3.8 26 6-31 133-158 (358)
444 TIGR01184 ntrCD nitrate transp 97.6 7.8E-05 1.7E-09 54.4 3.6 27 5-31 9-35 (230)
445 PF08298 AAA_PrkA: PrkA AAA do 97.6 9.7E-05 2.1E-09 56.7 4.1 33 5-37 86-118 (358)
446 PRK10744 pstB phosphate transp 97.6 7.6E-05 1.6E-09 55.5 3.5 27 5-31 37-63 (260)
447 PRK14242 phosphate transporter 97.6 7.6E-05 1.6E-09 55.2 3.5 26 5-30 30-55 (253)
448 cd03234 ABCG_White The White s 97.6 7.2E-05 1.6E-09 54.4 3.3 27 5-31 31-57 (226)
449 cd03268 ABC_BcrA_bacitracin_re 97.6 8.1E-05 1.8E-09 53.4 3.6 26 6-31 25-50 (208)
450 PRK08181 transposase; Validate 97.6 7.2E-05 1.6E-09 55.8 3.3 40 6-45 105-148 (269)
451 PRK14957 DNA polymerase III su 97.6 6.8E-05 1.5E-09 61.1 3.5 24 9-32 40-63 (546)
452 TIGR02770 nickel_nikD nickel i 97.6 7.8E-05 1.7E-09 54.4 3.5 28 5-32 10-37 (230)
453 PRK13539 cytochrome c biogenes 97.6 8.4E-05 1.8E-09 53.3 3.6 27 5-31 26-52 (207)
454 cd03215 ABC_Carb_Monos_II This 97.6 8.2E-05 1.8E-09 52.3 3.4 26 6-31 25-50 (182)
455 PRK10908 cell division protein 97.6 8.5E-05 1.8E-09 53.8 3.6 27 5-31 26-52 (222)
456 PRK05642 DNA replication initi 97.6 0.00012 2.7E-09 53.5 4.5 37 7-44 45-86 (234)
457 cd03237 ABC_RNaseL_inhibitor_d 97.6 8.5E-05 1.8E-09 54.8 3.6 27 5-31 23-49 (246)
458 PRK11264 putative amino-acid A 97.6 8.4E-05 1.8E-09 54.8 3.6 26 6-31 28-53 (250)
459 PRK14267 phosphate ABC transpo 97.5 8.3E-05 1.8E-09 55.0 3.6 27 5-31 28-54 (253)
460 cd04155 Arl3 Arl3 subfamily. 97.5 7.7E-05 1.7E-09 51.6 3.2 25 6-30 13-37 (173)
461 PRK10895 lipopolysaccharide AB 97.5 8.4E-05 1.8E-09 54.5 3.6 27 5-31 27-53 (241)
462 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00013 2.8E-09 45.2 4.0 31 9-40 1-34 (99)
463 TIGR02788 VirB11 P-type DNA tr 97.5 7.7E-05 1.7E-09 56.9 3.4 27 6-32 143-169 (308)
464 TIGR02323 CP_lyasePhnK phospho 97.5 8E-05 1.7E-09 55.1 3.4 27 5-31 27-53 (253)
465 cd04114 Rab30 Rab30 subfamily. 97.5 9.9E-05 2.1E-09 50.8 3.7 30 1-30 1-30 (169)
466 cd03228 ABCC_MRP_Like The MRP 97.5 9.8E-05 2.1E-09 51.4 3.7 27 5-31 26-52 (171)
467 PRK10771 thiQ thiamine transpo 97.5 8.6E-05 1.9E-09 54.2 3.5 27 5-31 23-49 (232)
468 PRK00411 cdc6 cell division co 97.5 0.00011 2.4E-09 57.7 4.4 26 6-31 54-79 (394)
469 cd00879 Sar1 Sar1 subfamily. 97.5 8.9E-05 1.9E-09 52.2 3.5 26 4-29 16-41 (190)
470 TIGR02868 CydC thiol reductant 97.5 7.3E-05 1.6E-09 61.1 3.4 28 5-32 359-386 (529)
471 cd03295 ABC_OpuCA_Osmoprotecti 97.5 9.1E-05 2E-09 54.4 3.6 26 6-31 26-51 (242)
472 PRK14958 DNA polymerase III su 97.5 7.6E-05 1.7E-09 60.6 3.4 27 8-35 39-65 (509)
473 cd03251 ABCC_MsbA MsbA is an e 97.5 9.2E-05 2E-09 54.1 3.6 27 5-31 26-52 (234)
474 TIGR00972 3a0107s01c2 phosphat 97.5 9.1E-05 2E-09 54.6 3.6 27 5-31 25-51 (247)
475 cd03252 ABCC_Hemolysin The ABC 97.5 9.1E-05 2E-09 54.2 3.6 27 5-31 26-52 (237)
476 TIGR02928 orc1/cdc6 family rep 97.5 8.6E-05 1.9E-09 57.7 3.6 26 6-31 39-64 (365)
477 PF02492 cobW: CobW/HypB/UreG, 97.5 8.3E-05 1.8E-09 52.1 3.2 22 8-29 1-22 (178)
478 PRK13894 conjugal transfer ATP 97.5 8.7E-05 1.9E-09 56.8 3.6 25 6-30 147-171 (319)
479 TIGR01189 ccmA heme ABC export 97.5 9.6E-05 2.1E-09 52.6 3.6 27 5-31 24-50 (198)
480 cd03298 ABC_ThiQ_thiamine_tran 97.5 9.5E-05 2.1E-09 53.1 3.6 27 5-31 22-48 (211)
481 PHA02624 large T antigen; Prov 97.5 0.00014 3E-09 59.5 4.8 34 5-39 429-462 (647)
482 TIGR02237 recomb_radB DNA repa 97.5 0.0001 2.2E-09 52.9 3.7 37 5-41 10-50 (209)
483 TIGR02639 ClpA ATP-dependent C 97.5 0.00011 2.5E-09 62.2 4.5 34 9-43 486-521 (731)
484 COG4608 AppF ABC-type oligopep 97.5 8.5E-05 1.9E-09 54.8 3.3 27 5-31 37-63 (268)
485 TIGR03005 ectoine_ehuA ectoine 97.5 9.3E-05 2E-09 54.7 3.5 27 5-31 24-50 (252)
486 cd03250 ABCC_MRP_domain1 Domai 97.5 0.0001 2.2E-09 52.8 3.6 27 5-31 29-55 (204)
487 PRK11247 ssuB aliphatic sulfon 97.5 9.4E-05 2E-09 54.9 3.6 26 6-31 37-62 (257)
488 PRK14269 phosphate ABC transpo 97.5 9.6E-05 2.1E-09 54.5 3.6 26 6-31 27-52 (246)
489 KOG2028|consensus 97.5 8.9E-05 1.9E-09 57.1 3.4 34 5-38 160-195 (554)
490 PRK09493 glnQ glutamine ABC tr 97.5 9.5E-05 2.1E-09 54.2 3.6 27 5-31 25-51 (240)
491 PRK08939 primosomal protein Dn 97.5 0.00014 3.1E-09 55.4 4.5 40 6-45 155-198 (306)
492 PRK11701 phnK phosphonate C-P 97.5 9E-05 2E-09 55.0 3.5 27 5-31 30-56 (258)
493 PRK14262 phosphate ABC transpo 97.5 9.5E-05 2.1E-09 54.6 3.6 27 5-31 27-53 (250)
494 cd03233 ABC_PDR_domain1 The pl 97.5 8.4E-05 1.8E-09 53.2 3.2 27 5-31 31-57 (202)
495 PRK14241 phosphate transporter 97.5 9.3E-05 2E-09 54.9 3.5 26 6-31 29-54 (258)
496 PRK14722 flhF flagellar biosyn 97.5 9.4E-05 2E-09 57.6 3.6 37 6-42 136-178 (374)
497 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 9.8E-05 2.1E-09 53.7 3.5 27 5-31 46-72 (224)
498 PRK14256 phosphate ABC transpo 97.5 9.9E-05 2.1E-09 54.6 3.6 27 5-31 28-54 (252)
499 PRK14964 DNA polymerase III su 97.5 8E-05 1.7E-09 60.0 3.3 25 8-32 36-60 (491)
500 cd03236 ABC_RNaseL_inhibitor_d 97.5 0.0001 2.2E-09 54.7 3.7 27 5-31 24-50 (255)
No 1
>KOG3347|consensus
Probab=100.00 E-value=9.4e-36 Score=196.00 Aligned_cols=169 Identities=52% Similarity=0.978 Sum_probs=162.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCcEEe
Q psy6661 3 SKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKIID 82 (172)
Q Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~ 82 (172)
+.+..+.|+|||.||+||||++..||+.++ +++|..++++++..++..+++++.+.++|++.+++.+++.+..||.|+|
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~-~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IVD 81 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTG-LEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIVD 81 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhC-CceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCcEEe
Confidence 346689999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHH
Q psy6661 83 YHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVT 162 (172)
Q Consensus 83 ~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~ 162 (172)
+|...+|+..|+|++|.|.||..++..||..|+++..++.++...+++..+++++...|.+.++....+.+.+++.+.+.
T Consensus 82 yHgCd~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~s~~~Eem~~ni~ 161 (176)
T KOG3347|consen 82 YHGCDFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQSETKEEMESNIS 161 (176)
T ss_pred ecccCccchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHhcC
Q psy6661 163 SIIQFVKQWK 172 (172)
Q Consensus 163 ~i~~~~~~~~ 172 (172)
+++.|.+.|+
T Consensus 162 ri~~w~~~w~ 171 (176)
T KOG3347|consen 162 RILNWTRMWK 171 (176)
T ss_pred HHHHHHHHHh
Confidence 9999999996
No 2
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.97 E-value=5e-30 Score=173.62 Aligned_cols=156 Identities=35% Similarity=0.554 Sum_probs=144.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCcEEeecccc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKIIDYHSAE 87 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 87 (172)
++|+|||.||+||||+|+.|+ .+| +.+++..+++.+.+++..+++.++...+|.+.+...++..+..++.|+++|.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg-~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~h 78 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELG-YKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSH 78 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhC-CceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhh
Confidence 479999999999999999999 789 999999999999999999889888888888999999998887789999999999
Q ss_pred cCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 88 MFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 88 ~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
+++ .+|++|.|.|+|+++.+||..|+++..++.++.+.+.+.-.+.++...+.+.+.+++++.+++++.+.+.+++.+
T Consensus 79 l~~--~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 79 LLP--DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred cCC--CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence 998 479999999999999999999999999999999999999999999999988899999999999997777777765
No 3
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.90 E-value=1.9e-23 Score=142.96 Aligned_cols=154 Identities=25% Similarity=0.392 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHH----HHHhc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELE----PRVQG 76 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 76 (172)
++.|+|.|++||||||+++.||+.|+ ++|+|.|.++... .+|...|+...+.. +..++..+. .+++.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~-~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~--E~~vl~~l~~~~~~ViaT 78 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALN-LPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRL--ETEVLKELLEEDNAVIAT 78 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcC-CCcccchHHHHHHHCcCHHHHHHHHhHHHHHHH--HHHHHHHHhhcCCeEEEC
Confidence 46799999999999999999999999 9999999998876 46666666655443 333333322 12233
Q ss_pred C-CcEEeecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCCCC
Q psy6661 77 G-GKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSNT 153 (172)
Q Consensus 77 ~-~~ii~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~ 153 (172)
| |.++.......+... +.+|||++|++++.+|+.... ++|........+.+..+++++.+.|. +++++++++.+
T Consensus 79 GGG~v~~~enr~~l~~~--g~vv~L~~~~e~l~~Rl~~~~-~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~~~~~ 155 (172)
T COG0703 79 GGGAVLSEENRNLLKKR--GIVVYLDAPFETLYERLQRDR-KRPLLQTEDPREELEELLEERQPLYREVADFIIDTDDRS 155 (172)
T ss_pred CCccccCHHHHHHHHhC--CeEEEEeCCHHHHHHHhcccc-CCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecCCCCc
Confidence 3 334433333444322 588999999999999999433 45555554444668899999999998 45777766655
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy6661 154 HDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 154 ~~e~~~~i~~i~~~~~~ 170 (172)
+++ +.+|++.+..
T Consensus 156 -~~v---~~~i~~~l~~ 168 (172)
T COG0703 156 -EEV---VEEILEALEG 168 (172)
T ss_pred -HHH---HHHHHHHHHH
Confidence 666 7777777654
No 4
>PRK03839 putative kinase; Provisional
Probab=99.87 E-value=8.4e-21 Score=133.50 Aligned_cols=150 Identities=29% Similarity=0.438 Sum_probs=92.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCcEEeeccccc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKIIDYHSAEM 88 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 88 (172)
+|+|+|+|||||||+++.|+++++ ++++++|++++...+........ ... ...+...+.......++|++++...+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~-~~~id~d~~~~~~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~vIidG~~~~l 77 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG-YEYVDLTEFALKKGIGEEKDDEM-EID--FDKLAYFIEEEFKEKNVVLDGHLSHL 77 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEehhhhhhhcCCcccCChhh-hcC--HHHHHHHHHHhccCCCEEEEeccccc
Confidence 699999999999999999999999 99999999987653222111111 111 12232333322233468888865544
Q ss_pred CCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHH-HHHhhccCCcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 89 FPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILE-EARDSYKEDIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 89 ~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
.. ++.+|||+++++++.+|+..|+..++........+ +...+. +....-...+.+|+++.+++++ +.+|.+.
T Consensus 78 ~~---~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~Id~~~~s~eev---~~~I~~~ 150 (180)
T PRK03839 78 LP---VDYVIVLRAHPKIIKERLKERGYSKKKILENVEAE-LVDVCLCEALEEKEKVIEVDTTGKTPEEV---VEEILEL 150 (180)
T ss_pred cC---CCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHhcCCEEEEECCCCCHHHH---HHHHHHH
Confidence 33 68899999999999999998874433332211111 211111 1111111336777777899999 5555554
Q ss_pred HH
Q psy6661 168 VK 169 (172)
Q Consensus 168 ~~ 169 (172)
+.
T Consensus 151 l~ 152 (180)
T PRK03839 151 IK 152 (180)
T ss_pred Hh
Confidence 43
No 5
>PRK13949 shikimate kinase; Provisional
Probab=99.86 E-value=1.2e-21 Score=136.19 Aligned_cols=149 Identities=18% Similarity=0.270 Sum_probs=96.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHHHHhcCCcEE
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEPRVQGGGKII 81 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 81 (172)
..|+|.|+|||||||+++.|++.++ +++++.|.++... .++...++...+.. +..++..+ ....+.|+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~-~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~--e~~~l~~l---~~~~~~vi 75 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG-LSFIDLDFFIENRFHKTVGDIFAERGEAVFREL--ERNMLHEV---AEFEDVVI 75 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-CCeecccHHHHHHHCccHHHHHHHhCHHHHHHH--HHHHHHHH---HhCCCEEE
Confidence 5799999999999999999999999 9999999887643 11222222211111 12222222 12233333
Q ss_pred -eecc-------cccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhc---hHHHHHHHHHHHhhcc-CCcEEeC
Q psy6661 82 -DYHS-------AEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQ---CEIFQTILEEARDSYK-EDIVVSL 149 (172)
Q Consensus 82 -~~~~-------~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~i~~ 149 (172)
.+.. ..++.. .+.+|||++|++++.+|+..+...++....... .+.+..+|.++.+.|. +++++++
T Consensus 76 s~Ggg~~~~~~~~~~l~~--~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~ 153 (169)
T PRK13949 76 STGGGAPCFFDNMELMNA--SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNA 153 (169)
T ss_pred EcCCcccCCHHHHHHHHh--CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEEC
Confidence 3221 122222 478999999999999999864433444322111 2246677888888886 4689999
Q ss_pred CCCChhhHHHHHHHHHHH
Q psy6661 150 PSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 150 ~~~~~~e~~~~i~~i~~~ 167 (172)
++.+++++ +++|++.
T Consensus 154 ~~~~~~e~---~~~I~~~ 168 (169)
T PRK13949 154 DKLEDESQ---IEQLVQR 168 (169)
T ss_pred CCCCHHHH---HHHHHHh
Confidence 99999888 7777654
No 6
>PRK13948 shikimate kinase; Provisional
Probab=99.86 E-value=4.3e-21 Score=134.52 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=100.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHHHHhcC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEPRVQGG 77 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
+.....|+|+|++||||||+++.|++++| ++++|.|.++.+. .+|...++...+.. +..++.. ....+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg-~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~--E~~~l~~---l~~~~ 80 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM-LHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRC--EAEVVRR---LTRLD 80 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHH--HHHHHHH---HHhcC
Confidence 44568899999999999999999999999 9999999987764 23333333322221 1222222 22223
Q ss_pred CcEEe--------ecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-CCcEEe
Q psy6661 78 GKIID--------YHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK-EDIVVS 148 (172)
Q Consensus 78 ~~ii~--------~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~ 148 (172)
+.|+. ......+.. .+.+|||+++++++.+|+..+ +++........+.+..++.++.+.|. ++.+|+
T Consensus 81 ~~VIa~GgG~v~~~~n~~~l~~--~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~ 156 (182)
T PRK13948 81 YAVISLGGGTFMHEENRRKLLS--RGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNEREPVYRQATIHVS 156 (182)
T ss_pred CeEEECCCcEEcCHHHHHHHHc--CCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEE
Confidence 33332 222222322 267899999999999999543 23433322223457788888888886 568999
Q ss_pred CCCCChhhHHHHHHHHHHHHHh
Q psy6661 149 LPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 149 ~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
+++.+++++ +++|++.+..
T Consensus 157 t~~~~~~ei---~~~i~~~l~~ 175 (182)
T PRK13948 157 TDGRRSEEV---VEEIVEKLWA 175 (182)
T ss_pred CCCCCHHHH---HHHHHHHHHH
Confidence 999999999 6666655543
No 7
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.85 E-value=8.1e-21 Score=132.54 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=99.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccccCCCCcchhHHHHHHHHHHhcC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQYECPELDEDKLLDELEPRVQGG 77 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
|++...|+|.|++||||||+++.|+++++ +++++.|..+.... .+...++...+.. +..++..+. ..+
T Consensus 1 ~~~~~~I~liG~~GaGKStl~~~La~~l~-~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~--e~~~l~~l~---~~~ 74 (172)
T PRK05057 1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDR--EEKVINELT---EKQ 74 (172)
T ss_pred CCCCCEEEEECCCCcCHHHHHHHHHHHcC-CcEEECCchHHHHhCcCHhHHHHHhCHHHHHHH--HHHHHHHHH---hCC
Confidence 34566899999999999999999999999 99999998655431 1111222211111 222333322 223
Q ss_pred CcEEee--------cccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEE
Q psy6661 78 GKIIDY--------HSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVV 147 (172)
Q Consensus 78 ~~ii~~--------~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i 147 (172)
++++.. ....++.. .+.+|||++|++++.+|+..+. .++........+.+..++.++.+.|. ++++|
T Consensus 75 ~~vi~~ggg~v~~~~~~~~l~~--~~~vv~L~~~~e~~~~Ri~~~~-~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~i 151 (172)
T PRK05057 75 GIVLATGGGSVKSRETRNRLSA--RGVVVYLETTIEKQLARTQRDK-KRPLLQVDDPREVLEALANERNPLYEEIADVTI 151 (172)
T ss_pred CEEEEcCCchhCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEE
Confidence 333322 11122222 3689999999999999998654 33444332223457788888888886 57999
Q ss_pred eCCCCChhhHHHHHHHHHHHHH
Q psy6661 148 SLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 148 ~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
++++.+++++ ++.|++++.
T Consensus 152 dt~~~s~~ei---~~~i~~~l~ 170 (172)
T PRK05057 152 RTDDQSAKVV---ANQIIHMLE 170 (172)
T ss_pred ECCCCCHHHH---HHHHHHHHh
Confidence 9999999999 666776664
No 8
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.84 E-value=1.4e-19 Score=126.34 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=93.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---c---ccccccccCCCCcchhHHHHHHHHHHhcC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---F---YLKYDEQYECPELDEDKLLDELEPRVQGG 77 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
|.++..|+|+|+|||||||+|+.|++++| +++++.|.+..... . +...++.. + .......+.......
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~-~~~~d~d~~~~~~~g~~~~~~~~~~g~~~---~--~~~~~~~~~~l~~~~ 74 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLG-YDFIDTDHLIEARAGKSIPEIFEEEGEAA---F--RELEEEVLAELLARH 74 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEChHHHHHHcCCCHHHHHHHHCHHH---H--HHHHHHHHHHHHhcC
Confidence 45677999999999999999999999999 99999998876431 0 00001000 0 011112222333333
Q ss_pred CcEEeecccccCCc------CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeC
Q psy6661 78 GKIIDYHSAEMFPE------RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSL 149 (172)
Q Consensus 78 ~~ii~~~~~~~~~~------~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 149 (172)
+.|+.......... .....+|||++|++++.+|+..|.. ++........+.+...+.+....|. .+.++++
T Consensus 75 ~~vi~~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt 153 (175)
T PRK00131 75 NLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRDLYEERDPLYEEVADITVET 153 (175)
T ss_pred CCEEEeCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeC
Confidence 33333211111110 0135789999999999999988763 2222211222335555666555443 4689999
Q ss_pred CCCChhhHHHHHHHHHHHHH
Q psy6661 150 PSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 150 ~~~~~~e~~~~i~~i~~~~~ 169 (172)
++.+++++ ++.|++.++
T Consensus 154 ~~~~~~e~---~~~I~~~v~ 170 (175)
T PRK00131 154 DGRSPEEV---VNEILEKLE 170 (175)
T ss_pred CCCCHHHH---HHHHHHHHH
Confidence 99999999 555555554
No 9
>PRK13947 shikimate kinase; Provisional
Probab=99.83 E-value=2.2e-20 Score=130.27 Aligned_cols=148 Identities=23% Similarity=0.264 Sum_probs=90.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHHHHhcCCcE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEPRVQGGGKI 80 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (172)
|+.|+|.|+|||||||+++.|++++| +++++.|.++... .++...++...... +..+++.+ ...++.|
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg-~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~--e~~~~~~l---~~~~~~v 74 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLS-FGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSE--EKLLVKKL---ARLKNLV 74 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC-CCEEECchhhhhhcCCcHHHHHHHhChHHHHHH--HHHHHHHH---hhcCCeE
Confidence 35799999999999999999999999 9999999987654 11111122111100 11222222 2222333
Q ss_pred E--------eecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-CCcEEeCCC
Q psy6661 81 I--------DYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK-EDIVVSLPS 151 (172)
Q Consensus 81 i--------~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 151 (172)
+ +......+.. .+.+|||+++++++.+|+..|.. ++........+.+...+.++.+.|. .+.+|++++
T Consensus 75 i~~g~g~vl~~~~~~~l~~--~~~vv~L~~~~~~l~~Rl~~r~~-rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~ 151 (171)
T PRK13947 75 IATGGGVVLNPENVVQLRK--NGVVICLKARPEVILRRVGKKKS-RPLLMVGDPEERIKELLKEREPFYDFADYTIDTGD 151 (171)
T ss_pred EECCCCCcCCHHHHHHHHh--CCEEEEEECCHHHHHHHhcCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCC
Confidence 3 2222222221 25689999999999999987752 2222222222335555666666664 479999999
Q ss_pred CChhhHHHHHHHHHH
Q psy6661 152 NTHDDMSSNVTSIIQ 166 (172)
Q Consensus 152 ~~~~e~~~~i~~i~~ 166 (172)
.+++++ ++.|.+
T Consensus 152 ~~~~~i---~~~I~~ 163 (171)
T PRK13947 152 MTIDEV---AEEIIK 163 (171)
T ss_pred CCHHHH---HHHHHH
Confidence 999999 555555
No 10
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.83 E-value=1.9e-19 Score=120.78 Aligned_cols=151 Identities=21% Similarity=0.329 Sum_probs=96.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc----cc----ccccccccCCCCcchhHHHHHH-HHHHhcCCc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN----QF----YLKYDEQYECPELDEDKLLDEL-EPRVQGGGK 79 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (172)
+|.|.|+|||||||+++.|++++| +++++.+.+.++. ++ |..+.++ .+ +.+..++.. ......+++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~--~p--~iD~~iD~rq~e~a~~~nv 76 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-LKLVSAGTIFREMARERGMSLEEFSRYAEE--DP--EIDKEIDRRQKELAKEGNV 76 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-CceeeccHHHHHHHHHcCCCHHHHHHHHhc--Cc--hhhHHHHHHHHHHHHcCCe
Confidence 689999999999999999999999 9999988887654 21 1111111 11 122333332 234447899
Q ss_pred EEeecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhc----hH-----HHHHHHHHHHhhcc-CCcEEeC
Q psy6661 80 IIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQ----CE-----IFQTILEEARDSYK-EDIVVSL 149 (172)
Q Consensus 80 ii~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~-~~~~i~~ 149 (172)
|++++.+.++-...+++.|||.+|.+++.+|+..|.. ..+.+... .+ .+..+|.-....+. -+++++|
T Consensus 77 VlegrLA~Wi~k~~adlkI~L~Apl~vRa~Ria~REg--i~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinT 154 (179)
T COG1102 77 VLEGRLAGWIVREYADLKIWLKAPLEVRAERIAKREG--IDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINT 154 (179)
T ss_pred EEhhhhHHHHhccccceEEEEeCcHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEec
Confidence 9999988777666679999999999999999999962 11111110 11 11111111111000 1588888
Q ss_pred CCCChhhHHHHHHHHHH
Q psy6661 150 PSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 150 ~~~~~~e~~~~i~~i~~ 166 (172)
+..+++++...+..-+.
T Consensus 155 s~~~~~~v~~il~~aid 171 (179)
T COG1102 155 SKWDPEEVFLILLDAID 171 (179)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 89999888555544433
No 11
>PRK13946 shikimate kinase; Provisional
Probab=99.82 E-value=6.4e-19 Score=124.34 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=96.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccccCCCCcchhHHHHHHHHHHhcCCc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQYECPELDEDKLLDELEPRVQGGGK 79 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
..+.|+|+|++||||||+++.|++++| +++++.|..+.... ++..+++.+.. ..-...+......+..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg-~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~-----~~e~~~l~~l~~~~~~ 82 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG-LPFLDADTEIERAARMTIAEIFAAYGEPEFR-----DLERRVIARLLKGGPL 82 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-CCeECcCHHHHHHhCCCHHHHHHHHCHHHHH-----HHHHHHHHHHHhcCCe
Confidence 356899999999999999999999999 99999998765431 11111221110 0011222333334444
Q ss_pred EEeeccc-ccCCc-----CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-CCcEEeCCCC
Q psy6661 80 IIDYHSA-EMFPE-----RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK-EDIVVSLPSN 152 (172)
Q Consensus 80 ii~~~~~-~~~~~-----~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~ 152 (172)
|+..... .+.+. ...+.+|||++|++++.+|+..|.. ++........+.+..++..+.+.|. .++++++++.
T Consensus 83 Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~-rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~~~~ 161 (184)
T PRK13946 83 VLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDT-RPLLRTADPKETLARLMEERYPVYAEADLTVASRDV 161 (184)
T ss_pred EEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCC
Confidence 5543221 12211 1236789999999999999998752 2212111112345566666666664 4688888899
Q ss_pred ChhhHHHHHHHHHHHHHhc
Q psy6661 153 THDDMSSNVTSIIQFVKQW 171 (172)
Q Consensus 153 ~~~e~~~~i~~i~~~~~~~ 171 (172)
+++++ ++.|++++++|
T Consensus 162 ~~~~~---~~~i~~~i~~~ 177 (184)
T PRK13946 162 PKEVM---ADEVIEALAAY 177 (184)
T ss_pred CHHHH---HHHHHHHHHHh
Confidence 99999 77777776654
No 12
>PRK04182 cytidylate kinase; Provisional
Probab=99.81 E-value=1e-18 Score=122.65 Aligned_cols=157 Identities=15% Similarity=0.222 Sum_probs=90.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc----ccc-cccccccCCCCcch-hHHHHHHHHHH-hcCCcEE
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN----QFY-LKYDEQYECPELDE-DKLLDELEPRV-QGGGKII 81 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~----~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~ii 81 (172)
+|+|+|++||||||+++.|++++| +++++.+++.+.. +.. ..... .....+.. ..+...+.... ..+++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg-~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 79 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG-LKHVSAGEIFRELAKERGMSLEEFNK-YAEEDPEIDKEIDRRQLEIAEKEDNVVL 79 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CcEecHHHHHHHHHHHcCCCHHHHHH-HhhcCchHHHHHHHHHHHHHhcCCCEEE
Confidence 799999999999999999999999 9999988776542 110 00000 00111101 11222223333 3467888
Q ss_pred eecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCC-chhhhhhch------HHHHHHHHHHHhhcc-CCcEEeCCCCC
Q psy6661 82 DYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSG-KKLQDNLQC------EIFQTILEEARDSYK-EDIVVSLPSNT 153 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~i~~~~~~ 153 (172)
++.....+....++.+|||+||++++.+|+..|.... ......... ..+..++......+. .+.++++++.+
T Consensus 80 ~g~~~~~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~ 159 (180)
T PRK04182 80 EGRLAGWMAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWD 159 (180)
T ss_pred EEeecceEecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCC
Confidence 8754433332336789999999999999999886211 111110000 011111111111112 46899999999
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy6661 154 HDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 154 ~~e~~~~i~~i~~~~~~ 170 (172)
++++ ++.|++.+..
T Consensus 160 ~~~~---~~~I~~~~~~ 173 (180)
T PRK04182 160 PEGV---FDIILTAIDK 173 (180)
T ss_pred HHHH---HHHHHHHHHH
Confidence 9999 5555555544
No 13
>PLN02199 shikimate kinase
Probab=99.81 E-value=2.1e-19 Score=132.90 Aligned_cols=155 Identities=19% Similarity=0.279 Sum_probs=100.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-------ccccccccccCCCCcchhHHHHHHHH----HH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-------QFYLKYDEQYECPELDEDKLLDELEP----RV 74 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 74 (172)
+...|+|+|++||||||+++.|++.+| +++++.|.++... .+|..+|+...+.. +..++..+.. ++
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg-~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~--E~e~L~~L~~~~~~VI 177 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLG-YTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGK--ETDALKKLSSRYQVVV 177 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-CCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHH--HHHHHHHHHhcCCEEE
Confidence 356899999999999999999999999 9999999998773 13333444332222 2233333321 11
Q ss_pred hcC-CcEEeecccccCCcCCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhh-hc-----hHHHHHHHHHHHhhcc-CCc
Q psy6661 75 QGG-GKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDN-LQ-----CEIFQTILEEARDSYK-EDI 145 (172)
Q Consensus 75 ~~~-~~ii~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~-~~~ 145 (172)
+.| |.++......++. .+.+|||++|++++.+|+...+ .+++..... .+ .+.+..++.++.+.|. ++.
T Consensus 178 StGGG~V~~~~n~~~L~---~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~ 254 (303)
T PLN02199 178 STGGGAVIRPINWKYMH---KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANA 254 (303)
T ss_pred ECCCcccCCHHHHHHHh---CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCE
Confidence 222 2222222222232 2689999999999999998632 223333211 11 2457888999999997 567
Q ss_pred EEe------------CCCCChhhHHHHHHHHHHHHH
Q psy6661 146 VVS------------LPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 146 ~i~------------~~~~~~~e~~~~i~~i~~~~~ 169 (172)
.|+ +++.+++++ +.+|++.+.
T Consensus 255 ~V~~~~~~~~~~~~~td~~s~~ei---~~eIl~~l~ 287 (303)
T PLN02199 255 RVSLENIAAKRGYKNVSDLTPTEI---AIEAFEQVL 287 (303)
T ss_pred EEecccccccccccccCCCCHHHH---HHHHHHHHH
Confidence 787 778999998 556665554
No 14
>PRK00625 shikimate kinase; Provisional
Probab=99.78 E-value=1.3e-18 Score=121.24 Aligned_cols=144 Identities=24% Similarity=0.332 Sum_probs=87.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-c---------cccccccccCCCCcchhHHHHHHHHHHhcCC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-Q---------FYLKYDEQYECPELDEDKLLDELEPRVQGGG 78 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
.|+|+|+|||||||+++.|+++++ +++++.|+++.+. + +|...++...+.. +...+..+ ...+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~-~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~--E~~~l~~l----~~~~ 74 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS-LPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCRE--EFLALTSL----PVIP 74 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHH--HHHHHHHh----ccCC
Confidence 599999999999999999999999 9999999998763 1 1111111111100 11122221 1122
Q ss_pred cEE--------eecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEe
Q psy6661 79 KII--------DYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVS 148 (172)
Q Consensus 79 ~ii--------~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~ 148 (172)
.|+ +......+.. .+.+|||++|++++.+|+..|+..... . ..+.+..++.++.+.|. +++.++
T Consensus 75 ~VIs~GGg~~~~~e~~~~l~~--~~~Vv~L~~~~e~l~~Rl~~R~~~~~~--~--~~~~~~~ll~~R~~~Y~~~ad~~i~ 148 (173)
T PRK00625 75 SIVALGGGTLMIEPSYAHIRN--RGLLVLLSLPIATIYQRLQKRGLPERL--K--HAPSLEEILSQRIDRMRSIADYIFS 148 (173)
T ss_pred eEEECCCCccCCHHHHHHHhc--CCEEEEEECCHHHHHHHHhcCCCCccc--C--cHHHHHHHHHHHHHHHHHHCCEEEe
Confidence 222 2222222322 267899999999999999988643211 1 12336677888888885 456665
Q ss_pred CC------CCChhhHHHHHHHHHHHH
Q psy6661 149 LP------SNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 149 ~~------~~~~~e~~~~i~~i~~~~ 168 (172)
++ +.++.++ .+.++..+
T Consensus 149 ~~~~~~~~~~~~~~~---~~~~~~~~ 171 (173)
T PRK00625 149 LDHVAETSSESLMRA---CQSFCTLL 171 (173)
T ss_pred CCCcccCCCCCHHHH---HHHHHHHh
Confidence 44 4555455 56655544
No 15
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.77 E-value=1.5e-18 Score=140.11 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=105.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHH----HH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEP----RV 74 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 74 (172)
.+.+.|+|.|+|||||||+++.|+++++ ++++|.|.++.+. .+|...++...+.. +..++..+.. ++
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~-~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~--E~~~l~~~~~~~~~VI 80 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMR-LPFADADVEIEREIGMSIPSYFEEYGEPAFREV--EADVVADMLEDFDGIF 80 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhC-CCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCeEE
Confidence 4568899999999999999999999999 9999999998765 45655666554433 3333433321 12
Q ss_pred hcC-CcEEeecccccCCc--CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeC
Q psy6661 75 QGG-GKIIDYHSAEMFPE--RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSL 149 (172)
Q Consensus 75 ~~~-~~ii~~~~~~~~~~--~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 149 (172)
+.| |++........+.. +..+.+|||+++++++.+|+..+. .++.... ...+.+..+|.++.+.|. +++.+++
T Consensus 81 s~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~-~RPll~~-~~~~~~~~l~~~R~~~Y~~~Ad~~i~~ 158 (542)
T PRK14021 81 SLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGG-GRPMLNG-DANKRWKKLFKQRDPVFRQVANVHVHT 158 (542)
T ss_pred ECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCC-CCCCCCC-CcHHHHHHHHHHHHHHHHhhCCEEEEC
Confidence 222 22222222222110 112578999999999999997543 3343322 223457888999999997 4789999
Q ss_pred CCCChhhHHHHHHHHHHHHH
Q psy6661 150 PSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 150 ~~~~~~e~~~~i~~i~~~~~ 169 (172)
++.+++++ +++|++.+.
T Consensus 159 ~~~~~~~~---~~~i~~~~~ 175 (542)
T PRK14021 159 RGLTPQAA---AKKLIDMVA 175 (542)
T ss_pred CCCCHHHH---HHHHHHHHH
Confidence 99999999 555555543
No 16
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.76 E-value=3.5e-17 Score=114.16 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=89.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccccCCCCcchhHHHHHHHHHHhcCCcEE
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQYECPELDEDKLLDELEPRVQGGGKII 81 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 81 (172)
..|+|+|++||||||+++.|++++| +++++.|.+..... ++...+....+.. +..++.. +..++.|+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg-~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~--e~~~~~~----~~~~~~vi 75 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG-YRFVDTDQWLQSTSNMTVAEIVEREGWAGFRAR--ESAALEA----VTAPSTVI 75 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHH--HHHHHHH----hcCCCeEE
Confidence 5799999999999999999999999 99999999876531 1111111110000 1122222 22333344
Q ss_pred eecccccCCc------CCcCEEEEEeCChHHHHHHHHhcCCC--CchhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCC
Q psy6661 82 DYHSAEMFPE------RWIDQVYVLSADNTTLYDRLVEKGQS--GKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPS 151 (172)
Q Consensus 82 ~~~~~~~~~~------~~~~~~i~l~~~~~~~~~Rl~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~ 151 (172)
.......+.. ...+.+|||++|++++.+|+..|... ++........+.....+.++.+.|. ...+||.+
T Consensus 76 ~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~~- 154 (171)
T PRK03731 76 ATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDAT- 154 (171)
T ss_pred ECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcCC-
Confidence 3221111111 12468999999999999999876421 1212111111335556666666665 34666654
Q ss_pred CChhhHHHHHHHHHHHHHh
Q psy6661 152 NTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 152 ~~~~e~~~~i~~i~~~~~~ 170 (172)
.+++++ +.++++.+++
T Consensus 155 ~~~e~v---~~~i~~~l~~ 170 (171)
T PRK03731 155 QPPSQV---VSEILSALAQ 170 (171)
T ss_pred CCHHHH---HHHHHHHHhc
Confidence 688888 6666666543
No 17
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.76 E-value=6.3e-17 Score=112.67 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=90.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-cccccccc-----cCCCCcchhHHHHHHHHHH-hcCCcEE
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDEQ-----YECPELDEDKLLDELEPRV-QGGGKII 81 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~ii 81 (172)
+|+|+|++||||||+|+.|++++| +++++.+++.+... ........ ...... ...+...+.... ..+++|+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~Vi 79 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS-LKLISAGDIFRELAAKMGLDLIEFLNYAEENPEI-DKKIDRRIHEIALKEKNVVL 79 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHH-HHHHHHHHHHHHhcCCCEEE
Confidence 699999999999999999999999 99999988765531 00000000 000000 122223333333 3457888
Q ss_pred eecccccCCcCCcCEEEEEeCChHHHHHHHHhcCC-CCchhhhhhchHHHHHHHHHHH-hhccC--------CcEEeCCC
Q psy6661 82 DYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQ-SGKKLQDNLQCEIFQTILEEAR-DSYKE--------DIVVSLPS 151 (172)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~i~~~~ 151 (172)
++....+.....++++|||+||++++.+|+..|.. +.......... ......... ..|.. +.+++++.
T Consensus 80 ~g~~~~~~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~--~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~ 157 (171)
T TIGR02173 80 ESRLAGWIVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIE--REESEKRRYLKFYGIDIDDLSIYDLVINTSN 157 (171)
T ss_pred EecccceeecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHH--HHHHHHHHHHHHhCCCccccccccEEEECCC
Confidence 88655443344568899999999999999999863 22221111110 000111111 11221 58899999
Q ss_pred CChhhHHHHHHHHH
Q psy6661 152 NTHDDMSSNVTSII 165 (172)
Q Consensus 152 ~~~~e~~~~i~~i~ 165 (172)
.++++ .+.|...+
T Consensus 158 ~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 158 WDPNN-VDIILDAL 170 (171)
T ss_pred CCHHH-HHHHHHHh
Confidence 99988 77776543
No 18
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.76 E-value=8.8e-18 Score=115.10 Aligned_cols=142 Identities=21% Similarity=0.283 Sum_probs=87.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHH----HHHHHHhcCCcEEeec
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLD----ELEPRVQGGGKIIDYH 84 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ii~~~ 84 (172)
.|+|+|+|||||||+++.|++.++ +++++.|.+..... .....++.... .+..+.. .+......+++|+...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~-~~~~~~d~~~~~~~--~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~vi~~g 76 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG-LPFVDLDELIEQRA--GMSIPEIFAEE-GEEGFRELEREVLLLLLTKENAVIATG 76 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC-CCEEEchHHHHHHc--CCCHHHHHHHH-CHHHHHHHHHHHHHHHhccCCcEEECC
Confidence 489999999999999999999999 99999998876531 00000000000 0111111 2222333345555432
Q ss_pred ccccCCc------CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCCCChhh
Q psy6661 85 SAEMFPE------RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSNTHDD 156 (172)
Q Consensus 85 ~~~~~~~------~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~e 156 (172)
....... .....+|||++|++++.+|+..|. .++..... ..+.+...+.++.+.|. ++.++++++.++++
T Consensus 77 ~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~-~~~~~~~~~~~r~~~Y~~~ad~~i~~~~~~~~~ 154 (154)
T cd00464 77 GGAVLREENRRLLLENGIVVWLDASPEELLERLARDK-TRPLLQDE-DPERLRELLEEREPLYREVADLTIDTDELSPEE 154 (154)
T ss_pred CCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCC-CCCCCCCC-CHHHHHHHHHHHHHHHHHhCcEEEECCCCCCCC
Confidence 2112221 124678999999999999999886 33333322 22346667777777775 57899999888753
No 19
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.76 E-value=2.8e-17 Score=117.28 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=90.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccCC------------CCcchhHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYEC------------PELDEDKL 66 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~~------------~~~~~~~~ 66 (172)
.+|+|+|++||||||+++.|++ +| +++++.|.+.++. .+...+++.... .+|.....
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g-~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG-FLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC-CeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 5799999999999999999987 79 9999999876543 111222222211 12211112
Q ss_pred HHHH------------HHHH----hcCCcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhhc
Q psy6661 67 LDEL------------EPRV----QGGGKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNLQ 126 (172)
Q Consensus 67 ~~~~------------~~~~----~~~~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~~ 126 (172)
...+ .+.+ ..+..++-...+.+++. ..+|.+||++||++++.+|+..|. .+.......
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r-- 157 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR-- 157 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH--
Confidence 2222 1111 11222333334555543 357899999999999999999884 322222221
Q ss_pred hHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 127 CEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
+............++++|++ +.+++++..+++.+++.+.
T Consensus 158 ---i~~Q~~~~~k~~~ad~vI~N-~g~~e~l~~~v~~~~~~~~ 196 (200)
T PRK14734 158 ---IAAQIPDDVRLKAADIVVDN-NGTREQLLAQVDGLIAEIL 196 (200)
T ss_pred ---HHhcCCHHHHHHhCCEEEEC-cCCHHHHHHHHHHHHHHHH
Confidence 11111111111235667764 5589999888888877664
No 20
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.76 E-value=2.8e-17 Score=116.93 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=96.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc--------ccccccccccC-C----------CCcchhH-
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN--------QFYLKYDEQYE-C----------PELDEDK- 65 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~--------~~~~~~~~~~~-~----------~~~~~~~- 65 (172)
.+..|+|||.+||||||+++.|++++| ++++++|.+.++. .+...+|++.. . .+|....
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg-~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLN-LNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcC-CeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 346799999999999999999998899 9999999997764 11112222221 0 0111111
Q ss_pred -----------HHHHHHHHHhc-CCcEEeecccccCCc-----CCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhhch
Q psy6661 66 -----------LLDELEPRVQG-GGKIIDYHSAEMFPE-----RWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNLQC 127 (172)
Q Consensus 66 -----------~~~~~~~~~~~-~~~ii~~~~~~~~~~-----~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~~~ 127 (172)
+...+.+.+.. +..++-...|.+++. ..+|.++++.||++++.+|+.+|+ .++......
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~r--- 160 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAF--- 160 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH---
Confidence 12222222222 222222233555553 346889999999999999999985 333332221
Q ss_pred HHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 128 EIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
+............++++|++++.+.+++..+++.+++.+.
T Consensus 161 --i~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~~ 200 (204)
T PRK14733 161 --INLQISDKEREKIADFVIDNTELTDQELESKLITTINEIT 200 (204)
T ss_pred --HHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHHH
Confidence 1111222222223688998766699999999999888764
No 21
>PLN02422 dephospho-CoA kinase
Probab=99.75 E-value=2.4e-17 Score=119.23 Aligned_cols=154 Identities=19% Similarity=0.303 Sum_probs=91.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccCC------------CCcchhHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYEC------------PELDEDKL 66 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~~------------~~~~~~~~ 66 (172)
++|+|||.+||||||+++.|+ ++| ++++++|++.++. .+...+|++... .+|.....
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g-~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSG-IPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCC-CeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 579999999999999999998 579 9999999997764 111122222210 12211122
Q ss_pred HHHHHHHH----------------hcCCcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhhc
Q psy6661 67 LDELEPRV----------------QGGGKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNLQ 126 (172)
Q Consensus 67 ~~~~~~~~----------------~~~~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~~ 126 (172)
...++.++ ..+..++-...|.+++. ..+|.+++++||++++.+|+.+|+ .+.+.....
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R-- 157 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNR-- 157 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH--
Confidence 22222111 11111222333556653 457899999999999999999995 222222221
Q ss_pred hHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 127 CEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
++.........-.++++|+++ .+.+++..+++++++.+.
T Consensus 158 ---i~~Q~~~eek~~~AD~VI~N~-gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 158 ---INAQMPLDWKRSKADIVIDNS-GSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred ---HHHcCChhHHHhhCCEEEECC-CCHHHHHHHHHHHHHHHh
Confidence 111111111112256777654 599999999999988774
No 22
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.75 E-value=3.6e-17 Score=119.37 Aligned_cols=156 Identities=16% Similarity=0.232 Sum_probs=94.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---c------cccccccccC--C----------CCcchhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---Q------FYLKYDEQYE--C----------PELDEDK 65 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---~------~~~~~~~~~~--~----------~~~~~~~ 65 (172)
|.+|.|||.+||||||+++.|++++| ++++++|.+.++. + +...++.... . .+|....
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G-~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~ 79 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHH-IEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQ 79 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC-CeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHH
Confidence 36899999999999999999998889 9999999998764 0 1111111110 0 0121111
Q ss_pred HHHHHH------------HHHh-------------cC--CcEEeecccccCCc----CCcCEEEEEeCChHHHHHHHHhc
Q psy6661 66 LLDELE------------PRVQ-------------GG--GKIIDYHSAEMFPE----RWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 66 ~~~~~~------------~~~~-------------~~--~~ii~~~~~~~~~~----~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
....++ ..+. .+ .++++. |.+++. ..+|.+|++.||++++.+|+..|
T Consensus 80 ~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev--PLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R 157 (244)
T PTZ00451 80 ARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA--PTLFETKTFTYFVSASVVVSCSEERQIERLRKR 157 (244)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe--chhhccCchhhcCCeEEEEECCHHHHHHHHHHc
Confidence 111111 1110 11 244444 455553 24589999999999999999998
Q ss_pred C-CCCchhhhhhchHHHHHHHHHHHhhccCCcEEeCCC-CChhhHHHHHHHHHHHHHh
Q psy6661 115 G-QSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPS-NTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~e~~~~i~~i~~~~~~ 170 (172)
+ .+.......... ..........++++|++++ .+++++..++.++++++++
T Consensus 158 ~g~s~eea~~Ri~~-----Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~~ 210 (244)
T PTZ00451 158 NGFSKEEALQRIGS-----QMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMSR 210 (244)
T ss_pred CCCCHHHHHHHHHh-----CCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5 233332222111 1111122223577877651 6999999999999988863
No 23
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.75 E-value=4.6e-17 Score=115.73 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=88.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccCC--C----------CcchhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYEC--P----------ELDEDK 65 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~~--~----------~~~~~~ 65 (172)
|.+|+|+|++||||||+++.|++ +| ++++++|.+.++. .+...++++... . +|....
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g-~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 79 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LG-APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE 79 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cC-CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence 36899999999999999999998 89 9999999998764 011112222110 0 121111
Q ss_pred HHHHH------------HHHHhc----CCcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhh
Q psy6661 66 LLDEL------------EPRVQG----GGKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNL 125 (172)
Q Consensus 66 ~~~~~------------~~~~~~----~~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~ 125 (172)
.+..+ ...+.. ..++++. +.+++. ..+|.+|+++||++++.+|+.+|+ .+.......
T Consensus 80 ~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~--pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r- 156 (194)
T PRK00081 80 ARKKLEAILHPLIREEILEQLQEAESSPYVVLDI--PLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI- 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe--hHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH-
Confidence 22222 222221 2234444 444442 446899999999999999999985 222222211
Q ss_pred chHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 126 QCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
+............++++|+++ .+++++..++..+++.
T Consensus 157 ----i~~Q~~~~~~~~~ad~vI~N~-g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 157 ----IASQMPREEKLARADDVIDNN-GDLEELRKQVERLLQE 193 (194)
T ss_pred ----HHHhCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHh
Confidence 111111111111256777764 4899997777776643
No 24
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.74 E-value=3.4e-17 Score=116.41 Aligned_cols=151 Identities=16% Similarity=0.244 Sum_probs=88.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccC---C----------CCcchhH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYE---C----------PELDEDK 65 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~---~----------~~~~~~~ 65 (172)
++|+|+|++||||||+++.|++.+| +++++.|++.++. .+...+++... . .+|....
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g-~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG-IPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC-CeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 5799999999999999999999889 9999999997764 01111111110 0 0111111
Q ss_pred HHHHH------------HHHHhc---C-CcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhh
Q psy6661 66 LLDEL------------EPRVQG---G-GKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNL 125 (172)
Q Consensus 66 ~~~~~------------~~~~~~---~-~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~ 125 (172)
....+ ...+.. . .++++. |.+++. ..+|.+|+++||++++.+|+..|+ .+.......
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~--pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~r- 157 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELAQLKSNPIVVLVI--PLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEAR- 157 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--HHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH-
Confidence 11222 211211 1 233333 445542 457899999999999999999985 332222111
Q ss_pred chHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 126 QCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
+............++++|++ +.+.+++..++++++++
T Consensus 158 ----i~~Q~~~~~k~~~aD~vI~N-~g~~e~l~~qv~~~l~~ 194 (195)
T PRK14730 158 ----INAQWPLEEKVKLADVVLDN-SGDLEKLYQQVDQLLKF 194 (195)
T ss_pred ----HHhCCCHHHHHhhCCEEEEC-CCCHHHHHHHHHHHHhh
Confidence 11111111111125677764 55899998888887653
No 25
>PRK14531 adenylate kinase; Provisional
Probab=99.74 E-value=7.4e-17 Score=113.75 Aligned_cols=108 Identities=20% Similarity=0.357 Sum_probs=71.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-cccccccc------cCCCCcchhHHHHHHHHHHh---cC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDEQ------YECPELDEDKLLDELEPRVQ---GG 77 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~ 77 (172)
.+|+|+|+|||||||+++.|++++| +++++.+++++..- .....+.. ....+ ....+...+.+.+. .+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g-~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v-~d~l~~~~~~~~l~~~~~~ 80 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG-LRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELV-SDALVLAIVESQLKALNSG 80 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhhccCC
Confidence 4699999999999999999999999 99999989887541 00011110 11122 22333333433332 35
Q ss_pred CcEEeecccccCC-----------cCCcCEEEEEeCChHHHHHHHHhcCCC
Q psy6661 78 GKIIDYHSAEMFP-----------ERWIDQVYVLSADNTTLYDRLVEKGQS 117 (172)
Q Consensus 78 ~~ii~~~~~~~~~-----------~~~~~~~i~l~~~~~~~~~Rl~~r~~~ 117 (172)
++|+|+....... ...++.+++|+||++++.+|+..|++.
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~ 131 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRA 131 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCC
Confidence 6888875443211 123577999999999999999999753
No 26
>PRK14532 adenylate kinase; Provisional
Probab=99.74 E-value=7.9e-17 Score=114.05 Aligned_cols=155 Identities=16% Similarity=0.243 Sum_probs=90.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-cccccc------ccCCCCcchhHHHHHHHHHHh----cC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDE------QYECPELDEDKLLDELEPRVQ----GG 77 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~ 77 (172)
.|+|.|+|||||||+|+.|++++| +++++.+++++..-. -...+. .....++ ...+...+.+.+. .+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVS-DEIVIALIEERLPEAEAAG 79 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccC-HHHHHHHHHHHHhCcCccC
Confidence 589999999999999999999999 999999999876300 000010 0111222 2333444443332 24
Q ss_pred CcEEeecccc-----c----CC--cCCcCEEEEEeCChHHHHHHHHhcCCC--CchhhhhhchHHHHHHHHHHH---hhc
Q psy6661 78 GKIIDYHSAE-----M----FP--ERWIDQVYVLSADNTTLYDRLVEKGQS--GKKLQDNLQCEIFQTILEEAR---DSY 141 (172)
Q Consensus 78 ~~ii~~~~~~-----~----~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~~--~~~~~~~~~~~~~~~~~~~~~---~~~ 141 (172)
++|+|+.... . +. ...++.+|+|++|++++.+|+..|... +.......-...+..++.+.. +.|
T Consensus 80 g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y 159 (188)
T PRK14532 80 GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYY 159 (188)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888874321 1 11 134678999999999999999988421 111111111223444444442 334
Q ss_pred c-CCcEEeCC-CCChhhHHHHHHHHHHHH
Q psy6661 142 K-EDIVVSLP-SNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 142 ~-~~~~i~~~-~~~~~e~~~~i~~i~~~~ 168 (172)
. ....+.++ +.+++++ .++|.+.|
T Consensus 160 ~~~~~~~~id~~~~~eev---~~~I~~~l 185 (188)
T PRK14532 160 AGQGKLTEVDGMGSIEAV---AASIDAAL 185 (188)
T ss_pred HhcCCEEEEECCCCHHHH---HHHHHHHH
Confidence 3 23455555 4788898 44444444
No 27
>PRK06762 hypothetical protein; Provisional
Probab=99.72 E-value=2.4e-16 Score=109.42 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=92.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC-ceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCC-cEEeec
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS-LEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGG-KIIDYH 84 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~-~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~ 84 (172)
+.+|+|+|+|||||||+|+.|+++++. +.+++.|.+.... ..... .... .....+.......+..|. +|+++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l--~~~~~--~~~~-~~~~~~~~~~~~~~~~g~~vild~~ 76 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM--LRVKD--GPGN-LSIDLIEQLVRYGLGHCEFVILEGI 76 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh--ccccC--CCCC-cCHHHHHHHHHHHHhCCCEEEEchh
Confidence 468999999999999999999999841 6678877776542 11111 0011 112233333333344554 566653
Q ss_pred ccc-----cCC----c-CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEEeCCCCCh
Q psy6661 85 SAE-----MFP----E-RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTH 154 (172)
Q Consensus 85 ~~~-----~~~----~-~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 154 (172)
... .+. . ..+...|||++|++++.+|...|.... . ...+.+...+.+....+..+.++++++.++
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~-~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 151 (166)
T PRK06762 77 LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH-E----FGEDDMRRWWNPHDTLGVIGETIFTDNLSL 151 (166)
T ss_pred hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc-c----CCHHHHHHHHhhcCCcCCCCeEEecCCCCH
Confidence 211 111 1 112367999999999999999987321 1 123335555665554343567888999999
Q ss_pred hhHHHHHHHHHHHH
Q psy6661 155 DDMSSNVTSIIQFV 168 (172)
Q Consensus 155 ~e~~~~i~~i~~~~ 168 (172)
+++ +++|+.++
T Consensus 152 ~~v---~~~i~~~~ 162 (166)
T PRK06762 152 KDI---FDAILTDI 162 (166)
T ss_pred HHH---HHHHHHHh
Confidence 999 77777665
No 28
>PRK06217 hypothetical protein; Validated
Probab=99.72 E-value=2.5e-16 Score=111.09 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHH-hcCCcEEeecc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRV-QGGGKIIDYHS 85 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~ 85 (172)
|.+|+|+|+|||||||+++.|+++++ +++++.|++.+...-. .+..... .+.....+...+ ...+.|+++.+
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~-~~~~~~D~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~vi~G~~ 73 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLD-IPHLDTDDYFWLPTDP-----PFTTKRP-PEERLRLLLEDLRPREGWVLSGSA 73 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC-CcEEEcCceeeccCCC-----CccccCC-HHHHHHHHHHHHhcCCCEEEEccH
Confidence 35699999999999999999999999 9999999998754210 0101111 122233333333 34578888765
Q ss_pred cccCC--cCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 86 AEMFP--ERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 86 ~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
..... ...++.+|||++|.+++.+|+..|..
T Consensus 74 ~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 74 LGWGDPLEPLFDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred HHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcc
Confidence 44322 23368899999999999999999863
No 29
>PRK04040 adenylate kinase; Provisional
Probab=99.72 E-value=3.1e-16 Score=110.77 Aligned_cols=106 Identities=20% Similarity=0.327 Sum_probs=67.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc--CCceEEehhhHHhhc----ccccccccccCCCCcchhH----HHHHHHHHHhc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC--DSLEWIDVNKIAREN----QFYLKYDEQYECPELDEDK----LLDELEPRVQG 76 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l--~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 76 (172)
+++|+|+|+|||||||+++.|++++ + +.+++.+++.... ++....++...-...+... ....+.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~-~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~ 80 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKED-YKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGE 80 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccC-CeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcC
Confidence 4689999999999999999999999 7 9999999986543 2221111111111111111 22222222223
Q ss_pred CCcEEeeccccc-------------CCcCCcCEEEEEeCChHHHHHHHHh
Q psy6661 77 GGKIIDYHSAEM-------------FPERWIDQVYVLSADNTTLYDRLVE 113 (172)
Q Consensus 77 ~~~ii~~~~~~~-------------~~~~~~~~~i~l~~~~~~~~~Rl~~ 113 (172)
+.+++|+|.... +....++.+|++.++|++.++|...
T Consensus 81 ~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 81 GPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred CCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhc
Confidence 458899876311 1234568899999999999888774
No 30
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.72 E-value=1.7e-16 Score=120.32 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-c-----cccccccccCCCCcchhHHHHHHHHHHh-cC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-Q-----FYLKYDEQYECPELDEDKLLDELEPRVQ-GG 77 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 77 (172)
.+...|+|+|+|||||||+++.|++++| +++++.|..+... + ++...++...+. .-...+...+. .+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg-~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~-----~e~~~l~~ll~~~~ 204 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLG-VPFVELNREIEREAGLSVSEIFALYGQEGYRR-----LERRALERLIAEHE 204 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHH-----HHHHHHHHHHhhCC
Confidence 4577899999999999999999999999 9999999887654 1 111112111110 00111222222 23
Q ss_pred CcEEeecccccCC-----c-CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-CCcEEeCC
Q psy6661 78 GKIIDYHSAEMFP-----E-RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK-EDIVVSLP 150 (172)
Q Consensus 78 ~~ii~~~~~~~~~-----~-~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~ 150 (172)
.+|+......... . .....+|||++|++++.+|+..|+..++........+.+..++..+.+.|. .+++++++
T Consensus 205 ~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t~ 284 (309)
T PRK08154 205 EMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDTS 284 (309)
T ss_pred CEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECC
Confidence 3444321111000 0 012568999999999999999875322212121222335566677777666 45889998
Q ss_pred CCChhhHHHHHHHHH
Q psy6661 151 SNTHDDMSSNVTSII 165 (172)
Q Consensus 151 ~~~~~e~~~~i~~i~ 165 (172)
+.+++++.++|...+
T Consensus 285 ~~s~ee~~~~I~~~l 299 (309)
T PRK08154 285 GLTVAQSLARLRELV 299 (309)
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999955444444
No 31
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.72 E-value=2.6e-17 Score=131.18 Aligned_cols=139 Identities=25% Similarity=0.372 Sum_probs=93.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHH----HHhcC-
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEP----RVQGG- 77 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~- 77 (172)
+|+|+|+|||||||+++.|+++++ +++++.|.++.+. .++..+++++.+.. +...+..+.. +++.|
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg-~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~--E~~~l~~l~~~~~~Vis~Gg 78 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD-LQFIDMDEEIERREGRSVRRIFEEDGEEYFRLK--EKELLRELVERDNVVVATGG 78 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-CeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHH--HHHHHHHHhhcCCEEEECCC
Confidence 699999999999999999999999 9999999998664 22333333332211 2222332211 12223
Q ss_pred CcEEeecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEEeCCCCChhhH
Q psy6661 78 GKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDM 157 (172)
Q Consensus 78 ~~ii~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~ 157 (172)
+++++......+.+ ..+|||+++++++.+|+..++ ++..... .+.+..+|.++.+.|.....+|+++.+++++
T Consensus 79 gvv~~~~~r~~l~~---~~vI~L~as~e~l~~Rl~~~~--RPLl~~~--~e~l~~L~~~R~~lY~~~~~IDt~~~s~~e~ 151 (488)
T PRK13951 79 GVVIDPENRELLKK---EKTLFLYAPPEVLMERVTTEN--RPLLREG--KERIREIWERRKQFYTEFRGIDTSKLNEWET 151 (488)
T ss_pred ccccChHHHHHHhc---CeEEEEECCHHHHHHHhccCC--CCCcccc--HHHHHHHHHHHHHHHhcccEEECCCCCHHHH
Confidence 34445444444443 458999999999999997764 2322221 2346678888899997667999999998777
No 32
>PRK08118 topology modulation protein; Reviewed
Probab=99.71 E-value=6.1e-17 Score=112.44 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=73.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCcEEeeccc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKIIDYHSA 86 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 86 (172)
|+.|+|+|+|||||||+|+.|+++++ ++++++|.+.+..+. .. .+.+.+...+...+...+.|+++.+.
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~-~~~~~lD~l~~~~~w--------~~--~~~~~~~~~~~~~~~~~~wVidG~~~ 69 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLN-IPVHHLDALFWKPNW--------EG--VPKEEQITVQNELVKEDEWIIDGNYG 69 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-CCceecchhhcccCC--------cC--CCHHHHHHHHHHHhcCCCEEEeCCcc
Confidence 36799999999999999999999999 999999999775321 11 11234444555556667899998765
Q ss_pred ccCCc--CCcCEEEEEeCChHHHHHHHHhc
Q psy6661 87 EMFPE--RWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 87 ~~~~~--~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
...+. ..+|.+|||++|.+++..|+..|
T Consensus 70 ~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R 99 (167)
T PRK08118 70 GTMDIRLNAADTIIFLDIPRTICLYRAFKR 99 (167)
T ss_pred hHHHHHHHhCCEEEEEeCCHHHHHHHHHHH
Confidence 43321 23689999999999999999888
No 33
>PLN02200 adenylate kinase family protein
Probab=99.71 E-value=7.9e-16 Score=112.22 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-ccccc------ccCCCCcchhHHHHHHHHHHh---
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDE------QYECPELDEDKLLDELEPRVQ--- 75 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~--- 75 (172)
.+.+|+|+|+|||||||+|+.|++++| +++++.++++++.-.. ...+. .....+. .+.....+.+.+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g-~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp-~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG-FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVP-SEVTVKLIQKEMESSD 119 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC-CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCC
Confidence 456899999999999999999999999 9999999998764110 00000 0111221 2333333333332
Q ss_pred cCCcEEeeccccc-----CC---cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHH---HHHHHHHHHhhccC-
Q psy6661 76 GGGKIIDYHSAEM-----FP---ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEI---FQTILEEARDSYKE- 143 (172)
Q Consensus 76 ~~~~ii~~~~~~~-----~~---~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~- 143 (172)
..++|+|+..... +. ...++.+|+|+++++++.+|+..|+..+..-....-... +..........|+.
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~ 199 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKK 199 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2468998853221 11 124789999999999999999998632111000010111 22222222333432
Q ss_pred CcEEeCC-CCChhhHHHHHHHHHHHH
Q psy6661 144 DIVVSLP-SNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 144 ~~~i~~~-~~~~~e~~~~i~~i~~~~ 168 (172)
..++.+| +.+++++.+.+..++...
T Consensus 200 ~~~~~IDa~~~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 200 GKLYTINAVGTVDEIFEQVRPIFAAC 225 (234)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 2233333 558999966666555443
No 34
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.71 E-value=4e-17 Score=112.48 Aligned_cols=142 Identities=23% Similarity=0.306 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHHHHhcCCcEEee-cc---
Q psy6661 16 PGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEPRVQGGGKIIDY-HS--- 85 (172)
Q Consensus 16 ~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~--- 85 (172)
|||||||+++.||++|+ ++++|+|.++... .++...+++..+.. -.+.+.......+.||.. ..
T Consensus 1 ~GsGKStvg~~lA~~L~-~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~-----E~~~l~~l~~~~~~VIa~GGG~~~ 74 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG-RPFIDLDDEIEERTGMSISEIFAEEGEEAFREL-----ESEALRELLKENNCVIACGGGIVL 74 (158)
T ss_dssp TTSSHHHHHHHHHHHHT-SEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHH-----HHHHHHHHHCSSSEEEEE-TTGGG
T ss_pred CCCcHHHHHHHHHHHhC-CCccccCHHHHHHhCCcHHHHHHcCChHHHHHH-----HHHHHHHHhccCcEEEeCCCCCcC
Confidence 79999999999999999 9999999998664 23333333321111 122223333332444432 11
Q ss_pred ----cccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCCCChhhHHH
Q psy6661 86 ----AEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSNTHDDMSS 159 (172)
Q Consensus 86 ----~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~e~~~ 159 (172)
..++. ....+|||+++++++.+|+..+.. ++..............+.++.+.|. ++.++++++.+++++
T Consensus 75 ~~~~~~~L~--~~g~vI~L~~~~~~l~~Rl~~~~~-Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~~~~~~~~~i-- 149 (158)
T PF01202_consen 75 KEENRELLK--ENGLVIYLDADPEELAERLRARDN-RPLLKGKMEHEEILELLFEREPLYEQAADIVVDTDGSPPEEI-- 149 (158)
T ss_dssp SHHHHHHHH--HHSEEEEEE--HHHHHHHHHHHCT-SGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEETSSCHHHHH--
T ss_pred cHHHHHHHH--hCCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEeCCCCCHHHH--
Confidence 11222 236799999999999999988874 4444433322223333446666665 578888888777888
Q ss_pred HHHHHHHHHH
Q psy6661 160 NVTSIIQFVK 169 (172)
Q Consensus 160 ~i~~i~~~~~ 169 (172)
+++|++.|+
T Consensus 150 -~~~i~~~l~ 158 (158)
T PF01202_consen 150 -AEEILEFLK 158 (158)
T ss_dssp -HHHHHHHH-
T ss_pred -HHHHHHHhC
Confidence 777777663
No 35
>PRK01184 hypothetical protein; Provisional
Probab=99.70 E-value=4.3e-16 Score=109.91 Aligned_cols=155 Identities=16% Similarity=0.215 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---ccc----ccccccCC--CCcchhHHHHHHHHHHh-c
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---FYL----KYDEQYEC--PELDEDKLLDELEPRVQ-G 76 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~-~ 76 (172)
|++|+|+|+|||||||+++ +++++| ++++++++++++.- ... .+++.... .......+...+.+.+. .
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g-~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMG-IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREK 78 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcC-CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhc
Confidence 4689999999999999998 567789 99999988876531 000 01110000 00000111111112222 2
Q ss_pred --CCcEEeeccccc-----CCcC--CcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHH-----hhc-
Q psy6661 77 --GGKIIDYHSAEM-----FPER--WIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEAR-----DSY- 141 (172)
Q Consensus 77 --~~~ii~~~~~~~-----~~~~--~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~- 141 (172)
..+|+|+. +.. +... ....+|+++||++++.+|+..|+....... .+.+........ ..+
T Consensus 79 ~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~----~~~~~~r~~~q~~~~~~~~~~ 153 (184)
T PRK01184 79 GDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKS----WEELEERDERELSWGIGEVIA 153 (184)
T ss_pred CCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhh----HHHHHHHHHHHhccCHHHHHH
Confidence 34677764 221 1111 123689999999999999999874321111 111211111110 111
Q ss_pred cCCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 142 KEDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 142 ~~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
.++++|+ ++.+++++..++.++++.+.
T Consensus 154 ~ad~vI~-N~~~~~~l~~~v~~~~~~~~ 180 (184)
T PRK01184 154 LADYMIV-NDSTLEEFRARVRKLLERIL 180 (184)
T ss_pred hcCEEEe-CCCCHHHHHHHHHHHHHHHh
Confidence 2567777 45589999888888877664
No 36
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.70 E-value=1.4e-15 Score=107.51 Aligned_cols=110 Identities=25% Similarity=0.352 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-cccccc----cC-CCCcchhHHHHHHHHHH----h
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDEQ----YE-CPELDEDKLLDELEPRV----Q 75 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~----~ 75 (172)
+.++|+|.|+|||||||+++.|++++| +.+++.+++++..... ...+.. .. ....+...+...+.+.+ .
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG-FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG 80 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC
Confidence 457899999999999999999999999 9999999887653100 000000 00 11122233344443332 2
Q ss_pred c-CCcEEeeccccc-----CC--cCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 76 G-GGKIIDYHSAEM-----FP--ERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 76 ~-~~~ii~~~~~~~-----~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
. .++|+|+..... +. -..++.+|||++|++++.+|+..|+.
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 2 357888754322 11 12468899999999999999998873
No 37
>PRK13808 adenylate kinase; Provisional
Probab=99.70 E-value=7.3e-16 Score=116.56 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=70.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-ccccccc------ccCCCCcchhHHHHHHHHHHh----cC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDE------QYECPELDEDKLLDELEPRVQ----GG 77 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~ 77 (172)
+|+|.|||||||||+++.|++.|+ +++++.+++++..- --...+. .....+ +.+.+...+.+.+. ..
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg-l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lV-Pdeiv~~li~e~l~~~~~~~ 79 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG-IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLV-PDEVVVGIISDRIEQPDAAN 79 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CceecccHHHHHHhhcCChhhHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccccC
Confidence 589999999999999999999999 99999999987630 0000010 011122 22344444444332 24
Q ss_pred CcEEeeccccc-----CC------cCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 78 GKIIDYHSAEM-----FP------ERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 78 ~~ii~~~~~~~-----~~------~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
++|+|+..... +. ...+|.+|+|++|++++++|+..|
T Consensus 80 G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 80 GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 78999854331 11 125799999999999999999987
No 38
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.69 E-value=2e-15 Score=106.31 Aligned_cols=106 Identities=18% Similarity=0.296 Sum_probs=70.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-ccccc------ccCCCCcchhHHHHHHHHHHh---cCC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDE------QYECPELDEDKLLDELEPRVQ---GGG 78 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~ 78 (172)
+|+|+|+|||||||+|+.|++++| +.+++.+++++..-.. ...+. .....+ +.+.+...+...+. ..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~-~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~ 78 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG-FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIV-PSEVTVKLLKNAIQADGSKK 78 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcC-CHHHHHHHHHHHHhccCCCc
Confidence 589999999999999999999999 9999999888754110 00110 011112 12333344444333 235
Q ss_pred cEEeeccccc---------C-CcCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 79 KIIDYHSAEM---------F-PERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 79 ~ii~~~~~~~---------~-~~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
+|+|+..... + ....++.+|||++|++++.+|+..|+.
T Consensus 79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 8888853321 1 113468899999999999999999864
No 39
>PRK14530 adenylate kinase; Provisional
Probab=99.69 E-value=2.4e-15 Score=108.64 Aligned_cols=107 Identities=22% Similarity=0.349 Sum_probs=72.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccc-----cCCCCcchhHHHHHHHHHHh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQ-----YECPELDEDKLLDELEPRVQ 75 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 75 (172)
.++|+|.|+|||||||+++.|+++++ +++++.+++++... .....+.. ...... .......+...+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~-~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~-d~~~~~~l~~~l~ 80 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG-VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVP-DAVVNEIVEEALS 80 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Confidence 35799999999999999999999999 99999999988652 11111110 111121 2233444444443
Q ss_pred -cCCcEEeecccc-----cCC-cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 76 -GGGKIIDYHSAE-----MFP-ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 76 -~~~~ii~~~~~~-----~~~-~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..++|+++.... .+. ...++.+|+|++|++++.+|+..|.
T Consensus 81 ~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 81 DADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred cCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 357899884332 111 1236899999999999999999884
No 40
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.68 E-value=1.8e-15 Score=106.53 Aligned_cols=157 Identities=17% Similarity=0.296 Sum_probs=89.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc------------------cccccccCC--CCc-ch--
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY------------------LKYDEQYEC--PEL-DE-- 63 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~------------------~~~~~~~~~--~~~-~~-- 63 (172)
...|.|-||+||||||+|+.|+++|| ++|++++.+++...+. ....-.+.. .++ +.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg-~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLG-FHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhC-CCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence 48899999999999999999999999 9999987776643110 000111111 000 00
Q ss_pred ------------------------hHHHHHHHHHHhc-CCcEEeeccc--ccCCcCCcCEEEEEeCChHHHHHHHHhcC-
Q psy6661 64 ------------------------DKLLDELEPRVQG-GGKIIDYHSA--EMFPERWIDQVYVLSADNTTLYDRLVEKG- 115 (172)
Q Consensus 64 ------------------------~~~~~~~~~~~~~-~~~ii~~~~~--~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~- 115 (172)
..+......+... +|+|+||... ..|+. .++.|||+++++++.+|.-+-.
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV~Pd--A~lKiFLtAS~e~RA~RR~~q~~ 160 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVVFPD--AELKIFLTASPEERAERRYKQLQ 160 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceECCC--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 0011111122233 5689988542 34553 3789999999999988664332
Q ss_pred CCC-chhhhhhchHHHHHHHHHHH---hhcc---CCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 116 QSG-KKLQDNLQCEIFQTILEEAR---DSYK---EDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 116 ~~~-~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
... ....+....+...+-+.... ..+. .+..+|+++++.+|+ ++.|+.++.
T Consensus 161 ~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeV---v~~il~~~~ 218 (222)
T COG0283 161 AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEV---VEKILELIR 218 (222)
T ss_pred hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHH---HHHHHHHHH
Confidence 111 00012122221111111100 1111 248999999999999 777777765
No 41
>PRK14527 adenylate kinase; Provisional
Probab=99.68 E-value=2e-15 Score=107.14 Aligned_cols=111 Identities=20% Similarity=0.323 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-cccccc---cc-C-CCCcchhHHHHHHHHHHhc--
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDE---QY-E-CPELDEDKLLDELEPRVQG-- 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~---~~-~-~~~~~~~~~~~~~~~~~~~-- 76 (172)
.++++|+|.|+|||||||+++.|+++++ +.+++.+++++..-. ....+. .. . ........+...+.+.+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~-~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~ 82 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG-LKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME 82 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC-CCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 5678999999999999999999999999 999999999875310 000000 00 0 0111123344545554443
Q ss_pred -CCcEEeeccccc-----CC----c--CCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 77 -GGKIIDYHSAEM-----FP----E--RWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 77 -~~~ii~~~~~~~-----~~----~--~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
.++|+|+..... +. . ..++.+++|+||++++.+|+..|..
T Consensus 83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 358888743221 11 1 2356789999999999999999863
No 42
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.68 E-value=3.4e-15 Score=107.27 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---------cccccccccC----------------CCC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---------FYLKYDEQYE----------------CPE 60 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---------~~~~~~~~~~----------------~~~ 60 (172)
....|.|||++||||||+++.|++ +| +++++.|.+.++.. +...++.+.. ..+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g-~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MG-CELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CC-CeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 346799999999999999999997 79 99999998866530 0001111110 011
Q ss_pred cchhHHHHHHHHH------------H----hcC-CcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcCCC-Cc
Q psy6661 61 LDEDKLLDELEPR------------V----QGG-GKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKGQS-GK 119 (172)
Q Consensus 61 ~~~~~~~~~~~~~------------~----~~~-~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~~~-~~ 119 (172)
|.....+..++.+ + ..+ .+++ ...+.+++. ..++.+|++.||++++.+|+.+|+.. ..
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv-~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~e 160 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILV-KEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSRE 160 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEE-EEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCHH
Confidence 2212222222211 1 122 2222 223445543 34689999999999999999999742 12
Q ss_pred hhhhhhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 120 KLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
.+... +..........-.++++|++ +.+++++..++..+++.+.
T Consensus 161 ~~~~R-----i~~q~~~~~~~~~ad~vI~N-~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 161 EIRRR-----IAAQWPQEKLIERADYVIYN-NGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred HHHHH-----HHHcCChHHHHHhCCEEEEC-CCCHHHHHHHHHHHHHHHH
Confidence 22111 11111111111124667765 5689999888888877653
No 43
>PRK14528 adenylate kinase; Provisional
Probab=99.68 E-value=6.2e-16 Score=109.25 Aligned_cols=107 Identities=20% Similarity=0.298 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-ccccc---c---cCCCCcchhHHHHHHHHHHh----
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDE---Q---YECPELDEDKLLDELEPRVQ---- 75 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~---~---~~~~~~~~~~~~~~~~~~~~---- 75 (172)
|++|+|.|+|||||||+|+.|++++| +++++.+++++..-.. ...+. . ..... +...+...+.+.+.
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~-~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lv-p~~~~~~~~~~~l~~~~~ 78 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLS-IPQISTGDILREAVKNQTAMGIEAKRYMDAGDLV-PDSVVIGIIKDRIREADC 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCcc-CHHHHHHHHHHHHhCcCc
Confidence 46799999999999999999999999 9999999998763100 00000 0 01111 12233333333332
Q ss_pred cCCcEEeeccccc-----CC------cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 76 GGGKIIDYHSAEM-----FP------ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 76 ~~~~ii~~~~~~~-----~~------~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..++|+|+..... +. ...++.+|+|+||++++.+|+..|.
T Consensus 79 ~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~ 129 (186)
T PRK14528 79 KNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRA 129 (186)
T ss_pred cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCc
Confidence 2468998853321 11 1247899999999999999999985
No 44
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.68 E-value=9.1e-16 Score=108.94 Aligned_cols=154 Identities=16% Similarity=0.258 Sum_probs=87.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccC--C----------CCcchh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYE--C----------PELDED 64 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~--~----------~~~~~~ 64 (172)
++.+|.|||.+||||||+++.|++ +| ++++++|.++++. .....+|.+.. . .+|...
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~G-~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~ 78 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-LG-FPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDP 78 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-cC-CeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCH
Confidence 367899999999999999999998 89 9999999999854 01111121110 0 011111
Q ss_pred HHHHHHHHHHh--------------cCCcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcCC-CCchhhhhhc
Q psy6661 65 KLLDELEPRVQ--------------GGGKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKGQ-SGKKLQDNLQ 126 (172)
Q Consensus 65 ~~~~~~~~~~~--------------~~~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~~-~~~~~~~~~~ 126 (172)
.....++.+.. .+. ++-...|.+++. .+++.+|+++||++++.+|+.+|+. +.........
T Consensus 79 ~~~~~Le~i~hPli~~~~~~~~~~~~~~-~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~ 157 (201)
T COG0237 79 EARLKLEKILHPLIRAEIKVVIDGARSP-YVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLA 157 (201)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhCC-ceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 11111111111 122 111222444442 3368899999999999999999972 1112111111
Q ss_pred hHHHHHHHHHHHhhcc-CCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 127 CEIFQTILEEARDSYK-EDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
...... ..+. ++.++++ +.+++++.+++.++++.+.
T Consensus 158 -----~Q~~~~-ek~~~ad~vi~n-~~~i~~l~~~i~~~~~~~~ 194 (201)
T COG0237 158 -----SQRDLE-EKLALADVVIDN-DGSIENLLEQIEKLLKELL 194 (201)
T ss_pred -----hcCCHH-HHHhhcCChhhc-CCCHHHHHHHHHHHHHHHH
Confidence 101111 1122 4556654 5588888777877776654
No 45
>PRK08233 hypothetical protein; Provisional
Probab=99.68 E-value=1.4e-15 Score=106.97 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---c--cccccccccCCCCcchhHHHHHHHHHHhcC--C
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---Q--FYLKYDEQYECPELDEDKLLDELEPRVQGG--G 78 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 78 (172)
+..+|+|+|+|||||||+|+.|+++++....+..|.+.... . .+...+..+ ...+...+.+.+....... .
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 79 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANY--SEWVLTPLIKDIQELIAKSNVD 79 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCCh--hhhhhHHHHHHHHHHHcCCCce
Confidence 45889999999999999999999999735555555553211 0 000111111 1112345555555555443 3
Q ss_pred -cEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 79 -KIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 79 -~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
+++++......+ ...++.+|||++|++++.+|+..|..
T Consensus 80 ~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 120 (182)
T PRK08233 80 YIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDF 120 (182)
T ss_pred EEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHh
Confidence 355654433322 24478999999999999999887753
No 46
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.67 E-value=1.4e-15 Score=118.57 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=89.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccCC------------CCcchhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYEC------------PELDEDK 65 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~~------------~~~~~~~ 65 (172)
|.+|+|||++||||||+++.|++ +| ++++++|.++++. .+...+|++... .+|....
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~G-~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~ 78 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-LG-AVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDE 78 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CC-CeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHH
Confidence 35799999999999999999987 79 9999999998863 122223332211 0221111
Q ss_pred ------------HHHHHHHHHh--cC-CcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhc-CCCCchhhhhhc
Q psy6661 66 ------------LLDELEPRVQ--GG-GKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEK-GQSGKKLQDNLQ 126 (172)
Q Consensus 66 ------------~~~~~~~~~~--~~-~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r-~~~~~~~~~~~~ 126 (172)
+...+.+.+. .+ .+++. ..+.+++. ..+|.+|||+||++++.+|+..| +.+.........
T Consensus 79 ~~~~le~i~hP~I~~~i~~~i~~~~~~~vvv~-eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~ 157 (395)
T PRK03333 79 ARAVLNGIVHPLVGARRAELIAAAPEDAVVVE-DIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARARIA 157 (395)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCCEEEE-EeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2222222222 12 23343 44555553 45689999999999999999884 432222211111
Q ss_pred hHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 127 CEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
.+ ....+. ...++++|+ ++.+.+++..++..+++.+
T Consensus 158 ~Q---~~~e~k--~~~AD~vId-N~~s~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 158 AQ---ASDEQR--RAVADVWLD-NSGTPDELVEAVRALWADR 193 (395)
T ss_pred hc---CChHHH--HHhCCEEEE-CCCCHHHHHHHHHHHHHHH
Confidence 10 011111 112567777 5668889877777665443
No 47
>PRK08356 hypothetical protein; Provisional
Probab=99.66 E-value=3.1e-15 Score=106.52 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccC-----CCCcch----------hH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYE-----CPELDE----------DK 65 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~-----~~~~~~----------~~ 65 (172)
.++|+|+|+|||||||+|+.|++ +| +++++.++..++. +++......+. ..+.+. ..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g-~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KG-FCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CC-CcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 35799999999999999999965 89 9999988754432 11000000000 011111 11
Q ss_pred HHHHHHHHHh-cCCcEEeecccccCC----cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhh
Q psy6661 66 LLDELEPRVQ-GGGKIIDYHSAEMFP----ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDS 140 (172)
Q Consensus 66 ~~~~~~~~~~-~~~~ii~~~~~~~~~----~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (172)
+.....+.+. ...+++++. ...-. ......+|||+||++++.+|+..|+...++... ..+.+..++..+...
T Consensus 83 ~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~--~~e~~~~~~~~~~~l 159 (195)
T PRK08356 83 LIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIK--SFEDFLKFDEWEEKL 159 (195)
T ss_pred HHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccc--cHHHHHHHHHHHHHh
Confidence 1122222222 234677764 22211 112357899999999999999999754332211 111122222221111
Q ss_pred c-------cCCcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 141 Y-------KEDIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 141 ~-------~~~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
| .++++|++ +.+.+++..++..++..+
T Consensus 160 ~~~~~~~~~aD~vI~N-~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 160 YHTTKLKDKADFVIVN-EGTLEELRKKVEEILREL 193 (195)
T ss_pred hhhhhHHHhCcEEEEC-CCCHHHHHHHHHHHHHHh
Confidence 1 25667754 569999988888877665
No 48
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.66 E-value=4.3e-15 Score=105.59 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=88.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-----c----cccccccccCC------------CCcchhHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-----Q----FYLKYDEQYEC------------PELDEDKLL 67 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-----~----~~~~~~~~~~~------------~~~~~~~~~ 67 (172)
+|+|+|++||||||+++.|++ +| +++++.|.+.++. . +...+|..... .+|......
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g-~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~ 78 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LG-AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKL 78 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CC-CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHH
Confidence 489999999999999999976 69 9999999997764 0 11112222110 011111111
Q ss_pred HHH------------HHHH---hcCCc-EEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcCC-CCchhhhhhch
Q psy6661 68 DEL------------EPRV---QGGGK-IIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKGQ-SGKKLQDNLQC 127 (172)
Q Consensus 68 ~~~------------~~~~---~~~~~-ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~~-~~~~~~~~~~~ 127 (172)
..+ ...+ ..+.+ +++. |.+++. ..+|.+||++||++++.+|+..|+. +..........
T Consensus 79 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~--pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~ 156 (196)
T PRK14732 79 KALNELIHPLVRKDFQKILQTTAEGKLVIWEV--PLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIAS 156 (196)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe--eeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 111 1111 12233 3333 556653 4568999999999999999999952 22222221111
Q ss_pred HHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 128 EIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
+ .......-.++++|++ +.+.+++..+++.+++.+.
T Consensus 157 Q-----~~~~~k~~~aD~vI~N-~~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 157 Q-----LPITEKLKRADYIVRN-DGNREGLKEECKILYSTLL 192 (196)
T ss_pred c-----CCHHHHHHhCCEEEEC-CCCHHHHHHHHHHHHHHHH
Confidence 1 1111111125677765 4489999999999887663
No 49
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.65 E-value=1.8e-15 Score=105.96 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=74.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccCC------------CCcchhHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYEC------------PELDEDKLL 67 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~~------------~~~~~~~~~ 67 (172)
+|.|||..||||||+++.|++ +| ++++++|.+.++. .+...+|.+... .+|......
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G-~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LG-FPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT--EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CC-CCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 689999999999999999998 89 9999999998865 111112222210 012112222
Q ss_pred HHHHHH------------Hhc----CCcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhc-CCCCchhhhhhch
Q psy6661 68 DELEPR------------VQG----GGKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEK-GQSGKKLQDNLQC 127 (172)
Q Consensus 68 ~~~~~~------------~~~----~~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r-~~~~~~~~~~~~~ 127 (172)
..++.+ +.. ..++++ .|.+++. ..+|.+|++.||++++.+|+.+| +.+..........
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e--~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri~~ 157 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE--IPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARIAS 157 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE---TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE--cchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHHHh
Confidence 222222 111 123343 3556653 55799999999999999999988 4444443332222
Q ss_pred HHHHHHHHHHHhhccCCcEEeCCC
Q psy6661 128 EIFQTILEEARDSYKEDIVVSLPS 151 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~i~~~~ 151 (172)
+ .........++++|++++
T Consensus 158 Q-----~~~~~k~~~ad~vI~N~g 176 (180)
T PF01121_consen 158 Q-----MPDEEKRKRADFVIDNNG 176 (180)
T ss_dssp S-------HHHHHHH-SEEEE-SS
T ss_pred C-----CCHHHHHHhCCEEEECCC
Confidence 1 111112223678888654
No 50
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.65 E-value=3e-15 Score=104.81 Aligned_cols=150 Identities=12% Similarity=0.108 Sum_probs=84.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEE--ehhhHHhhccc-cccc--ccccCC--CCcc-------hhHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWI--DVNKIARENQF-YLKY--DEQYEC--PELD-------EDKLLDELEP 72 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i--~~d~~~~~~~~-~~~~--~~~~~~--~~~~-------~~~~~~~~~~ 72 (172)
.++|+|+|+|||||||+++.|+++++ .+++ +.|.+...... +... +..+.. .... ...+...+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 80 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA-EPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA 80 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC-CCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence 46899999999999999999999987 6654 56766543211 1000 000000 0000 1223344455
Q ss_pred HHhcC-CcEEeeccc--ccCCc------CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccC
Q psy6661 73 RVQGG-GKIIDYHSA--EMFPE------RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKE 143 (172)
Q Consensus 73 ~~~~~-~~ii~~~~~--~~~~~------~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (172)
.+..| ++|+|.... ..+.. ...-..|++.||.+++.+|+.+|+...+.+ ....+.........
T Consensus 81 ~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~~~--------~~~~~~~~~~~~~~ 152 (175)
T cd00227 81 MARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVPGQ--------ARKQARVVHAGVEY 152 (175)
T ss_pred HHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccchH--------HHHHHHHhcCCCcc
Confidence 55666 567775332 11111 101245889999999999999997321111 11111111111123
Q ss_pred CcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 144 DIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 144 ~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
+.++|++..+++|. +++|++.|
T Consensus 153 dl~iDts~~s~~e~---a~~i~~~l 174 (175)
T cd00227 153 DLEVDTTHKTPIEC---ARAIAARV 174 (175)
T ss_pred eEEEECCCCCHHHH---HHHHHHhc
Confidence 68999988899998 66666654
No 51
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.65 E-value=3.6e-15 Score=118.76 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc------cccc-c-----------cc------CCCC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY------LKYD-E-----------QY------ECPE 60 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~------~~~~-~-----------~~------~~~~ 60 (172)
.++.+|.|.|+|||||||+++.|+++|| +.+++.|.+.+..... .... . .. ...+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~-~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i 360 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLG-LLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRV 360 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC-CeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceE
Confidence 3568999999999999999999999999 9999988887653100 0000 0 00 0000
Q ss_pred -cch----------------------h----HHHHHHHHHHhcCCcEEeeccc--ccCCcCCcCEEEEEeCChHHHHHHH
Q psy6661 61 -LDE----------------------D----KLLDELEPRVQGGGKIIDYHSA--EMFPERWIDQVYVLSADNTTLYDRL 111 (172)
Q Consensus 61 -~~~----------------------~----~~~~~~~~~~~~~~~ii~~~~~--~~~~~~~~~~~i~l~~~~~~~~~Rl 111 (172)
++. . .+.....+....+++|+++... ..++. .++.|||+|+++++.+|.
T Consensus 361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~P~--AdlKIfL~As~evRa~RR 438 (512)
T PRK13477 361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPD--AELKIFLTASVEERARRR 438 (512)
T ss_pred EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEcCC--CCEEEEEECCHHHHHHHH
Confidence 000 0 1111112223346789998643 34543 488999999999999987
Q ss_pred HhcCCCCchhhhhhchHHHHHHHHHHH---------hhccC--CcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 112 VEKGQSGKKLQDNLQCEIFQTILEEAR---------DSYKE--DIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 112 ~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
..+...++.... ..+.+...+.++. +.|.. +++||+++++++++ ++.|++.+.
T Consensus 439 ~~~l~~Rpll~~--~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeV---v~~Il~~i~ 502 (512)
T PRK13477 439 ALDLQAQGFPVI--DLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEV---VDKIIDLYR 502 (512)
T ss_pred HhhhhhCCCccC--CHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHH---HHHHHHHHH
Confidence 654211111111 1122334444444 44443 48899999999999 666666654
No 52
>PLN02674 adenylate kinase
Probab=99.65 E-value=6.5e-15 Score=107.40 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-ccccccc------ccCCCCcchhHHHHHHHHHHhc-
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDE------QYECPELDEDKLLDELEPRVQG- 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~- 76 (172)
+..++|+|.|+|||||||+|+.|+++++ +++++.+++++..- .-...+. .....++ .......+.+.+..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~-~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvp-d~iv~~lv~~~l~~~ 106 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVS-DDLVVGIIDEAMKKP 106 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcC-CcEEchhHHHHHHHhccChhhHHHHHHHHcCCccC-HHHHHHHHHHHHhCc
Confidence 3457799999999999999999999999 99999999987640 0000111 1122232 23344444444432
Q ss_pred ---CCcEEeeccccc-----CC------cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 77 ---GGKIIDYHSAEM-----FP------ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 77 ---~~~ii~~~~~~~-----~~------~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.++|+|+..+.. ++ ...++.+|+|++|.+++.+|+..|.
T Consensus 107 ~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 107 SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred CcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 468898854332 11 1346889999999999999999883
No 53
>KOG3220|consensus
Probab=99.65 E-value=2.4e-15 Score=104.45 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=94.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---------ccccccccc------------CCCCcchhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---------FYLKYDEQY------------ECPELDEDK 65 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---------~~~~~~~~~------------~~~~~~~~~ 65 (172)
|.+|.|||..||||||+++.|. ++| +++||.|.++++.- +...++.+. ...+|....
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G-~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALG-IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcC-CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 4689999999999999999997 689 99999999988750 111122221 112332111
Q ss_pred ----------------HHHHHHHHHhcCCcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcCC-CCchhhhhh
Q psy6661 66 ----------------LLDELEPRVQGGGKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKGQ-SGKKLQDNL 125 (172)
Q Consensus 66 ----------------~~~~~~~~~~~~~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~~-~~~~~~~~~ 125 (172)
++.++...+..|..++--..|.+|+. ++...+|.+.||.++.++|+..|+. +++.....
T Consensus 79 ~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~R- 157 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENR- 157 (225)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHH-
Confidence 22222333344543332233667764 4556789999999999999999971 12211111
Q ss_pred chHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 126 QCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
++..+.-....-.++.++++ |.+++++.++++.+...++
T Consensus 158 ----l~sQmp~~~k~~~a~~Vi~N-ng~~~~l~~qv~~v~~~~~ 196 (225)
T KOG3220|consen 158 ----LQSQMPLEKKCELADVVIDN-NGSLEDLYEQVEKVLALLQ 196 (225)
T ss_pred ----HHhcCCHHHHHHhhheeecC-CCChHHHHHHHHHHHHHhc
Confidence 11111111111123566654 6699999999999988775
No 54
>KOG3079|consensus
Probab=99.64 E-value=1.6e-14 Score=99.14 Aligned_cols=113 Identities=24% Similarity=0.365 Sum_probs=78.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc--ccccccc-----CCCCcchhHHHHHHHHHHhc
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY--LKYDEQY-----ECPELDEDKLLDELEPRVQG 76 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 76 (172)
..+.++|++.|+|||||-|+|..++++|| +.+++++++++....- ..++... ...+.......+.+.+.+..
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~-ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYG-FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcC-ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999 9999999998875111 1111100 01122234555666555542
Q ss_pred ----CCcEEeeccccc-----CCc---CCcCEEEEEeCChHHHHHHHHhcCCC
Q psy6661 77 ----GGKIIDYHSAEM-----FPE---RWIDQVYVLSADNTTLYDRLVEKGQS 117 (172)
Q Consensus 77 ----~~~ii~~~~~~~-----~~~---~~~~~~i~l~~~~~~~~~Rl~~r~~~ 117 (172)
.+.+||+..+.. |++ ..+++++|++|+.+++.+|+..|+.+
T Consensus 84 ~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 84 SGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred cCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 237888743322 221 13689999999999999999999865
No 55
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.64 E-value=1.1e-14 Score=102.41 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhh---chHHHHHHHHHHHhhccCCc--EEeCC----CCChhhHHHHHH
Q psy6661 92 RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNL---QCEIFQTILEEARDSYKEDI--VVSLP----SNTHDDMSSNVT 162 (172)
Q Consensus 92 ~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~i~~~----~~~~~e~~~~i~ 162 (172)
..|++.|||+|+.+++++|+.+|+++-+..-... ..+.+...|......|..|. .|+.+ ..++++....+.
T Consensus 125 ~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~ 204 (216)
T COG1428 125 GRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLD 204 (216)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHH
Confidence 3689999999999999999999997654222222 34557777888777776443 33333 245666666666
Q ss_pred HHHHHHH
Q psy6661 163 SIIQFVK 169 (172)
Q Consensus 163 ~i~~~~~ 169 (172)
.|...+.
T Consensus 205 ~I~~~~~ 211 (216)
T COG1428 205 QILAKLK 211 (216)
T ss_pred HHHHHHh
Confidence 6666654
No 56
>PRK02496 adk adenylate kinase; Provisional
Probab=99.63 E-value=1.9e-14 Score=101.56 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=71.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-ccccc---c---cCCCCcchhHHHHHHHHHHh----
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDE---Q---YECPELDEDKLLDELEPRVQ---- 75 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~---~---~~~~~~~~~~~~~~~~~~~~---- 75 (172)
|++|+|+|+|||||||+++.|+++++ +++++.+++++..-.- ...+. . ..... ..+.+...+.+.+.
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~-~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~-~~~~~~~~l~~~l~~~~~ 78 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLH-IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELV-PDQLVLDLVQERLQQPDA 78 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCcc-CHHHHHHHHHHHHhCcCc
Confidence 35699999999999999999999999 9999999988763100 00000 0 01111 22333444444333
Q ss_pred cCCcEEeecccc-----cCC------cCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 76 GGGKIIDYHSAE-----MFP------ERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 76 ~~~~ii~~~~~~-----~~~------~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
..++|+|+.... .+. ...++.+|+|++|++++.+|+..|+.
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 130 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR 130 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC
Confidence 236888875321 111 12468899999999999999999974
No 57
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.63 E-value=1.9e-14 Score=103.64 Aligned_cols=106 Identities=20% Similarity=0.350 Sum_probs=71.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-ccccccc---c--CCCCcchhHHHHHHHHHHhc-----C
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDEQ---Y--ECPELDEDKLLDELEPRVQG-----G 77 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~-----~ 77 (172)
+|+|.|+|||||||+|+.|++++| +++++.+++++..-. ....+.. . .....+...+.+.+.+.+.. .
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g-~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYG-LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 489999999999999999999999 999999999876300 0000110 0 01122233445555554432 3
Q ss_pred CcEEeeccccc-----CCc--C-CcCEEEEEeCChHHHHHHHHhcC
Q psy6661 78 GKIIDYHSAEM-----FPE--R-WIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 78 ~~ii~~~~~~~-----~~~--~-~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
++|+|+..... +.. . .++.+|+|++|.+++.+|+..|.
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 68999843322 111 1 46889999999999999999884
No 58
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.62 E-value=3.2e-15 Score=104.73 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=87.0
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHH-h
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRV-Q 75 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (172)
|.++.++.+|+|+|+|||||||+++.|++++.. ..+++.|.+.... ...+...... .+.......+...+ .
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~---~~~~~~~~~~-~~~~~~~~~l~~~l~~ 76 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL---GHYGYDKQSR-IEMALKRAKLAKFLAD 76 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc---CCCCCCHHHH-HHHHHHHHHHHHHHHh
Confidence 677788899999999999999999999988741 4566766664321 1111100000 00111222233323 3
Q ss_pred cCC-cEEeecccc--cC---C-cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcE
Q psy6661 76 GGG-KIIDYHSAE--MF---P-ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIV 146 (172)
Q Consensus 76 ~~~-~ii~~~~~~--~~---~-~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 146 (172)
.|. +|+++.... .. . ...+..+|||+||++++.+|+..+.. ... ..+.+..++..+.+.|. ++.+
T Consensus 77 ~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~-~~~-----~~~~~~~~~~~~~~~~~~~Ad~v 150 (176)
T PRK05541 77 QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLY-TKA-----LKGEIKNVVGVDIPFDEPKADLV 150 (176)
T ss_pred CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHH-HHH-----HcCcccccccCCCcccCCCCCEE
Confidence 443 555553321 10 0 01124679999999999999754211 010 01113334444444443 5688
Q ss_pred EeCCC-CChhhHHHHHHHHHHHHH
Q psy6661 147 VSLPS-NTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 147 i~~~~-~~~~e~~~~i~~i~~~~~ 169 (172)
|++++ .++++. +++|++.+.
T Consensus 151 I~~~~~~~~~~~---v~~i~~~l~ 171 (176)
T PRK05541 151 IDNSCRTSLDEK---VDLILNKLK 171 (176)
T ss_pred EeCCCCCCHHHH---HHHHHHHHH
Confidence 88875 366665 777777664
No 59
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.61 E-value=7.7e-15 Score=103.89 Aligned_cols=145 Identities=19% Similarity=0.270 Sum_probs=82.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccCC------------CCcchhH--
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYEC------------PELDEDK-- 65 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~~------------~~~~~~~-- 65 (172)
+|+|+|.+||||||+++.|++..+ +++++.|.++++. .+...++++... .+|....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~-~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH-FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHH
Confidence 489999999999999999999888 9999999997653 011112221110 0121111
Q ss_pred ----------HHHHHHHHH----hcC-CcEEeecccccCC---cCCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhhc
Q psy6661 66 ----------LLDELEPRV----QGG-GKIIDYHSAEMFP---ERWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNLQ 126 (172)
Q Consensus 66 ----------~~~~~~~~~----~~~-~~ii~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~~ 126 (172)
+...+...+ ..+ .++++. +.+++ ...++.++++++|++++.+|+..|+ .+...+...
T Consensus 80 ~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~--pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r-- 155 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV--PLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKR-- 155 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc--hHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH--
Confidence 111111111 122 234443 33332 2456889999999999999999986 222222221
Q ss_pred hHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHH
Q psy6661 127 CEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVT 162 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~ 162 (172)
+............++++|++ +.+++++..++.
T Consensus 156 ---~~~q~~~~~~~~~ad~vI~N-~~~~e~l~~~~~ 187 (188)
T TIGR00152 156 ---LASQMDIEERLARADDVIDN-SATLADLVKQLE 187 (188)
T ss_pred ---HHhcCCHHHHHHhCCEEEEC-CCCHHHHHHHHh
Confidence 11111111112235677765 458888866554
No 60
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.60 E-value=1.7e-14 Score=104.70 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARE 45 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~ 45 (172)
|+..+|.|.|++||||||+++.|++++| +++++.+.+.+.
T Consensus 2 ~~~~~i~i~g~~gsGksti~~~la~~~~-~~~~~~~~~~r~ 41 (225)
T PRK00023 2 MKAIVIAIDGPAGSGKGTVAKILAKKLG-FHYLDTGAMYRA 41 (225)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhC-CCcccCchhHHH
Confidence 4457899999999999999999999999 999998887554
No 61
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.60 E-value=2.5e-14 Score=103.29 Aligned_cols=106 Identities=15% Similarity=0.276 Sum_probs=69.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-cccccccc-----CCCCcchhHHHHHHHHHHhc----CC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDEQY-----ECPELDEDKLLDELEPRVQG----GG 78 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~ 78 (172)
+|+|.|+|||||||+|+.|+++++ +++++.+++++..-. -...+... .......+.+...+.+.+.. .+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~-~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG-IPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 599999999999999999999999 999999888775300 00001000 00111223444444444432 37
Q ss_pred cEEeecccc-----cC----C--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 79 KIIDYHSAE-----MF----P--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 79 ~ii~~~~~~-----~~----~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+|+|+.... .+ . ...++.+|+|+||.+++.+|+..|.
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 899884221 12 1 1235789999999999999999985
No 62
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.60 E-value=6.8e-14 Score=100.64 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC--CceEEehhhHHhhcccccc---cccccCC-CCcchhHHHHHHHHHHhc--
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD--SLEWIDVNKIARENQFYLK---YDEQYEC-PELDEDKLLDELEPRVQG-- 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~~i~~d~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~-- 76 (172)
.+..+|.|+|+|||||||+++.|++.++ .+.+++.|++......... ....+.. ..++...+.+.+..+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 5678999999999999999999999983 1567888887553311100 0001111 112334444444332210
Q ss_pred -----------------------CCcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 77 -----------------------GGKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 77 -----------------------~~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.-+|+++....... ...+|.+|||++|.+++++|...|.
T Consensus 84 v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd 147 (209)
T PRK05480 84 IEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRD 147 (209)
T ss_pred cccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhc
Confidence 11344443321111 2457899999999999999988886
No 63
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.59 E-value=8.9e-15 Score=99.29 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=66.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcc-hhHHHHHHHHHHhcCCcEEeecccc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELD-EDKLLDELEPRVQGGGKIIDYHSAE 87 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~ 87 (172)
+|+|+|+|||||||+|+.|+++++ +++++.|.+..+. +....+... .... ...+...+......+++|+++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~-~~~~~~~~i~~e~--~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~ 76 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG-LPYLDTGGIRTEE--VGKLASEVA-AIPEVRKALDERQRELAKKPGIVLEGRDIG 76 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-CceeccccCCHHH--HHHHHHHhc-ccHhHHHHHHHHHHHHhhCCCEEEEeeeee
Confidence 589999999999999999999999 9999988543321 111001000 0000 1122233333444567899886643
Q ss_pred cCCcCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 88 MFPERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 88 ~~~~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
......++.+|||++|++++.+|+..|
T Consensus 77 ~~~~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 77 TVVFPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred eEEcCCCCEEEEEECCHHHHHHHHHHH
Confidence 222223688999999999999999884
No 64
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.59 E-value=5.5e-14 Score=101.42 Aligned_cols=149 Identities=20% Similarity=0.285 Sum_probs=86.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-------cc-----------ccccccccC--C----CCcch
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-------QF-----------YLKYDEQYE--C----PELDE 63 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-------~~-----------~~~~~~~~~--~----~~~~~ 63 (172)
.+|.|+||+||||||+++.|+++++ +++++.+.+.+.. +. ....+..+. . .+++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~-~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG-YAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 5799999999999999999999999 9999988775432 00 000000000 0 00000
Q ss_pred --------------------------hHHHHHHHHHHhcCCcEEeecc-cc-cCCcCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 64 --------------------------DKLLDELEPRVQGGGKIIDYHS-AE-MFPERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 64 --------------------------~~~~~~~~~~~~~~~~ii~~~~-~~-~~~~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..+...+.+....+++|+++.. .. .++. .++.|||++|++++.+|...+.
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~~~v~~~--a~~~ifl~a~~~~Ra~Rr~~~~ 159 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIGTVVFPN--AEVKIFLDASVEERAKRRYKQL 159 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcceEEeCC--CCEEEEEECCHHHHHHHHHHHH
Confidence 1123333333445689999865 22 3332 5789999999999988887764
Q ss_pred CCC-chhhhhhchHHHHHHHHHH--------Hhhcc---CCcEEeCCCCChhhHHHHHHHHHH
Q psy6661 116 QSG-KKLQDNLQCEIFQTILEEA--------RDSYK---EDIVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 116 ~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
... .. ...+.+...+..+ ...+. ...+||+++++++++ ++.|++
T Consensus 160 ~~~g~~----~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ieev---v~~I~~ 215 (217)
T TIGR00017 160 QIKGNE----VNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLSIDEV---VEKILE 215 (217)
T ss_pred hccCCC----CCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCCHHHH---HHHHHH
Confidence 110 01 0001111111111 01111 237799999999998 666554
No 65
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.59 E-value=1.9e-14 Score=101.15 Aligned_cols=103 Identities=23% Similarity=0.326 Sum_probs=64.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccC--C----------CCcchhHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYE--C----------PELDEDKLL 67 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~--~----------~~~~~~~~~ 67 (172)
+|+|+|++||||||+++.|++ +| ++++++|.+.++. .+...++.... . .+|......
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g-~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 78 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG-IPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKR 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC-CCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHH
Confidence 489999999999999999998 89 9999999998764 11111222110 0 011111111
Q ss_pred HHH------------HHHHhc--C-C-cEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 68 DEL------------EPRVQG--G-G-KIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 68 ~~~------------~~~~~~--~-~-~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..+ ...+.. . . ++++. +.+++. ..+|.+++++||++++.+|+..|.
T Consensus 79 ~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~--plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 79 KKLEAITHPLIRKEIEEQLAEARKEKVVVLDI--PLLFETGLEKLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCEEEEEe--hHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC
Confidence 111 121211 1 2 33343 445543 457899999999999999999985
No 66
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.7e-14 Score=94.77 Aligned_cols=143 Identities=13% Similarity=0.238 Sum_probs=83.8
Q ss_pred cCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcch--hHHHHHHHHHHh----cCC-cEEee---
Q psy6661 14 GTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDE--DKLLDELEPRVQ----GGG-KIIDY--- 83 (172)
Q Consensus 14 G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~-~ii~~--- 83 (172)
|.+||||||++.+|++++| ++|++.|++....++-. .....+.-|+ ..+++.+.+... .+. +|+..
T Consensus 2 GVsG~GKStvg~~lA~~lg-~~fidGDdlHp~aNi~K---M~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSAL 77 (161)
T COG3265 2 GVSGSGKSTVGSALAERLG-AKFIDGDDLHPPANIEK---MSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSAL 77 (161)
T ss_pred CCCccCHHHHHHHHHHHcC-CceecccccCCHHHHHH---HhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHH
Confidence 8999999999999999999 99999999855432110 1111122122 246666655443 222 34432
Q ss_pred --cccccCCcCCcCE-EEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccC--CcEEeCCCCChhhHH
Q psy6661 84 --HSAEMFPERWIDQ-VYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKE--DIVVSLPSNTHDDMS 158 (172)
Q Consensus 84 --~~~~~~~~~~~~~-~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~e~~ 158 (172)
.++..++...+++ .|||+.+.+++.+|+..|... -+... .+...+..-...-.. ...||+ +.+++++
T Consensus 78 Kr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gH--FM~~~----ll~SQfa~LE~P~~de~vi~idi-~~~~e~v- 149 (161)
T COG3265 78 KRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGH--FMPAS----LLDSQFATLEEPGADEDVLTIDI-DQPPEEV- 149 (161)
T ss_pred HHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccC--CCCHH----HHHHHHHHhcCCCCCCCEEEeeC-CCCHHHH-
Confidence 2334444444555 479999999999999999732 22211 122222221111111 244444 4578888
Q ss_pred HHHHHHHHHHHh
Q psy6661 159 SNVTSIIQFVKQ 170 (172)
Q Consensus 159 ~~i~~i~~~~~~ 170 (172)
+++++.++..
T Consensus 150 --v~~~~~~l~~ 159 (161)
T COG3265 150 --VAQALAWLKE 159 (161)
T ss_pred --HHHHHHHHhc
Confidence 7777777754
No 67
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.58 E-value=3.6e-15 Score=98.17 Aligned_cols=104 Identities=28% Similarity=0.352 Sum_probs=60.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCC-CcchhHHHHHHHHHHh---cCCcEEeec
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECP-ELDEDKLLDELEPRVQ---GGGKIIDYH 84 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~ii~~~ 84 (172)
+|+|+|+|||||||+|+.|++++| +++++.|++++....... ....... ..+.+.+...+..... ..++|+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-~~~i~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~ 78 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-FPVISMDDLIREPGWIER-DDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGS 78 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-CEEEEEHHHHCCGTHCHG-CTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-CeEEEecceEEecccccc-CcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCC
Confidence 589999999999999999999999 999999996444332211 1111100 0011222333333322 234788874
Q ss_pred ccc--cCCcCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 85 SAE--MFPERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 85 ~~~--~~~~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
... .+.....+.+||+.++.+++..|+.+|
T Consensus 79 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 79 YESEMEIRLPEFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp SCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred CccchhhhhhcCCEEEEEECCCHHHHHHHHHH
Confidence 321 112223467899999998555544444
No 68
>PRK13975 thymidylate kinase; Provisional
Probab=99.57 E-value=5.1e-14 Score=100.21 Aligned_cols=154 Identities=16% Similarity=0.248 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEE--ehhhH----Hhhccccccc--ccccCCCCcchh--HHHHHHHHHHhc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWI--DVNKI----ARENQFYLKY--DEQYECPELDED--KLLDELEPRVQG 76 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i--~~d~~----~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~ 76 (172)
.++|+|.|++||||||+++.|+++++ ..+. ..+.. +++ ++... .......++..+ ..+..+...+..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~-~~~~~~~~~~~~g~~ir~--~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~ 78 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN-AFWTCEPTDGKIGKLIRE--ILSGSKCDKETLALLFAADRVEHVKEIEEDLKK 78 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CCeeECCCCChHHHHHHH--HHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36899999999999999999999998 5432 22222 221 11100 000000011111 112233333333
Q ss_pred CCcEEeecc-------------cccC---C--cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHH
Q psy6661 77 GGKIIDYHS-------------AEMF---P--ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEAR 138 (172)
Q Consensus 77 ~~~ii~~~~-------------~~~~---~--~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 138 (172)
..++.|... ..+. . ...++.+|||++|++++.+|+..|+. +........+.+...|.+..
T Consensus 79 ~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~--~~~~~~~~~~~~~~~y~~~~ 156 (196)
T PRK13975 79 RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDK--EIFEKKEFLKKVQEKYLELA 156 (196)
T ss_pred CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCc--cccchHHHHHHHHHHHHHHH
Confidence 345554210 0000 0 12478999999999999999998862 21111111122344444443
Q ss_pred hh--cc---CCcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 139 DS--YK---EDIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 139 ~~--~~---~~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
.. |. ...+||+++.+++++ .++|.+.+
T Consensus 157 ~~~~~~~~~~~~~Id~~~~~~eev---~~~I~~~i 188 (196)
T PRK13975 157 NNEKFMPKYGFIVIDTTNKSIEEV---FNEILNKI 188 (196)
T ss_pred hhcccCCcCCEEEEECCCCCHHHH---HHHHHHHH
Confidence 31 11 246788777899999 45554444
No 69
>PRK07261 topology modulation protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=101.57 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=73.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCcEEeecccc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKIIDYHSAE 87 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 87 (172)
++|+|+|+|||||||+|+.|++.++ +++++.|.+.+..+ +... +.+.+...+...+..+..|+|+.+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~-~~~i~~D~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~wIidg~~~~ 69 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN-CPVLHLDTLHFQPN--------WQER--DDDDMIADISNFLLKHDWIIDGNYSW 69 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC-CCeEecCCEEeccc--------cccC--CHHHHHHHHHHHHhCCCEEEcCcchh
Confidence 3699999999999999999999999 99999888755322 1111 23456677777777777999998765
Q ss_pred cC-C--cCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 88 MF-P--ERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 88 ~~-~--~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
.. . -..+|.+|||++|..++..|+.+|
T Consensus 70 ~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 70 CLYEERMQEADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred hhHHHHHHHCCEEEEEcCCHHHHHHHHHHH
Confidence 32 2 124688999999999999999877
No 70
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.57 E-value=6.3e-15 Score=97.72 Aligned_cols=108 Identities=30% Similarity=0.377 Sum_probs=59.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccccccc-c-cCCCCcc---hhHHHHHHHHHH---h-cCCcE
Q psy6661 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDE-Q-YECPELD---EDKLLDELEPRV---Q-GGGKI 80 (172)
Q Consensus 10 I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~-~-~~~~~~~---~~~~~~~~~~~~---~-~~~~i 80 (172)
|+|+|+|||||||+|+.|+++++ ..+.+ .............. . .....++ ...+...+.... . ...+|
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-DIIRD--IAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNII 77 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-HHHHH--HHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEE
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-cHHHH--HHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEE
Confidence 78999999999999999999974 22222 11111100000000 0 0011111 123444444332 2 24678
Q ss_pred EeecccccCCcCCcCEE-EEEeCChHHHHHHHHhcCCCCch
Q psy6661 81 IDYHSAEMFPERWIDQV-YVLSADNTTLYDRLVEKGQSGKK 120 (172)
Q Consensus 81 i~~~~~~~~~~~~~~~~-i~l~~~~~~~~~Rl~~r~~~~~~ 120 (172)
+++.............. |||+||++++.+|+..|......
T Consensus 78 id~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~~~ 118 (129)
T PF13238_consen 78 IDGILSNLELERLFDIKFIFLDCSPEELRKRLKKRGRKEEK 118 (129)
T ss_dssp EEESSEEECETTEEEESSEEEE--HHHHHHHHHCTTTSCHH
T ss_pred EecccchhcccccceeeEEEEECCHHHHHHHHHhCCCCCCC
Confidence 88876555443323334 99999999999999999854433
No 71
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.56 E-value=6.6e-15 Score=100.52 Aligned_cols=154 Identities=13% Similarity=0.101 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC--c--eEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCcE
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS--L--EWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKI 80 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~--~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (172)
+++.+|++||.|||||||+|.+|.++|-+ + -++|.|.+.... ....+-+..... ..-.-+..+...+...|+|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL--~~dLgFs~edR~-eniRRvaevAkll~daG~i 97 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL--NRDLGFSREDRI-ENIRRVAEVAKLLADAGLI 97 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc--cCCCCCChHHHH-HHHHHHHHHHHHHHHCCeE
Confidence 45679999999999999999999998732 3 356777775542 211111111111 0112334445566666654
Q ss_pred Eeecccc-----------cCCcCCcCE-EEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEEe
Q psy6661 81 IDYHSAE-----------MFPERWIDQ-VYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVS 148 (172)
Q Consensus 81 i~~~~~~-----------~~~~~~~~~-~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 148 (172)
+-..... ++.. .++ -||++||.++|.+|--+.-+....-.+......+...|+ .....+..++
T Consensus 98 viva~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE---~P~~Pel~l~ 172 (197)
T COG0529 98 VIVAFISPYREDRQMARELLGE--GEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYE---APENPELHLD 172 (197)
T ss_pred EEEEeeCccHHHHHHHHHHhCc--CceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCC---CCCCCeeEec
Confidence 4322111 1111 134 499999999999997654321111111111111111122 1112468888
Q ss_pred CCCCChhhHHHHHHHHHHHHH
Q psy6661 149 LPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 149 ~~~~~~~e~~~~i~~i~~~~~ 169 (172)
++..++++. ++.|++++.
T Consensus 173 t~~~~vee~---v~~i~~~l~ 190 (197)
T COG0529 173 TDRNSVEEC---VEQILDLLK 190 (197)
T ss_pred cccCCHHHH---HHHHHHHHH
Confidence 888898888 777777764
No 72
>PLN02459 probable adenylate kinase
Probab=99.56 E-value=1.6e-13 Score=100.70 Aligned_cols=106 Identities=21% Similarity=0.259 Sum_probs=71.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-ccccccccc------cCCCCcchhHHHHHHHHHHh-----
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-QFYLKYDEQ------YECPELDEDKLLDELEPRVQ----- 75 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----- 75 (172)
..|+|.|+|||||||+|+.|+++++ +.+++.+++++.. ..-...+.. ....+ +...+...+.+.+.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~-~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lV-Pdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG-VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLV-PDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCcc-CHHHHHHHHHHHHhccccc
Confidence 4588899999999999999999999 9999999998764 000011111 11122 23344444444442
Q ss_pred -cCCcEEeeccccc-----CC-cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 76 -GGGKIIDYHSAEM-----FP-ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 76 -~~~~ii~~~~~~~-----~~-~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..++|+|+..+.. +. ...++.+|+|+++.+++.+|+..|.
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 2468898854332 21 1235889999999999999999883
No 73
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.56 E-value=3.8e-14 Score=100.18 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCC----cch--------hHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPE----LDE--------DKLLD 68 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~----~~~--------~~~~~ 68 (172)
..+|+|.|||||||||+++.|+..++ ..++..+...... ..+...++++.+.+ +.+ .....
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-TQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-CeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence 35799999999999999999999877 6766655543322 11111111111100 000 01111
Q ss_pred HHHHHHhcCC-cEEeecccc---cCCc-CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-
Q psy6661 69 ELEPRVQGGG-KIIDYHSAE---MFPE-RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK- 142 (172)
Q Consensus 69 ~~~~~~~~~~-~ii~~~~~~---~~~~-~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (172)
.+...++.+. +|+++.... +... .....+|||++|++++.+|+..|+.... + .+...+.. ...|.
T Consensus 81 ~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~---~-----~i~~rl~r-~~~~~~ 151 (186)
T PRK10078 81 EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENA---S-----EINARLAR-AARYQP 151 (186)
T ss_pred HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCH---H-----HHHHHHHH-hhhhcc
Confidence 2344445553 455543211 1111 1124578999999999999998863211 1 12222221 22232
Q ss_pred CCcEEeCCCCChhhHHHHHHHHH
Q psy6661 143 EDIVVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 143 ~~~~i~~~~~~~~e~~~~i~~i~ 165 (172)
.+.++..++.+++++.+++..++
T Consensus 152 ad~~vi~~~~s~ee~~~~i~~~l 174 (186)
T PRK10078 152 QDCHTLNNDGSLRQSVDTLLTLL 174 (186)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHH
Confidence 34344446778999954444443
No 74
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.56 E-value=1.9e-13 Score=99.24 Aligned_cols=107 Identities=20% Similarity=0.280 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-ccccccc------cCCCCcchhHHHHHHHHHHhc---
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDEQ------YECPELDEDKLLDELEPRVQG--- 76 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--- 76 (172)
+.+|+|.|+|||||||+|+.|++++| +++++.++++++.-. ....+.. ....+ ..+.+.+.+.+.+..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g-~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lv-pd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKEN-LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLV-PDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcC-CHHHHHHHHHHHHHhhcc
Confidence 34599999999999999999999999 999999999886410 0011111 01112 223444444443322
Q ss_pred ---CCcEEeeccccc-----C-CcCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 77 ---GGKIIDYHSAEM-----F-PERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 77 ---~~~ii~~~~~~~-----~-~~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.++++|+..... + ....++.+|+|+++.+++.+|+..|.
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 367888843222 1 11346889999999999999999884
No 75
>PRK13973 thymidylate kinase; Provisional
Probab=99.56 E-value=1.4e-13 Score=99.35 Aligned_cols=161 Identities=13% Similarity=0.148 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---CCceEEeh--------hhHHhhcccc---cccccccCCCCc--ch-hHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---DSLEWIDV--------NKIARENQFY---LKYDEQYECPEL--DE-DKLLD 68 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i~~--------d~~~~~~~~~---~~~~~~~~~~~~--~~-~~~~~ 68 (172)
+.++|.|.|++||||||+++.|++.| | ++++.+ .+.+++.-.. ...++......+ +. +.+..
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g-~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~ 80 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAG-YDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEE 80 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCC-CeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999 6 777654 3333332000 000000000010 11 12233
Q ss_pred HHHHHHhcCCcEEeecc----------c-cc-------CC-----cCCcCEEEEEeCChHHHHHHHHhcCCCC--chhhh
Q psy6661 69 ELEPRVQGGGKIIDYHS----------A-EM-------FP-----ERWIDQVYVLSADNTTLYDRLVEKGQSG--KKLQD 123 (172)
Q Consensus 69 ~~~~~~~~~~~ii~~~~----------~-~~-------~~-----~~~~~~~i~l~~~~~~~~~Rl~~r~~~~--~~~~~ 123 (172)
.+.+.+..|.+|+...+ + .+ +. ...||.+|||+||++++.+|+..|+... .....
T Consensus 81 ~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~ 160 (213)
T PRK13973 81 VIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEK 160 (213)
T ss_pred HHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhh
Confidence 34555566655542111 0 00 00 1247999999999999999999986321 11111
Q ss_pred h--hchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 124 N--LQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 124 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
. ...+.....|.+....+...+.+..++.+++++..+|..++..
T Consensus 161 ~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~ 206 (213)
T PRK13973 161 EDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQ 206 (213)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 0 1111233334333332322223223467889996666665543
No 76
>KOG3354|consensus
Probab=99.55 E-value=1.1e-13 Score=92.45 Aligned_cols=106 Identities=21% Similarity=0.357 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchh--HHHHHHHHHH----hcC-Cc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDED--KLLDELEPRV----QGG-GK 79 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~-~~ 79 (172)
...|++.|++||||||++++|+++|+ ++|+++|++....+.- ......+.-|.+ .++..+.... ..+ ++
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~-~~F~dgDd~Hp~~Nve---KM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~v 87 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELG-LKFIDGDDLHPPANVE---KMTQGIPLNDDDRWPWLKKIAVELRKALASGQGV 87 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhC-CcccccccCCCHHHHH---HHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeE
Confidence 34899999999999999999999999 9999999995432110 011111111211 3444444322 223 45
Q ss_pred EEeec-----ccccCCc--------CCc--C-EEEEEeCChHHHHHHHHhcCC
Q psy6661 80 IIDYH-----SAEMFPE--------RWI--D-QVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 80 ii~~~-----~~~~~~~--------~~~--~-~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
|+... ++.++.. ..+ . ..|+|.++.+++.+|+..|..
T Consensus 88 VlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g 140 (191)
T KOG3354|consen 88 VLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG 140 (191)
T ss_pred EEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc
Confidence 55432 1222221 111 1 368999999999999999973
No 77
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.54 E-value=6e-14 Score=117.03 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=34.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN 46 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~ 46 (172)
.+|.|.|||||||||+++.|++++| +.+++++.+++..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~-~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG-YAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CcEeecCcEeHHH
Confidence 4799999999999999999999999 9999988876654
No 78
>PRK14526 adenylate kinase; Provisional
Probab=99.54 E-value=2.1e-13 Score=97.95 Aligned_cols=105 Identities=16% Similarity=0.256 Sum_probs=68.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-ccccc------ccCCCCcchhHHHHHHHHHHh----cC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDE------QYECPELDEDKLLDELEPRVQ----GG 77 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~ 77 (172)
.|+|+|+|||||||+++.|++.++ +++++.++++++.-.- ...+. .....+ ........+.+.+. ..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~-~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lv-pd~~~~~lv~~~l~~~~~~~ 79 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN-YYHISTGDLFRENILNSTPLGKEIKQIVENGQLV-PDSITIKIVEDKINTIKNND 79 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CceeecChHHHHhcccCChhhHHHHHHHHcCccC-ChHHHHHHHHHHHhcccccC
Confidence 588999999999999999999999 9999999998764100 00010 011122 12233444444443 24
Q ss_pred CcEEeeccccc-----CCcCCc-CEEEEEeCChHHHHHHHHhcC
Q psy6661 78 GKIIDYHSAEM-----FPERWI-DQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 78 ~~ii~~~~~~~-----~~~~~~-~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
++|+|+..+.. +....+ ..++++.+|++++.+|+..|.
T Consensus 80 g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 80 NFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred cEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence 68888754322 221112 346789999999999999884
No 79
>PRK14529 adenylate kinase; Provisional
Probab=99.53 E-value=2.2e-13 Score=98.25 Aligned_cols=105 Identities=22% Similarity=0.209 Sum_probs=71.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-cccccccc------CCCCcchhHHHHHHHHHHh---cCC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDEQY------ECPELDEDKLLDELEPRVQ---GGG 78 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~ 78 (172)
+|+|.|+|||||||+++.|+++++ +++++.++++++.-. -...+... ...+ ..+.....+.+.+. ..+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~-~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lv-pdei~~~lv~~~l~~~~~~g 79 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD-LAHIESGAIFREHIGGGTELGKKAKEYIDRGDLV-PDDITIPMILETLKQDGKNG 79 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CCCcccchhhhhhccCCChHHHHHHHHHhccCcc-hHHHHHHHHHHHHhccCCCc
Confidence 589999999999999999999999 999999888876410 00011111 1122 12334444444443 246
Q ss_pred cEEeeccccc-----CC------cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 79 KIIDYHSAEM-----FP------ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 79 ~ii~~~~~~~-----~~------~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+|+|+..+.. +. ...++.+|+|++|.+++.+|+..|.
T Consensus 80 ~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 80 WLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 8998854322 11 1347889999999999999999883
No 80
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.52 E-value=1.6e-13 Score=113.68 Aligned_cols=155 Identities=18% Similarity=0.270 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccc-c-----ccc------------ccC--CCCcch---
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL-K-----YDE------------QYE--CPELDE--- 63 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~-~-----~~~------------~~~--~~~~~~--- 63 (172)
.++|.|.||+||||||+++.|+++|+ +++++.+.+.+...+.. . .++ .+. ..+++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG-YHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV 520 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC-CeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence 56899999999999999999999999 99999988877541100 0 000 000 000000
Q ss_pred ----------------------hHHHHHHH-HHHhcCCcEEeecccc--cCCcCCcCEEEEEeCChHHHHHHHHhc----
Q psy6661 64 ----------------------DKLLDELE-PRVQGGGKIIDYHSAE--MFPERWIDQVYVLSADNTTLYDRLVEK---- 114 (172)
Q Consensus 64 ----------------------~~~~~~~~-~~~~~~~~ii~~~~~~--~~~~~~~~~~i~l~~~~~~~~~Rl~~r---- 114 (172)
...+...+ +....+++|+++...- .++. .++.|||+|+++++.+|....
T Consensus 521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdigtvv~p~--a~~kifl~a~~~~Ra~Rr~~~~~~~ 598 (661)
T PRK11860 521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMGTVIFPD--AALKVFLTASAEARAERRYKQLISK 598 (661)
T ss_pred hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCccEECCC--CCeEEEEECChhHHHHHHHHHHHhC
Confidence 01111112 2223467899886532 4443 478999999999998877542
Q ss_pred CCCCchhhhhhchHHHHHHHHHH---Hhhcc---CCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 115 GQSGKKLQDNLQCEIFQTILEEA---RDSYK---EDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
+. ...+ +....+...+-+... ...+. .+.+||+++++++|+ ++.|++.++
T Consensus 599 ~~-~~~~-~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v---~~~i~~~i~ 654 (661)
T PRK11860 599 GI-SANI-ADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQA---VAQVLDWWQ 654 (661)
T ss_pred CC-CCCH-HHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHH---HHHHHHHHH
Confidence 21 0111 111111111111111 01111 358899999999999 777777664
No 81
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.52 E-value=6.2e-14 Score=99.53 Aligned_cols=107 Identities=22% Similarity=0.351 Sum_probs=71.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-cccccc----cC-CCCcchhHHHHHHHHHHhc----CC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDEQ----YE-CPELDEDKLLDELEPRVQG----GG 78 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~~----~~ 78 (172)
+|+|+|+|||||||+|+.|++++| +.+++.+++++....- ...+.. .. ....+.+.+...+...+.. .+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~-~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG-LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence 489999999999999999999999 9999999998764100 000100 00 1112233444555554442 46
Q ss_pred cEEeecccc-----cCC-----cCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 79 KIIDYHSAE-----MFP-----ERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 79 ~ii~~~~~~-----~~~-----~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
+|+++.... .+. ...++.+|+|+||++++.+|+..|..
T Consensus 80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 888874321 111 12568899999999999999999864
No 82
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.52 E-value=5e-14 Score=114.25 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCc------eEEehhhHHhhcccccccccccCCCCcchhH----HHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSL------EWIDVNKIARENQFYLKYDEQYECPELDEDK----LLDELEPRV 74 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~------~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 74 (172)
++..+|+|+|.|||||||+|+.|+++++ . .+++.|.+.... .. +...+. .+... +.......+
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~-~~~g~~~~~lD~D~vr~~l--~g---e~~f~~-~er~~~~~~l~~~a~~v~ 462 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLM-EMRGRPVTLLDGDVVRKHL--SS---ELGFSK-EDRDLNILRIGFVASEIT 462 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhh-hccCceEEEeCCcHHHHhc--cC---CCCCCH-HHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998 5 788887764322 11 111000 00111 222233455
Q ss_pred hcCCc-EEeeccc---------ccCCcCCcC-EEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-
Q psy6661 75 QGGGK-IIDYHSA---------EMFPERWID-QVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK- 142 (172)
Q Consensus 75 ~~~~~-ii~~~~~---------~~~~~~~~~-~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (172)
+.|+. |++...+ .++... .. .+|||++|++++.+|....- +.. ...+.+..++..+.+.|.
T Consensus 463 ~~Gg~vI~~~~~p~~~~R~~nr~llk~~-g~fivV~L~~p~e~l~~R~rr~L-----l~~-~~~~~i~~l~~~R~~yy~p 535 (568)
T PRK05537 463 KNGGIAICAPIAPYRATRREVREMIEAY-GGFIEVHVATPLEVCEQRDRKGL-----YAK-AREGKIKGFTGISDPYEPP 535 (568)
T ss_pred hCCCEEEEEeCCchHHHHHHHHHHHhhc-CCEEEEEEcCCHHHHHHhccccc-----ccc-chhchhhccccccccccCC
Confidence 66654 4453222 222222 23 46899999999999963221 111 112224455555566553
Q ss_pred --CCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 143 --EDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 143 --~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
++++||+++.+++++ +++|+.++.
T Consensus 536 ~~Adl~IDt~~~s~~ei---v~~Il~~L~ 561 (568)
T PRK05537 536 ANPELVIDTTNVTPDEC---AHKILLYLE 561 (568)
T ss_pred CCCcEEEECCCCCHHHH---HHHHHHHHH
Confidence 468999988899999 677776664
No 83
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.52 E-value=1.4e-13 Score=98.17 Aligned_cols=152 Identities=12% Similarity=0.103 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc-----CCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC-----DSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGK 79 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
.++.+|+|+|+|||||||+++.|++.+ + ..+++.|.+.... ....+-...........+..........|.+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~-~~~ld~d~~~~~~--~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~ 98 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVS-TYLLDGDNVRHGL--CSDLGFSDADRKENIRRVGEVAKLMVDAGLV 98 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCC-EEEEcCEeHHhhh--hhcCCcCcccHHHHHHHHHHHHHHHhhCCCE
Confidence 457789999999999999999999876 3 4566766665331 1100000000000001122222223344555
Q ss_pred EEeeccc-c-----cCCc--CCcCE-EEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc----CCcE
Q psy6661 80 IIDYHSA-E-----MFPE--RWIDQ-VYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK----EDIV 146 (172)
Q Consensus 80 ii~~~~~-~-----~~~~--~~~~~-~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 146 (172)
|+..... . .+.. ...++ +|||+||++++.+|.. |. .+.... .+.+..++..+.+ |. ++++
T Consensus 99 VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~-r~----l~~~~~-~~~~~~l~~~r~~-Y~~p~~ad~~ 171 (198)
T PRK03846 99 VLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP-KG----LYKKAR-AGEIRNFTGIDSV-YEAPESPEIH 171 (198)
T ss_pred EEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc-hh----HHHHhh-cCCccCccccccc-CCCCCCCCEE
Confidence 5533211 1 0110 11244 6999999999999921 11 111000 0001112223333 54 4688
Q ss_pred EeCCCCChhhHHHHHHHHHHHHH
Q psy6661 147 VSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 147 i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
|++++.+++++ +++|++.+.
T Consensus 172 Idt~~~~~~~v---v~~Il~~l~ 191 (198)
T PRK03846 172 LDTGEQLVTNL---VEQLLDYLR 191 (198)
T ss_pred EECCCCCHHHH---HHHHHHHHH
Confidence 88889999998 777777775
No 84
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.51 E-value=6.4e-13 Score=99.43 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcC--CcEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGG--GKIID 82 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ii~ 82 (172)
..+.+|+|+|+|||||||+++.|++ .| +..++.-....- ..+++......... .+++|
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~-~g-~~~~d~~~~~L~------------------~~l~~~~~~~~~~~~~av~iD 63 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED-LG-YYCVDNLPPSLL------------------PKLVELLAQSGGIRKVAVVID 63 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH-cC-CeEECCcCHHHH------------------HHHHHHHHhcCCCCCeEEEEc
Confidence 4557999999999999999999975 58 776652111000 01111111100001 12223
Q ss_pred ecccccC----------CcC-CcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHH---hhcc-CCcEE
Q psy6661 83 YHSAEMF----------PER-WIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEAR---DSYK-EDIVV 147 (172)
Q Consensus 83 ~~~~~~~----------~~~-~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~i 147 (172)
......+ ... ..-.+|||+++++++.+|+..+.+.++.... . .....++.++. +.+. ++.+|
T Consensus 64 ~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~-~--~l~e~I~~eR~~l~pl~~~ADivI 140 (288)
T PRK05416 64 VRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGD-G--SLLEGIELERELLAPLRERADLVI 140 (288)
T ss_pred cCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCC-c--cHHHHHHHHHhhhhhHHHhCCEEE
Confidence 2111110 011 1124699999999999999764323332221 1 11222333332 2232 57999
Q ss_pred eCCCCChhhHHHHHHHH
Q psy6661 148 SLPSNTHDDMSSNVTSI 164 (172)
Q Consensus 148 ~~~~~~~~e~~~~i~~i 164 (172)
||++.+++++.+.+.+.
T Consensus 141 DTs~ls~~el~e~I~~~ 157 (288)
T PRK05416 141 DTSELSVHQLRERIRER 157 (288)
T ss_pred ECCCCCHHHHHHHHHHH
Confidence 99999999994444443
No 85
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.51 E-value=1.8e-12 Score=87.85 Aligned_cols=159 Identities=15% Similarity=0.224 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc-CCceEEehhhHHhhc----ccccccccccCCCCcchhHHHHHH--HHHHhcCC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC-DSLEWIDVNKIAREN----QFYLKYDEQYECPELDEDKLLDEL--EPRVQGGG 78 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 78 (172)
.+++++++|.||+||||+++.+.+.+ + ++++..+++..+. ++... .++......+.+..++.. .++...+.
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l~~-~~ivNyG~~Mle~A~k~glve~-rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~ 80 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKELVK-HKIVNYGDLMLEIAKKKGLVEH-RDEMRKLPLENQRELQAEAAKRIAEMAL 80 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHHhh-ceeeeHhHHHHHHHHHhCCccc-HHHHhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 36899999999999999999999998 7 8999998886554 22211 122223333444333332 22333344
Q ss_pred -cEEeecccc-------------cCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhch---HHHHHHHHHHHhhc
Q psy6661 79 -KIIDYHSAE-------------MFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQC---EIFQTILEEARDSY 141 (172)
Q Consensus 79 -~ii~~~~~~-------------~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 141 (172)
+++|.|... .++.-.++.++.|.++|+.++.|-.+.....++....... +.++..+.-+...+
T Consensus 81 ~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~ 160 (189)
T COG2019 81 EIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAIL 160 (189)
T ss_pred ceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 788776421 1223446889999999998888776553222222221111 11333233333222
Q ss_pred cCC--cEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 142 KED--IVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 142 ~~~--~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
... .++.+.+..+++. +.+|+..|.
T Consensus 161 ~gatVkIV~n~~~~~e~A---a~eiv~~l~ 187 (189)
T COG2019 161 LGATVKIVENHEGDPEEA---AEEIVELLD 187 (189)
T ss_pred hCCeEEEEeCCCCCHHHH---HHHHHHHHh
Confidence 223 3444444456666 666666654
No 86
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.50 E-value=3.5e-13 Score=93.24 Aligned_cols=105 Identities=15% Similarity=0.245 Sum_probs=61.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-cccccccCCC-Ccc-hhHHHHHHHHHHhcCC-cEEeecc
Q psy6661 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDEQYECP-ELD-EDKLLDELEPRVQGGG-KIIDYHS 85 (172)
Q Consensus 10 I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~ii~~~~ 85 (172)
|+|+|+|||||||+++.|++.++ ..+++.|++....... ...+...... ... ...+.+.+...+..++ +|++...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~ 79 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSA 79 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 57999999999999999999999 9999999874321000 0001111000 000 0122233333344443 4554432
Q ss_pred c-----ccCCcCCcCE-EEEEeCChHHHHHHHHhcC
Q psy6661 86 A-----EMFPERWIDQ-VYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 86 ~-----~~~~~~~~~~-~i~l~~~~~~~~~Rl~~r~ 115 (172)
. ..+....+++ ++|+++|++++.+|+..|.
T Consensus 80 ~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 80 LKRHYRDILREAEPNLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred cHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhcc
Confidence 1 1111222344 5899999999999999996
No 87
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.49 E-value=1.2e-12 Score=92.46 Aligned_cols=149 Identities=14% Similarity=0.279 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh----------------------hhHHhh--cccccccccccCCCC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV----------------------NKIARE--NQFYLKYDEQYECPE 60 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~----------------------d~~~~~--~~~~~~~~~~~~~~~ 60 (172)
.++++|+|+|||||||||+++.|.+++.++ +... +++... .+.|..++.-....+
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 357889999999999999999999886522 2211 111110 011222211111111
Q ss_pred cchhHHHHHHHHHHhcCC-cEEeecc--cccCCcCCcC--EEEEEeC-ChHHHHHHHHhcCCC-CchhhhhhchHHHHHH
Q psy6661 61 LDEDKLLDELEPRVQGGG-KIIDYHS--AEMFPERWID--QVYVLSA-DNTTLYDRLVEKGQS-GKKLQDNLQCEIFQTI 133 (172)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~ii~~~~--~~~~~~~~~~--~~i~l~~-~~~~~~~Rl~~r~~~-~~~~~~~~~~~~~~~~ 133 (172)
....+.+...+..|. +|++... ...+....++ .+||+.+ +.+++.+|+..|+.. ...+... +...
T Consensus 81 ---Gt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~R-----l~~~ 152 (186)
T PRK14737 81 ---GTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKR-----IENG 152 (186)
T ss_pred ---cCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHH-----HHHH
Confidence 123344566666664 4454321 1122222333 4688887 578999999999742 2222221 2221
Q ss_pred HHHHHhhccCCcEEeCCCCChhhHHHHHHHH
Q psy6661 134 LEEARDSYKEDIVVSLPSNTHDDMSSNVTSI 164 (172)
Q Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i 164 (172)
..+.......+.+|+++ +++++..++..+
T Consensus 153 ~~e~~~~~~~D~vI~N~--dle~a~~ql~~i 181 (186)
T PRK14737 153 IIELDEANEFDYKIIND--DLEDAIADLEAI 181 (186)
T ss_pred HHHHhhhccCCEEEECc--CHHHHHHHHHHH
Confidence 11211112246677654 677884444443
No 88
>PTZ00301 uridine kinase; Provisional
Probab=99.49 E-value=5.3e-13 Score=95.73 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc----CC--ceEEehhhHHhhccccccccc---ccCC-CCcchhHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC----DS--LEWIDVNKIARENQFYLKYDE---QYEC-PELDEDKLLDELEPRV 74 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l----~~--~~~i~~d~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~ 74 (172)
|+..+|.|+|+|||||||+|+.|++++ +. ..+++.|.+.......+.... .+.. ..+|.+.+.+.+..+.
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~ 80 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELK 80 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHH
Confidence 355889999999999999999988765 21 235667777654321111111 1221 1345556666664433
Q ss_pred hc------------------------C-CcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 75 QG------------------------G-GKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 75 ~~------------------------~-~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
.. . -+|++|.+....+ ....|..|||+++.++++.|...|..
T Consensus 81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~ 149 (210)
T PTZ00301 81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDM 149 (210)
T ss_pred cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhH
Confidence 21 1 1233554331111 24568899999999999999988863
No 89
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.48 E-value=1.4e-13 Score=92.98 Aligned_cols=106 Identities=23% Similarity=0.300 Sum_probs=67.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcc-----hhHHHHHHHHHHhcC-CcEEe
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELD-----EDKLLDELEPRVQGG-GKIID 82 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~ii~ 82 (172)
+|+++|+|||||||+++.|++.++ +.+++.|.+...... ...... ....+ ...+...+...+..| ++|++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-~~~i~~D~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd 76 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-AVVISQDEIRRRLAG--EDPPSP-SDYIEAEERAYQILNAAIRKALRNGNSVVVD 76 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-EEEEEHHHHHHHHCC--SSSGCC-CCCHHHHHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-CEEEeHHHHHHHHcc--cccccc-hhHHHHHHHHHHHHHHHHHHHHHcCCCceec
Confidence 589999999999999999999999 999999998765311 111110 01100 112334444555555 46676
Q ss_pred eccccc---------CCcCC-cCEEEEEeCChHHHHHHHHhcCCCC
Q psy6661 83 YHSAEM---------FPERW-IDQVYVLSADNTTLYDRLVEKGQSG 118 (172)
Q Consensus 83 ~~~~~~---------~~~~~-~~~~i~l~~~~~~~~~Rl~~r~~~~ 118 (172)
...... ..... .-.+|+++++.+++.+|+..|....
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 77 NTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREG 122 (143)
T ss_dssp SS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcc
Confidence 432211 11122 2346899999999999999997543
No 90
>PRK06547 hypothetical protein; Provisional
Probab=99.47 E-value=3.8e-13 Score=93.72 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-----------cccccccccCCCCcch--hHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-----------FYLKYDEQYECPELDE--DKLLDELE 71 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~~~~~~ 71 (172)
..+.+|+|+|+|||||||+++.|++.++ +++++.|++..... .+...+...... +|. ... ...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~-yd~~~~~~-~~~- 88 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG-FQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWR-WDWANNRP-GDW- 88 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCeecccceecccccCChHHHHHHHHHHhCCCCceec-CCCCCCCC-CCc-
Confidence 5678899999999999999999999999 99999988865320 010001000000 000 000 000
Q ss_pred HHHhc-CCcEEeecccccC-CcCCcC-----EEEEEeCChHHHHHHHHhcCC
Q psy6661 72 PRVQG-GGKIIDYHSAEMF-PERWID-----QVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 72 ~~~~~-~~~ii~~~~~~~~-~~~~~~-----~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
..+.. +.+|+++...... .+...+ ++|||++|.+++.+|+..|..
T Consensus 89 ~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~ 140 (172)
T PRK06547 89 VSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDP 140 (172)
T ss_pred EEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCc
Confidence 01112 2456777543210 012345 789999999999999999974
No 91
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.47 E-value=3.2e-13 Score=95.04 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=68.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccc---cccCC-CCcchhHHHHHHHHHHhcC-------
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYD---EQYEC-PELDEDKLLDELEPRVQGG------- 77 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~------- 77 (172)
+|+|+|+|||||||+|+.|++.++.+.+++.|++........... ..+.. ..+|.+.+.+.+..+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 589999999999999999999984389999999976542111100 01111 1234455555554433211
Q ss_pred --------------------------------CcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 78 --------------------------------GKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 78 --------------------------------~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
-+++++......+ ...+|.+|||+++.+++++|...|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~ 152 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREART 152 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcC
Confidence 1344443211111 2456889999999999999999996
No 92
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.46 E-value=1e-12 Score=91.37 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=75.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceE--EehhhHHhhcc--cc-cccccccC------CCCcc--hhHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEW--IDVNKIARENQ--FY-LKYDEQYE------CPELD--EDKLLDELEPRV 74 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~--i~~d~~~~~~~--~~-~~~~~~~~------~~~~~--~~~~~~~~~~~~ 74 (172)
.+|+|+|+|.|||||++++|.+.+. -++ +..|.+..... .. ...+-.+. ...+. ...+...+....
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~-~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP-EPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS-S-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc-CCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998 664 56787766321 10 00010000 00000 112333333334
Q ss_pred hcC-CcEEeecc--cc----cCCc--CCcC-EEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCC
Q psy6661 75 QGG-GKIIDYHS--AE----MFPE--RWID-QVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKED 144 (172)
Q Consensus 75 ~~~-~~ii~~~~--~~----~~~~--~~~~-~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (172)
..| ++|+|... +. .+.+ ...+ +.|-|.||.+++.+|...|+........ ...+ ..+. ... -+
T Consensus 81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G~a~-~q~~---~Vh~--~~~--YD 152 (174)
T PF07931_consen 81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIGLAA-WQAE---HVHE--GGR--YD 152 (174)
T ss_dssp HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTHHH-HHTT---GGGT--T-----S
T ss_pred hCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchHHHH-HHHh---hccc--CCC--CC
Confidence 456 46777432 11 1111 1123 3467999999999999999842222111 1110 0011 011 26
Q ss_pred cEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 145 IVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 145 ~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
..+||+..|++|. ++.|++.+
T Consensus 153 leVDTs~~sp~ec---A~~I~~~~ 173 (174)
T PF07931_consen 153 LEVDTSATSPEEC---AREILARL 173 (174)
T ss_dssp EEEETTSS-HHHH---HHHHHTT-
T ss_pred EEEECCCCCHHHH---HHHHHHHh
Confidence 8999999999999 55555443
No 93
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.46 E-value=3.6e-12 Score=91.20 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+++.|+|.|++||||||+++.|++.++
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999873
No 94
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.45 E-value=4.2e-13 Score=93.94 Aligned_cols=150 Identities=12% Similarity=0.095 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcchhHH---HHHHHHHH-hc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDEDKL---LDELEPRV-QG 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~ 76 (172)
++..+|+|+|+|||||||+++.|++.+.. +.+++.|.+..... ... .+. ..+.... +..+...+ ..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~--~~~--~~~--~~~r~~~~~~~~~~a~~~~~~ 75 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS--KGL--GFS--KEDRDTNIRRIGFVANLLTRH 75 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh--cCC--CCC--hhhHHHHHHHHHHHHHHHHhC
Confidence 46779999999999999999999988721 45677776643321 000 000 0001111 11222322 23
Q ss_pred CCc-EEeecccc-----cCCc-CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc---CCcE
Q psy6661 77 GGK-IIDYHSAE-----MFPE-RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK---EDIV 146 (172)
Q Consensus 77 ~~~-ii~~~~~~-----~~~~-~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 146 (172)
|.+ +++...+. .+.. ...-.+|||+||++++.+|. .|+ .+.... .+.+..++..+.+.|. ++..
T Consensus 76 g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~-~~~----l~~~~~-~~~i~~~~~~~~~~~~p~~ad~~ 149 (175)
T PRK00889 76 GVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD-VKG----LYAKAR-AGEIKHFTGIDDPYEPPLNPEVE 149 (175)
T ss_pred CCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC-ccc----HHHHHH-cCCCCCCcccCCCCCCCCCCcEE
Confidence 433 33432211 0111 11124689999999999995 211 000000 0001122223333332 4678
Q ss_pred EeCCCCChhhHHHHHHHHHHHHH
Q psy6661 147 VSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 147 i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
+++++.+++++ +++|+.++.
T Consensus 150 i~~~~~~~~~~---~~~i~~~l~ 169 (175)
T PRK00889 150 CRTDLESLEES---VDKVLQKLE 169 (175)
T ss_pred EECCCCCHHHH---HHHHHHHHH
Confidence 88888899888 777777765
No 95
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.44 E-value=5.1e-12 Score=106.33 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN 46 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~ 46 (172)
|+..+|.|.|||||||||+|+.|+++|+ +.+++++.+++..
T Consensus 32 m~~~~i~idG~~gsGKst~~~~la~~l~-~~~~~~g~~yRa~ 72 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRLG-AQCLNTGSFYRAF 72 (863)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHHHHHH
Confidence 4456899999999999999999999999 9999988887654
No 96
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.44 E-value=3.1e-12 Score=91.07 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=70.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCce---EEehhhHHhhccc--cccc-ccccCCC-CcchhHHHHHHHHHHhcC--
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLE---WIDVNKIARENQF--YLKY-DEQYECP-ELDEDKLLDELEPRVQGG-- 77 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~---~i~~d~~~~~~~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-- 77 (172)
..+|.|+|+|||||||+|+.|.+.|+ .. .++.|++...... +... .-.+..+ .+|.+.+.+.+..+...+
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~-~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v 86 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLG-VEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPV 86 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhC-cCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCcc
Confidence 46899999999999999999999998 54 8888999775421 1111 1122221 346667777776544211
Q ss_pred -----------------------CcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 78 -----------------------GKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 78 -----------------------~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
-+|++|.....-+ +...++.||++++.++++.|...|.
T Consensus 87 ~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD 149 (218)
T COG0572 87 DLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRD 149 (218)
T ss_pred cccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHH
Confidence 1334443321111 2456889999999999988887664
No 97
>PLN02842 nucleotide kinase
Probab=99.44 E-value=2.8e-12 Score=101.74 Aligned_cols=104 Identities=20% Similarity=0.322 Sum_probs=67.1
Q ss_pred EEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-cccccccccc----C-CCCcchhHHHHHHHHHHh-----cCCc
Q psy6661 11 LITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-QFYLKYDEQY----E-CPELDEDKLLDELEPRVQ-----GGGK 79 (172)
Q Consensus 11 ~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~-----~~~~ 79 (172)
+|.|+|||||||+|+.|+++++ +.+++.+++++.. ..-...+... . ....+...+...+.+.+. ..++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg-~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG-LVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC-CCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcE
Confidence 4899999999999999999999 9999999887653 0000001100 0 011223344444444332 2468
Q ss_pred EEeeccccc-----CCc--CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 80 IIDYHSAEM-----FPE--RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 80 ii~~~~~~~-----~~~--~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
|+|+..... +.. ..++.+|+|+++++++++|+..|.
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 888743221 111 246899999999999999998874
No 98
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.43 E-value=4.5e-12 Score=87.67 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceE-Ee--------------------hhhHHh--hcccccccccccCCCCcc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEW-ID--------------------VNKIAR--ENQFYLKYDEQYECPELD 62 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~-i~--------------------~d~~~~--~~~~~~~~~~~~~~~~~~ 62 (172)
+..+|+|+||||+||||+.+.|-+..+ +.+ ++ .+++-. +.+.|.++.+-+...+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyY-- 79 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYY-- 79 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcc--
Confidence 678999999999999999999998864 443 22 111111 0111222211111111
Q ss_pred hhHHHHHHHHHHhcC-CcEEe--ecccccCCcCCcCEE-EEEeC-ChHHHHHHHHhcCC
Q psy6661 63 EDKLLDELEPRVQGG-GKIID--YHSAEMFPERWIDQV-YVLSA-DNTTLYDRLVEKGQ 116 (172)
Q Consensus 63 ~~~~~~~~~~~~~~~-~~ii~--~~~~~~~~~~~~~~~-i~l~~-~~~~~~~Rl~~r~~ 116 (172)
......++..++.| .++++ ...........++.+ ||+.+ +.+.+.+|+..|+.
T Consensus 80 -GT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 80 -GTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred -cCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence 23445556666666 45544 333434444444554 67666 67788999999984
No 99
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.43 E-value=4.7e-12 Score=90.87 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.++..|+|+|||||||||+++.|.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35788999999999999999999864
No 100
>PRK06696 uridine kinase; Validated
Probab=99.43 E-value=3e-12 Score=92.95 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc---CCceEE--ehhhHHhhcccccc----cccccCCCCcchhHHHHHHHHHH-
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC---DSLEWI--DVNKIARENQFYLK----YDEQYECPELDEDKLLDELEPRV- 74 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i--~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 74 (172)
....+|.|.|+|||||||+|+.|++.+ | .+++ +.|++......... ....+....+|.+.+.+.+...+
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g-~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRG-RPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 357789999999999999999999998 5 5554 47887543211000 00011001122222222221111
Q ss_pred ---------------------------hcC-CcEEeecccccCC---cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 75 ---------------------------QGG-GKIIDYHSAEMFP---ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 75 ---------------------------~~~-~~ii~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..+ .+|+++.. ++. ...++.+|||+||.+++.+|+..|.
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~--l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd 168 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTF--LLRPELRDLWDYKIFLDTDFEVSRRRGAKRD 168 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHH--HhhhhHHhhCCEEEEEECCHHHHHHHHHHhh
Confidence 111 13344432 232 2346889999999999999999886
No 101
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.42 E-value=1.2e-11 Score=86.85 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+|+|+|+|||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999999875
No 102
>PRK12338 hypothetical protein; Provisional
Probab=99.41 E-value=1.4e-11 Score=92.91 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=34.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhh
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARE 45 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~ 45 (172)
|+++.+|+|+|+|||||||+|+.|++++| +.++..++.+++
T Consensus 1 m~~p~ii~i~G~sGsGKST~a~~la~~l~-~~~~~~tD~~r~ 41 (319)
T PRK12338 1 MRKPYVILIGSASGIGKSTIASELARTLN-IKHLIETDFIRE 41 (319)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHCC-CeEEccChHHHH
Confidence 45678999999999999999999999999 988855555544
No 103
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.41 E-value=7.6e-12 Score=90.63 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=31.6
Q ss_pred CcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHH
Q psy6661 93 WIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEAR 138 (172)
Q Consensus 93 ~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 138 (172)
.||++|||++|++++.+|+.+|+............+.+...|.+..
T Consensus 142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~ 187 (219)
T cd02030 142 PPHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTF 187 (219)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHH
Confidence 4799999999999999999999854322222222344666666664
No 104
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.40 E-value=8.7e-13 Score=90.01 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=61.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-cccccccCCCCcchhHHHHHH----HHHH-hcC-CcEE
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDEQYECPELDEDKLLDEL----EPRV-QGG-GKII 81 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~-~~ii 81 (172)
+|+|+|+|||||||+|+.|++.++ +.+++.|.+....... ...+...... +...++..+ ...+ ..+ ++|+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~-~~~i~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~vVi 77 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG-APFIDGDDLHPPANIAKMAAGIPLNDE--DRWPWLQALTDALLAKLASAGEGVVV 77 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC-CEEEeCcccccHHHHHHHHcCCCCCcc--chhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 489999999999999999999999 9999998886531100 0000000000 011122222 1222 233 5677
Q ss_pred eecccc-----cCCc---CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 82 DYHSAE-----MFPE---RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 82 ~~~~~~-----~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+..... .+.. ...-.+||+.||++++.+|+..|.
T Consensus 78 d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 78 ACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred EeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 653311 1111 112347899999999999999996
No 105
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.40 E-value=1.7e-11 Score=90.49 Aligned_cols=133 Identities=21% Similarity=0.299 Sum_probs=73.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhc-----CC--c
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQG-----GG--K 79 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~ 79 (172)
|.+|+|||.|||||||..+.|.. +| +.-+| .+.. .++..+.+.... .. +
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED-~G-y~cvD--NlP~--------------------~Ll~~l~~~~~~~~~~~~~~Ai 56 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALED-LG-YYCVD--NLPP--------------------SLLPQLIELLAQSNSKIEKVAI 56 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHh-cC-eeEEc--CCcH--------------------HHHHHHHHHHHhcCCCCceEEE
Confidence 57899999999999999999965 68 55554 2211 122222221110 01 2
Q ss_pred EEeecccccCC----------cCCc-CEEEEEeCChHHHHHHHHhcCCCCchhhhhh-chHHHHHHHHHHHhhcc--CCc
Q psy6661 80 IIDYHSAEMFP----------ERWI-DQVYVLSADNTTLYDRLVEKGQSGKKLQDNL-QCEIFQTILEEARDSYK--EDI 145 (172)
Q Consensus 80 ii~~~~~~~~~----------~~~~-~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 145 (172)
++|......+. +... -.++||+|+.+++.+|-..-.+ .+++.... ..+.+.. ..+.....+ ++.
T Consensus 57 ~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR-~HPL~~~~~~le~I~~-Er~~L~~lr~~Ad~ 134 (284)
T PF03668_consen 57 VIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRR-RHPLSSDGSLLEAIEK-ERELLEPLRERADL 134 (284)
T ss_pred EEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccC-CCCCCCCCCcHHHHHH-HHHHHHHHHHhCCE
Confidence 22322111110 1111 2478999999999999976432 33333211 1111111 112222222 679
Q ss_pred EEeCCCCChhhHHHHHHHHH
Q psy6661 146 VVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 146 ~i~~~~~~~~e~~~~i~~i~ 165 (172)
+|||+++++.++...+.+.+
T Consensus 135 vIDTs~l~~~~Lr~~i~~~~ 154 (284)
T PF03668_consen 135 VIDTSNLSVHQLRERIRERF 154 (284)
T ss_pred EEECCCCCHHHHHHHHHHHh
Confidence 99999999999966665544
No 106
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.40 E-value=9.5e-12 Score=88.73 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=60.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC--CceEEehhhHHhhccccc--cc-ccccCC-CCcchhHHHHHHHHHHhc------
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCD--SLEWIDVNKIARENQFYL--KY-DEQYEC-PELDEDKLLDELEPRVQG------ 76 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~--~~~~i~~d~~~~~~~~~~--~~-~~~~~~-~~~~~~~~~~~~~~~~~~------ 76 (172)
+|.|+|++||||||+++.|++.++ ...+++.|++........ .. ...+.. ..++.+.+.+.+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 589999999999999999999873 167888888764331100 00 001111 112233333333322110
Q ss_pred -------------------CCcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 77 -------------------GGKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 77 -------------------~~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..+|+++....... ...+|.+|||++|.+++++|...|.
T Consensus 81 ~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd 140 (198)
T cd02023 81 VYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERD 140 (198)
T ss_pred ccccccCcccCCceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHH
Confidence 11233332221111 2446889999999999888887764
No 107
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.39 E-value=3.2e-11 Score=85.67 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=25.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc---CCceEEe
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC---DSLEWID 38 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i~ 38 (172)
++|+|.|++||||||+++.|++++ | ..++.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g-~~v~~ 33 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARG-YEVVL 33 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEE
Confidence 479999999999999999999988 5 55443
No 108
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.39 E-value=1e-11 Score=88.33 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+++|+|.|++||||||+++.|+++++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999985
No 109
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.39 E-value=1.2e-11 Score=86.57 Aligned_cols=107 Identities=26% Similarity=0.382 Sum_probs=70.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-cccccccC-----CCCcchhHHHHHHHHHHhcC----
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDEQYE-----CPELDEDKLLDELEPRVQGG---- 77 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---- 77 (172)
++|+|.|+|||||||+|+.|+++++ +++++.+++.+....- ...+.... ..+.+.......+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence 3689999999999999999999999 9999999998765111 11111110 01222223334444444432
Q ss_pred CcEEeeccccc-----CC----c--CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 78 GKIIDYHSAEM-----FP----E--RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 78 ~~ii~~~~~~~-----~~----~--~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
++|+++....+ ++ . ...+.++.++++.+.+..|+..|.
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence 57777643221 11 1 245778999999999999999885
No 110
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.37 E-value=1.4e-11 Score=88.03 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC--ceEEe--------hhhHHhhccccc--ccccccCCCCc--c-hhHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS--LEWID--------VNKIARENQFYL--KYDEQYECPEL--D-EDKLLDE 69 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~--~~~i~--------~d~~~~~~~~~~--~~~~~~~~~~~--~-~~~~~~~ 69 (172)
++++.|.|.|+-||||||+++.|++.+.+ +.++- .++.+++.-+-. ...+......+ + .+.+...
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV 80 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998752 33331 122222211100 00000000000 0 0123333
Q ss_pred HHHHHhcCCcEEeecc-----c------c------------cCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhh-
Q psy6661 70 LEPRVQGGGKIIDYHS-----A------E------------MFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNL- 125 (172)
Q Consensus 70 ~~~~~~~~~~ii~~~~-----~------~------------~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~- 125 (172)
+.+.+..|.+|+...+ + . ....-.||.++||++|+++.++|+.+|+.....+....
T Consensus 81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~ 160 (208)
T COG0125 81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDD 160 (208)
T ss_pred HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence 3344444545442110 0 0 00012579999999999999999999974412221111
Q ss_pred -chHHHHHHHHHHHhhccC-CcEEeCCCCChhhHHHHHHHHHH
Q psy6661 126 -QCEIFQTILEEARDSYKE-DIVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
..+.+...|.+....+.. ..+|| .+.+++++.+.+.+++.
T Consensus 161 ~f~~kvr~~Y~~la~~~~~r~~vId-a~~~~e~v~~~i~~~l~ 202 (208)
T COG0125 161 EFLEKVREGYLELAAKFPERIIVID-ASRPLEEVHEEILKILK 202 (208)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEE-CCCCHHHHHHHHHHHHH
Confidence 123344445555544433 23444 45678888555544443
No 111
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.37 E-value=1.4e-11 Score=93.24 Aligned_cols=106 Identities=19% Similarity=0.133 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc-CCceEEehhhHHhhcccccccccccCCCCc-ch----hHHHHHHHHHHhcC-Cc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC-DSLEWIDVNKIARENQFYLKYDEQYECPEL-DE----DKLLDELEPRVQGG-GK 79 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~-~~ 79 (172)
+.+|+++|+|||||||+|+.|++++ + +.+++.|.+..........+. ..... .. ......+...+..| ++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~-~~~l~~D~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 78 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPK-AVNVNRDDLRQSLFGHGEWGE--YKFTKEKEDLVTKAQEAAALAALKSGKSV 78 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCC-CEEEeccHHHHHhcCCCcccc--cccChHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 3689999999999999999999999 7 999999887654211100000 00000 01 12223333444454 46
Q ss_pred EEeecccc-----c----CCcCCcCE-EEEEeCChHHHHHHHHhcC
Q psy6661 80 IIDYHSAE-----M----FPERWIDQ-VYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 80 ii~~~~~~-----~----~~~~~~~~-~i~l~~~~~~~~~Rl~~r~ 115 (172)
|++..... . ........ +|+|.+|.+++.+|+.+|+
T Consensus 79 Iid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~ 124 (300)
T PHA02530 79 IISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG 124 (300)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC
Confidence 77653211 0 11111233 5889999999999999995
No 112
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.36 E-value=4.4e-12 Score=93.60 Aligned_cols=102 Identities=26% Similarity=0.346 Sum_probs=59.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC--c--eEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcC-CcEEee
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDS--L--EWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGG-GKIIDY 83 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~--~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~ 83 (172)
.|+|+|+|||||||+|+.|+++++. . .+++.|.+......+ ........ .......+...+..+ .+|+|+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~---~~~~e~~~--~~~~~~~i~~~l~~~~~VI~D~ 75 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVW---KEKYEEFI--RDSTLYLIKTALKNKYSVIVDD 75 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHh---hHHhHHHH--HHHHHHHHHHHHhCCCeEEEec
Confidence 4899999999999999999988731 3 344555443321111 11110000 122333445555555 456665
Q ss_pred cccc------cC---Cc-CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 84 HSAE------MF---PE-RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 84 ~~~~------~~---~~-~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.... ++ .. .....+||+++|.+++.+|...|+
T Consensus 76 ~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 76 TNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred cchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC
Confidence 3211 11 11 112357899999999999999886
No 113
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.36 E-value=2.1e-11 Score=85.42 Aligned_cols=108 Identities=14% Similarity=0.176 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---cccccccccCCCCcchhHHHHHHH-HHHh--cCCc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---FYLKYDEQYECPELDEDKLLDELE-PRVQ--GGGK 79 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~ 79 (172)
...+++|.|++||||||+++.|+..++ ..+++.|.+..... .....+....... .....+.... .... .+++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ 79 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-AKFIDGDDLHPAKNIDKMSQGIPLTDEDRL-PWLERLNDASYSLYKKNETGF 79 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-CEEECCcccCCHhHHHHHhcCCCCCcccch-HHHHHHHHHHHHHHhcCCCEE
Confidence 346899999999999999999999999 88898887633210 0000000000100 0111111111 1112 3455
Q ss_pred EEeeccc----ccCCcCCcC-EEEEEeCChHHHHHHHHhcC
Q psy6661 80 IIDYHSA----EMFPERWID-QVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 80 ii~~~~~----~~~~~~~~~-~~i~l~~~~~~~~~Rl~~r~ 115 (172)
|+..... .++...... ..|||+|+++++.+|+.+|.
T Consensus 80 iv~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~ 120 (176)
T PRK09825 80 IVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRA 120 (176)
T ss_pred EEEEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhccc
Confidence 5533221 122222222 46899999999999999997
No 114
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.35 E-value=2e-11 Score=87.75 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC--CceEEehhhHHhhcc---cccccccccCC-CCcchhHHHHHHHHHHhc--
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD--SLEWIDVNKIARENQ---FYLKYDEQYEC-PELDEDKLLDELEPRVQG-- 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~~i~~d~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 76 (172)
.+..+|.|+|++||||||+++.|+..++ ++.+++.|++..... .....+..+.. ..++...+.+.+..+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~ 83 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSP 83 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCC
Confidence 4567899999999999999999998875 256777777643210 00000011111 112233344444332211
Q ss_pred -----------------------CCcEEeecccccCC---cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 77 -----------------------GGKIIDYHSAEMFP---ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 77 -----------------------~~~ii~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.-+|+++.... ++ ...++.+|||+++.+++++|+..|.
T Consensus 84 v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~-~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~ 147 (207)
T TIGR00235 84 IDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPL-FDERLRDLMDLKIFVDTPLDIRLIRRIERD 147 (207)
T ss_pred EecccceeecCCCCCceEEeCCCCEEEEEehhhh-chHhHHHhCCEEEEEECChhHHHHHHHHHH
Confidence 11334443221 21 2346889999999999999998874
No 115
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.35 E-value=5.7e-12 Score=88.89 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCc-
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGK- 79 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (172)
+++.+|+|+|+|||||||+++.|+..+.. ..+++.|.+.... ....+-...........+..........|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~V 93 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGL--NKDLGFSEEDRKENIRRIGEVAKLFVRNGIIV 93 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhh--ccccCCCHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 45689999999999999999999988621 3456666654321 1100000000000001122222233445644
Q ss_pred EEeeccccc-----CC---cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhc---cCCcEEe
Q psy6661 80 IIDYHSAEM-----FP---ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY---KEDIVVS 148 (172)
Q Consensus 80 ii~~~~~~~-----~~---~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~ 148 (172)
|++...+.. +. +...-.+||++||.+++.+|...+ .+.. ...+.+..+.......+ .++++|+
T Consensus 94 I~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~-----l~~~-~~~~~~~~l~~~~~~y~~p~~adl~Id 167 (184)
T TIGR00455 94 ITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKG-----LYKK-ARNGEIKGFTGIDSPYEAPENPEVVLD 167 (184)
T ss_pred EEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchh-----HHHH-HhcCCccCcccccCCCCCCCCCcEEEE
Confidence 444432111 10 111224689999999999993211 0100 00000111111111111 2468899
Q ss_pred CCCCChhhHHHHHHHHHHH
Q psy6661 149 LPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 149 ~~~~~~~e~~~~i~~i~~~ 167 (172)
+++.+++++ +++|+++
T Consensus 168 t~~~~~~~~---~~~i~~~ 183 (184)
T TIGR00455 168 TDQNDREEC---VGQIIEK 183 (184)
T ss_pred CCCCCHHHH---HHHHHHh
Confidence 888898888 7776654
No 116
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.34 E-value=3.8e-12 Score=89.26 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC--ceEEehhh-HHhh---cccccccccccCCCCcchhHHHHHHHHHHhcCCcE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS--LEWIDVNK-IARE---NQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKI 80 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~--~~~i~~d~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (172)
|+.|+++|.|||||||+|+.|++.|.+ ...++... +..- ...++...+.+... ++ ......+...+..--+|
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres-~~-ks~~rlldSalkn~~VI 78 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRES-FL-KSVERLLDSALKNYLVI 78 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHH-HH-HHHHHHHHHHhcceEEE
Confidence 578999999999999999999998852 33333222 1110 00111000111000 00 11112222223323355
Q ss_pred Eeeccc-ccCC---------cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHH
Q psy6661 81 IDYHSA-EMFP---------ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEAR 138 (172)
Q Consensus 81 i~~~~~-~~~~---------~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 138 (172)
+|.... .-++ ..-.--+||+.||++++.+|..+|+ .++.. +.++.+|....
T Consensus 79 vDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg---epip~----Evl~qly~RfE 139 (261)
T COG4088 79 VDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG---EPIPE----EVLRQLYDRFE 139 (261)
T ss_pred EecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC---CCCCH----HHHHHHHHhhc
Confidence 654321 1111 1222348999999999999998887 44333 33555555433
No 117
>PRK07667 uridine kinase; Provisional
Probab=99.34 E-value=1.2e-11 Score=87.95 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhccc-ccccccccCC---CCcchhHHHHHHHHHHhcC-
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQF-YLKYDEQYEC---PELDEDKLLDELEPRVQGG- 77 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~- 77 (172)
..+|.|+|+|||||||+++.|++.+++ ..+++.|++...... +.....++.. .-+|...+...+-..+..+
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~~ 96 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNET 96 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCCC
Confidence 468999999999999999999997631 458888887654311 0000011100 0012222222221111111
Q ss_pred -------------------------CcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 78 -------------------------GKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 78 -------------------------~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
-+|+++.. ++.. ..+|.+|||+||++++.+|+.+|.
T Consensus 97 ~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~--l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~ 160 (193)
T PRK07667 97 KLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVF--LQRKEWRDFFHYMVYLDCPRETRFLRESEET 160 (193)
T ss_pred eEEEeeeccccccccccceecCCCCEEEEEehh--hhhhhHHhhceEEEEEECCHHHHHHHHhccc
Confidence 12334432 2332 456889999999999999999875
No 118
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.34 E-value=5.2e-12 Score=86.33 Aligned_cols=100 Identities=26% Similarity=0.350 Sum_probs=63.6
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-ccccccc------cCCCCcchhHHHHHHHHHHh----cCCcE
Q psy6661 12 ITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDEQ------YECPELDEDKLLDELEPRVQ----GGGKI 80 (172)
Q Consensus 12 l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~i 80 (172)
|.|+|||||||+|+.|++++| +.+++.+++++..-. -...+.. ....+ ..+.+.+.+...+. ..++|
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~v-p~~~v~~ll~~~l~~~~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-LVHISVGDLLREEIKSDSELGKQIQEYLDNGELV-PDELVIELLKERLEQPPCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS---HHHHHHHHHHHHHSGGTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcC-cceechHHHHHHHHhhhhHHHHHHHHHHHhhccc-hHHHHHHHHHHHHhhhcccceee
Confidence 689999999999999999999 999999999876410 0000111 11122 22344444443332 24688
Q ss_pred Eeeccccc-----CC------cCCcCEEEEEeCChHHHHHHHHh
Q psy6661 81 IDYHSAEM-----FP------ERWIDQVYVLSADNTTLYDRLVE 113 (172)
Q Consensus 81 i~~~~~~~-----~~------~~~~~~~i~l~~~~~~~~~Rl~~ 113 (172)
+|+..... +. ...++.+|+|+||.+++.+|+..
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 88754321 11 24467899999999999999988
No 119
>KOG3877|consensus
Probab=99.33 E-value=2.3e-11 Score=88.82 Aligned_cols=159 Identities=16% Similarity=0.279 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE---ehhhHHhhc------ccccccccccC-------------------
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWI---DVNKIAREN------QFYLKYDEQYE------------------- 57 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i---~~d~~~~~~------~~~~~~~~~~~------------------- 57 (172)
+.++|++.|+.|||||++|+.||++|| +.++ +.|.+..+. ++...+.....
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lg-f~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~ 148 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLG-FVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM 148 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhC-CcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence 578999999999999999999999999 7765 344443322 11221111111
Q ss_pred -CCCc--chhHHHHHHHHHHhcC-CcEEeecc-c------ccCC----------------------cCCcCEEEEEeCCh
Q psy6661 58 -CPEL--DEDKLLDELEPRVQGG-GKIIDYHS-A------EMFP----------------------ERWIDQVYVLSADN 104 (172)
Q Consensus 58 -~~~~--~~~~~~~~~~~~~~~~-~~ii~~~~-~------~~~~----------------------~~~~~~~i~l~~~~ 104 (172)
..++ .....++.++.++..| |+|++-.. . .++. --+|.++|||+.|.
T Consensus 149 Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv 228 (393)
T KOG3877|consen 149 QDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPV 228 (393)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCc
Confidence 0000 1134666667777776 67764210 0 0000 04567899999999
Q ss_pred HHHHHHHHhcCCCCch-hhhhhchHHHHHHHHHH-Hhhcc-CCcEEeCCCCChhhHHHHHHHHH
Q psy6661 105 TTLYDRLVEKGQSGKK-LQDNLQCEIFQTILEEA-RDSYK-EDIVVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 105 ~~~~~Rl~~r~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~e~~~~i~~i~ 165 (172)
..+++|++.|+...+- +.++.....++..|... +..+. .+-++.-+...+.+.+..|++|.
T Consensus 229 ~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIE 292 (393)
T KOG3877|consen 229 NKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIE 292 (393)
T ss_pred HHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhh
Confidence 9999999999854322 22223333344444443 33333 34444444444445444455554
No 120
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.31 E-value=7.7e-11 Score=84.41 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=26.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
|++..+|+|.|+|||||||+++.|++.++
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45678999999999999999999999875
No 121
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.31 E-value=1.6e-11 Score=87.36 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=60.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC--c------eEEehhhHHhhcccccccc-----cccCC-CCcchhHHHHHHHHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDS--L------EWIDVNKIARENQFYLKYD-----EQYEC-PELDEDKLLDELEPRV 74 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~--~------~~i~~d~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~ 74 (172)
+|.|+|+|||||||+|+.|++.|++ . .++..|.+..........+ ..+.. ..+|.+.+.+.+..+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 5899999999999999999999863 2 2555666643321110000 01111 1234455555555432
Q ss_pred hcC-------------------------CcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 75 QGG-------------------------GKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 75 ~~~-------------------------~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..+ -+|++|.+....+ +..+|+.|||+++.++++.|...|.
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD 148 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRD 148 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHH
T ss_pred CCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhh
Confidence 211 1233443322211 3556899999999999888877664
No 122
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.29 E-value=1.6e-10 Score=82.19 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=34.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN 46 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~ 46 (172)
++.+|+|+|+|||||||+|+.|+++++ +.++...+++++.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~-~~~~~~~D~~r~~ 41 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRA-IDIVLSGDYLREF 41 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-CeEEehhHHHHHH
Confidence 457999999999999999999999999 9887776666544
No 123
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.29 E-value=2.2e-12 Score=87.85 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCC-cEE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGG-KII 81 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ii 81 (172)
+.+|+|+|.|||||||+|++|.++|.+ ..+++.|.+.... ....+-+..... ..-.-+..+...+...| ++|
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l--~~dl~fs~~dR~-e~~rr~~~~A~ll~~~G~ivI 78 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL--NADLGFSKEDRE-ENIRRIAEVAKLLADQGIIVI 78 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT--TTT--SSHHHHH-HHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc--CCCCCCCHHHHH-HHHHHHHHHHHHHHhCCCeEE
Confidence 468999999999999999999998721 4467777775432 111110000000 00122333344555444 333
Q ss_pred -eecccc-----cCCcCCc---CEEEEEeCChHHHHHHHHh
Q psy6661 82 -DYHSAE-----MFPERWI---DQVYVLSADNTTLYDRLVE 113 (172)
Q Consensus 82 -~~~~~~-----~~~~~~~---~~~i~l~~~~~~~~~Rl~~ 113 (172)
....+. ..+...+ -+.|||+||.+++.+|-.+
T Consensus 79 va~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~K 119 (156)
T PF01583_consen 79 VAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPK 119 (156)
T ss_dssp EE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTT
T ss_pred EeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCch
Confidence 222111 1111112 2459999999999999643
No 124
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.28 E-value=7.7e-11 Score=81.59 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=55.4
Q ss_pred EcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccc-ccccccCCCCcchhHHHHHHHHH----Hhc-CC-cEEeecc
Q psy6661 13 TGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL-KYDEQYECPELDEDKLLDELEPR----VQG-GG-KIIDYHS 85 (172)
Q Consensus 13 ~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-~ii~~~~ 85 (172)
.|+|||||||+++.|+++++ ..+++.|.+........ ..+..+... +...+...+.+. ... +. +++....
T Consensus 1 ~G~sGsGKSTla~~la~~l~-~~~~~~d~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~viv~s~~ 77 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH-AAFLDGDFLHPRRNIEKMASGEPLNDD--DRKPWLQALNDAAFAMQRTNKVSLIVCSAL 77 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC-CeEEeCccCCchhhhccccCCCCCChh--hHHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 49999999999999999999 99999876532111000 001111000 011122222211 112 32 2332211
Q ss_pred c----ccCCcCCcC-EEEEEeCChHHHHHHHHhcCC
Q psy6661 86 A----EMFPERWID-QVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 86 ~----~~~~~~~~~-~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
. ..+...... ..||++||++++.+|+..|..
T Consensus 78 ~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~ 113 (163)
T PRK11545 78 KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKG 113 (163)
T ss_pred hHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccC
Confidence 1 112222233 458999999999999999973
No 125
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.25 E-value=8.5e-11 Score=83.45 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=25.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+|.|.|++||||||+++.|+++++ +.++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~-~~~~~ 29 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG-YEVVP 29 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-Ccccc
Confidence 489999999999999999999888 76553
No 126
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.24 E-value=2.4e-10 Score=80.24 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+|+|.||+||||||+++.|++.++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 6899999999999999999998765
No 127
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.23 E-value=1.9e-11 Score=101.01 Aligned_cols=147 Identities=11% Similarity=0.148 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcch--h----HHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDE--D----KLLDELEPRV 74 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~ 74 (172)
+++.+|+++|.|||||||+|+.|++++.. +.+++.|.+.... +... .+-++ . .+........
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l--~~~~------~~~~~~r~~~~~~l~~~a~~~~ 529 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL--NRDL------GFSDADRVENIRRVAEVARLMA 529 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc--CCCC------CCCHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999731 4678887775432 1100 01111 1 1212112223
Q ss_pred hcCC-cEEeecccc-----cCCc---CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc---
Q psy6661 75 QGGG-KIIDYHSAE-----MFPE---RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--- 142 (172)
Q Consensus 75 ~~~~-~ii~~~~~~-----~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (172)
..|. ++++..... .+.. ...-.+|||+++.+++.+|. .|+ .+.. ...+.+..++..+.. |.
T Consensus 530 ~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r~----L~~~-~~~~~l~~l~~~r~~-y~~P~ 602 (632)
T PRK05506 530 DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PKG----LYAK-ARAGEIKNFTGIDSP-YEAPE 602 (632)
T ss_pred hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Ccc----hhhh-ccccccccccccccC-CCCCC
Confidence 3443 344432211 1111 11125689999999999994 222 1111 001112222222222 22
Q ss_pred -CCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 143 -EDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 143 -~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
++++|++++.+++++ +++|++++.
T Consensus 603 ~a~~~Id~~~~s~~e~---v~~Ii~~l~ 627 (632)
T PRK05506 603 NPELRLDTTGRSPEEL---AEQVLELLR 627 (632)
T ss_pred CCeEEEeCCCCCHHHH---HHHHHHHHH
Confidence 457888888899999 777777775
No 128
>PLN02924 thymidylate kinase
Probab=99.21 E-value=3e-10 Score=82.16 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+++++|.|.|+.||||||+++.|++.+.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999986
No 129
>PLN02348 phosphoribulokinase
Probab=99.21 E-value=1.4e-10 Score=89.38 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC-------------------ceEEehhhHHhhc-ccccccccccCC-CCcchh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS-------------------LEWIDVNKIAREN-QFYLKYDEQYEC-PELDED 64 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~-------------------~~~i~~d~~~~~~-~~~~~~~~~~~~-~~~~~~ 64 (172)
+..+|.|+|+|||||||+++.|++.|+. ..+++.|++.... ......+..... ...+.+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~dfD 127 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFD 127 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccHH
Confidence 4678999999999999999999999862 2367888875321 100000100111 112334
Q ss_pred HHHHHHHHHHhc-----------------------C-CcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 65 KLLDELEPRVQG-----------------------G-GKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 65 ~~~~~~~~~~~~-----------------------~-~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.+.+.+..+... . -+|+++.....-+ +..+|..|||+++++++..|..+|.
T Consensus 128 ll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI~RD 204 (395)
T PLN02348 128 LMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQRD 204 (395)
T ss_pred HHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHHHhh
Confidence 455555433211 1 1344553332211 3557899999999999877666664
No 130
>PRK13974 thymidylate kinase; Provisional
Probab=99.20 E-value=7.1e-10 Score=79.97 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++.+|.|.|++||||||+++.|++.+.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999875
No 131
>PHA00729 NTP-binding motif containing protein
Probab=99.20 E-value=4e-11 Score=86.25 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceE--EehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcC---C-c
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEW--IDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGG---G-K 79 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~--i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 79 (172)
....|+|+|+||+||||+|..|+++++ ..+ +..+...+ .......+++.+.+++.+....... . .
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~-~~l~~l~~~~~~~--------d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlL 86 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF-WKLNNLSTKDDAW--------QYVQNSYFFELPDALEKIQDAIDNDYRIPLI 86 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH-hhcccccchhhHH--------hcCCcEEEEEHHHHHHHHHHHHhcCCCCCEE
Confidence 345799999999999999999999875 332 22222221 1222233445667777776554331 2 4
Q ss_pred EEeecccccCC------------------cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhh
Q psy6661 80 IIDYHSAEMFP------------------ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDN 124 (172)
Q Consensus 80 ii~~~~~~~~~------------------~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~ 124 (172)
|+|........ ....+.+++..++++.+.+|+..|++....+.++
T Consensus 87 IIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~~~kI~en 149 (226)
T PHA00729 87 IFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWYQIRVTMV 149 (226)
T ss_pred EEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCcHHHhhhc
Confidence 77762111111 1235778999999999999999999876666554
No 132
>PRK07429 phosphoribulokinase; Provisional
Probab=99.19 E-value=2.7e-10 Score=86.87 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=34.1
Q ss_pred CCCCC-CCCeEEEEcCCCCCHHHHHHHHHHHcCC--ceEEehhhHH
Q psy6661 1 MSSKR-TKPNILITGTPGTGKSTLCEEVVKQCDS--LEWIDVNKIA 43 (172)
Q Consensus 1 m~~~~-~~~~I~l~G~~GsGKsT~a~~L~~~l~~--~~~i~~d~~~ 43 (172)
|.+++ +..+|.|+|++||||||+++.|++.++. ..+++.|++.
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 55544 4668999999999999999999998762 3467777764
No 133
>PRK07933 thymidylate kinase; Validated
Probab=99.19 E-value=8.3e-10 Score=79.62 Aligned_cols=71 Identities=8% Similarity=0.019 Sum_probs=40.8
Q ss_pred CcCEEEEEeCChHHHHHHHHhcCCCC-----chhhhh-hchHHHHHHHHHHHhhc-cCCcEEeCCCCChhhHHHHHHH
Q psy6661 93 WIDQVYVLSADNTTLYDRLVEKGQSG-----KKLQDN-LQCEIFQTILEEARDSY-KEDIVVSLPSNTHDDMSSNVTS 163 (172)
Q Consensus 93 ~~~~~i~l~~~~~~~~~Rl~~r~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~e~~~~i~~ 163 (172)
.||++|||++|+++..+|+.+|+... ...... ...+.+...|.+....+ ...+++...+.+++++.++|.+
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~ 209 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAA 209 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHH
Confidence 58999999999999999999986321 111111 11123444454444432 2223332346788888555544
No 134
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.19 E-value=2.8e-10 Score=82.98 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceE-EehhhHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS----LEW-IDVNKIA 43 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~-i~~d~~~ 43 (172)
.+..+|+|.|++||||||+++.|++.+.. ..+ ++.|++.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 34678999999999999999999988752 123 6666653
No 135
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1e-09 Score=74.27 Aligned_cols=108 Identities=18% Similarity=0.309 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCc---eEEehhhHHhhc-------------cccc------ccccccCCCCcch
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSL---EWIDVNKIAREN-------------QFYL------KYDEQYECPELDE 63 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~---~~i~~d~~~~~~-------------~~~~------~~~~~~~~~~~~~ 63 (172)
+...|++.||||+||-|+..++..++..- .|+. .++.+. .-|. .+.-.|+.+-+ -
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvr--RvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL-~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVR--RVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGL-S 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEE--EEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCc-c
Confidence 46789999999999999999999988632 2221 111110 0000 00111111100 1
Q ss_pred hHHHHHHHHHHhcCCcEE-eecccccCC--cCCcC-EEEEEeCChHHHHHHHHhcCC
Q psy6661 64 DKLLDELEPRVQGGGKII-DYHSAEMFP--ERWID-QVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 64 ~~~~~~~~~~~~~~~~ii-~~~~~~~~~--~~~~~-~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
..+-..+...+..|.+++ ++....+-. +..+. .++.|.++|+++.+||.+|++
T Consensus 81 Ygip~eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGR 137 (192)
T COG3709 81 YGIPAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGR 137 (192)
T ss_pred ccCchhHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhcc
Confidence 346667777888886544 443322211 22223 468899999999999999995
No 136
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.17 E-value=4.6e-10 Score=79.09 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++.|+|+||+||||||+++.|.+.++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999998876
No 137
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.17 E-value=1.9e-10 Score=83.32 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=29.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC------CceEEehhhHHh
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCD------SLEWIDVNKIAR 44 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~------~~~~i~~d~~~~ 44 (172)
+|.|+|++||||||+++.|++.+. .+.+++.|++..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence 488999999999999999999873 145677777743
No 138
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.17 E-value=7.5e-11 Score=83.28 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=37.3
Q ss_pred CcCEEEEEeCChHHHHHHHHhcCCCCc-hhhhhhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHH
Q psy6661 93 WIDQVYVLSADNTTLYDRLVEKGQSGK-KLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSS 159 (172)
Q Consensus 93 ~~~~~i~l~~~~~~~~~Rl~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~ 159 (172)
.||++|||+++|++..+|+..|+.... ..........+...|.+... .....++...+.+++++.+
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~iid~~~~~e~v~~ 184 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELAK-DPNNWVIIDASRSIEEVHE 184 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHHH-TTTTEEEEETTS-HHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHc-CCCCEEEEECCCCHHHHHh
Confidence 689999999999999999999985111 11111112223344444443 2233444334667888743
No 139
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.16 E-value=2.1e-09 Score=75.85 Aligned_cols=25 Identities=32% Similarity=0.674 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.|+|.|||||||+|+++.|.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999999886
No 140
>PRK13976 thymidylate kinase; Provisional
Probab=99.16 E-value=1.2e-09 Score=78.58 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=42.3
Q ss_pred CcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccC-CcEEeCC--CCC---hhhHHHHHHHHHH
Q psy6661 93 WIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKE-DIVVSLP--SNT---HDDMSSNVTSIIQ 166 (172)
Q Consensus 93 ~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~--~~~---~~e~~~~i~~i~~ 166 (172)
.||++|||++|+++..+|+..++.... .....+.+...|.+....+.. ..+++.+ +.+ ++++.++|..++.
T Consensus 124 ~PDl~i~Ldv~~e~a~~Ri~~~~~e~~---~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~ 200 (209)
T PRK13976 124 YPDITFVLDIDIELSLSRADKNGYEFM---DLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLH 200 (209)
T ss_pred CCCEEEEEeCCHHHHHHHhcccchhcc---cHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHH
Confidence 489999999999999999965542211 111122344555555544432 3445542 234 7888666666554
Q ss_pred H
Q psy6661 167 F 167 (172)
Q Consensus 167 ~ 167 (172)
.
T Consensus 201 ~ 201 (209)
T PRK13976 201 A 201 (209)
T ss_pred H
Confidence 3
No 141
>PRK05439 pantothenate kinase; Provisional
Probab=99.13 E-value=4.5e-10 Score=84.80 Aligned_cols=111 Identities=17% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC------ceEEehhhHHhhccccccccc--ccC-CCCcchhHHHHHHHHHHh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS------LEWIDVNKIARENQFYLKYDE--QYE-CPELDEDKLLDELEPRVQ 75 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~------~~~i~~d~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~ 75 (172)
....+|+|+|+|||||||+|+.|++.++. ..+++.|++..........+. .+. ...+|...+.+.+..+.+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~ 163 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKS 163 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHc
Confidence 45678999999999999999999986642 457888888654311111000 000 012344555555544332
Q ss_pred cCC---------------------------cEEeecccccCC--------cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 76 GGG---------------------------KIIDYHSAEMFP--------ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 76 ~~~---------------------------~ii~~~~~~~~~--------~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
... +|++|......+ ...+|+.|||+++.+.+.+|+.+|.
T Consensus 164 G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~ 238 (311)
T PRK05439 164 GKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERF 238 (311)
T ss_pred CCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 110 223332211111 3456889999999999888777664
No 142
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.09 E-value=9e-10 Score=77.37 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=61.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC----CceEEehhhHHhhcccccccccccC-CCCcchhHHHHHHHHHHhc-------
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCD----SLEWIDVNKIARENQFYLKYDEQYE-CPELDEDKLLDELEPRVQG------- 76 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~----~~~~i~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------- 76 (172)
+|+|+|+|||||||+|+.|++.++ +...++.|++.............+. ...+|.+.+.+.+..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 589999999999999999999862 1678899999864300000000000 1123445555555443211
Q ss_pred ------------------CC-cEEeecccccCC--cCCcCEEEEEeCChHH-HHHHHHhcC
Q psy6661 77 ------------------GG-KIIDYHSAEMFP--ERWIDQVYVLSADNTT-LYDRLVEKG 115 (172)
Q Consensus 77 ------------------~~-~ii~~~~~~~~~--~~~~~~~i~l~~~~~~-~~~Rl~~r~ 115 (172)
.. +|++|.... .+ +...+..||++++.+. ++.|-..|.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l-~~~l~~~~d~~I~vd~~~~~~rl~rri~RD 140 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYAL-NERLRSLLDIRVAVSGGVHLNRLLRRVVRD 140 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhc-CHhHHhhcCEEEEEeCCccHHHHHHHHHHh
Confidence 11 233442221 11 2346889999999998 665555443
No 143
>KOG0635|consensus
Probab=99.08 E-value=3.8e-10 Score=75.48 Aligned_cols=104 Identities=21% Similarity=0.198 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCC---ce-EEehhhHHhhcccccccc-cccCCCCcchhHHHHHHHHHHhcCC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDS---LE-WIDVNKIARENQFYLKYD-EQYECPELDEDKLLDELEPRVQGGG 78 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~---~~-~i~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
.++..+|+|||.|||||||+|-+|.+.|-+ .. .++.|.+....+--..+. ++...++ .-+.++..+++..+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENI----RRigeVaKLFADag 103 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENI----RRIGEVAKLFADAG 103 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhH----HHHHHHHHHHhccc
Confidence 356889999999999999999999887642 22 356666654321111111 1111111 23444556666666
Q ss_pred cEEeecc--c---------ccCCcCCcCEE-EEEeCChHHHHHHHHh
Q psy6661 79 KIIDYHS--A---------EMFPERWIDQV-YVLSADNTTLYDRLVE 113 (172)
Q Consensus 79 ~ii~~~~--~---------~~~~~~~~~~~-i~l~~~~~~~~~Rl~~ 113 (172)
+|..... | .+.+ . .+++ ||+++|.+++.+|--+
T Consensus 104 ~iciaSlISPYR~dRdacRel~~-~-~~FiEvfmdvpl~vcE~RDPK 148 (207)
T KOG0635|consen 104 VICIASLISPYRKDRDACRELLP-E-GDFIEVFMDVPLEVCEARDPK 148 (207)
T ss_pred eeeeehhcCchhccHHHHHHhcc-C-CCeEEEEecCcHHHhhccCch
Confidence 5442211 1 1122 2 2555 8999999999988644
No 144
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=8e-09 Score=74.76 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhh
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARE 45 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~ 45 (172)
|+++.+|+|-|+||+||||+|..||.+|| +..+-..+.+++
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLg-I~~visTD~IRE 126 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLG-IRSVISTDSIRE 126 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcC-CceeecchHHHH
Confidence 56688999999999999999999999999 875544444443
No 145
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.07 E-value=8e-10 Score=82.84 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC------CceEEehhhHHh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD------SLEWIDVNKIAR 44 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~------~~~~i~~d~~~~ 44 (172)
..+.+|+|.|++||||||+++.|+..+. .+.+++.|.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 4567899999999999999998876653 144567777654
No 146
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.07 E-value=6.7e-10 Score=82.64 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=55.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCc-EE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGK-II 81 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii 81 (172)
|+.|+|+|.|||||||+|+.|++.+.+ ..+++.+.+......+.....+ ... ...+.+.+.+.++.+.+ |+
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~E--k~~--R~~l~s~v~r~ls~~~iVI~ 76 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKE--KEA--RGSLKSAVERALSKDTIVIL 76 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGH--HHH--HHHHHHHHHHHHTT-SEEEE
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhh--HHH--HHHHHHHHHHhhccCeEEEE
Confidence 578999999999999999999987531 3455544444222111100000 000 23466666777776654 45
Q ss_pred eecccc------cC---Cc-CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 82 DYHSAE------MF---PE-RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 82 ~~~~~~------~~---~~-~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
|+.... ++ +. ...--+||+.|+.+.+.+|-..|.
T Consensus 77 Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 77 DDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp -S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred eCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 543211 11 11 112346999999999999999997
No 147
>COG0645 Predicted kinase [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=74.85 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=68.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccc-cccCCCCcc-----hhHHHHHHHHHHhcC-CcE
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYD-EQYECPELD-----EDKLLDELEPRVQGG-GKI 80 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~-~~i 80 (172)
..+++.|.|||||||+++.|++.+| ...+..|.+.+...-.+... .....+... .+.+...-...+..| ++|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg-A~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV 80 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG-AIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVV 80 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC-ceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 4688999999999999999999999 99999999877641111110 011111100 122333334556666 577
Q ss_pred EeecccccC---------CcC-CcCEEEEEeCChHHHHHHHHhcC
Q psy6661 81 IDYHSAEMF---------PER-WIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 81 i~~~~~~~~---------~~~-~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+|+.+-.-. ... .+-..|.+.++++++..|+..|.
T Consensus 81 lDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~ 125 (170)
T COG0645 81 LDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARK 125 (170)
T ss_pred EecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhC
Confidence 877542211 111 12235789999999999999997
No 148
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=99.04 E-value=1.2e-08 Score=74.00 Aligned_cols=134 Identities=22% Similarity=0.333 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhc--C--CcEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQG--G--GKIID 82 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~ii~ 82 (172)
+.+|+|+|.||||||+..+.|.. +| +-.+| .+.... ...+++.+. .... . -+++|
T Consensus 1 m~lvIVTGlSGAGKsvAl~~lED-lG-yycvD--NLPp~L----------------lp~~~~~~~-~~~~~~~kvAv~iD 59 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVLED-LG-YYCVD--NLPPQL----------------LPKLADLML-TLESRITKVAVVID 59 (286)
T ss_pred CcEEEEecCCCCcHHHHHHHHHh-cC-eeeec--CCCHHH----------------HHHHHHHHh-hcccCCceEEEEEe
Confidence 46899999999999999999965 57 54444 332111 001111110 0000 0 12222
Q ss_pred ecccccCC----------cCC-c-CEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHH--Hhhcc--CCcE
Q psy6661 83 YHSAEMFP----------ERW-I-DQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEA--RDSYK--EDIV 146 (172)
Q Consensus 83 ~~~~~~~~----------~~~-~-~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~ 146 (172)
-.....+. ... . -.++||+++.+++.+|-..-.++ ++...... .+..+-.++ ....+ ++.+
T Consensus 60 iRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~-HPL~~~~~--l~~~I~~ERelL~pLk~~A~~v 136 (286)
T COG1660 60 VRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRS-HPLSEDGL--LLEAIAKERELLAPLREIADLV 136 (286)
T ss_pred cccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhc-CCCCccCc--HHHHHHHHHHHHHHHHHHhhhE
Confidence 22111111 110 1 24689999999999999764332 33222111 111111122 22222 5699
Q ss_pred EeCCCCChhhHHHHHHHH
Q psy6661 147 VSLPSNTHDDMSSNVTSI 164 (172)
Q Consensus 147 i~~~~~~~~e~~~~i~~i 164 (172)
|||+++++.++.+.+...
T Consensus 137 IDTs~ls~~~Lr~~i~~~ 154 (286)
T COG1660 137 IDTSELSVHELRERIRTR 154 (286)
T ss_pred eecccCCHHHHHHHHHHH
Confidence 999999999995554443
No 149
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.04 E-value=3.3e-09 Score=85.35 Aligned_cols=93 Identities=15% Similarity=0.282 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcC-CcEEee
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGG-GKIIDY 83 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~ 83 (172)
.+..+|++.|+|||||||+|+.+++..+ +.+++.|.+-. ....+..+...+..| .+|+|.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g-~~~vn~D~lg~------------------~~~~~~~a~~~L~~G~sVVIDa 427 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAG-YKHVNADTLGS------------------TQNCLTACERALDQGKRCAIDN 427 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcC-CeEECcHHHHH------------------HHHHHHHHHHHHhCCCcEEEEC
Confidence 3567899999999999999999999989 99999887621 123445566666666 578876
Q ss_pred cccccC---------CcCCc-CEEEEEeCChHHHHHHHHhcCC
Q psy6661 84 HSAEMF---------PERWI-DQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 84 ~~~~~~---------~~~~~-~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
....-- ..... -..+|+++|.+++.+|+..|..
T Consensus 428 Tn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 428 TNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 543211 11112 2367899999999999999964
No 150
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.03 E-value=2.7e-09 Score=79.66 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=29.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC--ceEEehhhHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDS--LEWIDVNKIA 43 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~--~~~i~~d~~~ 43 (172)
+|.|+|++||||||+++.|++.++. ..+++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 4789999999999999999987741 5678888764
No 151
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.02 E-value=2.2e-09 Score=73.19 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=53.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc---CCce--EEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCC-cEEe
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC---DSLE--WIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGG-KIID 82 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~--~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ii~ 82 (172)
+|+|+|.|||||||+++.|++.+ + .. +++.|.+.... ....+............+..........|. +|++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g-~~~~~i~~d~~r~~l--~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid 77 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRG-RPVYVLDGDNVRHGL--NKDLGFSREDREENIRRIAEVAKLLADAGLIVIAA 77 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEEcCHHHHHhh--hhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 48999999999999999999988 4 43 45555554321 111000000000000111222222334454 4455
Q ss_pred eccccc-----CC---cCCcCEEEEEeCChHHHHHHHHh
Q psy6661 83 YHSAEM-----FP---ERWIDQVYVLSADNTTLYDRLVE 113 (172)
Q Consensus 83 ~~~~~~-----~~---~~~~~~~i~l~~~~~~~~~Rl~~ 113 (172)
...... +. ....-..+|++||.+++.+|..+
T Consensus 78 ~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 78 FISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred cCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 432110 00 11122358999999999999655
No 152
>PLN02772 guanylate kinase
Probab=98.94 E-value=2e-08 Score=77.69 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..+.|+|+|||||||+||.+.|.+.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 456899999999999999999988653
No 153
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.91 E-value=6.5e-08 Score=76.34 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCce-EEehhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLE-WIDVNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~-~i~~d~~~ 43 (172)
++.+|++.|+|||||||++..|+++++ +. +++.|.+-
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg-~~~ii~tD~iR 291 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG-ITRIVSTDAVR 291 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC-CcEEeehhHHH
Confidence 578899999999999999999999999 87 66777663
No 154
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.91 E-value=1e-08 Score=73.21 Aligned_cols=110 Identities=16% Similarity=0.265 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc--CCceEEehhhHHhhcccccccccccCCCC---cc--hhHHHHH-HHHHHhc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC--DSLEWIDVNKIARENQFYLKYDEQYECPE---LD--EDKLLDE-LEPRVQG 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l--~~~~~i~~d~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~-~~~~~~~ 76 (172)
.++..+++.|+|||||||++..+...+ +++.+++.|++....+.+........... .. ...+... +...+..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 457789999999999999999999987 33788999998665432221111100000 00 0112222 2333444
Q ss_pred C-CcEEeecccc------c---CCcCCcCE-EEEEeCChHHHHHHHHhc
Q psy6661 77 G-GKIIDYHSAE------M---FPERWIDQ-VYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 77 ~-~~ii~~~~~~------~---~~~~~~~~-~i~l~~~~~~~~~Rl~~r 114 (172)
+ ++++++.... + +....+.. ++++.++++....|...|
T Consensus 93 ~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R 141 (199)
T PF06414_consen 93 RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQR 141 (199)
T ss_dssp T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHH
T ss_pred CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHH
Confidence 4 6788765432 1 12233333 467999999999999887
No 155
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.91 E-value=5.7e-08 Score=72.90 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCce-EEehhhHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLE-WIDVNKIA 43 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~-~i~~d~~~ 43 (172)
+.+.+|+|.|++||||||+|..|+++|+ ++ +++.|.+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~-~~~vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLG-IRSVIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-CCEEEechHHH
Confidence 3467899999999999999999999999 87 67766664
No 156
>PRK15453 phosphoribulokinase; Provisional
Probab=98.87 E-value=2.2e-08 Score=74.30 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIAR 44 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~ 44 (172)
++.++|+|+|.|||||||+++.|++.++. ..+++.|.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 46789999999999999999999987742 45788888765
No 157
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.86 E-value=1.7e-08 Score=70.97 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=57.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc----c----cccccccccC-----C------------CCcch
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN----Q----FYLKYDEQYE-----C------------PELDE 63 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~----~----~~~~~~~~~~-----~------------~~~~~ 63 (172)
+|.|.+..|||++++|+.|+++|| +++++- +++... + .+..+.+... . .....
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg-~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG-YPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDD 78 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT---EE-H-HHHHHCT------------SS-HHH--HH---HHS-------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcC-CccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHH
Confidence 589999999999999999999999 999986 443322 1 1111111100 0 00112
Q ss_pred hHHHH----HHHHHHhcCCcEEeecccccCCcCCcC-EEEEEeCChHHHHHHHHhcC
Q psy6661 64 DKLLD----ELEPRVQGGGKIIDYHSAEMFPERWID-QVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 64 ~~~~~----~~~~~~~~~~~ii~~~~~~~~~~~~~~-~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+.+.. .+.++...+++|+.+....++.+..++ +.|||.+|.+.+.+|+.++.
T Consensus 79 ~~~~~~~~~~i~~la~~~~~Vi~GR~a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 79 DKIFRAQSEIIRELAAKGNCVIVGRCANYILRDIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp -HHHHHHHHHHHHHHH---EEEESTTHHHHTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCEEEEecCHhhhhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence 23333 333444567888877655544433343 56999999999999999883
No 158
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.85 E-value=2.1e-08 Score=73.64 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC------ceEEehhhHHhhcccccccc-cccCC--CCcchhHHHHHHHHHHh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS------LEWIDVNKIARENQFYLKYD-EQYEC--PELDEDKLLDELEPRVQ 75 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~------~~~i~~d~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~ 75 (172)
+.+.+|.|+|++|+||||+|+.|+..+.. ...+.+|.+..........+ ..++. .-+|...+++.+..+.+
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~ 159 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKA 159 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhc
Confidence 34678999999999999999999887643 33455555543331111111 01111 12344555555554432
Q ss_pred cCC---------------------------cEEeecc------cccCCcCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 76 GGG---------------------------KIIDYHS------AEMFPERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 76 ~~~---------------------------~ii~~~~------~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.+. +|++|.+ +..+-..++|+.||++++.+.+.+|+.+|-
T Consensus 160 ~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rf 232 (283)
T COG1072 160 GKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERF 232 (283)
T ss_pred CCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHH
Confidence 111 1222211 222334678999999999999999999993
No 159
>KOG3308|consensus
Probab=98.84 E-value=5.2e-08 Score=68.30 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCC----CcchhHHHHHHHHHHh-----
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECP----ELDEDKLLDELEPRVQ----- 75 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----- 75 (172)
++..+|.|.|.+.|||||||+.|.+.|+++.+|+-|++.....-.......+... -++-..+++.+.-.+.
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~ 81 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA 81 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcccc
Confidence 4567899999999999999999999998788999888865431110000000000 0011122222211110
Q ss_pred ---------------------c---C--CcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 76 ---------------------G---G--GKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 76 ---------------------~---~--~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
. . -+++++....-.+ ...++..|.+..+-+++++|...|..
T Consensus 82 ~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~ 150 (225)
T KOG3308|consen 82 PEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTY 150 (225)
T ss_pred chHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhccccc
Confidence 0 1 1455654433333 24467889999999999999999964
No 160
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.81 E-value=3.6e-08 Score=79.80 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~ 43 (172)
...+|.|.|+|||||||+++.|+..++....++.|++.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 35689999999999999999999988536788888874
No 161
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.78 E-value=3.4e-08 Score=75.62 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=59.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC-----ceEEehhhHHhhcccccccccccCCCCcc--hhHHHHHHHHHH-hc-CCc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDS-----LEWIDVNKIARENQFYLKYDEQYECPELD--EDKLLDELEPRV-QG-GGK 79 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~-~~~ 79 (172)
+.+|+|+|||||||+++.|++.+.. +.+++.|+++.+.......+.... ..|. ...++..++..+ +. ||.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~-~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIP-SQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcH-HHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3689999999999999999977651 348899999865422111111000 0110 123333333332 22 333
Q ss_pred EEeec-cc--ccCCc-----CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 80 IIDYH-SA--EMFPE-----RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 80 ii~~~-~~--~~~~~-----~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.+... .. ..++. +.-+.+|||+++++....|+..+.
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~ 123 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPA 123 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHH
Confidence 33210 00 11110 112678999999999999998654
No 162
>COG4639 Predicted kinase [General function prediction only]
Probab=98.75 E-value=1.3e-07 Score=63.72 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=65.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCC-cchhHHHHHHHHHHhcCC-cEEeecc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPE-LDEDKLLDELEPRVQGGG-KIIDYHS 85 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ii~~~~ 85 (172)
..++|.|+|||||||+++..- .. +..++.|++-...+... ..+..+... .-.+.+...++..+..|. .|+|...
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~-~~~lsld~~r~~lg~~~-~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn 78 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQ-NYVLSLDDLRLLLGVSA-SKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATN 78 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CC-cceecHHHHHHHhhhch-hhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 578999999999999998863 34 88999998866542111 111111111 013456666677777775 5666533
Q ss_pred cc------cCC---c-CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 86 AE------MFP---E-RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 86 ~~------~~~---~-~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.. +.+ + ......|+++.|.+.|.+|...|.
T Consensus 79 ~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~ 118 (168)
T COG4639 79 LRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE 118 (168)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc
Confidence 11 111 1 222446899999999999987554
No 163
>KOG0744|consensus
Probab=98.73 E-value=1.5e-07 Score=70.74 Aligned_cols=29 Identities=34% Similarity=0.735 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEW 36 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~ 36 (172)
.++|++.||||+||||+|++|++++. +..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS-IR~ 205 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS-IRT 205 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe-eee
Confidence 46799999999999999999999987 553
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.71 E-value=1.7e-08 Score=66.89 Aligned_cols=29 Identities=38% Similarity=0.779 Sum_probs=26.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 10 I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
|+|.|||||||||+++.+++.++ .+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-FPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-cccccc
Confidence 68999999999999999999999 887653
No 165
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.71 E-value=4e-07 Score=61.64 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe--hhhHHhhc---ccccccccccCC--------CCc-chhHH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID--VNKIAREN---QFYLKYDEQYEC--------PEL-DEDKL 66 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~--~d~~~~~~---~~~~~~~~~~~~--------~~~-~~~~~ 66 (172)
|..|.+.++|+|.|.|-+|||++|.++.+-+. .|+.+ .|-+.... ......+-.+.. .+. -...+
T Consensus 17 ~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a-~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi 95 (205)
T COG3896 17 MAGMPEGRIVLLNGGSSAGKSSIALAFQDLAA-EPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPI 95 (205)
T ss_pred HcCCCCceEEEecCCCccchhHHHHHHHHHhh-cchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhH
Confidence 44577899999999999999999999998776 66654 44443221 011111101111 000 01112
Q ss_pred HHH--------HHHHHhcC-CcEEeeccc--ccCCc-----CCcCE-EEEEeCChHHHHHHHHhcCCCCchhhhhhchHH
Q psy6661 67 LDE--------LEPRVQGG-GKIIDYHSA--EMFPE-----RWIDQ-VYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEI 129 (172)
Q Consensus 67 ~~~--------~~~~~~~~-~~ii~~~~~--~~~~~-----~~~~~-~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~ 129 (172)
.+. |.-....| +++.|.... .++.. ..+++ .|-+.||.|+..+|...|+...+.+.. -+
T Consensus 96 ~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG~~r-g~--- 171 (205)
T COG3896 96 LELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPGWNR-GS--- 171 (205)
T ss_pred HHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcchhh-hh---
Confidence 221 12222345 345543211 11110 11233 466999999999998887643332221 11
Q ss_pred HHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHH
Q psy6661 130 FQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTS 163 (172)
Q Consensus 130 ~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~ 163 (172)
+++.-..-.=++-+||+..||.|.+..|++
T Consensus 172 ----~r~vHa~~~YDlevDTS~~tp~EcAr~i~~ 201 (205)
T COG3896 172 ----ARAVHADAEYDLEVDTSATTPHECAREIHE 201 (205)
T ss_pred ----HHHhcCCcceeeeecccCCCHHHHHHHHHH
Confidence 111111001157778888999999555544
No 166
>KOG3078|consensus
Probab=98.68 E-value=3.1e-08 Score=71.40 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccc-cc------cccCCCCcchhHHHHHHHHHHhc--
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLK-YD------EQYECPELDEDKLLDELEPRVQG-- 76 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~-- 76 (172)
+....++.|+||+||+|++..+++.++ +.++++++++++.-.... .+ ......+.| ......+...+..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~-~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpD-eiv~~~l~~~l~~~~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFG-VIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPD-EVVVRLLEKRLENPR 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcC-CccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcH-HHHHHHHHhhccccc
Confidence 357799999999999999999999999 999999999887511100 01 111122222 2233344433332
Q ss_pred --CCcEEeecccccC------C-cCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 77 --GGKIIDYHSAEMF------P-ERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 77 --~~~ii~~~~~~~~------~-~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
.+.++|+..+... + ....+.+|.+.+|.+.+.+|+..|
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r 138 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGR 138 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcc
Confidence 3567777544332 1 244688999999999999999988
No 167
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.68 E-value=3.3e-08 Score=58.51 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999984
No 168
>KOG0730|consensus
Probab=98.66 E-value=8.3e-08 Score=77.69 Aligned_cols=34 Identities=24% Similarity=0.610 Sum_probs=30.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
..++-|++.|||||||||+|++||+.-+ +.|++.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~-~nFlsv 499 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAG-MNFLSV 499 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhc-CCeeec
Confidence 5678899999999999999999999988 888763
No 169
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.63 E-value=3e-07 Score=67.90 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=30.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHh
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIAR 44 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~ 44 (172)
+|.|+|.|||||||+++.|++.|+. ..+++.|.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5899999999999999999987742 45788888876
No 170
>PHA03132 thymidine kinase; Provisional
Probab=98.62 E-value=7.7e-08 Score=77.94 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
..+|+|.|+.||||||+++.|++.+| ..++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg-~~Vi 286 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILG-DNVL 286 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhC-CceE
Confidence 67899999999999999999999985 5544
No 171
>PLN02165 adenylate isopentenyltransferase
Probab=98.59 E-value=7.2e-08 Score=73.33 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=34.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
..+..+|+|.||+||||||++..|++.++ ..+++.|..
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~-~eIIsaDs~ 77 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP-SEIINSDKM 77 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC-CceecCChh
Confidence 34567899999999999999999999999 999998877
No 172
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.54 E-value=1e-07 Score=72.20 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
.++++|+|+||+||||||+|..|+++++ ..+++.|..
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~-~~iis~Ds~ 38 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLN-GEIISADSM 38 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCC-CcEEecccc
Confidence 3457899999999999999999999999 888887773
No 173
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.50 E-value=3.1e-06 Score=57.87 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=26.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 10 ILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 10 I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
|+=.+.+||||||++.+|++.||++.++.-|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 444689999999999999999986666665555
No 174
>KOG3327|consensus
Probab=98.48 E-value=3.7e-06 Score=58.39 Aligned_cols=157 Identities=16% Similarity=0.112 Sum_probs=80.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe----------------hhhHHhhcccccccccccCCCCc--chhH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID----------------VNKIARENQFYLKYDEQYECPEL--DEDK 65 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~----------------~d~~~~~~~~~~~~~~~~~~~~~--~~~~ 65 (172)
|.+..+|++.|.-+|||||.+..|.+.+. -.... .+.+.+.. +. .+....+..| +.-.
T Consensus 2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l~~FP~Rst~iGk~i~~YL~k~--~d-l~d~~iHLlFSAnRwe 77 (208)
T KOG3327|consen 2 MIRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAELLRFPERSTSIGKLIDGYLRKK--SD-LPDHTIHLLFSANRWE 77 (208)
T ss_pred CCCccEEeeeccccCCceeehhHHHHHHH-hccChHHhhhcchhcccccHHHHHHHHhc--cC-CcHHHHHHHhccchhh
Confidence 45788999999999999999999988753 11110 11111110 00 0000011111 1123
Q ss_pred HHHHHHHHHhcCC-cEEee-cc-------cccCCc----------CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhc
Q psy6661 66 LLDELEPRVQGGG-KIIDY-HS-------AEMFPE----------RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQ 126 (172)
Q Consensus 66 ~~~~~~~~~~~~~-~ii~~-~~-------~~~~~~----------~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~ 126 (172)
..+.|.+.+..|. +|+|- .+ +.-+.- -.||+++||+++|+. .+|...++. +...+...
T Consensus 78 ~~~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG~--Erye~v~f 154 (208)
T KOG3327|consen 78 HVSLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFGE--ERYETVAF 154 (208)
T ss_pred HHHHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcch--hHHHHHHH
Confidence 4455666666775 56542 00 000110 236899999999999 555555552 22222111
Q ss_pred hHHHHHHHHHHHhhccC-CcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 127 CEIFQTILEEARDSYKE-DIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
.+.....++.-...-.. ..++|. ..+.+++.++|..|++.+
T Consensus 155 qekv~~~~q~l~r~e~~~~~~vDA-s~sve~V~~~V~~i~e~~ 196 (208)
T KOG3327|consen 155 QEKVLVFFQKLLRKEDLNWHVVDA-SKSVEKVHQQVRSLVENV 196 (208)
T ss_pred HHHHHHHHHHHHhccCCCeEEEec-CccHHHHHHHHHHHHHHh
Confidence 22233333332211112 244443 468888877777776655
No 175
>PRK09169 hypothetical protein; Validated
Probab=98.48 E-value=9.4e-07 Score=79.72 Aligned_cols=135 Identities=5% Similarity=-0.077 Sum_probs=81.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHHHHhcCCcE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEPRVQGGGKI 80 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (172)
...|+|.|.+|+||||+++.|+++++ +.+++.|..+... .+|...+ +| .+.-...+.+.+. ..+|
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg-~~FiDtD~kIeks~GrkI~rIFa~eG------~F-Re~Eaa~V~Dllr-~~vV 2180 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLR-VDKPHSVRKIAKKIGKKIARIQALRG------LS-PEQAAARVRDALR-WEVV 2180 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhC-CCccccHHHHHHHhCCCHHHHHHhcC------ch-HHHHHHHHHHHhc-CCeE
Confidence 45789999999999999999999999 9999999887654 2333222 22 1222333333333 2233
Q ss_pred Ee-eccc-------ccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhc-------hHHHHHHHHHHHhhcc--C
Q psy6661 81 ID-YHSA-------EMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQ-------CEIFQTILEEARDSYK--E 143 (172)
Q Consensus 81 i~-~~~~-------~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~ 143 (172)
+. +... ..+.. -+.+||+..+.+++.+|+.... +++....... ......++.++.+.|+ .
T Consensus 2181 LSTGGGav~~~enr~~L~~--~GlvV~L~an~~tl~~Rty~g~-NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvA 2257 (2316)
T PRK09169 2181 LPAEGFGAAVEQARQALGA--KGLRVMRINNGFAAPDTTYAGL-NVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQ 2257 (2316)
T ss_pred EeCCCCcccCHHHHHHHHH--CCEEEEEECCHHHHHHHhccCC-CCccccCCCCccchhccHHHHHHHHHHhHHHHHHhc
Confidence 32 2111 22222 2679999999999999997543 2222211111 1234456677778886 4
Q ss_pred CcEEeCCCCC
Q psy6661 144 DIVVSLPSNT 153 (172)
Q Consensus 144 ~~~i~~~~~~ 153 (172)
+..++++..+
T Consensus 2258 Dl~V~~~~~~ 2267 (2316)
T PRK09169 2258 DLEVAPARER 2267 (2316)
T ss_pred CcccccCCCC
Confidence 5677665433
No 176
>KOG0733|consensus
Probab=98.47 E-value=1.1e-06 Score=71.01 Aligned_cols=32 Identities=22% Similarity=0.603 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.+.-|+|.||||||||.+|++++.+++ .|+++
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~-vPf~~ 253 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELG-VPFLS 253 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcC-CceEe
Confidence 456699999999999999999999999 99986
No 177
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.47 E-value=2.4e-07 Score=66.63 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....++|.||||+||||+|..+|+.++ ..+..
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~-~~~~~ 80 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELG-VNFKI 80 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT---EEE
T ss_pred CcceEEEECCCccchhHHHHHHHhccC-CCeEe
Confidence 356799999999999999999999999 77653
No 178
>KOG4235|consensus
Probab=98.46 E-value=2.4e-06 Score=59.82 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=30.6
Q ss_pred cCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHH
Q psy6661 94 IDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEAR 138 (172)
Q Consensus 94 ~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~ 138 (172)
.|.+|||.++|+++.+|+..|+++++........+.+....+..+
T Consensus 154 ~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WL 198 (244)
T KOG4235|consen 154 LDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWL 198 (244)
T ss_pred cceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHH
Confidence 578999999999999999999876554333233333444444443
No 179
>PRK06761 hypothetical protein; Provisional
Probab=98.43 E-value=2.4e-07 Score=69.25 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++|+|+|+|||||||+++.|++++. ...++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~-~~g~~ 33 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILS-QNGIE 33 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC-cCceE
Confidence 46899999999999999999999987 54444
No 180
>PLN02840 tRNA dimethylallyltransferase
Probab=98.42 E-value=3e-07 Score=72.05 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
.+.++|+|+||+||||||++..|+++++ ..+++.|.+
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~-~~iis~Ds~ 55 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLN-GEIISADSV 55 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCC-CCeEecccc
Confidence 4567899999999999999999999999 888876653
No 181
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1e-06 Score=67.05 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
..++-|+|.||||+|||-+|+++|++.+ +.||.
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~-AtFIr 215 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTD-ATFIR 215 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC-ceEEE
Confidence 3467799999999999999999999988 88875
No 182
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.41 E-value=2.1e-07 Score=64.26 Aligned_cols=33 Identities=42% Similarity=0.630 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhh
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARE 45 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~ 45 (172)
+|+|+|++||||||+++.|+++ | ++++ .++.+.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g-~~~v--~E~ar~ 33 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-G-YPVV--PEYARE 33 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T--EEE----TTHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-C-CeEE--eecHHH
Confidence 5899999999999999999998 8 9988 344443
No 183
>KOG0733|consensus
Probab=98.41 E-value=9.9e-07 Score=71.28 Aligned_cols=31 Identities=29% Similarity=0.647 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+.-|+|+||||||||-+|+++|++-| ..|++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag-~NFis 575 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG-ANFIS 575 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc-CceEe
Confidence 45699999999999999999999998 88887
No 184
>PRK09087 hypothetical protein; Validated
Probab=98.40 E-value=3e-06 Score=61.72 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHHHHhcCCcE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEPRVQGGGKI 80 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (172)
.+.++|+|++|||||++++++++..+ ..+++.+.+..+. ++..- ++......++..+++.+......+..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~l~i--DDi~~~~~~~~~lf~l~n~~~~~g~~i 120 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-ALLIHPNEIGSDAANAAAEGPVLI--EDIDAGGFDETGLFHLINSVRQAGTSL 120 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-CEEecHHHcchHHHHhhhcCeEEE--ECCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 45699999999999999999999888 8999875433211 11111 111111123456777777766666544
Q ss_pred E-eecc-cc--------cCCcCCcCEEEEEeCChHHHHHHHHh
Q psy6661 81 I-DYHS-AE--------MFPERWIDQVYVLSADNTTLYDRLVE 113 (172)
Q Consensus 81 i-~~~~-~~--------~~~~~~~~~~i~l~~~~~~~~~Rl~~ 113 (172)
+ .+.. +. +..+-....++-+..+.+.....+..
T Consensus 121 lits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 121 LMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred EEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 3 3321 11 11111224566677766654444433
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.38 E-value=3.7e-07 Score=60.47 Aligned_cols=26 Identities=38% Similarity=0.695 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...++|.|||||||||+++.++..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 46899999999999999999999987
No 186
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.38 E-value=4.2e-07 Score=71.06 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
+..|+|.|||||||||+++.|++.++ .+++..|..
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~-~~fi~vdat 81 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLAN-APFIKVEAT 81 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CeEEEeecc
Confidence 57899999999999999999999999 999987743
No 187
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.37 E-value=3.3e-07 Score=62.27 Aligned_cols=27 Identities=37% Similarity=0.627 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+..|+|||+||+||||++..+++.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 457899999999999999999998875
No 188
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.36 E-value=1.1e-06 Score=73.53 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
+....|++.|.||+||||+++.|++.++ +..++.
T Consensus 213 ~~~~~~~~vglp~~GKStia~~L~~~l~-~~~~~~ 246 (664)
T PTZ00322 213 MGSLIVIMVGLPGRGKTYVARQIQRYFQ-WNGLQS 246 (664)
T ss_pred ccceeEEecccCCCChhHHHHHHHHHHH-hcCCCc
Confidence 4567899999999999999999999986 555543
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.33 E-value=5.5e-07 Score=60.46 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=25.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
.|+|.|+||+|||++++.|++.++ .+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~-~~~~ 28 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG-RPVI 28 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT-CEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh-cceE
Confidence 379999999999999999999998 7764
No 190
>KOG0734|consensus
Probab=98.33 E-value=6.1e-07 Score=71.50 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
++-|+|+||||+|||-+|+++|-+-+ .||+.
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~-VPFF~ 367 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAG-VPFFY 367 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccC-CCeEe
Confidence 56799999999999999999999988 99885
No 191
>COG3911 Predicted ATPase [General function prediction only]
Probab=98.31 E-value=8.2e-07 Score=59.55 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=27.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
+.++++++|+|.||+||||+..+|+++ | +..+
T Consensus 6 ~nR~~~fIltGgpGaGKTtLL~aLa~~-G-fatv 37 (183)
T COG3911 6 FNRHKRFILTGGPGAGKTTLLAALARA-G-FATV 37 (183)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHc-C-ceee
Confidence 456789999999999999999999986 7 6544
No 192
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.29 E-value=7.2e-07 Score=69.81 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
+..|+|.|||||||||+|+.|++.++ .+++..|..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~-~~fi~vD~t 84 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLAN-APFIKVEAT 84 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-Chheeecch
Confidence 57899999999999999999999999 999887653
No 193
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.29 E-value=1.1e-06 Score=63.16 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=30.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceE-EehhhHHhhc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEW-IDVNKIAREN 46 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~-i~~d~~~~~~ 46 (172)
+|+|+|.|||||||+++.+.++ | .++ ++..+.+++.
T Consensus 2 iI~i~G~~gsGKstva~~~~~~-g-~~~~~~~~d~ik~~ 38 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIEN-Y-NAVKYQLADPIKEI 38 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhc-C-CcEEEehhHHHHHH
Confidence 7999999999999999999876 6 666 8877776643
No 194
>PRK06851 hypothetical protein; Provisional
Probab=98.29 E-value=5.3e-07 Score=69.69 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.++++|+|+||+||||+.+.+.+.+.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~ 55 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFL 55 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999888764
No 195
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.28 E-value=9.3e-07 Score=61.56 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceE
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEW 36 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~ 36 (172)
.+|+|+|+|||||||+|..|+.+++ .+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~-~~~ 29 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG-LQV 29 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC-CCc
Confidence 4799999999999999999999877 543
No 196
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.28 E-value=7.1e-07 Score=68.60 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS 33 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~ 33 (172)
+.++++|.|||||||||++++|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999999874
No 197
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.28 E-value=8.9e-07 Score=61.60 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=26.3
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
|.. ++++++.|+|++||||||+++.|...+.
T Consensus 1 ~~~-~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 1 MNK-TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCC-CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 555 4677999999999999999999987765
No 198
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.27 E-value=9.4e-07 Score=65.72 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|.|||||||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999864
No 199
>KOG0731|consensus
Probab=98.26 E-value=2.3e-06 Score=71.15 Aligned_cols=31 Identities=26% Similarity=0.635 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
++-++|+||||||||-+|+++|.+-| .||++
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAg-VPF~s 374 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAG-VPFFS 374 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccC-Cceee
Confidence 56699999999999999999999988 99986
No 200
>KOG3062|consensus
Probab=98.25 E-value=9e-06 Score=58.26 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCc-EE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGK-II 81 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii 81 (172)
|+.|+|+|-|.|||||.|+.|.+.|.. ..+.-.|+-....+--..++.......+ ...+.+.+.+.++.+.+ |+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~l-Rg~L~S~v~R~Lsk~~iVI~ 79 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKAL-RGKLRSAVDRSLSKGDIVIV 79 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHH-HHHHHHHHHhhcccCcEEEE
Confidence 588999999999999999999988742 1111112221110000111111100000 23466666667777654 55
Q ss_pred eeccc-ccCC------cCCcC---EEEEEeCChHHHHHHHHhcCC
Q psy6661 82 DYHSA-EMFP------ERWID---QVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 82 ~~~~~-~~~~------~~~~~---~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
|.-.. .-|+ .+... -+|+..+|++.+.+--.+|..
T Consensus 80 DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~ 124 (281)
T KOG3062|consen 80 DSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERED 124 (281)
T ss_pred ecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCC
Confidence 54221 1111 11111 157788899999887777653
No 201
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.25 E-value=1.2e-06 Score=65.76 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=29.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
+|+|+||+|||||+++..|+++++ ..+++.|..
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~-~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN-AEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC-CcEEEechh
Confidence 489999999999999999999999 888887764
No 202
>KOG1384|consensus
Probab=98.24 E-value=5e-06 Score=62.56 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
+.++|+|.|+.|||||-|+--||.+|+ ..+|..|.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~-~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFP-GEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCC-ceeecccce
Confidence 578999999999999999999999999 888876655
No 203
>PLN02748 tRNA dimethylallyltransferase
Probab=98.24 E-value=1.5e-06 Score=69.18 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNK 41 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~ 41 (172)
++.++|+|.||+||||||++..|+++++ ..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~-~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFP-VEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC-eeEEcCch
Confidence 3567899999999999999999999999 99998875
No 204
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.24 E-value=1.6e-06 Score=57.75 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=26.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
+...+|+|.|++||||||+++.+++.+| ..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg-~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG-IQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC-CC
Confidence 3467899999999999999999999998 54
No 205
>PHA03136 thymidine kinase; Provisional
Probab=98.23 E-value=3.9e-06 Score=64.68 Aligned_cols=26 Identities=15% Similarity=0.472 Sum_probs=23.3
Q ss_pred cCEEEEEeCChHHHHHHHHhcCCCCc
Q psy6661 94 IDQVYVLSADNTTLYDRLVEKGQSGK 119 (172)
Q Consensus 94 ~~~~i~l~~~~~~~~~Rl~~r~~~~~ 119 (172)
+|.+||++++++++.+|+.+|++..+
T Consensus 192 pD~IIyL~l~~e~~~~RI~kRgR~~E 217 (378)
T PHA03136 192 GGNIVIMDLDECEHAERIIARGRPGE 217 (378)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 67899999999999999999996554
No 206
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.23 E-value=1.2e-06 Score=60.91 Aligned_cols=23 Identities=48% Similarity=0.886 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+|+|||+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 207
>KOG4238|consensus
Probab=98.22 E-value=8.3e-07 Score=67.64 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---CCceEE--ehhhHHhhccccccc-ccccCCCCcchhHHHHHHHHHHhcCCc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---DSLEWI--DVNKIARENQFYLKY-DEQYECPELDEDKLLDELEPRVQGGGK 79 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i--~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
+...|+++|.||+||||++-+|.+-+ | +|-+ +.|.+......-..+ .++...++ .-+.++..+++..|.
T Consensus 49 rgctvw~tglsgagkttis~ale~~l~~~g-ipcy~ldgdnirhgl~knlgfs~edreeni----rriaevaklfadagl 123 (627)
T KOG4238|consen 49 RGCTVWLTGLSGAGKTTISFALEEYLVSHG-IPCYSLDGDNIRHGLNKNLGFSPEDREENI----RRIAEVAKLFADAGL 123 (627)
T ss_pred cceeEEeeccCCCCcceeehHHHHHHHhcC-CcccccCcchhhhhhhhccCCCchhHHHHH----HHHHHHHHHHhcCCc
Confidence 46679999999999999999997654 5 5544 455554332111111 11111111 223344555666654
Q ss_pred EEeecccccC-----------C-cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEE
Q psy6661 80 IIDYHSAEMF-----------P-ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVV 147 (172)
Q Consensus 80 ii~~~~~~~~-----------~-~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 147 (172)
|.-..+..-| + ...+-+-||++++.+++.+|-.+.-+......+..-...+..-|+ +......++
T Consensus 124 vcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~ye---~pe~~e~vl 200 (627)
T KOG4238|consen 124 VCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSDYE---KPETPERVL 200 (627)
T ss_pred eeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccccC---CCCChhHHh
Confidence 4322111111 1 122234589999999999987554221111111011111111111 111134677
Q ss_pred eCCCCChhhHHHHHHHHHHHHH
Q psy6661 148 SLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 148 ~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
+++..+..+. ++.+++++.
T Consensus 201 ~t~~~~v~~c---vqqvve~lq 219 (627)
T KOG4238|consen 201 KTNLSTVSDC---VQQVVELLQ 219 (627)
T ss_pred hcCCchHHHH---HHHHHHHHH
Confidence 7766666666 666666664
No 208
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.21 E-value=1.8e-06 Score=69.91 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...+++|+|||||||||+.+.|++.+| +.+..
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg-~~v~E 75 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELG-FEVQE 75 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhC-CeeEE
Confidence 356899999999999999999999999 87765
No 209
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.2e-06 Score=67.62 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNK 41 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~ 41 (172)
+....+|.||||+||||+|+.+++.++ +.|..++.
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~-~~f~~~sA 81 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTN-AAFEALSA 81 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhC-CceEEecc
Confidence 456679999999999999999999988 88875433
No 210
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.21 E-value=1.3e-05 Score=67.93 Aligned_cols=32 Identities=34% Similarity=0.645 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
..-|+|.||||||||++++++++.++ ++++..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~-~~fi~v 518 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG-ANFIAV 518 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC-CCEEEE
Confidence 45699999999999999999999998 887753
No 211
>PRK06851 hypothetical protein; Provisional
Probab=98.20 E-value=1.1e-06 Score=67.91 Aligned_cols=25 Identities=40% Similarity=0.731 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.++++|+|+||+||||+++.+++.+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 4679999999999999999998876
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=2.3e-06 Score=57.07 Aligned_cols=26 Identities=38% Similarity=0.727 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+|||||||+++.+.+.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999987
No 213
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.18 E-value=2e-06 Score=69.15 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
.++-|+|.||||||||++|+++++.++ .+++..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~-~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQ-LPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC-CCEEEE
Confidence 456799999999999999999999999 888764
No 214
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.18 E-value=1.6e-06 Score=58.33 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998865
No 215
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.18 E-value=2.1e-06 Score=63.88 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
....|+|.|+||||||++|+.|++.+| .+++
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg-~~~~ 50 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRD-RPVM 50 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhC-CCEE
Confidence 346789999999999999999999988 7766
No 216
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.17 E-value=2.1e-06 Score=67.38 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++.|+|.||||||||++|++++++++ .+++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~-~~~i~ 195 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETN-ATFIR 195 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhC-CCEEE
Confidence 356799999999999999999999998 77664
No 217
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.17 E-value=1.9e-06 Score=65.54 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
...|+|.|+|||||||+++.|++.++ ++++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~-~~~~ 93 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN-WPCV 93 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC-CCeE
Confidence 45799999999999999999999999 8876
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.17 E-value=1.7e-06 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|++|+|.|++|||||||+++|...
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 578999999999999999999764
No 219
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=98.17 E-value=9.3e-07 Score=60.06 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=42.2
Q ss_pred cCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHH-HHHHHHHhhccC--CcEEeCCCCChhhHHHHHHHHH
Q psy6661 94 IDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQ-TILEEARDSYKE--DIVVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 94 ~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~i~~~~~~~~e~~~~i~~i~ 165 (172)
|+++|||+||++++.+|+.+|++..+........+.+. ..|......+.. -.++|.++.+..+....+..++
T Consensus 68 pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~ 142 (146)
T PF01712_consen 68 PDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVI 142 (146)
T ss_dssp -SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHH
Confidence 68999999999999999999996554322223333444 445555544433 3677776655555543344433
No 220
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.15 E-value=1.9e-06 Score=61.34 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
|++++|.||+|||||.+|-.|++++| .++|..|.+
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g-~pvI~~Dri 35 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTG-APVISLDRI 35 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH---EEEEE-SG
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhC-CCEEEecce
Confidence 56899999999999999999999999 999987776
No 221
>KOG0707|consensus
Probab=98.15 E-value=4.3e-05 Score=54.99 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS 33 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~ 33 (172)
....|+|+||+|+||+|+.+.|-+.++.
T Consensus 36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~ 63 (231)
T KOG0707|consen 36 DFKPIVLSGPSGVGKSTLLKRLREELGG 63 (231)
T ss_pred CCceEEEeCCCCcchhHHHHHHHHHcCC
Confidence 3467999999999999999999999984
No 222
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.15 E-value=2.6e-06 Score=66.94 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
-.++|+|+|++|||||||++.|++++| ...+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g-~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFN-TTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhC-CCeee
Confidence 367899999999999999999999998 76543
No 223
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.14 E-value=2.6e-06 Score=67.14 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=29.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVN 40 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d 40 (172)
...|+|.||||||||++|+.|++.++ .+++..+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~-~pf~~id 140 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILD-VPFAIAD 140 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC-CCceecc
Confidence 46799999999999999999999998 8887544
No 224
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.12 E-value=3.3e-06 Score=65.11 Aligned_cols=33 Identities=36% Similarity=0.383 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+.+..++|.||||||||.+|+++++++| ++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg-~~~i~ 178 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG-IEPIV 178 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC-CCeEE
Confidence 4567899999999999999999999999 87663
No 225
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.12 E-value=2.5e-06 Score=60.82 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVV 28 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~ 28 (172)
.+.-++.|+|||||||||+.+.+.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999995
No 226
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.11 E-value=4e-06 Score=65.92 Aligned_cols=32 Identities=31% Similarity=0.601 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++.|+|.||||||||++++++++.++ .+++.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~-~~fi~ 209 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTT-ATFIR 209 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC-CCEEE
Confidence 457799999999999999999999988 77765
No 227
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=98.11 E-value=3.9e-06 Score=56.93 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
..-|+|+|+||+||||++..|.++ | +.++.-|.+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g-~~lvaDD~v 47 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-G-HRLVADDRV 47 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-C-CeEEECCEE
Confidence 456899999999999999999886 8 888864433
No 228
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.10 E-value=1.7e-05 Score=57.44 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIAREN 46 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~ 46 (172)
....|++.|.||.|||++|+.|.+-|.= ..+++.+++.+..
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~ 55 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKL 55 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecc
Confidence 3567999999999999999999976520 4578888887765
No 229
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.10 E-value=4.3e-06 Score=65.15 Aligned_cols=31 Identities=32% Similarity=0.643 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
++.++|.||||||||+++++++++++ .+++.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~-~~~~~ 186 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN-ATFIR 186 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC-CCEEe
Confidence 56699999999999999999999998 77765
No 230
>CHL00181 cbbX CbbX; Provisional
Probab=98.10 E-value=3.6e-06 Score=63.46 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|.|+|||||||+|+.+++.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998864
No 231
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.10 E-value=3.5e-06 Score=58.76 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=24.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+...++++||+|+|||.+++.|++.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346799999999999999999999988
No 232
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.07 E-value=3.6e-06 Score=57.91 Aligned_cols=27 Identities=44% Similarity=0.489 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...-.|.|+|||||||||+.+.++...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 356789999999999999999998754
No 233
>KOG0743|consensus
Probab=98.07 E-value=3e-06 Score=66.23 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=27.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+-++|.|||||||||+..++|+.|+ +.+++
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~-ydIyd 265 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN-YDIYD 265 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC-CceEE
Confidence 4589999999999999999999999 98875
No 234
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.07 E-value=4.8e-06 Score=67.39 Aligned_cols=33 Identities=27% Similarity=0.625 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
.++.++|.||||||||+++++++..++ .+++..
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~-~~~~~i 119 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAG-VPFFSI 119 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcC-CCeeec
Confidence 355699999999999999999999998 888754
No 235
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.06 E-value=5.2e-06 Score=65.33 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=27.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
..|+|+||||||||++|+.|++.++ .++...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~-~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN-VPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC-CCeEEe
Confidence 5799999999999999999999998 887643
No 236
>PRK04195 replication factor C large subunit; Provisional
Probab=98.05 E-value=5.2e-06 Score=67.00 Aligned_cols=32 Identities=31% Similarity=0.632 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
.+.++|+||||+||||++++|++.++ +.++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~-~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG-WEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-CCEEEE
Confidence 57799999999999999999999999 887753
No 237
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.05 E-value=5.5e-06 Score=47.53 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...+|+|++||||||+..++.--
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998644
No 238
>PF13245 AAA_19: Part of AAA domain
Probab=98.04 E-value=5.8e-06 Score=49.74 Aligned_cols=25 Identities=36% Similarity=0.720 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCCHH-HHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKS-TLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKs-T~a~~L~~~l 31 (172)
....+|.|+|||||| |++..++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456778999999999 5555555443
No 239
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.04 E-value=6.5e-06 Score=62.48 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEW 36 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~ 36 (172)
...++|+||||+||||+++.+++.++ ..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~-~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG-VNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC-CCE
Confidence 45699999999999999999999988 654
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.04 E-value=3.8e-06 Score=55.56 Aligned_cols=27 Identities=33% Similarity=0.709 Sum_probs=20.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++...++|.|++|||||++++.+.+.+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999986
No 241
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.03 E-value=5.7e-06 Score=63.42 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.+.|+|.|+|||||||+++.|++.++ .+++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~-~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN-TTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC-CCEEe
Confidence 56899999999999999999999989 87754
No 242
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.03 E-value=8e-06 Score=61.69 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
|+..++|+|+||.|||||.+|-.|+++ . ..+|++|..
T Consensus 1 ~~~~~ii~I~GpTasGKS~LAl~LA~~-~-~eIIsaDS~ 37 (300)
T PRK14729 1 MKENKIVFIFGPTAVGKSNILFHFPKG-K-AEIINVDSI 37 (300)
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHh-C-CcEEeccHH
Confidence 455679999999999999999999999 6 678877665
No 243
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=98.03 E-value=2.5e-05 Score=60.26 Aligned_cols=106 Identities=17% Similarity=0.278 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-cccccccccCCCC-cchhHHHHHHHHHHhcCCcEEee
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDEQYECPE-LDEDKLLDELEPRVQGGGKIIDY 83 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ii~~ 83 (172)
....+++.|+.|||||++...|.+. + ..++|..+.+.-.+ .|...+..-.+.. | +..+...+...-....+++++
T Consensus 140 ~~~~ivl~G~TGsGKT~iL~~L~~~-~-~~vlDlE~~aehrGS~fG~~~~~qpsQ~~F-e~~l~~~l~~~~~~~~i~vE~ 216 (345)
T PRK11784 140 QFPLVVLGGNTGSGKTELLQALANA-G-AQVLDLEGLANHRGSSFGRLGGPQPSQKDF-ENLLAEALLKLDPARPIVVED 216 (345)
T ss_pred cCceEecCCCCcccHHHHHHHHHhc-C-CeEEECCchhhhccccccCCCCCCcchHHH-HHHHHHHHHcCCCCCeEEEEe
Confidence 3456889999999999999999875 7 88999888876542 2222222110110 0 122333332222223466766
Q ss_pred ccccc----CC-----cCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 84 HSAEM----FP-----ERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 84 ~~~~~----~~-----~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
+...+ ++ .-....+|+|++|.+.+.+|+...
T Consensus 217 Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~l~~~ 256 (345)
T PRK11784 217 ESRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVERLLED 256 (345)
T ss_pred ccccccCccCCHHHHHHHhhCCEEEEECCHHHHHHHHHHH
Confidence 54322 11 111245889999999999999765
No 244
>PHA02244 ATPase-like protein
Probab=98.03 E-value=5.9e-06 Score=63.81 Aligned_cols=36 Identities=25% Similarity=0.559 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
....|+|.|++|||||++++++++.++ .+++....+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg-~pfv~In~l 153 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALD-LDFYFMNAI 153 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhC-CCEEEEecC
Confidence 356789999999999999999999999 998865543
No 245
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.03 E-value=3.5e-06 Score=55.48 Aligned_cols=28 Identities=32% Similarity=0.719 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
.++|.|+||+||||+++.|++.+| ..+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~-~~f~ 28 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG-LSFK 28 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT---EE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC-Ccee
Confidence 479999999999999999999998 7654
No 246
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.03 E-value=4.6e-06 Score=62.16 Aligned_cols=27 Identities=44% Similarity=0.565 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
-+..+|.|||+||+||||+...|..+|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 467899999999999999999999886
No 247
>PRK06620 hypothetical protein; Validated
Probab=98.02 E-value=5.8e-06 Score=59.73 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=26.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+.++|.||||||||++++++++..+ ..++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-AYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-CEEcc
Confidence 5699999999999999999998877 66655
No 248
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.02 E-value=4e-06 Score=53.88 Aligned_cols=23 Identities=52% Similarity=0.725 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 10 ILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 10 I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988765
No 249
>PLN02796 D-glycerate 3-kinase
Probab=98.02 E-value=6.3e-06 Score=63.14 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~ 43 (172)
++.+|.|.|++||||||+++.|...+.. ...++.|++.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4567999999999999999999988752 2356666664
No 250
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.01 E-value=7.7e-06 Score=64.94 Aligned_cols=32 Identities=25% Similarity=0.584 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....++|.||||||||+++++++++++ .+++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~-~~fi~ 247 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETS-ATFLR 247 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC-CCEEE
Confidence 456799999999999999999999988 77664
No 251
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.01 E-value=7.4e-06 Score=62.95 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
....++|+||||+||||+++.+++.++ ..+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~-~~~~ 80 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMG-VNIR 80 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhC-CCeE
Confidence 356799999999999999999999998 6543
No 252
>KOG1970|consensus
Probab=98.01 E-value=5.8e-06 Score=66.16 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+..+.+||||+||||||..+.|++.+| +.++.
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg-~~~~E 140 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELG-YQLIE 140 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhC-ceeee
Confidence 456899999999999999999999999 88875
No 253
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.00 E-value=7.8e-06 Score=64.75 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....++|+|||||||||+++.+++.++ ..++.
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~-~~~~~ 66 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATD-APFEA 66 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 345789999999999999999999988 77664
No 254
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.00 E-value=6.7e-06 Score=60.39 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+-++.|++.||||+|||.+|++|+++.. .|++.
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~k-vp~l~ 181 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAK-VPLLL 181 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccC-CceEE
Confidence 4578999999999999999999999988 88875
No 255
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.00 E-value=9.6e-06 Score=51.89 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
....+.|.|+|||||||+++.+. -| -..+..+++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G-~i~~~g~di 47 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KR-KHRLVGDDN 47 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CC-eEEEeeEeH
Confidence 35679999999999999999997 24 334454444
No 256
>PF13173 AAA_14: AAA domain
Probab=97.99 E-value=1.1e-05 Score=53.49 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC---CceEEehhhHHh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD---SLEWIDVNKIAR 44 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~~i~~d~~~~ 44 (172)
.+.++|+|+.||||||+++.+++.+. ++.++++++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 47899999999999999999997753 266777665543
No 257
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.98 E-value=2.2e-05 Score=65.49 Aligned_cols=32 Identities=25% Similarity=0.643 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
++-|+|.|+|||||||+++.++++++ .+++..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~-~~f~~i 216 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAK-VPFFTI 216 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcC-CCEEEE
Confidence 34599999999999999999999999 887753
No 258
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=1.1e-05 Score=60.97 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
+++.|+|+||.|||||-+|-.|+++++ .++|+.|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~-~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLG-GEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcC-CcEEecchh
Confidence 467899999999999999999999999 999987766
No 259
>KOG0991|consensus
Probab=97.98 E-value=6.2e-06 Score=59.65 Aligned_cols=27 Identities=37% Similarity=0.662 Sum_probs=24.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..++.++|+||||+||||-+..|++++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 468999999999999999999999886
No 260
>PF05729 NACHT: NACHT domain
Probab=97.97 E-value=6.8e-06 Score=56.35 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+++|+|.+|+||||+++.++.++.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 261
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.97 E-value=5.8e-06 Score=57.85 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=19.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...+.++|+|++||||||+.+.+.+++.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999988765
No 262
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.97 E-value=8.2e-06 Score=53.58 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
+...+|+|.|.-||||||+++.+++.+| ..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg-~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALG-ID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC-CC
Confidence 3467899999999999999999999998 53
No 263
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.97 E-value=5.3e-06 Score=60.83 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..+|.|||+||+||||+...|...+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999998876
No 264
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.95 E-value=1.4e-05 Score=57.92 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC----CceEEehhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD----SLEWIDVNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~----~~~~i~~d~~~ 43 (172)
....++|+|++||||||+++.+++... .+.++++.++.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 457899999999999999999987642 14566666553
No 265
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.95 E-value=1.3e-05 Score=61.69 Aligned_cols=34 Identities=32% Similarity=0.605 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC-ceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS-LEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~-~~~i~ 38 (172)
+..+.|+|+||||||||.+|-++++.||. .||+.
T Consensus 48 ~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 35788999999999999999999999985 56653
No 266
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.94 E-value=1.5e-05 Score=58.01 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc-----CCceEEehhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC-----DSLEWIDVNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~~i~~d~~~ 43 (172)
....++|+|++|||||++++++++.. . +.+++.....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~-~~~i~~~~~~ 82 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRN-ARYLDAASPL 82 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCc-EEEEehHHhH
Confidence 35679999999999999999999875 4 5677765553
No 267
>CHL00176 ftsH cell division protein; Validated
Probab=97.94 E-value=1.1e-05 Score=66.93 Aligned_cols=33 Identities=24% Similarity=0.648 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
.++.|+|.||||||||+++++++...+ .+++..
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~-~p~i~i 247 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAE-VPFFSI 247 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-CCeeec
Confidence 356799999999999999999999988 888754
No 268
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.94 E-value=9.6e-06 Score=58.64 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
.+.-++.|.|||||||||+...+.-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999975
No 269
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.94 E-value=8.7e-06 Score=58.12 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
-.|+|+||+||||||++..|...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999887764
No 270
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=9.9e-06 Score=58.98 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+.-++.|.|||||||||+.+.++-.
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 271
>PRK06893 DNA replication initiation factor; Validated
Probab=97.93 E-value=1.3e-05 Score=58.43 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc-----CCceEEehh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC-----DSLEWIDVN 40 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~~i~~d 40 (172)
.+.++|.|+||||||+++.++++.+ . ..|++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~-~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRT-AIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCC-eEEeeHH
Confidence 4568999999999999999999775 4 6677764
No 272
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.93 E-value=1.1e-05 Score=63.30 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIAR 44 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~ 44 (172)
++.+|.|.|++||||||+++.|...+.. ...++.|++..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 4678999999999999999999876631 33567777653
No 273
>KOG0739|consensus
Probab=97.92 E-value=2.7e-05 Score=58.36 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
-.-|+|.||||+|||.+|++++.+-+ ..|++
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn-STFFS 196 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN-STFFS 196 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC-CceEE
Confidence 34599999999999999999999877 66654
No 274
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.91 E-value=1.2e-05 Score=60.50 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++|+|+|||||||+|+.+++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999998887765
No 275
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.4e-05 Score=64.66 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
....++|.||||||||++|++++...+ .++++.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~-~~fi~v 307 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR-SRFISV 307 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC-CeEEEe
Confidence 456899999999999999999999888 888763
No 276
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.91 E-value=1.3e-05 Score=59.66 Aligned_cols=26 Identities=46% Similarity=0.672 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...++|+|++||||||+++.+.+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998875
No 277
>KOG0736|consensus
Probab=97.90 E-value=2.2e-05 Score=65.19 Aligned_cols=33 Identities=39% Similarity=0.862 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
++.--|+|.||||||||-+|+++|.++. ..|++
T Consensus 703 rkRSGILLYGPPGTGKTLlAKAVATEcs-L~FlS 735 (953)
T KOG0736|consen 703 RKRSGILLYGPPGTGKTLLAKAVATECS-LNFLS 735 (953)
T ss_pred cccceeEEECCCCCchHHHHHHHHhhce-eeEEe
Confidence 3455699999999999999999999999 99987
No 278
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.90 E-value=8e-05 Score=51.65 Aligned_cols=150 Identities=13% Similarity=0.200 Sum_probs=77.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC--ceEEehhhHHhhc----------ccccc--cccccCCC---------CcchhH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDS--LEWIDVNKIAREN----------QFYLK--YDEQYECP---------ELDEDK 65 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~--~~~i~~d~~~~~~----------~~~~~--~~~~~~~~---------~~~~~~ 65 (172)
+|+|+|..+|||-|++..|.++++. +.++...+.+++. .++.. +.+.+... --|+.-
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 5899999999999999999999872 2256655444432 11111 11111000 001122
Q ss_pred HHHHHHHHHhcCCcEEeecc----cccCCcCC-cCE-EEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHh
Q psy6661 66 LLDELEPRVQGGGKIIDYHS----AEMFPERW-IDQ-VYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARD 139 (172)
Q Consensus 66 ~~~~~~~~~~~~~~ii~~~~----~~~~~~~~-~~~-~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (172)
+++.+.+......+||.+.. ...|.... ..+ .|-|.++++++.+|.-... ....+ ...+ .-+.
T Consensus 81 F~r~~~~~~~~~v~iIsD~Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~Ft---~gvdd-~~SE-------c~lD 149 (182)
T TIGR01223 81 FCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT---PGVDD-AESE-------CGLD 149 (182)
T ss_pred HHHHHHhccCCCEEEEeCCCcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHhcc---ccccc-cccc-------cCCC
Confidence 33333322222333444321 11222222 123 4779999999999985543 11111 1111 1122
Q ss_pred hc-cCCcEEeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 140 SY-KEDIVVSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 140 ~~-~~~~~i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
.| .-+++|. |+.+.+++.++++.++..+..
T Consensus 150 d~~~~D~vi~-Nd~~~~~l~~~l~~l~~~i~~ 180 (182)
T TIGR01223 150 NFGDFDWVIE-NHGVEQRLEEQLENLIEFIRS 180 (182)
T ss_pred cccceeEEEe-cCCChHHHHHHHHHHHHHHHh
Confidence 22 2355553 455667788889999988753
No 279
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.90 E-value=1e-05 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++|.|+|+++|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998776
No 280
>PLN03025 replication factor C subunit; Provisional
Probab=97.90 E-value=1.2e-05 Score=61.55 Aligned_cols=26 Identities=35% Similarity=0.696 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.+.++|.||||+||||++.++++.+
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999986
No 281
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=1.1e-05 Score=65.03 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.++.|+|.||||||||++++++++.++
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 356799999999999999999999986
No 282
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.89 E-value=1.2e-05 Score=58.23 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+.-.+.|.|+|||||||+++.|+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 4667899999999999999999853
No 283
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.88 E-value=1.3e-05 Score=55.16 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
|++|.|+|.+||||||+++.|...+.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998864
No 284
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.83 E-value=2e-05 Score=55.64 Aligned_cols=28 Identities=36% Similarity=0.597 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.....++|+|++||||||+.+.|...+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3467899999999999999999987654
No 285
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.82 E-value=2.3e-05 Score=66.44 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....|+|.|||||||||+++++++.++ .+++.
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~-~~~i~ 242 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAG-AYFIS 242 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhC-CeEEE
Confidence 356799999999999999999999998 77764
No 286
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.82 E-value=0.00086 Score=48.88 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
.+.+|+|.|..||||+.+.+.|.+.+. -..+
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lD-PRg~ 60 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLN-PRGA 60 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcC-CCee
Confidence 467899999999999999999999886 4443
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.82 E-value=1.2e-05 Score=59.06 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=18.8
Q ss_pred EEcCCCCCHHHHHHHHHHHcC
Q psy6661 12 ITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 12 l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++||+||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999875
No 288
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.1e-05 Score=64.81 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
..+.++++|.||||+|||++++-+|+.++ -+|+.
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~-RkfvR 380 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALG-RKFVR 380 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhC-CCEEE
Confidence 35678999999999999999999999999 66654
No 289
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.81 E-value=1.9e-05 Score=60.53 Aligned_cols=27 Identities=41% Similarity=0.492 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..+|.|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999887665
No 290
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=6.2e-05 Score=61.53 Aligned_cols=32 Identities=28% Similarity=0.612 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
-++-+++.||||+|||.+|++.+..-+ .|+++
T Consensus 182 iPkGvlLvGpPGTGKTLLAkAvAgEA~-VPFf~ 213 (596)
T COG0465 182 IPKGVLLVGPPGTGKTLLAKAVAGEAG-VPFFS 213 (596)
T ss_pred cccceeEecCCCCCcHHHHHHHhcccC-CCcee
Confidence 356799999999999999999999988 88764
No 291
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.81 E-value=1.9e-05 Score=60.41 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..-+++|.|||||||||+.+.+|--
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999853
No 292
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.81 E-value=2e-05 Score=55.31 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+.-+++|+||||+||||+.+.+-..
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhh
Confidence 35668999999999999999999755
No 293
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.80 E-value=2.3e-05 Score=57.39 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~ 42 (172)
....++|+||+|||||+++.++++.+.+ +.|++.+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 3467999999999999999999876431 356666553
No 294
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.80 E-value=1.6e-05 Score=62.45 Aligned_cols=26 Identities=38% Similarity=0.673 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..-|++.|+||+||||+|++||+-|.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHHH
Confidence 45699999999999999999998764
No 295
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.80 E-value=2.8e-05 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+++|+|++|||||++|..++...+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~ 24 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG 24 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999998755
No 296
>KOG0737|consensus
Probab=97.80 E-value=1.9e-05 Score=60.43 Aligned_cols=33 Identities=36% Similarity=0.716 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+..+.|++.||||||||.+|++++++.| ..++.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akeag-a~fIn 157 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEAG-ANFIN 157 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHcC-CCcce
Confidence 4577899999999999999999999999 88875
No 297
>PRK10646 ADP-binding protein; Provisional
Probab=97.80 E-value=3.4e-05 Score=52.59 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSL 34 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~ 34 (172)
...+|+|.|.-|+||||+++.+++.+| .
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg-~ 54 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALG-H 54 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-C
Confidence 456899999999999999999999998 5
No 298
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.79 E-value=2.2e-05 Score=54.70 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=26.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc---CC-ceEEehhhH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC---DS-LEWIDVNKI 42 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l---~~-~~~i~~d~~ 42 (172)
+++++|+|||||||++..|+..+ |. ..+++.|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 68999999999999999988765 30 345666644
No 299
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.79 E-value=1.8e-05 Score=57.29 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
+..++|.|+||+||||+|+.|+. . ..+++.|..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~-~~~~~~d~~ 44 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--K-TLVLSFDMS 44 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--C-CEEEecccc
Confidence 57799999999999999999963 3 566776664
No 300
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.79 E-value=2.4e-05 Score=60.07 Aligned_cols=26 Identities=27% Similarity=0.668 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+.++|.|||||||||+++.+++.+.
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998864
No 301
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=97.79 E-value=2.9e-05 Score=53.58 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
..-|+|+|+||+||||+|-.|.++ | +.++.-|.+
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~r-G-h~lvaDD~v 51 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIKR-G-HRLVADDRV 51 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-T--EEEESSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-C-CeEEeCCEE
Confidence 345899999999999999999987 8 887764444
No 302
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.79 E-value=2.1e-05 Score=60.51 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
.+.-++.|.|||||||||+.+.+|-
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999985
No 303
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.79 E-value=1.8e-05 Score=64.39 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
.+.++++|.||||+||||+++.|++.+..++++
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y 133 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLMERVPIY 133 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHhCcce
Confidence 356799999999999999999999987655544
No 304
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.79 E-value=2.8e-05 Score=65.43 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNK 41 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~ 41 (172)
+...++|+||||+||||+++.+++.++ ..++..+.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~-~~f~~lna 85 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTR-AHFSSLNA 85 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc-Ccceeehh
Confidence 456789999999999999999999887 77665443
No 305
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=2e-05 Score=63.34 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..++|+||||+||||+|+.+++.++
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3489999999999999999999876
No 306
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.79 E-value=1.9e-05 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+++|+|+|||||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998775
No 307
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.00041 Score=55.14 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
..++=....||||||+++.|.+.+| ++++.-|++
T Consensus 375 tll~pia~igcgktt~ak~l~~lf~-w~~vqnd~l 408 (758)
T COG5324 375 TLLVPIATIGCGKTTVAKILEKLFG-WPVVQNDNL 408 (758)
T ss_pred EEEEEEEEeccCcccHHHHHHHHcC-CcccccCCC
Confidence 3566677899999999999999999 999987777
No 308
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.78 E-value=2.7e-05 Score=66.35 Aligned_cols=32 Identities=25% Similarity=0.597 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+.+.++|.|||||||||+|+.+++.++ .+++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~-~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALN-RKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc-CCeEE
Confidence 456899999999999999999999998 77764
No 309
>PRK13695 putative NTPase; Provisional
Probab=97.77 E-value=2.4e-05 Score=54.56 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.|+|+|++||||||+++.+.+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987665
No 310
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.77 E-value=0.00042 Score=50.45 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+|+|.|..||||+.+.+.|.+.+.
T Consensus 32 vlIl~eG~d~sGKg~~I~~l~~~lD 56 (228)
T PF03976_consen 32 VLILFEGWDASGKGGTINRLIEWLD 56 (228)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCCS-
T ss_pred EEEEEeccccCCchHHHHHHHHhCC
Confidence 5799999999999999999998875
No 311
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.76 E-value=2.5e-05 Score=53.72 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+++++.|+|.++|||||+...|..++.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHH
Confidence 368999999999999999999988774
No 312
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.76 E-value=2.7e-05 Score=54.67 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc----CCceEEehhhHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC----DSLEWIDVNKIA 43 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l----~~~~~i~~d~~~ 43 (172)
+..|.+.|||||||||+...+-+.+ . ..++..|-+.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~-~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYK-IAVITGDIYT 52 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCC-eEEEeceeec
Confidence 3789999999999999977755554 5 5666655444
No 313
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=2.4e-05 Score=60.93 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
..++|+||+|+||||+|+.+++.+. +.
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~-c~ 65 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLN-CQ 65 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhc-CC
Confidence 3479999999999999999999986 53
No 314
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=97.75 E-value=0.00054 Score=50.81 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=63.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCcEEeecccc-
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKIIDYHSAE- 87 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~- 87 (172)
=|+|.|.|=||||-++-.||. .| +..-. +.... + ...|.
T Consensus 145 DIiLvGVSRtsKTPlS~YLA~-~G-~KvAN---------~PLvp--e---------------------------~~lP~~ 184 (269)
T PRK05339 145 DVILVGVSRTSKTPTSLYLAN-KG-IKAAN---------YPLVP--E---------------------------VPLPEE 184 (269)
T ss_pred CEEEECcCCCCCcHHHHHHHc-cC-CceEe---------eCCCC--C---------------------------CCCCHH
Confidence 389999999999999999998 68 55443 11000 0 01111
Q ss_pred cCCcCCcCEEEEEeCChHHHHHHHHhcCCCC-chhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCCCChhhHHHHHHHH
Q psy6661 88 MFPERWIDQVYVLSADNTTLYDRLVEKGQSG-KKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSNTHDDMSSNVTSI 164 (172)
Q Consensus 88 ~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~e~~~~i~~i 164 (172)
+++ .....+|-|..+|+.+.+=..+|-.+- ...+. +.+....-+..+...|. .+.+||+++.+.||++..|-+.
T Consensus 185 L~~-~~~~kivGLtIdp~rL~~IR~~Rl~~lg~s~Ya--~~~~i~~El~~A~~l~~k~~~pvIdvT~kSIEEtA~~Il~~ 261 (269)
T PRK05339 185 LFP-IDPKKIFGLTIDPERLIEIRKERLPNLGLSRYA--SLEQCREELAEAERLFRREGIPVIDVTNKSIEETAAKILEI 261 (269)
T ss_pred HHh-CCCCcEEEEeCCHHHHHHHHHHHhcccCcCcCC--CHHHHHHHHHHHHHHHHHcCCCEEECCCCcHHHHHHHHHHH
Confidence 111 112467889999998876444442110 01111 11112111222222332 5799999999999995544443
Q ss_pred H
Q psy6661 165 I 165 (172)
Q Consensus 165 ~ 165 (172)
+
T Consensus 262 ~ 262 (269)
T PRK05339 262 L 262 (269)
T ss_pred H
Confidence 3
No 315
>PRK06526 transposase; Provisional
Probab=97.75 E-value=2.6e-05 Score=57.81 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+||||||||+++.+++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 45679999999999999999998763
No 316
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.75 E-value=3e-05 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+|++.|++||||||+.+.|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 317
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.74 E-value=2.8e-05 Score=58.21 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
|++|.|+|.+|||||||+..|...|.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~ 26 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLS 26 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998874
No 318
>KOG2004|consensus
Probab=97.74 E-value=3e-05 Score=63.99 Aligned_cols=33 Identities=15% Similarity=0.448 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
..+.+++++.||||.|||++++.+|+.++ -.|+
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALn-RkFf 467 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALN-RKFF 467 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhC-CceE
Confidence 35789999999999999999999999998 5554
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.73 E-value=3.3e-05 Score=54.10 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
.+..++.|.|++||||||+.+.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3567899999999999999999853
No 320
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.73 E-value=3.2e-05 Score=57.44 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
.-.++|.||||-||||+|..+|+.+| ..+-
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emg-vn~k 81 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELG-VNLK 81 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhc-CCeE
Confidence 56799999999999999999999998 6543
No 321
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.73 E-value=2.6e-05 Score=52.01 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 46789999999999999999997654
No 322
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.73 E-value=3.4e-05 Score=55.14 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..|.|+|++||||||+.+.+.+.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4789999999999999999988754
No 323
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.72 E-value=3.4e-05 Score=58.87 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
...++|+|+||+||||+++++++.++ ..++
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~-~~~~ 72 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVG-AEVL 72 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC-ccce
Confidence 34566699999999999999999887 5543
No 324
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.72 E-value=3.1e-05 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+..+-.|.|||||||||+.+.|-+.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhh
Confidence 35677899999999999999999654
No 325
>KOG1969|consensus
Probab=97.72 E-value=4.3e-05 Score=63.20 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...++.+|+||||-||||+|..+|++-| |.+++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG-YsVvE 356 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG-YSVVE 356 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC-ceEEE
Confidence 3578899999999999999999999999 99986
No 326
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=3.1e-05 Score=61.95 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
.++|+||+|+||||+|+.|++.++ +.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Ln-ce 67 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLN-CE 67 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-cc
Confidence 489999999999999999999987 64
No 327
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.72 E-value=3.7e-05 Score=69.55 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe--hhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID--VNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~--~d~~~ 43 (172)
.++-|+|.||||||||.+|++||...+ +|++. +.+++
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~-VPFIsISgs~fl 1667 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY-VPFITVFLNKFL 1667 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC-CceEEEEHHHHh
Confidence 466799999999999999999999998 99874 44544
No 328
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.72 E-value=3.3e-05 Score=61.24 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..+.|+|.|+||+||||+|+.|++.+.
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999998875
No 329
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.71 E-value=2.7e-05 Score=55.52 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~ 42 (172)
+++|+|.||+|+||||.+-.|+.++.. ..+++.|.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 367999999999999999999877531 446676666
No 330
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.71 E-value=3.7e-05 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998643
No 331
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.71 E-value=3.6e-05 Score=55.55 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998754
No 332
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.71 E-value=2.9e-05 Score=59.90 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+|+|++||||||++++|...++
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 467899999999999999999998765
No 333
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.70 E-value=3.8e-05 Score=55.27 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998654
No 334
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.70 E-value=4.8e-05 Score=58.52 Aligned_cols=32 Identities=25% Similarity=0.600 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.+..++|.|+||+|||++++.+++.++ .+++.
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~-~~~~~ 73 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALG-LPFVR 73 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhC-CCeEE
Confidence 457899999999999999999999999 77653
No 335
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.70 E-value=3.5e-05 Score=52.89 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+|.|+|++||||||++..|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 336
>KOG2702|consensus
Probab=97.70 E-value=9.8e-05 Score=53.38 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....+.+.|+|||||||++.++.+..
T Consensus 118 ~~~l~glag~pGtgkst~~a~v~~aW 143 (323)
T KOG2702|consen 118 NEELTGLAGRPGTGKSTRIAAVDNAW 143 (323)
T ss_pred chheeeeecCCCCcchhHHHHHHhhc
Confidence 34568999999999999999998853
No 337
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.70 E-value=3.3e-05 Score=55.08 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS 33 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 33 (172)
...++|.|+||||||++|+.+...+..
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 357999999999999999999987653
No 338
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.70 E-value=3.9e-05 Score=55.38 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.++..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 56789999999999999999998654
No 339
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=4e-05 Score=55.05 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 340
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.00077 Score=46.09 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=28.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHH-HHcCCceEEehhhHHhhc
Q psy6661 8 PNILITGTPGTGKSTLCEEVV-KQCDSLEWIDVNKIAREN 46 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~-~~l~~~~~i~~d~~~~~~ 46 (172)
...++.|+.||||||+-.... ..++++.+++.|.++...
T Consensus 3 ~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i 42 (187)
T COG4185 3 RLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI 42 (187)
T ss_pred eEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence 457889999999999865543 333436788999987763
No 341
>KOG0735|consensus
Probab=97.69 E-value=0.00033 Score=58.11 Aligned_cols=32 Identities=31% Similarity=0.674 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
-..-|+|.||||||||-++.+++...+ +.+|+
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~-~~fis 731 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSN-LRFIS 731 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCC-eeEEE
Confidence 356699999999999999999999988 99987
No 342
>KOG0726|consensus
Probab=97.69 E-value=3.8e-05 Score=57.39 Aligned_cols=33 Identities=27% Similarity=0.602 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+.++-+++.|+||+|||-+|+++|+... ..|+.
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVANqTS-ATFlR 249 (440)
T KOG0726|consen 217 KPPKGVILYGEPGTGKTLLAKAVANQTS-ATFLR 249 (440)
T ss_pred CCCCeeEEeCCCCCchhHHHHHHhcccc-hhhhh
Confidence 4577899999999999999999999987 66654
No 343
>PRK09183 transposase/IS protein; Provisional
Probab=97.69 E-value=4.2e-05 Score=56.91 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....++|.||||||||+++.+++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999655
No 344
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.68 E-value=5.8e-05 Score=57.80 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC-ceEE
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS-LEWI 37 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~-~~~i 37 (172)
+..+-|++.||||||||.+|-.+++.||. .||+
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 45788999999999999999999999984 5555
No 345
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.68 E-value=4.2e-05 Score=55.06 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 346
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.68 E-value=4.3e-05 Score=54.90 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 347
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.68 E-value=3.2e-05 Score=52.60 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..+|.+.|++||||||+.+.|...
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999753
No 348
>KOG0738|consensus
Probab=97.67 E-value=4.9e-05 Score=58.77 Aligned_cols=30 Identities=33% Similarity=0.787 Sum_probs=27.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+-|++.||||+|||.+|++++.+.+ ..|+.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~-tTFFN 275 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG-TTFFN 275 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc-CeEEE
Confidence 5689999999999999999999998 87764
No 349
>PRK04296 thymidine kinase; Provisional
Probab=97.67 E-value=3.6e-05 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..+++++|++||||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998876
No 350
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.67 E-value=4.4e-05 Score=54.64 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 351
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=4.5e-05 Score=55.78 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+++.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 352
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.67 E-value=4.6e-05 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+.++|.|+||+||||+.+.|...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 488999999999999999999764
No 353
>PRK12377 putative replication protein; Provisional
Probab=97.67 E-value=4.5e-05 Score=56.29 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARE 45 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~ 45 (172)
...++|.|+||||||+++.++++.+.. +.+++..+++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 357999999999999999999988631 335565555443
No 354
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.66 E-value=4.8e-05 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 355
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.66 E-value=4.7e-05 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998654
No 356
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=4.4e-05 Score=61.78 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
...++|+||+|+||||+|+.+++.+. +.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVN-CS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc-Cc
Confidence 35699999999999999999999987 64
No 357
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.66 E-value=5e-05 Score=57.66 Aligned_cols=27 Identities=44% Similarity=0.560 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.++.+|.|+|++||||||++..|...+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988764
No 358
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.66 E-value=6.8e-05 Score=50.56 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...+|+|.|.-|+||||+++.+++.+|
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 567899999999999999999999998
No 359
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.66 E-value=5.3e-05 Score=64.12 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
..++|+||||||||++|+.|++.++ .+++.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~-~~~i~ 518 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALG-IELLR 518 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CCcEE
Confidence 3689999999999999999999998 77654
No 360
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.66 E-value=4.3e-05 Score=55.33 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998653
No 361
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.66 E-value=4.3e-05 Score=55.00 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|++||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356789999999999999999998654
No 362
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.66 E-value=4.8e-05 Score=53.33 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 356789999999999999999998654
No 363
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.66 E-value=4.8e-05 Score=56.95 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEehhhH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDVNKI 42 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~d~~ 42 (172)
.++.+|.++|++|+||||++..|+..+ | ...++++|.+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 346789999999999999999998765 3 0345677754
No 364
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=5.5e-05 Score=59.57 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc----CC-ceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC----DS-LEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l----~~-~~~i~~d~~ 42 (172)
+..+|+|+||+||||||++..|+..+ |. ..++++|.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 35679999999999999999999754 20 345676664
No 365
>PRK13768 GTPase; Provisional
Probab=97.66 E-value=4.1e-05 Score=56.73 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..|++.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4689999999999999988888665
No 366
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=4.5e-05 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998654
No 367
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=5e-05 Score=54.66 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 368
>KOG0989|consensus
Probab=97.65 E-value=5e-05 Score=56.94 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
+-.+++++.||||+|||+.+.++++++. ++
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~-~~ 84 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALN-CE 84 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhc-Cc
Confidence 3468899999999999999999999987 53
No 369
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.65 E-value=4.2e-05 Score=49.61 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~ 29 (172)
.|+|.|.+|+||||+.+.|.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 370
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.65 E-value=5.2e-05 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+++.++..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56789999999999999999998765
No 371
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.65 E-value=4.5e-05 Score=54.50 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
..+++|+||+||||||+.+.++.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 36899999999999999999973
No 372
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.65 E-value=5.1e-05 Score=54.88 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 373
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.65 E-value=0.0014 Score=52.84 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....+|+|.|..||||+++.+.|.+.+.
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ld 65 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMD 65 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhC
Confidence 3467899999999999999999999886
No 374
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=5.1e-05 Score=55.61 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+++.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998654
No 375
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=5.6e-05 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998543
No 376
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.64 E-value=0.002 Score=47.90 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+.+|+|.|..||||..+.+.|.+.+.
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lD 81 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVN 81 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcC
Confidence 367899999999999999999999886
No 377
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.64 E-value=5.4e-05 Score=54.81 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 378
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=4.9e-05 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.|.|++||||||+.+.++..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998654
No 379
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.64 E-value=4.6e-05 Score=55.69 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 356789999999999999999998654
No 380
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=6.2e-05 Score=56.83 Aligned_cols=33 Identities=30% Similarity=0.557 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVN 40 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d 40 (172)
.-+|+|.||.|||||-+|+-||+.++ .||--+|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~Ln-VPFaiAD 129 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILN-VPFAIAD 129 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhC-CCeeecc
Confidence 45799999999999999999999999 9986433
No 381
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.64 E-value=5.6e-05 Score=54.39 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998754
No 382
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.63 E-value=5.1e-05 Score=58.04 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNK 41 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~ 41 (172)
++.+|+|+||+||||||++..|+..+.. ..+++.|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 4678999999999999999999877621 33455554
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=5.7e-05 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998653
No 384
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=5.6e-05 Score=55.19 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|.|++||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998764
No 385
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.63 E-value=5.2e-05 Score=57.98 Aligned_cols=25 Identities=40% Similarity=0.735 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...|+|+|++||||||++++|...+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998875
No 386
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=97.63 E-value=0.0014 Score=44.81 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=46.9
Q ss_pred HHHHhcCCcEEeecc--cccCCcCCcCEEEEEeCChHHHHHHHHhc-CC-CCchhhhhhchHHHHHHHHHHH---hhcc-
Q psy6661 71 EPRVQGGGKIIDYHS--AEMFPERWIDQVYVLSADNTTLYDRLVEK-GQ-SGKKLQDNLQCEIFQTILEEAR---DSYK- 142 (172)
Q Consensus 71 ~~~~~~~~~ii~~~~--~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r-~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~- 142 (172)
..+...+++|++|.. ...|+. .++.|||+|+++++.+|..+- .. ....-.+....+...+-+.... ..+.
T Consensus 57 r~~a~~~~vV~eGRDigTvVfPd--A~~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~ 134 (157)
T PF02224_consen 57 REIAKKGGVVMEGRDIGTVVFPD--ADLKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKERDERDSNREVAPLKK 134 (157)
T ss_dssp HHHHTTSCEEEEESSCCCCCCTT---SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-SS-
T ss_pred HHHHHcCCeEEecCCCceEEcCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhChhhccCccCCCcc
Confidence 344456789999854 335654 478999999999998766432 10 0111111111111111111111 0111
Q ss_pred --CCcEEeCCCCChhhHHHHHHHHHH
Q psy6661 143 --EDIVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 143 --~~~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
.+.+||+++++++++ ++.|++
T Consensus 135 a~DAi~IDts~lti~ev---v~~il~ 157 (157)
T PF02224_consen 135 AEDAIVIDTSNLTIEEV---VEKILE 157 (157)
T ss_dssp -TTSEEEETTTS-HHHH---HHHHHH
T ss_pred CCCeEEEECCCCCHHHH---HHHHhC
Confidence 359999999999999 777664
No 387
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.63 E-value=5.6e-05 Score=54.09 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998654
No 388
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.63 E-value=6.3e-05 Score=52.15 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|++||||||+++.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 389
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.63 E-value=5.6e-05 Score=55.08 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 390
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.63 E-value=5.9e-05 Score=49.53 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.++.++-+.|+||+|||.+++.+|+.+
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467778899999999999999999983
No 391
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.62 E-value=5.6e-05 Score=55.78 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+..++.|.||.||||||+.+.++.-+.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4578899999999999999999998654
No 392
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.62 E-value=6e-05 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+++.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998654
No 393
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=6e-05 Score=55.08 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999998654
No 394
>PRK14974 cell division protein FtsY; Provisional
Probab=97.62 E-value=5.3e-05 Score=58.25 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~d~~ 42 (172)
++.+|+|+|++|+||||++..|+..+ | ...++..|.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 46789999999999999777777654 3 0234555543
No 395
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.61 E-value=6.6e-05 Score=52.70 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 396
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.61 E-value=6.5e-05 Score=53.61 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 397
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.61 E-value=5.9e-05 Score=54.79 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 398
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=5.7e-05 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..++.|+|++||||||+.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999853
No 399
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=5.1e-05 Score=64.62 Aligned_cols=26 Identities=38% Similarity=0.531 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
.++|+|++|+||||+|+.|++.+. +.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Ln-ce 65 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLN-CE 65 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcc-Cc
Confidence 368999999999999999999988 64
No 400
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.61 E-value=6.4e-05 Score=54.67 Aligned_cols=27 Identities=44% Similarity=0.478 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356789999999999999999998643
No 401
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.61 E-value=4.9e-05 Score=54.92 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.+|.|||||||||++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999998777766665
No 402
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.61 E-value=6.3e-05 Score=57.09 Aligned_cols=27 Identities=33% Similarity=0.667 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+|+|++||||||++++|.+.+.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 346799999999999999999998763
No 403
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.61 E-value=0.0014 Score=56.40 Aligned_cols=27 Identities=37% Similarity=0.719 Sum_probs=23.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..+.++|.|+||+|||++++.|++++
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999886
No 404
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.61 E-value=6.8e-05 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+++.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999999998654
No 405
>KOG0727|consensus
Probab=97.61 E-value=6.4e-05 Score=55.19 Aligned_cols=31 Identities=32% Similarity=0.622 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+.-+++.||||||||.++++++++.. ..||.
T Consensus 189 prgvllygppg~gktml~kava~~t~-a~fir 219 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTMLAKAVANHTT-AAFIR 219 (408)
T ss_pred CcceEEeCCCCCcHHHHHHHHhhccc-hheee
Confidence 45689999999999999999999877 66664
No 406
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.61 E-value=6.6e-05 Score=50.83 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 346789999999999999999997654
No 407
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=6.4e-05 Score=55.22 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 408
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.60 E-value=6.6e-05 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998754
No 409
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=6.6e-05 Score=54.34 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.++..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998654
No 410
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.60 E-value=7.2e-05 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 56789999999999999999998654
No 411
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.60 E-value=8.1e-05 Score=63.33 Aligned_cols=33 Identities=24% Similarity=0.554 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.+..+++|.||||+||||+++.+++.++ .+++.
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~~~ 379 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATG-RKYVR 379 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 4567899999999999999999999988 77653
No 412
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.60 E-value=6.5e-05 Score=55.14 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+..++.|.|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999865
No 413
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.59 E-value=6.3e-05 Score=54.02 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...++|.|+|++||||||+.+.+.++++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578899999999999999999988755
No 414
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.59 E-value=5.8e-05 Score=54.94 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
|++|.|+|++||||||++..|+.+|.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~ 26 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLK 26 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHH
Confidence 46899999999999999999888873
No 415
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=6.8e-05 Score=54.98 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 416
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=6.8e-05 Score=55.60 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 417
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.59 E-value=6.9e-05 Score=54.09 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|.|++||||||+.+.++..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998643
No 418
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.59 E-value=6.5e-05 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.++|.|+||||||+++..++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999877654
No 419
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.59 E-value=5.8e-05 Score=58.97 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++.+|.|+|.+||||||++..|.+++.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999999998876
No 420
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.59 E-value=7.1e-05 Score=54.05 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 46789999999999999999998654
No 421
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.59 E-value=6.5e-05 Score=57.80 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+|+|++||||||+.++|.+.+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999998876
No 422
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.59 E-value=6.6e-05 Score=52.71 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---CC-ceEEehhhHHhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---DS-LEWIDVNKIARE 45 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~~-~~~i~~d~~~~~ 45 (172)
+...++|.|++|+|||.+|.++++++ |- +.|+...+++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 45679999999999999999998653 20 456777777655
No 423
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.58 E-value=8.2e-05 Score=63.05 Aligned_cols=26 Identities=35% Similarity=0.633 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|.|+||+|||++++.|++++
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999987
No 424
>PF13479 AAA_24: AAA domain
Probab=97.58 E-value=6.5e-05 Score=54.24 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
+...++|.|+||+||||++..+ +..-+++++.-
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g 34 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTENG 34 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCC
Confidence 4568999999999999999988 42567776544
No 425
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.58 E-value=8.4e-05 Score=54.90 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=25.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
-.+..+++|+|++|+||||+++.+.+.+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 35678999999999999999999998765
No 426
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.58 E-value=8.3e-05 Score=58.85 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---CC-ceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---DS-LEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~~-~~~i~~d~~ 42 (172)
++.+|+|+|++||||||++..|+..+ |. ..++++|.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 35789999999999999999998655 30 345677765
No 427
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.58 E-value=7.2e-05 Score=54.32 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998754
No 428
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.58 E-value=7.5e-05 Score=57.80 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+|+||+||||||+.+.|.+.+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 357899999999999999999987654
No 429
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.58 E-value=8e-05 Score=56.70 Aligned_cols=25 Identities=36% Similarity=0.724 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+.++|+|++||||||+++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999886
No 430
>PRK13764 ATPase; Provisional
Probab=97.58 E-value=6.5e-05 Score=61.79 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+++|++||||||++++|.+.+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356799999999999999999998765
No 431
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.58 E-value=7.3e-05 Score=54.51 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 432
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.58 E-value=7.6e-05 Score=54.31 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356789999999999999999998654
No 433
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=7.5e-05 Score=54.33 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.|++||||||+.+.|+..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 46789999999999999999998764
No 434
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=7.3e-05 Score=55.17 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|++||||||+++.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356789999999999999999998764
No 435
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=6.3e-05 Score=59.34 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
-++|+||+|+||||+|+.+++.+. +.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~-c~ 65 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVN-CQ 65 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-CC
Confidence 389999999999999999999987 64
No 436
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.57 E-value=6.8e-05 Score=56.45 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc----CC--ceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC----DS--LEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l----~~--~~~i~~d~~ 42 (172)
+..+|+|.||+||||||++..|+..+ |. +.++++|.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45689999999999999999998765 21 446676654
No 437
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=5.7e-05 Score=61.22 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..++|+||||+||||+++.|++.+.
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3469999999999999999999875
No 438
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.57 E-value=7.8e-05 Score=53.91 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 356789999999999999999998653
No 439
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=6.6e-05 Score=62.14 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
...++|+||+|+||||+|+.|++.++ +.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~Ln-C~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLN-CE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CC
Confidence 35689999999999999999999987 63
No 440
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.57 E-value=8.1e-05 Score=51.42 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998653
No 441
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=7.7e-05 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.|++||||||+++.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998754
No 442
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.57 E-value=7.1e-05 Score=55.90 Aligned_cols=27 Identities=37% Similarity=0.668 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+|+|++||||||+.+.|.+.+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred cceEEEEECCCccccchHHHHHhhhcc
Confidence 357899999999999999999999876
No 443
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.57 E-value=7.9e-05 Score=57.89 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+...|+|+||.||||||+.+.|.+.+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 444
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.57 E-value=7.8e-05 Score=54.40 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|++||||||+.+.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 445
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.56 E-value=9.7e-05 Score=56.68 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=27.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
.+.++++|.||.|+||||+++.|.+.+.+++++
T Consensus 86 ~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y 118 (358)
T PF08298_consen 86 ERKRILLLLGPVGGGKSSLAELLKRGLEEYPIY 118 (358)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHhheEEEE
Confidence 457889999999999999999999887654433
No 446
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.56 E-value=7.6e-05 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|++||||||+.+.|+..+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356789999999999999999998654
No 447
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.56 E-value=7.6e-05 Score=55.18 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+..++.|.|++||||||+.+.|+..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35678999999999999999999864
No 448
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.56 E-value=7.2e-05 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 346789999999999999999998654
No 449
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.56 E-value=8.1e-05 Score=53.37 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.++..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 56789999999999999999998643
No 450
>PRK08181 transposase; Validated
Probab=97.56 E-value=7.2e-05 Score=55.85 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEehhhHHhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDVNKIARE 45 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~d~~~~~ 45 (172)
+...++|.|+||+|||.++.+++.++ | .+.|++..+++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 34579999999999999999998643 3 0445666665543
No 451
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=6.8e-05 Score=61.15 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.++|+||+|+||||+|+.|++.+.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999876
No 452
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.56 E-value=7.8e-05 Score=54.36 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+..++.|.|++||||||+.+.|+..+.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567899999999999999999987543
No 453
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.56 E-value=8.4e-05 Score=53.33 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998653
No 454
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.56 E-value=8.2e-05 Score=52.31 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....+.|.|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998654
No 455
>PRK10908 cell division protein FtsE; Provisional
Probab=97.55 E-value=8.5e-05 Score=53.84 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 456
>PRK05642 DNA replication initiation factor; Validated
Probab=97.55 E-value=0.00012 Score=53.55 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc-----CCceEEehhhHHh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC-----DSLEWIDVNKIAR 44 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~~i~~d~~~~ 44 (172)
...++|.|++|||||++++++++++ . +.|++.+++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~-v~y~~~~~~~~ 86 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEP-AVYLPLAELLD 86 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCc-EEEeeHHHHHh
Confidence 3678999999999999999987542 3 66888777653
No 457
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.55 E-value=8.5e-05 Score=54.85 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|.|++||||||+.+.|+..+
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 458
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.55 E-value=8.4e-05 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998654
No 459
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=8.3e-05 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356789999999999999999998754
No 460
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.55 E-value=7.7e-05 Score=51.59 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4577999999999999999999764
No 461
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=8.4e-05 Score=54.54 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|.|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998754
No 462
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.55 E-value=0.00013 Score=45.19 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc---CCceEEehh
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC---DSLEWIDVN 40 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i~~d 40 (172)
+++++|.+|+||||++..|+..+ | ....-.|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRG-KRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEC
Confidence 47899999999999999999887 4 5554444
No 463
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.55 E-value=7.7e-05 Score=56.87 Aligned_cols=27 Identities=33% Similarity=0.676 Sum_probs=24.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+|+|++||||||++++|...+.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 467899999999999999999987764
No 464
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.54 E-value=8e-05 Score=55.06 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998764
No 465
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.54 E-value=9.9e-05 Score=50.79 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|.-......|++.|++||||||+.+.|...
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~ 30 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQG 30 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhC
Confidence 443334578999999999999999999743
No 466
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.8e-05 Score=51.38 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+...+.|.|++||||||+.+.++..+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356789999999999999999998754
No 467
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=8.6e-05 Score=54.21 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|++||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998653
No 468
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.54 E-value=0.00011 Score=57.72 Aligned_cols=26 Identities=42% Similarity=0.681 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+||+||||+++.+.+++
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 469
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.54 E-value=8.9e-05 Score=52.18 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
..+...|+|.|++||||||+.+.|..
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34567789999999999999999975
No 470
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.54 E-value=7.3e-05 Score=61.07 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+...+.|+|++||||||+++.|...+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678899999999999999999986553
No 471
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.1e-05 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998654
No 472
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=7.6e-05 Score=60.58 Aligned_cols=27 Identities=37% Similarity=0.496 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
.-++|+||+|+||||+|+.|++.+. +.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~ 65 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLN-CE 65 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhc-CC
Confidence 3479999999999999999999987 63
No 473
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.2e-05 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+++.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356789999999999999999998664
No 474
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.53 E-value=9.1e-05 Score=54.59 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356789999999999999999998654
No 475
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.53 E-value=9.1e-05 Score=54.22 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 356789999999999999999998654
No 476
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.53 E-value=8.6e-05 Score=57.74 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+||+|||++++.+.+++
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998764
No 477
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.53 E-value=8.3e-05 Score=52.15 Aligned_cols=22 Identities=50% Similarity=0.813 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
++++|+|..||||||+.+.|.+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999994
No 478
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.53 E-value=8.7e-05 Score=56.76 Aligned_cols=25 Identities=36% Similarity=0.743 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|+|++||||||++++|.+.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999876
No 479
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.53 E-value=9.6e-05 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998754
No 480
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=9.5e-05 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 481
>PHA02624 large T antigen; Provisional
Probab=97.53 E-value=0.00014 Score=59.55 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
.+...|+|.|||||||||++..|.+.++ ...+++
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~-G~vlsV 462 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCG-GKSLNV 462 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC-CeEEEe
Confidence 3456899999999999999999999997 556653
No 482
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.53 E-value=0.0001 Score=52.85 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEehhh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDVNK 41 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~d~ 41 (172)
.+..++.|+|+||||||+++..++... + .+-|++++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 356789999999999999999988543 2 155677654
No 483
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.53 E-value=0.00011 Score=62.20 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEE--ehhhHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWI--DVNKIA 43 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i--~~d~~~ 43 (172)
.++|+||+|+|||++|+.|++.++ .+++ +..++.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~-~~~~~~d~se~~ 521 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALG-VHLERFDMSEYM 521 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhc-CCeEEEeCchhh
Confidence 589999999999999999999998 7654 444443
No 484
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=8.5e-05 Score=54.84 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+...+.|.|.|||||||+++.+...+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 467889999999999999999998764
No 485
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.53 E-value=9.3e-05 Score=54.71 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 486
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.53 E-value=0.0001 Score=52.77 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|++||||||+.+.++..+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 356789999999999999999998653
No 487
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.52 E-value=9.4e-05 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998754
No 488
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=9.6e-05 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|+|++||||||+.+.++..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46789999999999999999998653
No 489
>KOG2028|consensus
Probab=97.52 E-value=8.9e-05 Score=57.10 Aligned_cols=34 Identities=26% Similarity=0.630 Sum_probs=26.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC--ceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS--LEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~--~~~i~ 38 (172)
.+.+-++|.||||+||||+|+.|+.--.. +.+|+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 35677999999999999999999875331 45665
No 490
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.52 E-value=9.5e-05 Score=54.23 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 491
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.52 E-value=0.00014 Score=55.35 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARE 45 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~ 45 (172)
..+.++|.|++|+|||+++.++++.+.. +.+++..+++.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 3567999999999999999999988621 345666666554
No 492
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.52 E-value=9e-05 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+++.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998764
No 493
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=9.5e-05 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356789999999999999999999543
No 494
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=8.4e-05 Score=53.18 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 356789999999999999999998754
No 495
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.52 E-value=9.3e-05 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 56789999999999999999999754
No 496
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=9.4e-05 Score=57.61 Aligned_cols=37 Identities=16% Similarity=0.404 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc----CC--ceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC----DS--LEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l----~~--~~~i~~d~~ 42 (172)
+..+|+|.||+|+||||++..|+.++ |. ..++..|.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 46789999999999999999999753 31 345666665
No 497
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.52 E-value=9.8e-05 Score=53.68 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|.|++||||||+.+.++..+
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998643
No 498
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=9.9e-05 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|+|++||||||+++.|+..+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356789999999999999999998764
No 499
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=8e-05 Score=59.96 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.-++|+||+|+||||+|+.+++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHc
Confidence 4699999999999999999999775
No 500
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=0.0001 Score=54.68 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998765
Done!