Query psy6661
Match_columns 172
No_of_seqs 112 out of 1552
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 23:54:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iij_A Coilin-interacting nucl 100.0 2.1E-29 7.2E-34 176.0 15.5 167 4-171 8-174 (180)
2 1y63_A LMAJ004144AAA protein; 100.0 5.6E-28 1.9E-32 169.5 16.3 167 5-172 8-179 (184)
3 3vaa_A Shikimate kinase, SK; s 99.9 3E-21 1E-25 136.7 12.1 156 5-170 23-195 (199)
4 3trf_A Shikimate kinase, SK; a 99.8 2E-20 6.7E-25 130.8 11.6 155 6-170 4-174 (185)
5 3nwj_A ATSK2; P loop, shikimat 99.8 1.4E-20 4.9E-25 137.5 7.9 153 7-171 48-237 (250)
6 1via_A Shikimate kinase; struc 99.8 9.1E-20 3.1E-24 126.5 10.6 152 7-169 4-165 (175)
7 3kb2_A SPBC2 prophage-derived 99.8 4.8E-19 1.6E-23 122.1 13.7 143 7-171 1-167 (173)
8 1zuh_A Shikimate kinase; alpha 99.8 2.2E-19 7.4E-24 123.7 11.4 148 5-162 5-164 (168)
9 4i1u_A Dephospho-COA kinase; s 99.8 3.5E-19 1.2E-23 126.4 12.4 156 5-169 7-203 (210)
10 2iyv_A Shikimate kinase, SK; t 99.8 1E-19 3.5E-24 127.1 9.4 153 8-170 3-168 (184)
11 1e6c_A Shikimate kinase; phosp 99.8 1.2E-18 4.1E-23 120.3 13.1 152 7-168 2-168 (173)
12 1kht_A Adenylate kinase; phosp 99.8 2.3E-18 8E-23 120.5 13.3 158 7-168 3-191 (192)
13 3fdi_A Uncharacterized protein 99.8 6.1E-18 2.1E-22 119.9 14.1 155 6-170 5-198 (201)
14 2pt5_A Shikimate kinase, SK; a 99.8 3.3E-18 1.1E-22 117.6 11.3 147 9-169 2-162 (168)
15 1kag_A SKI, shikimate kinase I 99.8 5.9E-19 2E-23 122.0 7.5 153 6-168 3-170 (173)
16 1jjv_A Dephospho-COA kinase; P 99.8 2.2E-17 7.6E-22 117.2 14.0 149 8-170 3-199 (206)
17 3t61_A Gluconokinase; PSI-biol 99.8 5.3E-18 1.8E-22 120.1 10.2 151 6-166 17-178 (202)
18 1qf9_A UMP/CMP kinase, protein 99.8 3.8E-17 1.3E-21 114.5 14.3 112 1-115 1-132 (194)
19 2c95_A Adenylate kinase 1; tra 99.7 2.8E-17 9.5E-22 115.5 12.7 159 4-165 6-191 (196)
20 3lw7_A Adenylate kinase relate 99.7 7E-17 2.4E-21 111.3 14.3 153 8-167 2-176 (179)
21 3umf_A Adenylate kinase; rossm 99.7 1.8E-17 6.1E-22 118.5 11.6 110 4-115 26-154 (217)
22 4eun_A Thermoresistant glucoki 99.7 1.6E-17 5.4E-22 117.6 11.0 151 5-170 27-193 (200)
23 1cke_A CK, MSSA, protein (cyti 99.7 6.6E-17 2.3E-21 116.2 14.3 38 7-45 5-42 (227)
24 3ake_A Cytidylate kinase; CMP 99.7 2.6E-16 9.1E-21 111.5 16.7 145 9-163 4-204 (208)
25 2grj_A Dephospho-COA kinase; T 99.7 3.5E-17 1.2E-21 115.1 11.9 143 6-168 11-187 (192)
26 2bwj_A Adenylate kinase 5; pho 99.7 3.8E-17 1.3E-21 115.1 12.0 157 6-165 11-194 (199)
27 2h92_A Cytidylate kinase; ross 99.7 5.6E-16 1.9E-20 110.8 18.3 153 7-172 3-219 (219)
28 3hdt_A Putative kinase; struct 99.7 9.7E-17 3.3E-21 115.3 14.1 155 7-170 14-218 (223)
29 2rhm_A Putative kinase; P-loop 99.7 4.5E-18 1.5E-22 119.3 6.5 111 4-115 2-126 (193)
30 1zd8_A GTP:AMP phosphotransfer 99.7 8.6E-17 3E-21 115.9 13.3 112 1-114 1-128 (227)
31 4e22_A Cytidylate kinase; P-lo 99.7 2.1E-16 7.3E-21 115.7 15.2 38 6-44 26-63 (252)
32 2if2_A Dephospho-COA kinase; a 99.7 1.1E-16 3.7E-21 113.4 13.0 147 8-165 2-189 (204)
33 3r20_A Cytidylate kinase; stru 99.7 1E-16 3.4E-21 115.7 12.6 154 5-169 7-226 (233)
34 1tev_A UMP-CMP kinase; ploop, 99.7 4.7E-17 1.6E-21 114.2 10.3 158 6-165 2-192 (196)
35 3tlx_A Adenylate kinase 2; str 99.7 7.3E-17 2.5E-21 117.5 11.3 110 5-115 27-157 (243)
36 2cdn_A Adenylate kinase; phosp 99.7 1.1E-16 3.9E-21 113.2 11.8 110 5-116 18-149 (201)
37 1qhx_A CPT, protein (chloramph 99.7 7.1E-17 2.4E-21 111.9 10.3 149 7-168 3-176 (178)
38 3cm0_A Adenylate kinase; ATP-b 99.7 4.1E-17 1.4E-21 113.9 9.1 108 5-115 2-127 (186)
39 3dl0_A Adenylate kinase; phosp 99.7 2.1E-16 7.1E-21 112.9 13.0 105 9-114 2-127 (216)
40 2vli_A Antibiotic resistance p 99.7 4E-16 1.4E-20 108.5 13.9 154 5-170 3-171 (183)
41 3sr0_A Adenylate kinase; phosp 99.7 5E-16 1.7E-20 110.3 14.3 106 8-115 1-125 (206)
42 1vht_A Dephospho-COA kinase; s 99.7 6.8E-16 2.3E-20 110.4 14.3 149 6-168 3-195 (218)
43 2f6r_A COA synthase, bifunctio 99.7 3.7E-16 1.3E-20 116.1 13.3 153 6-168 74-269 (281)
44 1nks_A Adenylate kinase; therm 99.7 6.9E-16 2.4E-20 108.0 13.8 159 7-168 1-193 (194)
45 1uj2_A Uridine-cytidine kinase 99.7 1.7E-16 5.9E-21 116.1 11.0 107 6-115 21-172 (252)
46 1knq_A Gluconate kinase; ALFA/ 99.7 4.6E-16 1.6E-20 107.6 12.4 154 5-169 6-172 (175)
47 3fb4_A Adenylate kinase; psych 99.7 9.2E-17 3.1E-21 114.7 9.1 104 9-114 2-127 (216)
48 2jaq_A Deoxyguanosine kinase; 99.7 2.1E-16 7.1E-21 111.6 10.5 72 93-165 124-198 (205)
49 1ukz_A Uridylate kinase; trans 99.7 3.5E-16 1.2E-20 110.6 11.6 110 5-115 13-142 (203)
50 2qt1_A Nicotinamide riboside k 99.7 3.8E-15 1.3E-19 105.7 16.8 160 5-170 19-205 (207)
51 1zak_A Adenylate kinase; ATP:A 99.7 1.5E-15 5E-20 109.0 14.2 109 5-115 3-130 (222)
52 1q3t_A Cytidylate kinase; nucl 99.7 1.8E-15 6.2E-20 109.6 14.4 40 5-45 14-53 (236)
53 1aky_A Adenylate kinase; ATP:A 99.7 1.7E-15 5.8E-20 108.5 13.1 109 5-115 2-133 (220)
54 3be4_A Adenylate kinase; malar 99.7 4.1E-16 1.4E-20 111.6 9.5 108 6-115 4-133 (217)
55 1uf9_A TT1252 protein; P-loop, 99.7 1.8E-15 6E-20 106.8 12.2 151 5-166 6-192 (203)
56 1ak2_A Adenylate kinase isoenz 99.6 7.6E-15 2.6E-19 106.1 14.9 109 5-115 14-144 (233)
57 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 6.4E-16 2.2E-20 113.6 9.3 149 5-169 2-172 (260)
58 2qor_A Guanylate kinase; phosp 99.6 6.7E-15 2.3E-19 104.3 13.0 110 4-116 9-149 (204)
59 2xb4_A Adenylate kinase; ATP-b 99.6 7.7E-15 2.6E-19 105.4 13.0 105 9-115 2-127 (223)
60 3gmt_A Adenylate kinase; ssgci 99.6 4.3E-15 1.5E-19 106.7 11.2 108 6-115 7-132 (230)
61 2pbr_A DTMP kinase, thymidylat 99.6 1.6E-14 5.4E-19 101.2 13.2 150 8-165 1-189 (195)
62 1nn5_A Similar to deoxythymidy 99.6 8.4E-15 2.9E-19 104.2 10.9 32 4-36 6-37 (215)
63 2plr_A DTMP kinase, probable t 99.6 1.8E-14 6.1E-19 102.2 12.4 30 5-35 2-31 (213)
64 2z0h_A DTMP kinase, thymidylat 99.6 5.8E-15 2E-19 103.7 9.7 149 9-170 2-191 (197)
65 4eaq_A DTMP kinase, thymidylat 99.6 3.4E-15 1.2E-19 107.8 8.1 154 4-166 23-223 (229)
66 1e4v_A Adenylate kinase; trans 99.6 5.7E-14 2E-18 100.2 14.3 106 9-115 2-124 (214)
67 2v54_A DTMP kinase, thymidylat 99.6 2.9E-14 1E-18 100.6 12.4 149 5-166 2-189 (204)
68 2wwf_A Thymidilate kinase, put 99.6 3.3E-15 1.1E-19 106.1 5.4 35 4-39 7-41 (212)
69 2pez_A Bifunctional 3'-phospho 99.5 2.4E-15 8.3E-20 104.4 4.0 153 5-170 3-175 (179)
70 1ly1_A Polynucleotide kinase; 99.5 5.1E-15 1.8E-19 102.5 5.4 106 8-115 3-127 (181)
71 4hlc_A DTMP kinase, thymidylat 99.5 6.1E-14 2.1E-18 99.5 10.2 155 7-165 2-198 (205)
72 3uie_A Adenylyl-sulfate kinase 99.5 1.3E-13 4.5E-18 97.3 10.8 145 5-170 23-194 (200)
73 1x6v_B Bifunctional 3'-phospho 99.5 5.5E-14 1.9E-18 113.9 7.9 152 5-171 50-223 (630)
74 2yvu_A Probable adenylyl-sulfa 99.5 1E-13 3.4E-18 96.8 8.3 150 5-170 11-183 (186)
75 3v9p_A DTMP kinase, thymidylat 99.5 4.8E-14 1.6E-18 101.5 6.3 159 4-166 22-225 (227)
76 4edh_A DTMP kinase, thymidylat 99.5 6.9E-13 2.4E-17 94.6 10.8 158 5-166 4-205 (213)
77 3lv8_A DTMP kinase, thymidylat 99.4 3.5E-13 1.2E-17 97.5 8.6 160 4-167 24-228 (236)
78 1zp6_A Hypothetical protein AT 99.4 9.1E-13 3.1E-17 92.0 9.3 153 4-170 6-175 (191)
79 4tmk_A Protein (thymidylate ki 99.4 1.7E-12 5.8E-17 92.6 10.5 158 6-167 2-206 (213)
80 3ld9_A DTMP kinase, thymidylat 99.4 3.5E-13 1.2E-17 96.6 6.6 153 5-167 19-215 (223)
81 3tau_A Guanylate kinase, GMP k 99.4 1.4E-12 4.7E-17 92.7 7.6 28 5-32 6-33 (208)
82 3tr0_A Guanylate kinase, GMP k 99.4 1.3E-11 4.5E-16 87.0 12.2 29 4-32 4-32 (205)
83 3hjn_A DTMP kinase, thymidylat 99.4 4.9E-12 1.7E-16 89.2 9.8 153 8-169 1-190 (197)
84 1ex7_A Guanylate kinase; subst 99.3 8.5E-12 2.9E-16 87.0 10.5 25 8-32 2-26 (186)
85 2bbw_A Adenylate kinase 4, AK4 99.3 3E-11 1E-15 87.8 13.9 108 6-114 26-148 (246)
86 3tmk_A Thymidylate kinase; pho 99.3 2.8E-12 9.6E-17 91.5 8.2 158 4-167 2-202 (216)
87 1m7g_A Adenylylsulfate kinase; 99.3 7.4E-13 2.5E-17 94.2 5.1 99 5-111 23-149 (211)
88 2ze6_A Isopentenyl transferase 99.3 2.2E-12 7.6E-17 94.3 7.4 35 8-43 2-36 (253)
89 1a7j_A Phosphoribulokinase; tr 99.3 4.5E-12 1.5E-16 94.4 8.5 39 6-44 4-46 (290)
90 1ltq_A Polynucleotide kinase; 99.3 7.3E-13 2.5E-17 99.0 4.1 104 8-115 3-127 (301)
91 1gvn_B Zeta; postsegregational 99.3 8.2E-11 2.8E-15 87.5 15.0 107 5-114 31-162 (287)
92 3zvl_A Bifunctional polynucleo 99.3 5.7E-12 1.9E-16 98.3 8.8 92 5-115 256-358 (416)
93 1m8p_A Sulfate adenylyltransfe 99.3 9.6E-13 3.3E-17 106.3 4.6 150 6-170 395-566 (573)
94 2gks_A Bifunctional SAT/APS ki 99.3 1.4E-12 4.8E-17 104.8 5.3 146 6-169 371-539 (546)
95 1p5z_B DCK, deoxycytidine kina 99.3 2.4E-11 8.2E-16 89.2 10.0 34 5-38 22-55 (263)
96 3asz_A Uridine kinase; cytidin 99.3 9.8E-11 3.4E-15 83.0 12.6 40 5-44 4-44 (211)
97 2bdt_A BH3686; alpha-beta prot 99.3 6.8E-11 2.3E-15 82.4 11.5 148 8-165 3-168 (189)
98 3ch4_B Pmkase, phosphomevalona 99.2 5.7E-12 2E-16 88.5 4.9 153 6-170 10-192 (202)
99 3c8u_A Fructokinase; YP_612366 99.2 1.6E-10 5.4E-15 81.9 11.9 110 5-114 20-168 (208)
100 2vp4_A Deoxynucleoside kinase; 99.2 4.3E-11 1.5E-15 86.2 9.0 75 92-167 145-224 (230)
101 1rz3_A Hypothetical protein rb 99.2 2.1E-11 7.1E-16 86.1 7.2 108 5-115 20-165 (201)
102 3cr8_A Sulfate adenylyltranfer 99.2 1.4E-11 4.9E-16 98.9 6.0 153 6-170 368-539 (552)
103 2ocp_A DGK, deoxyguanosine kin 99.2 1.9E-10 6.6E-15 83.3 11.1 78 93-171 149-237 (241)
104 2p5t_B PEZT; postsegregational 99.2 7.4E-11 2.5E-15 86.2 8.7 110 5-114 30-157 (253)
105 3a00_A Guanylate kinase, GMP k 99.2 1E-10 3.5E-15 81.5 8.6 25 8-32 2-26 (186)
106 2j41_A Guanylate kinase; GMP, 99.2 1.1E-10 3.8E-15 82.3 8.1 27 5-31 4-30 (207)
107 2jeo_A Uridine-cytidine kinase 99.1 5E-10 1.7E-14 81.3 10.9 30 5-35 23-52 (245)
108 3a8t_A Adenylate isopentenyltr 99.1 2.5E-10 8.7E-15 86.1 8.1 35 7-42 40-74 (339)
109 3tqc_A Pantothenate kinase; bi 99.1 1.3E-09 4.6E-14 82.0 11.2 107 6-115 91-248 (321)
110 1dek_A Deoxynucleoside monopho 99.1 4.7E-11 1.6E-15 86.5 3.1 37 8-45 2-38 (241)
111 1kgd_A CASK, peripheral plasma 99.1 5.3E-10 1.8E-14 77.5 7.6 27 6-32 4-30 (180)
112 3lnc_A Guanylate kinase, GMP k 99.0 2.2E-10 7.6E-15 82.4 5.6 26 6-31 26-52 (231)
113 1sq5_A Pantothenate kinase; P- 99.0 7E-09 2.4E-13 77.8 12.6 39 5-43 78-122 (308)
114 3ney_A 55 kDa erythrocyte memb 99.0 2.5E-09 8.4E-14 75.1 8.8 28 5-32 17-44 (197)
115 2axn_A 6-phosphofructo-2-kinas 99.0 2.1E-09 7.3E-14 86.0 9.1 40 6-46 34-78 (520)
116 1g8f_A Sulfate adenylyltransfe 99.0 2.1E-09 7.2E-14 85.5 8.9 35 6-41 394-435 (511)
117 3d3q_A TRNA delta(2)-isopenten 98.9 6.6E-10 2.3E-14 84.1 3.7 41 1-42 1-41 (340)
118 1gtv_A TMK, thymidylate kinase 98.9 3.9E-11 1.3E-15 85.1 -2.9 25 8-32 1-25 (214)
119 4b4t_M 26S protease regulatory 98.8 9E-09 3.1E-13 80.4 7.4 32 6-38 214-245 (434)
120 3crm_A TRNA delta(2)-isopenten 98.8 2.7E-09 9.3E-14 80.2 4.2 35 8-43 6-40 (323)
121 4b4t_J 26S protease regulatory 98.8 6.9E-09 2.4E-13 80.1 5.1 32 6-38 181-212 (405)
122 1p6x_A Thymidine kinase; P-loo 98.7 8.9E-09 3.1E-13 77.8 5.1 29 4-32 4-32 (334)
123 1lvg_A Guanylate kinase, GMP k 98.7 2.6E-07 8.7E-12 64.9 11.9 27 5-31 2-28 (198)
124 4b4t_L 26S protease subunit RP 98.7 1.3E-08 4.5E-13 79.5 5.1 32 6-38 214-245 (437)
125 4b4t_I 26S protease regulatory 98.7 1.6E-08 5.5E-13 78.5 5.3 32 6-38 215-246 (437)
126 4b4t_K 26S protease regulatory 98.7 3E-08 1E-12 77.4 6.2 32 6-38 205-236 (428)
127 1bif_A 6-phosphofructo-2-kinas 98.7 1.4E-07 4.9E-12 74.5 10.2 39 6-45 38-81 (469)
128 3foz_A TRNA delta(2)-isopenten 98.7 1.8E-08 6.2E-13 75.2 4.5 36 6-42 9-44 (316)
129 3aez_A Pantothenate kinase; tr 98.6 2.8E-07 9.6E-12 69.2 10.0 38 5-42 88-131 (312)
130 3exa_A TRNA delta(2)-isopenten 98.6 2.7E-08 9.3E-13 74.4 4.2 36 6-42 2-37 (322)
131 4b4t_H 26S protease regulatory 98.6 2.5E-08 8.6E-13 78.1 4.1 33 5-38 241-273 (467)
132 3cf2_A TER ATPase, transitiona 98.5 3.8E-07 1.3E-11 76.1 8.7 34 5-39 236-269 (806)
133 3t15_A Ribulose bisphosphate c 98.5 1.4E-07 4.9E-12 70.1 4.5 33 5-38 34-66 (293)
134 3cf2_A TER ATPase, transitiona 98.4 2.3E-07 8E-12 77.4 4.1 32 6-38 510-541 (806)
135 2qz4_A Paraplegin; AAA+, SPG7, 98.3 3.9E-07 1.3E-11 66.2 4.6 32 6-38 38-69 (262)
136 1lv7_A FTSH; alpha/beta domain 98.3 4.3E-07 1.5E-11 66.0 4.7 31 7-38 45-75 (257)
137 3cf0_A Transitional endoplasmi 98.3 4.8E-07 1.6E-11 67.5 4.9 33 6-39 48-80 (301)
138 3eph_A TRNA isopentenyltransfe 98.3 3.2E-07 1.1E-11 70.8 3.7 34 7-41 2-35 (409)
139 3b9p_A CG5977-PA, isoform A; A 98.3 5.8E-07 2E-11 66.6 4.9 32 6-38 53-84 (297)
140 3h4m_A Proteasome-activating n 98.3 5.8E-07 2E-11 66.2 4.8 33 5-38 49-81 (285)
141 3hws_A ATP-dependent CLP prote 98.3 6.1E-07 2.1E-11 68.6 4.8 33 6-39 50-82 (363)
142 1g41_A Heat shock protein HSLU 98.3 8.1E-07 2.8E-11 69.6 5.3 35 6-41 49-83 (444)
143 3eie_A Vacuolar protein sortin 98.3 7.8E-07 2.7E-11 66.9 4.6 31 7-38 51-81 (322)
144 1s96_A Guanylate kinase, GMP k 98.3 7.9E-07 2.7E-11 63.4 4.3 29 4-32 13-41 (219)
145 2x8a_A Nuclear valosin-contain 98.2 8.2E-07 2.8E-11 65.4 4.2 30 8-38 45-74 (274)
146 1d2n_A N-ethylmaleimide-sensit 98.2 6.5E-07 2.2E-11 65.6 3.4 33 6-39 63-95 (272)
147 1um8_A ATP-dependent CLP prote 98.2 1.1E-06 3.8E-11 67.4 4.8 33 6-39 71-103 (376)
148 1xwi_A SKD1 protein; VPS4B, AA 98.2 1.3E-06 4.4E-11 65.8 4.8 31 7-38 45-76 (322)
149 1ofh_A ATP-dependent HSL prote 98.2 1.1E-06 3.9E-11 65.2 4.5 32 6-38 49-80 (310)
150 2qmh_A HPR kinase/phosphorylas 98.2 1.1E-06 3.7E-11 61.6 3.7 35 6-42 33-67 (205)
151 2qp9_X Vacuolar protein sortin 98.2 1.3E-06 4.6E-11 66.6 4.6 31 7-38 84-114 (355)
152 1np6_A Molybdopterin-guanine d 98.2 1.2E-06 4E-11 60.3 3.8 27 5-31 4-30 (174)
153 1jbk_A CLPB protein; beta barr 98.2 1.7E-06 5.9E-11 59.3 4.6 26 6-31 42-67 (195)
154 3czq_A Putative polyphosphate 98.2 2E-05 6.7E-10 58.6 10.4 27 6-32 85-111 (304)
155 2ga8_A Hypothetical 39.9 kDa p 98.2 4.1E-07 1.4E-11 69.2 1.3 29 7-36 24-52 (359)
156 1ye8_A Protein THEP1, hypothet 98.2 1.1E-06 3.9E-11 60.6 3.3 28 8-36 1-28 (178)
157 2r62_A Cell division protease 98.2 5.5E-07 1.9E-11 65.8 1.7 31 7-38 44-74 (268)
158 1xjc_A MOBB protein homolog; s 98.2 1.4E-06 4.8E-11 59.6 3.6 27 5-31 2-28 (169)
159 3d8b_A Fidgetin-like protein 1 98.1 2E-06 6.8E-11 65.7 4.8 32 6-38 116-147 (357)
160 1ixz_A ATP-dependent metallopr 98.1 1.8E-06 6.1E-11 62.6 4.3 30 8-38 50-79 (254)
161 2p65_A Hypothetical protein PF 98.1 1.5E-06 5.2E-11 59.4 3.7 26 6-31 42-67 (187)
162 3ec2_A DNA replication protein 98.1 1.2E-06 4.1E-11 60.3 3.1 38 6-43 37-79 (180)
163 3pfi_A Holliday junction ATP-d 98.1 2.3E-06 7.9E-11 64.5 4.7 33 6-39 54-86 (338)
164 3syl_A Protein CBBX; photosynt 98.1 2.9E-06 1E-10 63.1 5.2 26 6-31 66-91 (309)
165 1odf_A YGR205W, hypothetical 3 98.1 1.6E-06 5.3E-11 64.5 3.5 40 5-44 29-75 (290)
166 1in4_A RUVB, holliday junction 98.1 2.4E-06 8.1E-11 64.7 4.5 29 7-36 51-79 (334)
167 3vfd_A Spastin; ATPase, microt 98.1 3E-06 1E-10 65.3 5.0 31 7-38 148-178 (389)
168 1tue_A Replication protein E1; 98.1 2E-06 6.8E-11 60.5 3.3 32 7-39 58-89 (212)
169 3n70_A Transport activator; si 98.1 2.9E-06 1E-10 56.4 4.0 26 6-31 23-48 (145)
170 1z6g_A Guanylate kinase; struc 98.1 2.8E-06 9.4E-11 60.5 3.9 27 5-31 21-47 (218)
171 1sxj_A Activator 1 95 kDa subu 98.1 3.4E-06 1.2E-10 67.4 4.9 32 7-39 77-108 (516)
172 1iy2_A ATP-dependent metallopr 98.1 3.2E-06 1.1E-10 62.2 4.3 31 8-39 74-104 (278)
173 4gp7_A Metallophosphoesterase; 98.1 2.4E-06 8.1E-11 58.5 3.3 35 6-43 8-42 (171)
174 2zan_A Vacuolar protein sortin 98.1 3.9E-06 1.3E-10 65.9 4.9 31 7-38 167-198 (444)
175 3tqf_A HPR(Ser) kinase; transf 98.1 3.4E-06 1.2E-10 57.7 3.9 34 7-42 16-49 (181)
176 2ce7_A Cell division protein F 98.0 3.6E-06 1.2E-10 66.6 4.5 31 7-38 49-79 (476)
177 1l8q_A Chromosomal replication 98.0 3.8E-06 1.3E-10 63.1 4.2 36 6-42 36-76 (324)
178 1znw_A Guanylate kinase, GMP k 98.0 4.1E-06 1.4E-10 59.0 4.0 28 5-32 18-45 (207)
179 3bos_A Putative DNA replicatio 98.0 3.4E-06 1.2E-10 60.1 3.6 38 6-43 51-92 (242)
180 1kjw_A Postsynaptic density pr 98.0 4.5E-05 1.5E-09 56.7 9.7 25 5-32 103-127 (295)
181 3pvs_A Replication-associated 98.0 5.5E-06 1.9E-10 65.1 4.8 31 7-38 50-80 (447)
182 3hu3_A Transitional endoplasmi 98.0 6.2E-06 2.1E-10 65.5 4.9 33 6-39 237-269 (489)
183 2w58_A DNAI, primosome compone 98.0 4.5E-06 1.5E-10 58.3 3.5 37 8-44 55-95 (202)
184 2kjq_A DNAA-related protein; s 98.0 3.7E-06 1.3E-10 56.3 2.9 26 6-31 35-60 (149)
185 1svm_A Large T antigen; AAA+ f 98.0 7.1E-06 2.4E-10 63.1 4.6 33 5-38 167-199 (377)
186 3tvt_A Disks large 1 tumor sup 98.0 3.4E-05 1.1E-09 57.3 8.0 24 6-32 99-122 (292)
187 1c9k_A COBU, adenosylcobinamid 97.9 4.1E-06 1.4E-10 57.8 2.8 26 9-36 1-26 (180)
188 2f1r_A Molybdopterin-guanine d 97.9 2.1E-06 7.1E-11 58.9 1.2 26 7-32 2-27 (171)
189 1hqc_A RUVB; extended AAA-ATPa 97.9 6.2E-06 2.1E-10 61.7 3.7 31 7-38 38-68 (324)
190 3te6_A Regulatory protein SIR3 97.9 5.3E-06 1.8E-10 62.3 3.2 27 5-31 43-69 (318)
191 2chg_A Replication factor C sm 97.9 7.1E-06 2.4E-10 57.5 3.6 25 7-31 38-62 (226)
192 2v1u_A Cell division control p 97.9 7.4E-06 2.5E-10 62.4 3.9 27 5-31 42-68 (387)
193 3uk6_A RUVB-like 2; hexameric 97.9 6.4E-06 2.2E-10 62.7 3.5 26 7-32 70-95 (368)
194 2dhr_A FTSH; AAA+ protein, hex 97.9 9.1E-06 3.1E-10 64.7 4.4 31 7-38 64-94 (499)
195 2r44_A Uncharacterized protein 97.9 6.6E-06 2.3E-10 61.9 3.4 30 8-38 47-76 (331)
196 3m6a_A ATP-dependent protease 97.9 9.3E-06 3.2E-10 65.3 4.4 32 6-38 107-138 (543)
197 2c9o_A RUVB-like 1; hexameric 97.9 7.4E-06 2.5E-10 64.5 3.7 26 7-32 63-88 (456)
198 2qby_B CDC6 homolog 3, cell di 97.9 1.1E-05 3.8E-10 61.6 4.5 26 6-31 44-69 (384)
199 3pxg_A Negative regulator of g 97.9 9.5E-06 3.2E-10 64.1 4.2 26 6-31 200-225 (468)
200 4fcw_A Chaperone protein CLPB; 97.9 9.2E-06 3.1E-10 60.4 3.8 24 8-31 48-71 (311)
201 3u61_B DNA polymerase accessor 97.9 1.1E-05 3.6E-10 60.5 4.2 32 7-39 48-79 (324)
202 1ypw_A Transitional endoplasmi 97.9 9.8E-06 3.3E-10 68.1 4.3 34 5-39 236-269 (806)
203 1htw_A HI0065; nucleotide-bind 97.9 9.7E-06 3.3E-10 54.8 3.5 28 5-32 31-58 (158)
204 1njg_A DNA polymerase III subu 97.9 9.5E-06 3.2E-10 57.5 3.5 25 8-32 46-70 (250)
205 1nij_A Hypothetical protein YJ 97.8 5.7E-06 2E-10 62.2 2.3 27 5-31 2-28 (318)
206 2qby_A CDC6 homolog 1, cell di 97.8 1.3E-05 4.6E-10 60.9 4.4 26 6-31 44-69 (386)
207 1fnn_A CDC6P, cell division co 97.8 1.6E-05 5.3E-10 60.8 4.4 24 8-31 45-68 (389)
208 3co5_A Putative two-component 97.8 3.7E-06 1.3E-10 55.7 0.8 26 6-31 26-51 (143)
209 2ehv_A Hypothetical protein PH 97.8 1.3E-05 4.4E-10 57.6 3.6 23 6-28 29-51 (251)
210 3tif_A Uncharacterized ABC tra 97.8 1.1E-05 3.7E-10 58.1 3.2 27 5-31 29-55 (235)
211 2eyu_A Twitching motility prot 97.8 1.1E-05 3.8E-10 59.0 3.3 26 6-31 24-49 (261)
212 2i3b_A HCR-ntpase, human cance 97.8 1.4E-05 4.8E-10 55.6 3.5 24 8-31 2-25 (189)
213 2orw_A Thymidine kinase; TMTK, 97.8 1.5E-05 5E-10 55.2 3.6 25 7-31 3-27 (184)
214 1sxj_C Activator 1 40 kDa subu 97.8 1.3E-05 4.5E-10 60.6 3.5 25 8-32 47-71 (340)
215 2v9p_A Replication protein E1; 97.8 1.5E-05 5.2E-10 59.5 3.7 32 5-37 124-155 (305)
216 1rj9_A FTSY, signal recognitio 97.8 2E-05 6.8E-10 58.9 4.3 26 6-31 101-126 (304)
217 2pcj_A ABC transporter, lipopr 97.8 1.4E-05 4.6E-10 57.2 3.0 26 6-31 29-54 (224)
218 3pxi_A Negative regulator of g 97.8 1.8E-05 6.3E-10 66.0 4.2 27 5-31 199-225 (758)
219 2r2a_A Uncharacterized protein 97.8 2.4E-05 8.1E-10 54.9 4.1 25 6-30 4-28 (199)
220 1e2k_A Thymidine kinase; trans 97.7 6.4E-06 2.2E-10 62.2 1.1 28 5-32 2-29 (331)
221 2cbz_A Multidrug resistance-as 97.7 1.6E-05 5.6E-10 57.2 3.2 25 6-30 30-54 (237)
222 2z4s_A Chromosomal replication 97.7 2E-05 6.9E-10 61.8 4.0 25 7-31 130-154 (440)
223 1sxj_D Activator 1 41 kDa subu 97.7 1.8E-05 6.1E-10 59.7 3.6 25 8-32 59-83 (353)
224 4a74_A DNA repair and recombin 97.7 1.4E-05 4.9E-10 56.6 2.9 26 6-31 24-49 (231)
225 2bjv_A PSP operon transcriptio 97.7 2.4E-05 8.3E-10 56.9 4.0 27 6-32 28-54 (265)
226 1of1_A Thymidine kinase; trans 97.7 8.7E-06 3E-10 62.3 1.6 28 5-32 47-74 (376)
227 2qgz_A Helicase loader, putati 97.7 2.1E-05 7.3E-10 58.8 3.6 38 7-44 152-194 (308)
228 2w0m_A SSO2452; RECA, SSPF, un 97.7 2.3E-05 7.9E-10 55.5 3.6 25 6-30 22-46 (235)
229 1sxj_E Activator 1 40 kDa subu 97.7 1.7E-05 6E-10 60.0 3.1 25 7-31 36-60 (354)
230 3czp_A Putative polyphosphate 97.7 0.00039 1.3E-08 55.3 10.8 28 5-32 41-68 (500)
231 1b0u_A Histidine permease; ABC 97.7 2.1E-05 7E-10 57.6 3.3 26 6-31 31-56 (262)
232 2onk_A Molybdate/tungstate ABC 97.7 2.4E-05 8.3E-10 56.4 3.6 24 8-31 25-48 (240)
233 2cvh_A DNA repair and recombin 97.7 2.6E-05 8.9E-10 54.9 3.7 36 5-40 18-54 (220)
234 3gfo_A Cobalt import ATP-bindi 97.7 1.9E-05 6.6E-10 58.1 3.1 26 6-31 33-58 (275)
235 1sgw_A Putative ABC transporte 97.7 2E-05 6.9E-10 55.9 3.0 26 6-31 34-59 (214)
236 1g8p_A Magnesium-chelatase 38 97.7 1.3E-05 4.6E-10 60.4 2.3 25 8-32 46-70 (350)
237 4g1u_C Hemin import ATP-bindin 97.7 2.2E-05 7.4E-10 57.6 3.2 26 6-31 36-61 (266)
238 2ff7_A Alpha-hemolysin translo 97.7 2.1E-05 7.3E-10 57.0 3.1 26 6-31 34-59 (247)
239 2d2e_A SUFC protein; ABC-ATPas 97.7 2.7E-05 9.2E-10 56.5 3.6 25 6-30 28-52 (250)
240 1iqp_A RFCS; clamp loader, ext 97.7 2.7E-05 9.3E-10 58.0 3.7 26 7-32 46-71 (327)
241 2olj_A Amino acid ABC transpor 97.7 2.4E-05 8.2E-10 57.2 3.3 26 6-31 49-74 (263)
242 3b85_A Phosphate starvation-in 97.7 2.2E-05 7.5E-10 55.5 3.0 24 7-30 22-45 (208)
243 2pze_A Cystic fibrosis transme 97.7 2.4E-05 8.2E-10 56.1 3.1 26 6-31 33-58 (229)
244 1u0j_A DNA replication protein 97.7 3.9E-05 1.3E-09 56.1 4.2 26 7-32 104-129 (267)
245 2ixe_A Antigen peptide transpo 97.7 2.5E-05 8.4E-10 57.4 3.2 26 6-31 44-69 (271)
246 3czp_A Putative polyphosphate 97.7 0.00049 1.7E-08 54.7 10.8 27 6-32 299-325 (500)
247 1mv5_A LMRA, multidrug resista 97.7 2.1E-05 7E-10 56.9 2.8 26 6-31 27-52 (243)
248 2zu0_C Probable ATP-dependent 97.7 3.2E-05 1.1E-09 56.7 3.8 25 6-30 45-69 (267)
249 2ghi_A Transport protein; mult 97.7 2.5E-05 8.6E-10 57.0 3.2 26 6-31 45-70 (260)
250 1vma_A Cell division protein F 97.7 2.6E-05 8.7E-10 58.3 3.3 26 6-31 103-128 (306)
251 1ji0_A ABC transporter; ATP bi 97.7 2.5E-05 8.5E-10 56.4 3.1 26 6-31 31-56 (240)
252 1vpl_A ABC transporter, ATP-bi 97.7 2.7E-05 9.2E-10 56.8 3.3 26 6-31 40-65 (256)
253 1g6h_A High-affinity branched- 97.7 2.5E-05 8.5E-10 57.0 3.1 26 6-31 32-57 (257)
254 3b9q_A Chloroplast SRP recepto 97.6 2.8E-05 9.5E-10 58.0 3.3 26 6-31 99-124 (302)
255 3rhf_A Putative polyphosphate 97.6 0.001 3.6E-08 48.9 11.5 27 6-32 74-100 (289)
256 3e70_C DPA, signal recognition 97.6 2.8E-05 9.6E-10 58.7 3.3 26 6-31 128-153 (328)
257 2lkc_A Translation initiation 97.6 4.9E-05 1.7E-09 51.4 4.3 28 3-30 4-31 (178)
258 2chq_A Replication factor C sm 97.6 3.3E-05 1.1E-09 57.3 3.7 25 7-31 38-62 (319)
259 2gza_A Type IV secretion syste 97.6 2.9E-05 1E-09 59.3 3.4 27 6-32 174-200 (361)
260 1lw7_A Transcriptional regulat 97.6 2.7E-05 9.4E-10 59.5 3.1 28 7-35 170-197 (365)
261 2qi9_C Vitamin B12 import ATP- 97.6 3E-05 1E-09 56.3 3.1 26 6-31 25-50 (249)
262 3fvq_A Fe(3+) IONS import ATP- 97.6 3.5E-05 1.2E-09 58.8 3.6 26 6-31 29-54 (359)
263 1ypw_A Transitional endoplasmi 97.6 1.6E-05 5.5E-10 66.8 1.8 32 6-38 510-541 (806)
264 2yz2_A Putative ABC transporte 97.6 3.2E-05 1.1E-09 56.6 3.2 26 6-31 32-57 (266)
265 1wms_A RAB-9, RAB9, RAS-relate 97.6 2.4E-05 8.2E-10 52.9 2.4 30 1-30 1-30 (177)
266 3jvv_A Twitching mobility prot 97.6 3.3E-05 1.1E-09 58.9 3.3 25 7-31 123-147 (356)
267 1n0w_A DNA repair protein RAD5 97.6 4E-05 1.4E-09 54.7 3.6 25 6-30 23-47 (243)
268 2ihy_A ABC transporter, ATP-bi 97.6 3.3E-05 1.1E-09 57.0 3.1 26 6-31 46-71 (279)
269 1osn_A Thymidine kinase, VZV-T 97.6 1.5E-05 5.2E-10 60.3 1.3 28 5-32 10-38 (341)
270 2qen_A Walker-type ATPase; unk 97.6 6.2E-05 2.1E-09 56.5 4.7 34 8-42 32-65 (350)
271 1jr3_A DNA polymerase III subu 97.6 4.3E-05 1.5E-09 58.1 3.7 25 8-32 39-63 (373)
272 3rlf_A Maltose/maltodextrin im 97.6 4.5E-05 1.5E-09 58.6 3.8 26 6-31 28-53 (381)
273 1knx_A Probable HPR(Ser) kinas 97.6 3.9E-05 1.3E-09 57.3 3.4 34 7-42 147-180 (312)
274 2nq2_C Hypothetical ABC transp 97.6 3.6E-05 1.2E-09 56.0 3.1 26 6-31 30-55 (253)
275 1r6b_X CLPA protein; AAA+, N-t 97.6 5.2E-05 1.8E-09 63.3 4.4 29 9-38 490-518 (758)
276 1cr0_A DNA primase/helicase; R 97.6 4.6E-05 1.6E-09 56.4 3.7 27 5-31 33-59 (296)
277 1sxj_B Activator 1 37 kDa subu 97.6 4.5E-05 1.5E-09 56.7 3.6 25 7-31 42-66 (323)
278 2ewv_A Twitching motility prot 97.6 3.6E-05 1.2E-09 59.1 3.1 26 6-31 135-160 (372)
279 2yyz_A Sugar ABC transporter, 97.6 4.7E-05 1.6E-09 58.1 3.7 26 6-31 28-53 (359)
280 2fh5_B SR-beta, signal recogni 97.6 4.8E-05 1.6E-09 53.3 3.5 30 1-30 1-30 (214)
281 2it1_A 362AA long hypothetical 97.6 5E-05 1.7E-09 58.0 3.8 26 6-31 28-53 (362)
282 2gf0_A GTP-binding protein DI- 97.6 4.9E-05 1.7E-09 52.4 3.5 30 1-30 2-31 (199)
283 1qvr_A CLPB protein; coiled co 97.6 4.7E-05 1.6E-09 64.4 4.0 26 6-31 190-215 (854)
284 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 3.4E-05 1.2E-09 61.4 2.9 26 7-32 41-66 (500)
285 2px0_A Flagellar biosynthesis 97.6 4.7E-05 1.6E-09 56.6 3.5 36 6-41 104-144 (296)
286 1v43_A Sugar-binding transport 97.6 5.3E-05 1.8E-09 58.1 3.8 26 6-31 36-61 (372)
287 1z47_A CYSA, putative ABC-tran 97.6 5E-05 1.7E-09 57.9 3.6 26 6-31 40-65 (355)
288 2og2_A Putative signal recogni 97.5 4.6E-05 1.6E-09 58.2 3.3 26 6-31 156-181 (359)
289 2dyk_A GTP-binding protein; GT 97.5 5E-05 1.7E-09 50.4 3.2 24 7-30 1-24 (161)
290 1ko7_A HPR kinase/phosphatase; 97.5 6.4E-05 2.2E-09 56.3 3.9 34 7-42 144-177 (314)
291 3tui_C Methionine import ATP-b 97.5 5.8E-05 2E-09 57.7 3.8 27 5-31 52-78 (366)
292 3sop_A Neuronal-specific septi 97.5 4.8E-05 1.6E-09 55.9 3.2 23 9-31 4-26 (270)
293 2xkx_A Disks large homolog 4; 97.5 0.0016 5.4E-08 54.2 12.5 24 6-32 530-553 (721)
294 2b8t_A Thymidine kinase; deoxy 97.5 5.4E-05 1.9E-09 54.0 3.2 27 5-31 10-36 (223)
295 2wsm_A Hydrogenase expression/ 97.5 5.5E-05 1.9E-09 53.3 3.3 26 6-31 29-54 (221)
296 1g29_1 MALK, maltose transport 97.5 6E-05 2.1E-09 57.8 3.6 26 6-31 28-53 (372)
297 2bbs_A Cystic fibrosis transme 97.5 5.2E-05 1.8E-09 56.3 3.1 26 6-31 63-88 (290)
298 3gd7_A Fusion complex of cysti 97.5 6.3E-05 2.2E-09 58.0 3.6 26 5-30 45-70 (390)
299 2yhs_A FTSY, cell division pro 97.5 5.5E-05 1.9E-09 59.9 3.3 26 6-31 292-317 (503)
300 2wji_A Ferrous iron transport 97.5 5E-05 1.7E-09 51.1 2.8 23 7-29 3-25 (165)
301 2wjg_A FEOB, ferrous iron tran 97.5 5.6E-05 1.9E-09 51.7 3.0 26 5-30 5-30 (188)
302 2ce2_X GTPase HRAS; signaling 97.5 5.2E-05 1.8E-09 50.4 2.8 24 7-30 3-26 (166)
303 3nh6_A ATP-binding cassette SU 97.5 3E-05 1E-09 58.0 1.7 27 5-31 78-104 (306)
304 1upt_A ARL1, ADP-ribosylation 97.5 7.6E-05 2.6E-09 50.1 3.6 27 4-30 4-30 (171)
305 1nlf_A Regulatory protein REPA 97.5 6.4E-05 2.2E-09 55.2 3.4 25 6-30 29-53 (279)
306 2pt7_A CAG-ALFA; ATPase, prote 97.5 4.8E-05 1.6E-09 57.4 2.8 26 7-32 171-196 (330)
307 2pjz_A Hypothetical protein ST 97.5 5.3E-05 1.8E-09 55.4 2.9 25 7-31 30-54 (263)
308 2fn4_A P23, RAS-related protei 97.5 6.3E-05 2.2E-09 50.9 3.1 25 6-30 8-32 (181)
309 3d31_A Sulfate/molybdate ABC t 97.5 4.3E-05 1.5E-09 58.1 2.5 26 6-31 25-50 (348)
310 2dr3_A UPF0273 protein PH0284; 97.5 8E-05 2.7E-09 53.2 3.8 25 6-30 22-46 (247)
311 2qm8_A GTPase/ATPase; G protei 97.5 6.7E-05 2.3E-09 56.8 3.4 27 5-31 53-79 (337)
312 2y8e_A RAB-protein 6, GH09086P 97.5 4.6E-05 1.6E-09 51.5 2.3 24 7-30 14-37 (179)
313 1p9r_A General secretion pathw 97.5 6.6E-05 2.3E-09 58.5 3.4 27 6-32 166-192 (418)
314 1ky3_A GTP-binding protein YPT 97.5 6.2E-05 2.1E-09 51.0 2.8 30 1-30 1-31 (182)
315 1nrj_B SR-beta, signal recogni 97.5 9.9E-05 3.4E-09 51.8 3.9 25 6-30 11-35 (218)
316 2www_A Methylmalonic aciduria 97.5 7E-05 2.4E-09 57.0 3.3 25 7-31 74-98 (349)
317 1kao_A RAP2A; GTP-binding prot 97.4 7.1E-05 2.4E-09 49.8 3.0 24 7-30 3-26 (167)
318 2npi_A Protein CLP1; CLP1-PCF1 97.4 7.9E-05 2.7E-09 58.7 3.5 26 6-31 137-162 (460)
319 1ojl_A Transcriptional regulat 97.4 0.00011 3.8E-09 54.8 4.1 26 6-31 24-49 (304)
320 3kta_A Chromosome segregation 97.4 0.0001 3.4E-09 50.5 3.6 25 8-32 27-51 (182)
321 1oix_A RAS-related protein RAB 97.4 8.5E-05 2.9E-09 51.3 3.3 23 8-30 30-52 (191)
322 2oap_1 GSPE-2, type II secreti 97.4 7.4E-05 2.5E-09 59.7 3.3 27 6-32 259-285 (511)
323 3kl4_A SRP54, signal recogniti 97.4 6.2E-05 2.1E-09 58.8 2.8 26 6-31 96-121 (433)
324 1xx6_A Thymidine kinase; NESG, 97.4 9.6E-05 3.3E-09 51.5 3.4 27 5-31 6-32 (191)
325 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00012 4.2E-09 61.0 4.6 26 6-31 206-231 (758)
326 2vhj_A Ntpase P4, P4; non- hyd 97.4 7E-05 2.4E-09 56.2 2.8 33 7-39 123-156 (331)
327 3p32_A Probable GTPase RV1496/ 97.4 8.3E-05 2.8E-09 56.6 3.3 27 5-31 77-103 (355)
328 1oxx_K GLCV, glucose, ABC tran 97.4 4.4E-05 1.5E-09 58.2 1.7 26 6-31 30-55 (353)
329 1zu4_A FTSY; GTPase, signal re 97.4 8.6E-05 2.9E-09 55.8 3.3 26 6-31 104-129 (320)
330 3k1j_A LON protease, ATP-depen 97.4 0.0001 3.5E-09 60.0 3.9 26 7-32 60-85 (604)
331 1a5t_A Delta prime, HOLB; zinc 97.4 0.00011 3.9E-09 55.4 3.8 26 7-32 24-49 (334)
332 3dm5_A SRP54, signal recogniti 97.4 8.4E-05 2.9E-09 58.2 3.1 37 6-42 99-139 (443)
333 3k53_A Ferrous iron transport 97.4 8.9E-05 3.1E-09 54.2 3.1 25 6-30 2-26 (271)
334 1u8z_A RAS-related protein RAL 97.4 9.1E-05 3.1E-09 49.3 2.9 25 6-30 3-27 (168)
335 2ged_A SR-beta, signal recogni 97.4 0.00014 4.9E-09 49.9 4.0 25 6-30 47-71 (193)
336 3clv_A RAB5 protein, putative; 97.4 0.00013 4.6E-09 50.1 3.8 26 5-30 5-30 (208)
337 2a9k_A RAS-related protein RAL 97.4 8.7E-05 3E-09 50.5 2.8 25 6-30 17-41 (187)
338 2f9l_A RAB11B, member RAS onco 97.4 0.00011 3.8E-09 50.9 3.3 24 7-30 5-28 (199)
339 3bwd_D RAC-like GTP-binding pr 97.4 0.00014 4.8E-09 49.3 3.8 26 5-30 6-31 (182)
340 2hf9_A Probable hydrogenase ni 97.4 0.00011 3.9E-09 51.9 3.4 26 6-31 37-62 (226)
341 1c1y_A RAS-related protein RAP 97.4 9.8E-05 3.4E-09 49.2 2.9 24 7-30 3-26 (167)
342 2hxs_A RAB-26, RAS-related pro 97.3 0.00013 4.5E-09 49.3 3.3 26 5-30 4-29 (178)
343 3pxi_A Negative regulator of g 97.3 0.00013 4.5E-09 60.9 3.9 23 9-31 523-545 (758)
344 1vg8_A RAS-related protein RAB 97.3 0.00011 3.8E-09 51.0 2.8 30 1-30 1-31 (207)
345 2gj8_A MNME, tRNA modification 97.3 0.00011 3.7E-09 49.9 2.7 25 6-30 3-27 (172)
346 2fna_A Conserved hypothetical 97.3 0.00016 5.5E-09 54.3 3.9 33 8-40 31-64 (357)
347 1z2a_A RAS-related protein RAB 97.3 0.00015 5.2E-09 48.4 3.3 25 6-30 4-28 (168)
348 2v3c_C SRP54, signal recogniti 97.3 0.00011 3.8E-09 57.4 3.0 35 7-41 99-137 (432)
349 2zej_A Dardarin, leucine-rich 97.3 0.00015 5.1E-09 49.6 3.2 22 8-29 3-24 (184)
350 3t5g_A GTP-binding protein RHE 97.3 8.8E-05 3E-09 50.4 2.0 25 5-29 4-28 (181)
351 1pzn_A RAD51, DNA repair and r 97.3 0.00012 4.1E-09 55.7 2.9 26 6-31 130-155 (349)
352 3tw8_B RAS-related protein RAB 97.3 0.0001 3.6E-09 49.8 2.3 24 6-29 8-31 (181)
353 2rcn_A Probable GTPase ENGC; Y 97.3 0.00016 5.6E-09 55.1 3.6 24 7-30 215-238 (358)
354 3q72_A GTP-binding protein RAD 97.3 0.00017 5.8E-09 48.1 3.3 22 7-28 2-23 (166)
355 2yv5_A YJEQ protein; hydrolase 97.3 0.00017 5.8E-09 53.7 3.6 25 7-32 165-189 (302)
356 2r8r_A Sensor protein; KDPD, P 97.3 0.00018 6.2E-09 51.3 3.5 26 6-31 5-30 (228)
357 3t1o_A Gliding protein MGLA; G 97.3 0.00011 3.8E-09 50.4 2.4 26 7-32 14-39 (198)
358 2iwr_A Centaurin gamma 1; ANK 97.3 0.00012 4.3E-09 49.5 2.5 25 6-30 6-30 (178)
359 1svi_A GTP-binding protein YSX 97.3 0.0002 6.8E-09 49.2 3.6 25 6-30 22-46 (195)
360 1yrb_A ATP(GTP)binding protein 97.3 0.00018 6E-09 52.1 3.5 27 5-31 12-38 (262)
361 3hr8_A Protein RECA; alpha and 97.3 0.00014 4.8E-09 55.4 3.0 26 6-31 60-85 (356)
362 3pqc_A Probable GTP-binding pr 97.3 0.00021 7.3E-09 48.9 3.7 25 6-30 22-46 (195)
363 1pui_A ENGB, probable GTP-bind 97.3 7.7E-05 2.6E-09 52.0 1.4 24 6-29 25-48 (210)
364 3bc1_A RAS-related protein RAB 97.2 0.00013 4.5E-09 49.8 2.5 24 7-30 11-34 (195)
365 2bme_A RAB4A, RAS-related prot 97.2 0.00014 4.9E-09 49.5 2.6 24 7-30 10-33 (186)
366 1qvr_A CLPB protein; coiled co 97.2 0.00016 5.5E-09 61.2 3.4 24 8-31 589-612 (854)
367 3e1s_A Exodeoxyribonuclease V, 97.2 0.00019 6.6E-09 58.1 3.7 25 7-31 204-228 (574)
368 3iby_A Ferrous iron transport 97.2 0.00018 6E-09 52.4 3.2 24 7-30 1-24 (256)
369 3ihw_A Centg3; RAS, centaurin, 97.2 0.0002 6.8E-09 49.1 3.3 26 5-30 18-43 (184)
370 3con_A GTPase NRAS; structural 97.2 0.00013 4.6E-09 49.9 2.4 25 6-30 20-44 (190)
371 2atv_A RERG, RAS-like estrogen 97.2 0.0002 6.9E-09 49.4 3.3 25 6-30 27-51 (196)
372 2zts_A Putative uncharacterize 97.2 0.00025 8.5E-09 50.7 3.9 25 5-29 28-52 (251)
373 2nzj_A GTP-binding protein REM 97.2 0.00017 5.7E-09 48.5 2.8 25 6-30 3-27 (175)
374 3oes_A GTPase rhebl1; small GT 97.2 0.00015 5.1E-09 50.3 2.6 25 6-30 23-47 (201)
375 1wf3_A GTP-binding protein; GT 97.2 0.00014 4.6E-09 54.3 2.5 30 1-30 1-30 (301)
376 1w5s_A Origin recognition comp 97.2 0.00017 5.7E-09 55.5 3.0 26 6-31 49-76 (412)
377 2p67_A LAO/AO transport system 97.2 0.00019 6.4E-09 54.4 3.2 27 5-31 54-80 (341)
378 3lda_A DNA repair protein RAD5 97.2 0.0002 6.9E-09 55.4 3.4 23 6-28 177-199 (400)
379 1ek0_A Protein (GTP-binding pr 97.2 0.00023 8E-09 47.4 3.3 23 8-30 4-26 (170)
380 3reg_A RHO-like small GTPase; 97.2 0.00015 5.1E-09 49.9 2.4 24 7-30 23-46 (194)
381 2cxx_A Probable GTP-binding pr 97.2 0.0002 6.8E-09 48.9 3.0 23 8-30 2-24 (190)
382 2bcg_Y Protein YP2, GTP-bindin 97.2 0.00016 5.3E-09 50.3 2.5 25 6-30 7-31 (206)
383 1z08_A RAS-related protein RAB 97.2 0.00025 8.5E-09 47.4 3.4 25 6-30 5-29 (170)
384 1ls1_A Signal recognition part 97.2 0.0002 6.9E-09 53.2 3.2 26 6-31 97-122 (295)
385 2zr9_A Protein RECA, recombina 97.2 0.00024 8.3E-09 54.0 3.7 35 6-40 60-98 (349)
386 3b5x_A Lipid A export ATP-bind 97.2 0.00021 7.2E-09 57.9 3.5 27 5-31 367-393 (582)
387 2qag_B Septin-6, protein NEDD5 97.2 0.00021 7E-09 55.7 3.3 25 6-30 39-65 (427)
388 1z0j_A RAB-22, RAS-related pro 97.2 0.00026 8.7E-09 47.3 3.4 24 7-30 6-29 (170)
389 1m2o_B GTP-binding protein SAR 97.2 0.00024 8.3E-09 48.9 3.4 26 5-30 21-46 (190)
390 1u0l_A Probable GTPase ENGC; p 97.2 0.00022 7.5E-09 53.1 3.3 25 7-31 169-193 (301)
391 1g16_A RAS-related protein SEC 97.2 0.00024 8.1E-09 47.5 3.2 23 8-30 4-26 (170)
392 3tkl_A RAS-related protein RAB 97.2 0.00024 8.2E-09 48.8 3.3 24 7-30 16-39 (196)
393 3tsz_A Tight junction protein 97.2 0.0059 2E-07 47.1 11.3 94 6-114 231-330 (391)
394 2erx_A GTP-binding protein DI- 97.2 0.00023 7.7E-09 47.6 3.1 23 7-29 3-25 (172)
395 3b60_A Lipid A export ATP-bind 97.2 0.0002 6.7E-09 58.1 3.1 28 5-32 367-394 (582)
396 2ew1_A RAS-related protein RAB 97.2 0.00017 5.9E-09 50.3 2.5 24 7-30 26-49 (201)
397 2dpy_A FLII, flagellum-specifi 97.2 0.0003 1E-08 55.1 4.0 28 5-32 155-182 (438)
398 3ozx_A RNAse L inhibitor; ATP 97.2 0.00023 7.8E-09 57.2 3.3 27 5-31 23-49 (538)
399 3upu_A ATP-dependent DNA helic 97.2 0.00024 8.1E-09 56.0 3.4 24 8-31 46-69 (459)
400 3f9v_A Minichromosome maintena 97.2 0.00012 4.1E-09 59.5 1.7 29 8-37 328-356 (595)
401 2obl_A ESCN; ATPase, hydrolase 97.2 0.00034 1.2E-08 53.2 4.0 27 6-32 70-96 (347)
402 3q85_A GTP-binding protein REM 97.2 0.00027 9.2E-09 47.3 3.2 22 8-29 3-24 (169)
403 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00028 9.5E-09 56.7 3.7 27 5-31 45-71 (538)
404 3bh0_A DNAB-like replicative h 97.2 0.00035 1.2E-08 52.3 4.1 26 5-30 66-91 (315)
405 3lxx_A GTPase IMAP family memb 97.1 0.00021 7E-09 51.2 2.7 25 6-30 28-52 (239)
406 2atx_A Small GTP binding prote 97.1 0.00023 7.9E-09 48.9 2.9 24 7-30 18-41 (194)
407 3kkq_A RAS-related protein M-R 97.1 0.00025 8.4E-09 48.2 2.9 24 7-30 18-41 (183)
408 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00021 7.2E-09 48.5 2.6 25 6-30 4-28 (186)
409 1tq4_A IIGP1, interferon-induc 97.1 0.00024 8E-09 55.3 3.0 24 7-30 69-92 (413)
410 1u94_A RECA protein, recombina 97.1 0.00033 1.1E-08 53.4 3.8 34 6-39 62-99 (356)
411 1r8s_A ADP-ribosylation factor 97.1 0.00033 1.1E-08 46.5 3.5 22 9-30 2-23 (164)
412 3euj_A Chromosome partition pr 97.1 0.00025 8.7E-09 56.1 3.2 24 8-31 30-53 (483)
413 1r2q_A RAS-related protein RAB 97.1 0.00032 1.1E-08 46.8 3.3 25 6-30 5-29 (170)
414 4dsu_A GTPase KRAS, isoform 2B 97.1 0.00032 1.1E-08 47.7 3.4 24 7-30 4-27 (189)
415 2bov_A RAla, RAS-related prote 97.1 0.00026 8.8E-09 49.0 2.9 25 6-30 13-37 (206)
416 3i8s_A Ferrous iron transport 97.1 0.00026 9E-09 51.9 2.9 25 6-30 2-26 (274)
417 2j37_W Signal recognition part 97.1 0.00026 8.9E-09 56.4 3.1 36 6-41 100-139 (504)
418 1z0f_A RAB14, member RAS oncog 97.1 0.00034 1.2E-08 47.1 3.3 24 7-30 15-38 (179)
419 1zcb_A G alpha I/13; GTP-bindi 97.1 0.00028 9.6E-09 53.9 3.1 28 5-32 31-58 (362)
420 1moz_A ARL1, ADP-ribosylation 97.1 0.00018 6.2E-09 48.8 1.9 24 5-28 16-39 (183)
421 3llu_A RAS-related GTP-binding 97.1 0.00028 9.7E-09 48.7 2.9 28 5-32 18-45 (196)
422 2z43_A DNA repair and recombin 97.1 0.00037 1.3E-08 52.4 3.7 26 6-31 106-131 (324)
423 1gwn_A RHO-related GTP-binding 97.1 0.00025 8.7E-09 49.5 2.6 24 7-30 28-51 (205)
424 4gzl_A RAS-related C3 botulinu 97.1 0.0003 1E-08 49.0 3.0 25 6-30 29-53 (204)
425 1z06_A RAS-related protein RAB 97.1 0.00028 9.6E-09 48.3 2.8 25 6-30 19-43 (189)
426 2j0v_A RAC-like GTP-binding pr 97.1 0.00032 1.1E-08 48.9 3.1 25 6-30 8-32 (212)
427 1ksh_A ARF-like protein 2; sma 97.1 0.0003 1E-08 47.9 3.0 25 5-29 16-40 (186)
428 1v5w_A DMC1, meiotic recombina 97.1 0.00032 1.1E-08 53.2 3.3 26 5-30 120-145 (343)
429 1fzq_A ADP-ribosylation factor 97.1 0.00032 1.1E-08 47.9 3.0 25 6-30 15-39 (181)
430 2xtp_A GTPase IMAP family memb 97.1 0.00031 1.1E-08 50.9 3.1 25 6-30 21-45 (260)
431 3qf4_B Uncharacterized ABC tra 97.1 0.00023 7.7E-09 58.0 2.6 28 5-32 379-406 (598)
432 3j16_B RLI1P; ribosome recycli 97.1 0.00036 1.2E-08 56.9 3.7 27 5-31 101-127 (608)
433 2yl4_A ATP-binding cassette SU 97.1 0.00021 7.3E-09 58.1 2.4 28 5-32 368-395 (595)
434 1m7b_A RND3/RHOE small GTP-bin 97.1 0.00035 1.2E-08 47.6 3.2 25 6-30 6-30 (184)
435 2p5s_A RAS and EF-hand domain 97.1 0.00034 1.2E-08 48.4 3.1 25 6-30 27-51 (199)
436 2oil_A CATX-8, RAS-related pro 97.1 0.00038 1.3E-08 47.8 3.3 24 7-30 25-48 (193)
437 1ni3_A YCHF GTPase, YCHF GTP-b 97.1 0.00048 1.7E-08 53.1 4.2 25 5-29 18-42 (392)
438 1zj6_A ADP-ribosylation factor 97.1 0.00034 1.2E-08 47.8 3.1 26 5-30 14-39 (187)
439 2efe_B Small GTP-binding prote 97.1 0.00042 1.4E-08 46.8 3.4 24 7-30 12-35 (181)
440 2g6b_A RAS-related protein RAB 97.1 0.00041 1.4E-08 46.9 3.3 24 7-30 10-33 (180)
441 1t9h_A YLOQ, probable GTPase E 97.0 0.00011 3.8E-09 54.9 0.5 25 6-30 172-196 (307)
442 3ozx_A RNAse L inhibitor; ATP 97.0 0.00032 1.1E-08 56.4 3.1 26 6-31 293-318 (538)
443 1j8m_F SRP54, signal recogniti 97.0 0.00026 8.9E-09 52.7 2.4 34 7-40 98-135 (297)
444 2fg5_A RAB-22B, RAS-related pr 97.0 0.00027 9.2E-09 48.6 2.3 25 6-30 22-46 (192)
445 4a82_A Cystic fibrosis transme 97.0 0.00018 6E-09 58.3 1.5 28 5-32 365-392 (578)
446 3dz8_A RAS-related protein RAB 97.0 0.00044 1.5E-08 47.4 3.3 24 7-30 23-46 (191)
447 2r6a_A DNAB helicase, replicat 97.0 0.00048 1.6E-08 54.2 3.9 26 5-30 201-226 (454)
448 1zd9_A ADP-ribosylation factor 97.0 0.00031 1.1E-08 48.1 2.6 25 6-30 21-45 (188)
449 2xxa_A Signal recognition part 97.0 0.00036 1.2E-08 54.6 3.2 36 6-41 99-139 (433)
450 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00046 1.6E-08 46.0 3.2 24 8-31 24-47 (149)
451 4djt_A GTP-binding nuclear pro 97.0 0.00011 3.7E-09 51.6 0.1 26 4-29 8-33 (218)
452 2fu5_C RAS-related protein RAB 97.0 0.00017 5.9E-09 49.0 1.2 23 7-29 8-30 (183)
453 2b6h_A ADP-ribosylation factor 97.0 0.00038 1.3E-08 48.0 2.9 25 5-29 27-51 (192)
454 2j9r_A Thymidine kinase; TK1, 97.0 0.00061 2.1E-08 48.2 3.9 27 5-31 26-52 (214)
455 2ffh_A Protein (FFH); SRP54, s 97.0 0.00039 1.3E-08 54.2 3.1 26 6-31 97-122 (425)
456 2gf9_A RAS-related protein RAB 97.0 0.00048 1.6E-08 47.1 3.3 24 7-30 22-45 (189)
457 1f6b_A SAR1; gtpases, N-termin 97.0 0.00033 1.1E-08 48.6 2.5 24 6-29 24-47 (198)
458 2h17_A ADP-ribosylation factor 97.0 0.00029 9.9E-09 47.9 2.1 25 6-30 20-44 (181)
459 3shw_A Tight junction protein 97.0 0.006 2E-07 48.1 9.8 90 6-109 223-318 (468)
460 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00048 1.6E-08 55.4 3.6 26 6-31 311-336 (538)
461 1tf7_A KAIC; homohexamer, hexa 97.0 0.00044 1.5E-08 55.4 3.4 22 6-27 38-59 (525)
462 2j1l_A RHO-related GTP-binding 97.0 0.00038 1.3E-08 48.9 2.7 24 6-29 33-56 (214)
463 4bas_A ADP-ribosylation factor 97.0 0.00037 1.3E-08 47.9 2.5 25 5-29 15-39 (199)
464 3qf4_A ABC transporter, ATP-bi 97.0 0.00026 8.9E-09 57.5 2.0 28 5-32 367-394 (587)
465 4dcu_A GTP-binding protein ENG 97.0 0.00045 1.5E-08 54.4 3.3 26 5-30 21-46 (456)
466 2a5j_A RAS-related protein RAB 97.0 0.00054 1.8E-08 47.0 3.3 24 7-30 21-44 (191)
467 3bk7_A ABC transporter ATP-bin 97.0 0.00043 1.5E-08 56.4 3.2 27 5-31 115-141 (607)
468 3szr_A Interferon-induced GTP- 97.0 0.00034 1.2E-08 57.0 2.6 25 6-30 44-68 (608)
469 3c5c_A RAS-like protein 12; GD 97.0 0.00056 1.9E-08 46.9 3.4 25 6-30 20-44 (187)
470 2i1q_A DNA repair and recombin 97.0 0.00042 1.4E-08 51.9 2.9 25 6-30 97-121 (322)
471 2gco_A H9, RHO-related GTP-bin 97.0 0.00036 1.2E-08 48.4 2.4 24 7-30 25-48 (201)
472 2qu8_A Putative nucleolar GTP- 97.0 0.00046 1.6E-08 48.9 3.0 24 6-29 28-51 (228)
473 1w36_D RECD, exodeoxyribonucle 97.0 0.00048 1.6E-08 56.2 3.4 25 7-31 164-188 (608)
474 1zbd_A Rabphilin-3A; G protein 96.9 0.00048 1.6E-08 47.6 3.0 24 7-30 8-31 (203)
475 1x3s_A RAS-related protein RAB 96.9 0.00057 2E-08 46.7 3.3 24 7-30 15-38 (195)
476 3bk7_A ABC transporter ATP-bin 96.9 0.00054 1.9E-08 55.8 3.6 26 6-31 381-406 (607)
477 3cph_A RAS-related protein SEC 96.9 0.00053 1.8E-08 47.7 3.1 25 6-30 19-43 (213)
478 3j16_B RLI1P; ribosome recycli 96.9 0.0006 2E-08 55.6 3.6 25 7-31 378-402 (608)
479 2dby_A GTP-binding protein; GD 96.9 0.00065 2.2E-08 52.0 3.6 24 7-30 1-24 (368)
480 3b1v_A Ferrous iron uptake tra 96.9 0.00053 1.8E-08 50.3 3.0 24 7-30 3-26 (272)
481 1qhl_A Protein (cell division 96.9 6.5E-05 2.2E-09 53.7 -1.8 24 9-32 29-52 (227)
482 2gno_A DNA polymerase III, gam 96.9 0.00041 1.4E-08 51.8 2.3 24 7-30 18-41 (305)
483 2h57_A ADP-ribosylation factor 96.9 0.00041 1.4E-08 47.5 2.2 25 6-30 20-44 (190)
484 1tf7_A KAIC; homohexamer, hexa 96.9 0.00061 2.1E-08 54.6 3.5 26 6-31 280-305 (525)
485 2q3h_A RAS homolog gene family 96.9 0.00058 2E-08 47.1 3.0 24 6-29 19-42 (201)
486 2qnr_A Septin-2, protein NEDD5 96.9 0.00046 1.6E-08 51.3 2.6 22 8-29 19-40 (301)
487 2fv8_A H6, RHO-related GTP-bin 96.9 0.00066 2.3E-08 47.2 3.3 24 7-30 25-48 (207)
488 2vf7_A UVRA2, excinuclease ABC 96.9 0.00046 1.6E-08 58.1 2.8 19 6-24 35-53 (842)
489 3q3j_B RHO-related GTP-binding 96.9 0.00064 2.2E-08 47.7 3.1 25 6-30 26-50 (214)
490 2q6t_A DNAB replication FORK h 96.9 0.00082 2.8E-08 52.7 4.0 26 5-30 198-223 (444)
491 2il1_A RAB12; G-protein, GDP, 96.9 0.00064 2.2E-08 46.7 3.0 23 7-29 26-48 (192)
492 3a1s_A Iron(II) transport prot 96.9 0.00044 1.5E-08 50.3 2.3 24 6-29 4-27 (258)
493 3cbq_A GTP-binding protein REM 96.9 0.00051 1.7E-08 47.5 2.5 23 7-29 23-45 (195)
494 2o52_A RAS-related protein RAB 96.9 0.00065 2.2E-08 47.1 3.1 23 7-29 25-47 (200)
495 2x77_A ADP-ribosylation factor 96.8 0.0004 1.4E-08 47.5 1.9 24 5-28 20-43 (189)
496 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00077 2.6E-08 51.9 3.7 25 6-30 34-58 (392)
497 1xp8_A RECA protein, recombina 96.8 0.0008 2.7E-08 51.5 3.7 35 6-40 73-111 (366)
498 1ega_A Protein (GTP-binding pr 96.8 0.00065 2.2E-08 50.5 3.1 25 6-30 7-31 (301)
499 2qag_C Septin-7; cell cycle, c 96.8 0.00059 2E-08 53.1 2.9 22 9-30 33-54 (418)
500 3lxw_A GTPase IMAP family memb 96.8 0.00055 1.9E-08 49.4 2.6 25 6-30 20-44 (247)
No 1
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.97 E-value=2.1e-29 Score=176.04 Aligned_cols=167 Identities=50% Similarity=0.953 Sum_probs=138.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCcEEee
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGKIIDY 83 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 83 (172)
++++++|+|+|+|||||||+++.|+++++ +++++.|++++....+..+++.+.....+.+.++..+...+..|+.+++.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~~ 86 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG-LKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDY 86 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEEEEC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC-CeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEEEEe
Confidence 45677899999999999999999999999 99999999988876666666665555445566778787778888889988
Q ss_pred cccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHH
Q psy6661 84 HSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTS 163 (172)
Q Consensus 84 ~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~ 163 (172)
.....+...+++.+|||+||++++.+|+..|++.++........+.+...+.++.+.|.++.++++++.+++++...+++
T Consensus 87 ~~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~~~~~ev~~~v~~ 166 (180)
T 3iij_A 87 HGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQ 166 (180)
T ss_dssp SCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHHHHHH
T ss_pred chhhhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEcCCCCHHHHHHHHHH
Confidence 77777776667899999999999999999998655555444444556777888888888889999999999999999999
Q ss_pred HHHHHHhc
Q psy6661 164 IIQFVKQW 171 (172)
Q Consensus 164 i~~~~~~~ 171 (172)
|+.++++|
T Consensus 167 i~~~l~~~ 174 (180)
T 3iij_A 167 ILKWIEQW 174 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 2
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.96 E-value=5.6e-28 Score=169.52 Aligned_cols=167 Identities=40% Similarity=0.687 Sum_probs=125.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH-cCCceEEehhhHHhhcccccccccccCCCCc---chhHHHHHHHHHH-hcCCc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ-CDSLEWIDVNKIARENQFYLKYDEQYECPEL---DEDKLLDELEPRV-QGGGK 79 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~-l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~ 79 (172)
+++++|+|+|+|||||||+++.|+++ +| +++++.|++++....+...++.+...++ +++.++..+...+ ..++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g-~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~~ 86 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNH 86 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT-EEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCC-CEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCCE
Confidence 45778999999999999999999999 79 9999999999886555444555444444 3455666666666 44567
Q ss_pred EEeecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHH
Q psy6661 80 IIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSS 159 (172)
Q Consensus 80 ii~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~ 159 (172)
+++...+.+++...++.+|||+||++++.+|+..|+.+++........+.+..++.++...|.++.+|++++.+++++..
T Consensus 87 vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~~~~vi~~n~~~~~~~~~ 166 (184)
T 1y63_A 87 VVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAA 166 (184)
T ss_dssp EEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHH
T ss_pred EEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhccCcEEECCCCCHHHHHH
Confidence 88877777776555788999999999999999999765554444332333445566777778767799988889999999
Q ss_pred HHHHHHHHHHhcC
Q psy6661 160 NVTSIIQFVKQWK 172 (172)
Q Consensus 160 ~i~~i~~~~~~~~ 172 (172)
++++|++++..|+
T Consensus 167 ~v~~i~~~l~~~~ 179 (184)
T 1y63_A 167 TVEEIRERVEVLK 179 (184)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 3
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=3e-21 Score=136.75 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=97.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHHHHhcCC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEPRVQGGG 78 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
.++.+|+|+|+|||||||+++.|++++| +++++.|++.... .++...++.... ..-...+.......+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~-~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~-----~~e~~~l~~l~~~~~ 96 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN-VPFIDLDWYIEERFHKTVGELFTERGEAGFR-----ELERNMLHEVAEFEN 96 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT-CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHH-----HHHHHHHHHHTTCSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC-CCEEcchHHHHHHhCCcHHHHHHhcChHHHH-----HHHHHHHHHHhhcCC
Confidence 4678999999999999999999999999 9999999987653 111111111100 001111222333456
Q ss_pred cEEeecccc-cCCc-----CCcCEEEEEeCChHHHHHHHH-hcCCCCchhhhhhc---hHHHHHHHHHHHhhcc-CCcEE
Q psy6661 79 KIIDYHSAE-MFPE-----RWIDQVYVLSADNTTLYDRLV-EKGQSGKKLQDNLQ---CEIFQTILEEARDSYK-EDIVV 147 (172)
Q Consensus 79 ~ii~~~~~~-~~~~-----~~~~~~i~l~~~~~~~~~Rl~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~i 147 (172)
+|++..... .... ..++.+|||++|++++.+|+. .|. .++....... .+.+..++.++.+.|. ++.+|
T Consensus 97 ~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~-~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~I 175 (199)
T 3vaa_A 97 VVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQ-QRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIF 175 (199)
T ss_dssp EEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGG-GCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred cEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCC-CCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 666532111 1110 124789999999999999998 443 2232222111 2346677777777675 56889
Q ss_pred eCCCCChhhHHHHHHHHHHHHHh
Q psy6661 148 SLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 148 ~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
++++.+++++ +++|++.+.+
T Consensus 176 dt~~~s~ee~---~~~I~~~l~~ 195 (199)
T 3vaa_A 176 NADELEDRWQ---IESSVQRLQE 195 (199)
T ss_dssp ECCCCSSHHH---HHHHHHHHHH
T ss_pred ECCCCCHHHH---HHHHHHHHHH
Confidence 9988899999 5555555544
No 4
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.84 E-value=2e-20 Score=130.82 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccccCCCCcchhHHHHHHHHHHhcCCc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQYECPELDEDKLLDELEPRVQGGGK 79 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
++++|+|+|+|||||||+++.|++++| +++++.|.+..... .+...++...+ ..-...+.......+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~-~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~ 77 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK-RILYDSDKEIEKRTGADIAWIFEMEGEAGFR-----RREREMIEALCKLDNI 77 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHHHHHHcCCChhhHHHHhCHHHHH-----HHHHHHHHHHHhcCCc
Confidence 367899999999999999999999999 99999999976531 11111111100 0001112222233344
Q ss_pred EEeecccccCCc------CCcCEEEEEeCChHHHHHHH--HhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeC
Q psy6661 80 IIDYHSAEMFPE------RWIDQVYVLSADNTTLYDRL--VEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSL 149 (172)
Q Consensus 80 ii~~~~~~~~~~------~~~~~~i~l~~~~~~~~~Rl--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 149 (172)
++.......... ...+.+|||++|++++.+|+ ..+. .++........+.+..++.++.+.|. ++.+|++
T Consensus 78 vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~-~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt 156 (185)
T 3trf_A 78 ILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEM-RRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPT 156 (185)
T ss_dssp EEECCTTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTC-SSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred EEecCCceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEEC
Confidence 443211111110 11247899999999999999 4432 22322222123446666777776665 5799999
Q ss_pred CCCChhhHHHHHHHHHHHHHh
Q psy6661 150 PSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 150 ~~~~~~e~~~~i~~i~~~~~~ 170 (172)
++.+++++ ++.|++.+..
T Consensus 157 ~~~~~~e~---~~~I~~~l~~ 174 (185)
T 3trf_A 157 DDLNPRQL---ATQILVDIKQ 174 (185)
T ss_dssp TTCCHHHH---HHHHHHHSCC
T ss_pred CCCCHHHH---HHHHHHHHHH
Confidence 98899999 6666666643
No 5
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.82 E-value=1.4e-20 Score=137.47 Aligned_cols=153 Identities=14% Similarity=0.189 Sum_probs=94.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-------cccccccccCCCCcchhHHHHHHHHHHhc-CC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-------FYLKYDEQYECPELDEDKLLDELEPRVQG-GG 78 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 78 (172)
..+|+|+|+|||||||+++.|++++| +++++.|.+++... ++...++.+.+. .-...+...... .+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg-~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~-----~e~~~l~~l~~~~~~ 121 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG-YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFRE-----KETEALKKLSLMYHQ 121 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT-CEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHH-----HHHHHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC-CcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHH-----HHHHHHHHHHhhcCC
Confidence 67899999999999999999999999 99999999877542 222222221110 001112223332 23
Q ss_pred -cEEeecc-------cccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhh--------chHHHHHHHHHHHhhcc
Q psy6661 79 -KIIDYHS-------AEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNL--------QCEIFQTILEEARDSYK 142 (172)
Q Consensus 79 -~ii~~~~-------~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 142 (172)
+|..+.. ...+. .+.+|||++|++++.+|+.+++...+++.... ..+.+..++.++.+.|.
T Consensus 122 ~Via~GgG~v~~~~~~~~l~---~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~ 198 (250)
T 3nwj_A 122 VVVSTGGGAVIRPINWKYMH---KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYT 198 (250)
T ss_dssp EEEECCGGGGGSHHHHHHHT---TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEecCCCeecCHHHHHHHh---CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHh
Confidence 3333321 11222 27899999999999999987432223333221 12457788888888886
Q ss_pred -CCcEE------------eCCCCChhhHHHHHHHHHHHHHhc
Q psy6661 143 -EDIVV------------SLPSNTHDDMSSNVTSIIQFVKQW 171 (172)
Q Consensus 143 -~~~~i------------~~~~~~~~e~~~~i~~i~~~~~~~ 171 (172)
++.++ |+++.+++++ +++|++++.+|
T Consensus 199 ~ad~vi~~~~~~~~~~~iDTs~~s~eev---~~~I~~~i~~~ 237 (250)
T 3nwj_A 199 KASARVSLENITLKLGYRSVSDLTPAEI---AIEAFEQVQSY 237 (250)
T ss_dssp TSSEEEEHHHHHHHHTCSSGGGCCHHHH---HHHHHHHHHHH
T ss_pred hCCEEEEecccccccccccCCCCCHHHH---HHHHHHHHHHH
Confidence 56777 7788999999 77777666654
No 6
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.82 E-value=9.1e-20 Score=126.47 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=91.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-c-----cccccccccCCCCcchhHHHHHHHHHHhcCCcE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-Q-----FYLKYDEQYECPELDEDKLLDELEPRVQGGGKI 80 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (172)
|++|+|+|+|||||||+++.|+++++ +++++.|.+.+.. + .+...+.. .+. ..-...+..+....++|
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~-~~~~d~d~~~~~~~g~~~~~~~~~~g~~----~~~-~~~~~~~~~l~~~~~~v 77 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLD-LVFLDSDFLIEQKFNQKVSEIFEQKREN----FFR-EQEQKMADFFSSCEKAC 77 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHHHHHHHTSCHHHHHHHHCHH----HHH-HHHHHHHHHHTTCCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC-CCEEcccHHHHHHcCCCHHHHHHHcCHH----HHH-HHHHHHHHHHHccCCEE
Confidence 35799999999999999999999999 9999999987653 1 01101111 000 00011122222334455
Q ss_pred EeecccccCCc--CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCCCChhh
Q psy6661 81 IDYHSAEMFPE--RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSNTHDD 156 (172)
Q Consensus 81 i~~~~~~~~~~--~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~e 156 (172)
+.......... ...+.+|||++|++++.+|+..|....++.... .+.+...+.++.+.|. .+.+||+++.++++
T Consensus 78 i~~g~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~--~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~ee 155 (175)
T 1via_A 78 IATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYD--EIKAKKLYNERLSKYEQKANFILNIENKNIDE 155 (175)
T ss_dssp EECCTTGGGSTTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCC--HHHHHHHHHHHHHHHHHHCSEEEECTTCCHHH
T ss_pred EECCCCEehhhHHhcCCEEEEEeCCHHHHHHHHhcccCCCCCCccc--HHHHHHHHHHHHHHHHhcCCEEEECCCCCHHH
Confidence 54221111111 124689999999999999998773111222211 3335566666666553 57889998889999
Q ss_pred HHHHHHHHHHHHH
Q psy6661 157 MSSNVTSIIQFVK 169 (172)
Q Consensus 157 ~~~~i~~i~~~~~ 169 (172)
+ ++.|++.++
T Consensus 156 v---~~~I~~~l~ 165 (175)
T 1via_A 156 L---LSEIKKVIK 165 (175)
T ss_dssp H---HHHHHHHHC
T ss_pred H---HHHHHHHHH
Confidence 9 666666553
No 7
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.82 E-value=4.8e-19 Score=122.12 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=88.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcC-CcEEee--
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGG-GKIIDY-- 83 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~-- 83 (172)
|.+|+|+|+|||||||+++.|+++++ +++++.|.+...... ...+++.... +..+ .++.|.
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~~~~~~~--------------~~~~~~~~~~-l~~~~~vi~dr~~ 64 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELK-YPIIKGSSFELAKSG--------------NEKLFEHFNK-LADEDNVIIDRFV 64 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHC-CCEEECCCHHHHTTC--------------HHHHHHHHHH-HTTCCSEEEESCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CeeecCcccccchhH--------------HHHHHHHHHH-HHhCCCeEEeeee
Confidence 35899999999999999999999999 999999887654320 0111111111 1112 122220
Q ss_pred ------------------cccccCCc--CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-
Q psy6661 84 ------------------HSAEMFPE--RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK- 142 (172)
Q Consensus 84 ------------------~~~~~~~~--~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (172)
.....+.. ..++.+|||++|++++.+|+..|++... .....+.+...|.+....|.
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~---~~~~~~~~~~~~~~~~~~~~~ 141 (173)
T 3kb2_A 65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYI---EGKDIDSILELYREVMSNAGL 141 (173)
T ss_dssp HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCC---CHHHHHHHHHHHHHHHHTCSS
T ss_pred cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcch---hhhHHHHHHHHHHHHHhhcCC
Confidence 00000100 1357899999999999999999853211 11122335566677666665
Q ss_pred CCcEEeCCCCChhhHHHHHHHHHHHHHhc
Q psy6661 143 EDIVVSLPSNTHDDMSSNVTSIIQFVKQW 171 (172)
Q Consensus 143 ~~~~i~~~~~~~~e~~~~i~~i~~~~~~~ 171 (172)
...+||+++.+++++ +++|.+.++.|
T Consensus 142 ~~~~id~~~~~~~ev---~~~I~~~~~~~ 167 (173)
T 3kb2_A 142 HTYSWDTGQWSSDEI---AKDIIFLVELE 167 (173)
T ss_dssp CEEEEETTTSCHHHH---HHHHHHHHHHG
T ss_pred CEEEEECCCCCHHHH---HHHHHHHHhCC
Confidence 456777776899999 55555555443
No 8
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.81 E-value=2.2e-19 Score=123.74 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccccCCCCcchhHHHHHHHHHHhcCC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQYECPELDEDKLLDELEPRVQGGG 78 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
.+|.+|+|+|+|||||||+++.|++++| +++++.|.+.+... ++..+++.. +. ..-...+......+.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg-~~~id~D~~~~~~~g~~~~~~~~~~g~~~----~~-~~~~~~l~~~~~~~~ 78 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALK-LEVLDTDMIISERVGLSVREIFEELGEDN----FR-MFEKNLIDELKTLKT 78 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHT-CCEEEHHHHHHHHHTSCHHHHHHHTCHHH----HH-HHHHHHHHHHHTCSS
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHHHHHHhCCCHHHHHHHhCHHH----HH-HHHHHHHHHHHhcCC
Confidence 3689999999999999999999999999 99999999877531 111111110 10 000111223333344
Q ss_pred c-EEeecccccCCc--CCcCEEEEEeCChHHHHHHHHhcCC-CCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCCC
Q psy6661 79 K-IIDYHSAEMFPE--RWIDQVYVLSADNTTLYDRLVEKGQ-SGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSN 152 (172)
Q Consensus 79 ~-ii~~~~~~~~~~--~~~~~~i~l~~~~~~~~~Rl~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~ 152 (172)
. |+.......... ..++.+|||+||++++.+|+..|.. .++... + .+.+...+..+.+.|. .+.+|++++
T Consensus 79 ~~Vi~~g~g~~~~~~l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~-~--~~~~~~~~~~r~~~~~~~a~~~Id~~~- 154 (168)
T 1zuh_A 79 PHVISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN-N--LTQAKELFEKRQALYEKNASFIIDARG- 154 (168)
T ss_dssp CCEEECCGGGGGCGGGTTSEEEEEEECCHHHHHHHHCC--------CC-T--THHHHHHHHHHHHHHHHTCSEEEEGGG-
T ss_pred CEEEECCCCEechhHHhcCCEEEEEECCHHHHHHHHhccCCCCCCCcc-C--HHHHHHHHHHHHHHHHHHCCEEEECCC-
Confidence 4 554211111101 2257899999999999999987721 112111 1 2235555555555553 578888877
Q ss_pred ChhhHHHHHH
Q psy6661 153 THDDMSSNVT 162 (172)
Q Consensus 153 ~~~e~~~~i~ 162 (172)
+++++.+++.
T Consensus 155 ~~e~~~~~I~ 164 (168)
T 1zuh_A 155 GLNNSLKQVL 164 (168)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9888844443
No 9
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.81 E-value=3.5e-19 Score=126.42 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=98.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc---------ccccccccccCC--CCcch----------
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN---------QFYLKYDEQYEC--PELDE---------- 63 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~---------~~~~~~~~~~~~--~~~~~---------- 63 (172)
.+|.-|.|||.+||||||+++.|++ +| ++++++|.++++. .++..+|++... ..+|.
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g-~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d 84 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RG-ASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD 84 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TT-CEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CC-CcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence 4688999999999999999999998 89 9999999988753 122333433321 11121
Q ss_pred hHHHHHH------------HHHHhc-CC--cEEeecccccCC----cCCcCEEEEEeCChHHHHHHHHhc-CCCCchhhh
Q psy6661 64 DKLLDEL------------EPRVQG-GG--KIIDYHSAEMFP----ERWIDQVYVLSADNTTLYDRLVEK-GQSGKKLQD 123 (172)
Q Consensus 64 ~~~~~~~------------~~~~~~-~~--~ii~~~~~~~~~----~~~~~~~i~l~~~~~~~~~Rl~~r-~~~~~~~~~ 123 (172)
......+ ...+.. +. ++++. |.+++ ...+|.+|+++||++++.+|+.+| +.+......
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~--pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ 162 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREARDAQGPYVIFVV--PLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQVEA 162 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC--TTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE--ecccccCCccccCCeEEEEECCHHHHHHHHHhcCCCCHHHHHH
Confidence 1111122 222222 22 34444 67777 345799999999999999999998 444443332
Q ss_pred hhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 124 NLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
....+ +. ..+.. -.++++|++++.+++++..+++.+++.+.
T Consensus 163 ri~~Q-~~--~eek~--~~AD~VIdN~~gsle~l~~qV~~l~~~~~ 203 (210)
T 4i1u_A 163 IIARQ-AT--REARL--AAADDVIVNDAATPDALAVQVDALHQRYL 203 (210)
T ss_dssp HHHHS-CC--HHHHH--HTCSEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CC--hHHHH--HhCCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 22111 10 11111 13578888652599999999998887764
No 10
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.81 E-value=1e-19 Score=127.10 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=91.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-c-----ccccccccCCCCcchhHHHHHHHHHHhcCCcEE
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-F-----YLKYDEQYECPELDEDKLLDELEPRVQGGGKII 81 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 81 (172)
++|+|+|+|||||||+|+.|++++| +++++.|.+.+... . +...++. .+. ......+........+|+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-~~~id~D~~~~~~~g~~~~~~~~~~g~~----~~~-~~~~~~~~~~~~~~~~vi 76 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVAIEQRTGRSIADIFATDGEQ----EFR-RIEEDVVRAALADHDGVL 76 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHHHHHHHSSCHHHHHHHHCHH----HHH-HHHHHHHHHHHHHCCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-CCEEeCchHHHHHcCCCHHHHHHHhChH----HHH-HHHHHHHHHHHhcCCeEE
Confidence 5799999999999999999999999 99999999877531 0 1001110 110 011122223333334444
Q ss_pred eecccccCCc---C--CcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCCCCh
Q psy6661 82 DYHSAEMFPE---R--WIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSNTH 154 (172)
Q Consensus 82 ~~~~~~~~~~---~--~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~ 154 (172)
.......+.. . ..+.+|||+||++++.+|+..|.. ++........+.+..++..+.+.|. .+.+||+++.++
T Consensus 77 ~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~-r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ 155 (184)
T 2iyv_A 77 SLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTV-RPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNP 155 (184)
T ss_dssp ECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCC-CSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCH
T ss_pred ecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCC-CCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCH
Confidence 3211111110 0 046899999999999999988752 1221211112335555555455443 578899887899
Q ss_pred hhHHHHHHHHHHHHHh
Q psy6661 155 DDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 155 ~e~~~~i~~i~~~~~~ 170 (172)
+++ ++.|++++..
T Consensus 156 ee~---~~~I~~~l~~ 168 (184)
T 2iyv_A 156 GAV---VRHILSRLQV 168 (184)
T ss_dssp HHH---HHHHHTTSCC
T ss_pred HHH---HHHHHHHHhh
Confidence 998 6666665543
No 11
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.80 E-value=1.2e-18 Score=120.32 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=89.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-cc-----ccccccccCCCCcchhHHHHHHHHHHhcCCcE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-QF-----YLKYDEQYECPELDEDKLLDELEPRVQGGGKI 80 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 80 (172)
|++|+|+|+|||||||+++.|++++| +++++.|.+.... +. +...++. .+ ..+...+...+..+++|
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg-~~~id~d~~~~~~~g~~~~~~~~~~~~~----~~--~~~~~~~~~~l~~~~~v 74 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALG-YEFVDTDIFMQHTSGMTVADVVAAEGWP----GF--RRRESEALQAVATPNRV 74 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHHCSCHHHHHHHHHHH----HH--HHHHHHHHHHHCCSSEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CcEEcccHHHHHHhCCCHHHHHHHcCHH----HH--HHHHHHHHHHhhcCCeE
Confidence 46899999999999999999999999 9999999987653 10 0000000 00 01111111112234556
Q ss_pred Eeec-ccccCCc-----CCcCEEEEEeCChHHHHHHHH--hcCCCCchhhhhhchHHHHHHHHHHHhhcc-CCcEEeCCC
Q psy6661 81 IDYH-SAEMFPE-----RWIDQVYVLSADNTTLYDRLV--EKGQSGKKLQDNLQCEIFQTILEEARDSYK-EDIVVSLPS 151 (172)
Q Consensus 81 i~~~-~~~~~~~-----~~~~~~i~l~~~~~~~~~Rl~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 151 (172)
++.. ...+.+. ..++.+|||+||++++.+|+. .|...++........+.+...+....+.|. .+.+||+++
T Consensus 75 i~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~ 154 (173)
T 1e6c_A 75 VATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDAT 154 (173)
T ss_dssp EECCTTGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETT
T ss_pred EECCCcEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCC
Confidence 6422 1111111 114789999999999999999 772122222211112235555555444343 478899887
Q ss_pred CChhhHHHHHHHHHHHH
Q psy6661 152 NTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 152 ~~~~e~~~~i~~i~~~~ 168 (172)
.+++++ ++.|.+++
T Consensus 155 ~~~~~~---~~~i~~~l 168 (173)
T 1e6c_A 155 QPPAAI---VCELMQTM 168 (173)
T ss_dssp SCHHHH---HHHHHHHT
T ss_pred CCHHHH---HHHHHHHh
Confidence 899998 55555554
No 12
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.79 E-value=2.3e-18 Score=120.55 Aligned_cols=158 Identities=13% Similarity=0.158 Sum_probs=86.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhc----ccccccccccCCCCcchhHH-----HHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIAREN----QFYLKYDEQYECPELDEDKL-----LDELEPR 73 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 73 (172)
+.+|+|+|+|||||||+++.|++++++ +++++.+++++.. +.+... .+......+.... .+.+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDR-DQMRKMDPETQKRIQKMAGRKIAEM 81 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSG-GGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCH-HHHhcCCHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999998874 6889988876543 111111 1111111111111 1223333
Q ss_pred HhcCCcEEeeccc-------------ccCCcCCcCEEEEEeCChHHHHH-HHHh--cCCCCchhhhhhchHHHHHHHHHH
Q psy6661 74 VQGGGKIIDYHSA-------------EMFPERWIDQVYVLSADNTTLYD-RLVE--KGQSGKKLQDNLQCEIFQTILEEA 137 (172)
Q Consensus 74 ~~~~~~ii~~~~~-------------~~~~~~~~~~~i~l~~~~~~~~~-Rl~~--r~~~~~~~~~~~~~~~~~~~~~~~ 137 (172)
...+++|+++... .++....++.+|||+||++++.+ |+.. |++.............+...+...
T Consensus 82 ~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~~ 161 (192)
T 1kht_A 82 AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMS 161 (192)
T ss_dssp HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHHHH
Confidence 3445678877432 11111136889999999999996 9987 653222111111112233334444
Q ss_pred HhhccCCc--EEeCCCCChhhHHHHHHHHHHHH
Q psy6661 138 RDSYKEDI--VVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 138 ~~~~~~~~--~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
...|.... +++..+.+++++ ++.|++.+
T Consensus 162 ~~~~~~~~~~~i~~~~~~~e~~---~~~i~~~i 191 (192)
T 1kht_A 162 YGVLTGATVKIVQNRNGLLDQA---VEELTNVL 191 (192)
T ss_dssp HHHHHCCEEEEEECCTTCHHHH---HHHHHHHH
T ss_pred HHHhcCCcEEEEeCCCCCHHHH---HHHHHHHh
Confidence 44443332 232333448888 55555443
No 13
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.78 E-value=6.1e-18 Score=119.93 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=91.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc--------ccccccccccCCCC---c--------ch---
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN--------QFYLKYDEQYECPE---L--------DE--- 63 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~--------~~~~~~~~~~~~~~---~--------~~--- 63 (172)
+.++|.|.|++||||||+++.|++++| +++++ ++++... ..+...++...... + ..
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg-~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYN-IPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDI 82 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTT-CCEEC-HHHHHHTTCC---------------------------------CHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhC-cCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence 456899999999999999999999999 99999 6665432 11222222211000 0 00
Q ss_pred -hHHHHHHHHHH--hcCCcEEeeccc-ccCCcCCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhhchHHHHHHHHHHH
Q psy6661 64 -DKLLDELEPRV--QGGGKIIDYHSA-EMFPERWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNLQCEIFQTILEEAR 138 (172)
Q Consensus 64 -~~~~~~~~~~~--~~~~~ii~~~~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~~~~~~~~~~~~~~ 138 (172)
....+.+.++. ..+++|+.+... ..++.....++|||++|++++.+|+..+. .+..... +.+......+.
T Consensus 83 ~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~-----~~i~~~d~~R~ 157 (201)
T 3fdi_A 83 AIRQFNFIRKKANEEKESFVIVGRCAEEILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTAL-----NMMKKMDKMRK 157 (201)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEESTTHHHHTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEECCcchhcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHHH
Confidence 11233333444 457788876432 33443223578999999999999998763 2211111 11323333333
Q ss_pred hhcc------------CCcEEeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 139 DSYK------------EDIVVSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 139 ~~~~------------~~~~i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
..|. .+++|+++..+++++ ++.|++.++.
T Consensus 158 ~~y~~~~~~~~~~~~~~dl~Idt~~l~~eev---v~~I~~~i~~ 198 (201)
T 3fdi_A 158 VYHNFYCESKWGDSRTYDICIKIGKVDVDTA---TDMIIKYIDS 198 (201)
T ss_dssp HHHHHHCSSCTTBGGGCSEEEEESSSCHHHH---HHHHHHHHHT
T ss_pred HHHHHHhCCCCCCcccCCEEEECCCCCHHHH---HHHHHHHHHH
Confidence 3222 369999999999999 7777777653
No 14
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.77 E-value=3.3e-18 Score=117.59 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=87.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccccCCCCcchhHHHHHHHHHHh-cCCcEE
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQYECPELDEDKLLDELEPRVQ-GGGKII 81 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii 81 (172)
+|+|+|+|||||||+++.|+++++ +++++.|++.+... ++...++. .+ ..+...+-..+. .+.+|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~~~~~~g~~~~~~~~~~~~~----~~--~~~~~~~l~~l~~~~~~Vi 74 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-IPFYDVDEEVQKREGLSIPQIFEKKGEA----YF--RKLEFEVLKDLSEKENVVI 74 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-CCEEEHHHHHHHHHTSCHHHHHHHSCHH----HH--HHHHHHHHHHHTTSSSEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CCEEECcHHHHHHcCCCHHHHHHHhChH----HH--HHHHHHHHHHHhccCCeEE
Confidence 699999999999999999999999 99999999976531 01111110 00 011111111222 455666
Q ss_pred e-ecccccCCc-----CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-CCcEEeCCCCCh
Q psy6661 82 D-YHSAEMFPE-----RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK-EDIVVSLPSNTH 154 (172)
Q Consensus 82 ~-~~~~~~~~~-----~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 154 (172)
+ +..+.+.+. ..++.+|||++|++++.+|+..|. .++... . ..+.+...+.+..+.|. +++++ +++.++
T Consensus 75 ~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~-~-~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~ 150 (168)
T 2pt5_A 75 STGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK-ERPLLK-R-PLDEIKNLFEERRKIYSKADIKV-KGEKPP 150 (168)
T ss_dssp ECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT-CCBGGG-S-CGGGTHHHHHHHHHHHTTSSEEE-ECSSCH
T ss_pred ECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC-CCCCCc-c-hHHHHHHHHHHHHHHHHhCCEEE-CCCCCH
Confidence 5 221111110 115789999999999999998875 222221 1 12224444555555454 56777 666899
Q ss_pred hhHHHHHHHHHHHHH
Q psy6661 155 DDMSSNVTSIIQFVK 169 (172)
Q Consensus 155 ~e~~~~i~~i~~~~~ 169 (172)
+++ .+.|.+.+.
T Consensus 151 ~~~---~~~i~~~l~ 162 (168)
T 2pt5_A 151 EEV---VKEILLSLE 162 (168)
T ss_dssp HHH---HHHHHHHHH
T ss_pred HHH---HHHHHHHHH
Confidence 999 444544443
No 15
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.77 E-value=5.9e-19 Score=121.95 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccccCCCCcchhHHHHHHHHHHhcCCc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQYECPELDEDKLLDELEPRVQGGGK 79 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
++.+|+|+|+|||||||+++.|++.++ +++++.|.++.... ++...++.. +.. .-...+.......++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~-~~~id~d~~~~~~~~~~i~~i~~~~g~~~----~~~-~~~~~l~~l~~~~~~ 76 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQEIEKRTGADVGWVFDLEGEEG----FRD-REEKVINELTEKQGI 76 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT-CEEEEHHHHHHHHHTSCHHHHHHHHHHHH----HHH-HHHHHHHHHHTSSSE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEeccHHHHHHhCcCHHHHHHHHhHHH----HHH-HHHHHHHHHHhCCCe
Confidence 357899999999999999999999999 99999998866421 011011110 000 001122232333455
Q ss_pred EEeec-ccccCCc-----CCcCEEEEEeCChHHHHHHHHhcCCCCchhhh-hhchHHHHHHHHHHHhhcc--CCcEEeCC
Q psy6661 80 IIDYH-SAEMFPE-----RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQD-NLQCEIFQTILEEARDSYK--EDIVVSLP 150 (172)
Q Consensus 80 ii~~~-~~~~~~~-----~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~~ 150 (172)
++... ...+... ...+.++|++++++++.+|+..|.. ++.... +...+.+...+..+.+.|. ++++|+++
T Consensus 77 v~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~-r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id~~ 155 (173)
T 1kag_A 77 VLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKK-RPLLHVETPPREVLEALANERNPLYEEIADVTIRTD 155 (173)
T ss_dssp EEECCTTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC-------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC---
T ss_pred EEECCCeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEECC
Confidence 55321 1111110 2247899999999999999988742 121111 1112335555655555553 57888887
Q ss_pred CCChhhHHHHHHHHHHHH
Q psy6661 151 SNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 151 ~~~~~e~~~~i~~i~~~~ 168 (172)
+.+++++ +++|.+++
T Consensus 156 ~~~~~~~---~~~i~~~l 170 (173)
T 1kag_A 156 DQSAKVV---ANQIIHML 170 (173)
T ss_dssp --CHHHH---HHHHHHHH
T ss_pred CCCHHHH---HHHHHHHH
Confidence 7899999 55555554
No 16
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.76 E-value=2.2e-17 Score=117.18 Aligned_cols=149 Identities=16% Similarity=0.236 Sum_probs=85.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---------cccccccccCCC------------CcchhHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---------FYLKYDEQYECP------------ELDEDKL 66 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---------~~~~~~~~~~~~------------~~~~~~~ 66 (172)
.+|+|+|++||||||+++.|++ +| +++++.|.+.+... ++..++...... .|+....
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-VPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-CCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-CcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 5899999999999999999988 89 99999999876531 111122221110 0110011
Q ss_pred H---H---------HHHHHHh--cC-CcEEeecccccCC---cCCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhhch
Q psy6661 67 L---D---------ELEPRVQ--GG-GKIIDYHSAEMFP---ERWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNLQC 127 (172)
Q Consensus 67 ~---~---------~~~~~~~--~~-~~ii~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~~~ 127 (172)
. . .+.+.+. .+ .+|++++. +++ ...++.+|||+||++++.+|+..|. .+.+.+.
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~--l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~----- 153 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPL--LIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQ----- 153 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTT--TTTTTCGGGCSEEEEEECCHHHHHHHHC-----CHHHHH-----
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCEEEEEech--hhhcCcHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH-----
Confidence 1 1 1111121 23 45556532 322 2346889999999999999998884 2211111
Q ss_pred HHHHHHHH---HHHhhc-cCCcEEeCCCCChh----hHHHHHHHHHHHHHh
Q psy6661 128 EIFQTILE---EARDSY-KEDIVVSLPSNTHD----DMSSNVTSIIQFVKQ 170 (172)
Q Consensus 128 ~~~~~~~~---~~~~~~-~~~~~i~~~~~~~~----e~~~~i~~i~~~~~~ 170 (172)
..+. ...+.+ .++++|++++ +++ ++.+++..++..+..
T Consensus 154 ----~r~~~q~~~~~~~~~ad~vIdn~~-~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 154 ----RIMNSQVSQQERLKWADDVINNDA-ELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp ----HHHHHSCCHHHHHHHCSEEEECCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHhcCChHHHHHhCCEEEECCC-CccccHHHHHHHHHHHHHHHHH
Confidence 1111 111122 2578888877 899 887777777765543
No 17
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.75 E-value=5.3e-18 Score=120.09 Aligned_cols=151 Identities=15% Similarity=0.198 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccc-ccccccCCCCcchhHHHHHHHHHHhcC-CcEEee
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL-KYDEQYECPELDEDKLLDELEPRVQGG-GKIIDY 83 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~ 83 (172)
++++|+|+|+|||||||+++.|++.+| +.+++.|.+........ ..+..+.. .+....+..+...+..+ ++|++.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg-~~~i~~d~~~~~~~~~~~~~g~~~~~--~~~~~~~~~l~~~~~~~~~vivd~ 93 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACG-YPFIEGDALHPPENIRKMSEGIPLTD--DDRWPWLAAIGERLASREPVVVSC 93 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHT-CCEEEGGGGCCHHHHHHHHHTCCCCH--HHHHHHHHHHHHHHTSSSCCEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CEEEeCCcCcchhhHHHHhcCCCCCc--hhhHHHHHHHHHHHhcCCCEEEEC
Confidence 367899999999999999999999999 99999998853210000 00000000 01123444555555544 567775
Q ss_pred cccc-----cCCc--CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEeCCCCCh
Q psy6661 84 HSAE-----MFPE--RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVSLPSNTH 154 (172)
Q Consensus 84 ~~~~-----~~~~--~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~ 154 (172)
.... .+.. ..+..+|||+||++++.+|+..|.....+ .+.+...+......+. ...+||++ .++
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Id~~-~~~ 166 (202)
T 3t61_A 94 SALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP------SSLLQTQLETLEDPRGEVRTVAVDVA-QPL 166 (202)
T ss_dssp CCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC------HHHHHHHHHHCCCCTTSTTEEEEESS-SCH
T ss_pred CCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC------HHHHHHHHHhcCCCCCCCCeEEEeCC-CCH
Confidence 3211 1111 11247899999999999999998632111 2223333333322232 34677776 788
Q ss_pred hhHHHHHHHHHH
Q psy6661 155 DDMSSNVTSIIQ 166 (172)
Q Consensus 155 ~e~~~~i~~i~~ 166 (172)
+++.+.|..++.
T Consensus 167 ~e~~~~I~~~l~ 178 (202)
T 3t61_A 167 AEIVREALAGLA 178 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888554444443
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.75 E-value=3.8e-17 Score=114.47 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=70.0
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-cccccc----c--CCCCcchhHHHHHHHHH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDEQ----Y--ECPELDEDKLLDELEPR 73 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~~----~--~~~~~~~~~~~~~~~~~ 73 (172)
|+. +++++|+|+|+|||||||+++.|++++| +++++.|++++..... ...+.. + ....+ .......+...
T Consensus 1 m~~-~~~~~I~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~-~~~~~~~l~~~ 77 (194)
T 1qf9_A 1 MEK-SKPNVVFVLGGPGSGKGTQCANIVRDFG-WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVP-SIVTVKLLKNA 77 (194)
T ss_dssp CCC-CCCEEEEEEESTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCC-HHHHHHHHHHH
T ss_pred CCC-CcCcEEEEECCCCCCHHHHHHHHHHHhC-CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Confidence 555 3456899999999999999999999999 9999999887653100 000000 0 01111 12222233333
Q ss_pred Hh---cCCcEEeecccc-----cC----Cc-CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 74 VQ---GGGKIIDYHSAE-----MF----PE-RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 74 ~~---~~~~ii~~~~~~-----~~----~~-~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+. ..++|+++.... .+ .. ..++.+|||+||++++.+|+..|+
T Consensus 78 i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 132 (194)
T 1qf9_A 78 IDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG 132 (194)
T ss_dssp HHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcc
Confidence 32 235777753211 11 11 146789999999999999999885
No 19
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.75 E-value=2.8e-17 Score=115.53 Aligned_cols=159 Identities=21% Similarity=0.321 Sum_probs=88.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-cccccc------cCCCCcchhHHH----HHHHH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDEQ------YECPELDEDKLL----DELEP 72 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~~------~~~~~~~~~~~~----~~~~~ 72 (172)
|+++++|+|+|+|||||||+++.|+++++ +++++.|++++..... ...+.. .....+ ...+. ..+..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~i~~ 83 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG-YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVP-LETVLDMLRDAMVA 83 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCC-HHHHHHHHHHHHHh
Confidence 45678999999999999999999999999 9999999987653100 000000 011121 12222 22233
Q ss_pred HHhcC-CcEEeeccccc-----CC--cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhh--hchHHHHHHHHHHHh---
Q psy6661 73 RVQGG-GKIIDYHSAEM-----FP--ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDN--LQCEIFQTILEEARD--- 139 (172)
Q Consensus 73 ~~~~~-~~ii~~~~~~~-----~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~--~~~~~~~~~~~~~~~--- 139 (172)
.+..+ ++|+|+..... +. -..++.+|||+||++++.+|+..|+......... .-...+..++....+
T Consensus 84 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 163 (196)
T 2c95_A 84 KVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIA 163 (196)
T ss_dssp HTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHH
T ss_pred ccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33333 57777632111 00 1336889999999999999999885321111111 001123333333221
Q ss_pred hcc-CCc--EEeCCCCChhhHHHHHHHHH
Q psy6661 140 SYK-EDI--VVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 140 ~~~-~~~--~i~~~~~~~~e~~~~i~~i~ 165 (172)
.|. .+. +|++ +.+++++.+.+..++
T Consensus 164 ~~~~~~~~~~Id~-~~~~e~v~~~i~~~l 191 (196)
T 2c95_A 164 FYEKRGIVRKVNA-EGSVDSVFSQVCTHL 191 (196)
T ss_dssp HHHHHTCEEEEEC-CSCHHHHHHHHHHHH
T ss_pred HHHhcCcEEEEEC-CCCHHHHHHHHHHHH
Confidence 132 233 4664 478899855554444
No 20
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.74 E-value=7e-17 Score=111.26 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=84.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccc-cc---cCCCCc---chhHHHHHHHHHH--hc-C
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYD-EQ---YECPEL---DEDKLLDELEPRV--QG-G 77 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~-~~---~~~~~~---~~~~~~~~~~~~~--~~-~ 77 (172)
++|+|+|+|||||||+++.| +++| +++++.+++++......... .. +..... ....+...+.+.+ .. .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 79 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG-AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHD 79 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT-CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCS
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC-CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Confidence 58999999999999999999 8899 99999998877641100000 00 000000 0112223333334 22 3
Q ss_pred CcEEeeccc----ccCCc--CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHH--H--Hhhc--cCCc
Q psy6661 78 GKIIDYHSA----EMFPE--RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEE--A--RDSY--KEDI 145 (172)
Q Consensus 78 ~~ii~~~~~----~~~~~--~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~--~--~~~~--~~~~ 145 (172)
.+|+++... ..+.. ..++.+|||++|++++.+|+..|+...... ..+.+...+.. . ...+ .+++
T Consensus 80 ~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~ad~ 155 (179)
T 3lw7_A 80 LVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSK----EISELIRRDREELKLGIGEVIAMADY 155 (179)
T ss_dssp CEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CC----CHHHHHHHHHHHHHHTHHHHHHTCSE
T ss_pred eEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcc----hHHHHHHHHHhhhccChHhHHHhCCE
Confidence 577777411 00111 123578999999999999999997431111 11111111110 1 1111 2567
Q ss_pred EEeCCCCChhhHHHHHHHHHHH
Q psy6661 146 VVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 146 ~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
+|++++ +++++.+++.+++..
T Consensus 156 vId~~~-~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 156 IITNDS-NYEEFKRRCEEVTDR 176 (179)
T ss_dssp EEECCS-CHHHHHHHHHHHHHH
T ss_pred EEECCC-CHHHHHHHHHHHHHH
Confidence 888665 899995555555543
No 21
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.74 E-value=1.8e-17 Score=118.54 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=72.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-cccccc------ccCCCCcchhHHHHHHHHHHh-
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDE------QYECPELDEDKLLDELEPRVQ- 75 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~- 75 (172)
+++.++|+|.|||||||+|+|+.|+++|| +++++++++++..-. -...+. +....+. .+.+...+.+.+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g-~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVp-de~~~~lv~~~l~~ 103 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH-FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP-LEVVLALLKEAMIK 103 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC-CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC-CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCC-HHHHHHHHHHHHhh
Confidence 35677899999999999999999999999 999999999876410 000010 1122222 2334444443332
Q ss_pred ----cCCcEEeeccccc-----CCc--CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 76 ----GGGKIIDYHSAEM-----FPE--RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 76 ----~~~~ii~~~~~~~-----~~~--~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..++++|+..... +.. ..++.+|+|+||.+++.+|+..|.
T Consensus 104 ~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~ 154 (217)
T 3umf_A 104 LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA 154 (217)
T ss_dssp HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc
Confidence 2358888853321 111 235789999999999999999885
No 22
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.74 E-value=1.6e-17 Score=117.60 Aligned_cols=151 Identities=15% Similarity=0.282 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchh-------HHHHHHHHHHhcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDED-------KLLDELEPRVQGG 77 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 77 (172)
.++.+|+|+|+|||||||+++.|++.+| ..+++.|++........ .. ....+... .+...+......+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g-~~~i~~d~~~~~~~~~~---~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g 101 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG-LEFAEADAFHSPENIAT---MQ-RGIPLTDEDRWPWLRSLAEWMDARADAG 101 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC-CEEEEGGGGSCHHHHHH---HH-TTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC-CeEEcccccccHHHHHH---Hh-cCCCCCCcccccHHHHHHHHHHHHHhcC
Confidence 3567999999999999999999999999 99999888743210000 00 00111111 1111112222333
Q ss_pred -CcEEeecccc-----cCCc-CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc--CCcEEe
Q psy6661 78 -GKIIDYHSAE-----MFPE-RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--EDIVVS 148 (172)
Q Consensus 78 -~~ii~~~~~~-----~~~~-~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~ 148 (172)
.+|++..... .+.. .....+|||+||++++.+|+..|...... .+.+...+....+.|. .+++||
T Consensus 102 ~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~------~~~l~~~~~~~~~~~~~~~~~~Id 175 (200)
T 4eun_A 102 VSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMP------ASLLQSQLATLEALEPDESGIVLD 175 (200)
T ss_dssp CCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSC------GGGHHHHHHHCCCCCTTSCEEEEE
T ss_pred CCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCC------HHHHHHHHHHhCCCCCCCCeEEEE
Confidence 5666653211 1111 11236799999999999999988632211 2224444555444454 457777
Q ss_pred CCCCChhhHHHHHHHHHHHHHh
Q psy6661 149 LPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 149 ~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
++ .+++++ +++|.+++..
T Consensus 176 ~~-~~~~e~---~~~I~~~l~~ 193 (200)
T 4eun_A 176 LR-QPPEQL---IERALTWLDI 193 (200)
T ss_dssp TT-SCHHHH---HHHHHHHHCC
T ss_pred CC-CCHHHH---HHHHHHHHHh
Confidence 75 488888 6666666654
No 23
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.74 E-value=6.6e-17 Score=116.20 Aligned_cols=38 Identities=34% Similarity=0.594 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARE 45 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~ 45 (172)
..+|.|+|+|||||||+++.|++.+| +++++.|++.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g-~~~~d~g~i~~~ 42 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ-WHLLDSGAIYRV 42 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CCcccCcceeeh
Confidence 46899999999999999999999999 999999998873
No 24
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.74 E-value=2.6e-16 Score=111.48 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=86.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-------ccc----c-------ccc---------c-c--CC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-------FYL----K-------YDE---------Q-Y--EC 58 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-------~~~----~-------~~~---------~-~--~~ 58 (172)
+|+|+|++||||||+++.|++++| +++++.|.+.+... ... . .+. . + ..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-VPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGE 82 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-CceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCe
Confidence 899999999999999999999999 99999999875421 100 0 000 0 0 00
Q ss_pred CCcc---hh-------------HHHHHHHH---HHhcCCcEEeecccccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCc
Q psy6661 59 PELD---ED-------------KLLDELEP---RVQGGGKIIDYHSAEMFPERWIDQVYVLSADNTTLYDRLVEKGQSGK 119 (172)
Q Consensus 59 ~~~~---~~-------------~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~ 119 (172)
.++. .. .+.+.+.. .+. +++|+++......-...++.+|||+||++++.+|+..|.. .
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~~~~~~~~d~~i~l~a~~e~~~~R~~~r~~--~ 159 (208)
T 3ake_A 83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERP--Q 159 (208)
T ss_dssp ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHTSS--S
T ss_pred eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEccceeEEEecCCcEEEEEECCHHHHHHHHHhhcc--c
Confidence 0100 00 11111111 123 6788887643310112368899999999999999988852 1
Q ss_pred hhhhhhchHHHHHHHHHHHhhc----c--CC-cEEeCCCCChhhHHHHHHH
Q psy6661 120 KLQDNLQCEIFQTILEEARDSY----K--ED-IVVSLPSNTHDDMSSNVTS 163 (172)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~----~--~~-~~i~~~~~~~~e~~~~i~~ 163 (172)
. .+.+...+.++...+ . ++ .+|++++.+++++.+++.+
T Consensus 160 ~------~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~ 204 (208)
T 3ake_A 160 A------YEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLA 204 (208)
T ss_dssp C------HHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHH
Confidence 1 111333344433333 2 34 7888877899999444443
No 25
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.73 E-value=3.5e-17 Score=115.12 Aligned_cols=143 Identities=22% Similarity=0.294 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc------ccccccccccCC-C----------CcchhH---
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN------QFYLKYDEQYEC-P----------ELDEDK--- 65 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~------~~~~~~~~~~~~-~----------~~~~~~--- 65 (172)
+-.+|+|+|++||||||+++.|++++| ++++++|.++++. .++..+++.... . +|....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg-~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~ 89 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG-AHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLK 89 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC-CEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHH
Confidence 456899999999999999999999889 9999999997654 112222322211 0 111111
Q ss_pred HHH---------HHHHHHhc-C-CcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHH
Q psy6661 66 LLD---------ELEPRVQG-G-GKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQ 131 (172)
Q Consensus 66 ~~~---------~~~~~~~~-~-~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~ 131 (172)
.++ .+...+.. + .++++. +.+++. ..++.+|||+||++++.+|+..+ + +.
T Consensus 90 ~l~~i~hP~i~~~~~~~~~~~~~~vv~d~--pll~e~~~~~~~d~vi~v~a~~e~r~~Rli~~-------------q-~~ 153 (192)
T 2grj_A 90 KLELLVHPLMKKRVQEIINKTSGLIVIEA--ALLKRMGLDQLCDHVITVVASRETILKRNREA-------------D-RR 153 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEEC--TTTTTTTGGGGCSEEEEEECCHHHHHHHCSSH-------------H-HH
T ss_pred HHHhhhCHHHHHHHHHHHHHcCCEEEEEE--eceeecChHHhCCEEEEEECCHHHHHHHHHHh-------------c-CC
Confidence 111 11111222 3 245554 444432 34688999999999999999110 0 11
Q ss_pred HHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 132 TILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
.++.+. ...++++|+++ .+++++..++.++++.+
T Consensus 154 ~~~~~~--~~~AD~vI~n~-~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 154 LKFQED--IVPQGIVVANN-STLEDLEKKVEEVMKLV 187 (192)
T ss_dssp HTTCTT--CCCCSEEEECS-SCHHHHHHHHHHHHHHH
T ss_pred chhhhH--HhcCCEEEECC-CCHHHHHHHHHHHHHHH
Confidence 101111 11257888765 68999988888888776
No 26
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=115.09 Aligned_cols=157 Identities=19% Similarity=0.269 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-ccccc------ccCCCCcchhHHHHHHH----HHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDE------QYECPELDEDKLLDELE----PRV 74 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~----~~~ 74 (172)
++++|+|+|+|||||||+++.|+++++ +++++.|++++..... ...+. ......+ ...+...+. ...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~i~~~~ 88 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG-FTHLSTGELLREELASESERSKLIRDIMERGDLVP-SGIVLELLKEAMVASL 88 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC-HHHHHHHHHHHHhccc
Confidence 467899999999999999999999999 9999999987653100 00000 0011111 122222222 222
Q ss_pred hcC-CcEEeecccc-----cCCc--CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhh--hchHHHHHHHHHHHh---hc
Q psy6661 75 QGG-GKIIDYHSAE-----MFPE--RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDN--LQCEIFQTILEEARD---SY 141 (172)
Q Consensus 75 ~~~-~~ii~~~~~~-----~~~~--~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~--~~~~~~~~~~~~~~~---~~ 141 (172)
..+ ++|+|+.... .+.. ..++.+|||+||++++.+|+..|+......... .-.+.+...+....+ .|
T Consensus 89 ~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 168 (199)
T 2bwj_A 89 GDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYY 168 (199)
T ss_dssp TSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 5777753211 1111 146889999999999999999987421111110 001112222332221 23
Q ss_pred c--CC-cEEeCCCCChhhHHHHHHHHH
Q psy6661 142 K--ED-IVVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 142 ~--~~-~~i~~~~~~~~e~~~~i~~i~ 165 (172)
. .. .+++ ++.+++++.+.+..++
T Consensus 169 ~~~~~~~~id-~~~~~e~v~~~i~~~l 194 (199)
T 2bwj_A 169 ETKTQLHKIN-AEGTPEDVFLQLCTAI 194 (199)
T ss_dssp HHHSEEEEEE-TTSCHHHHHHHHHHHH
T ss_pred HhcCCEEEEE-CCCCHHHHHHHHHHHH
Confidence 2 22 4566 4678899955554444
No 27
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.73 E-value=5.6e-16 Score=110.85 Aligned_cols=153 Identities=17% Similarity=0.222 Sum_probs=90.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-------cc--------------cc----------ccccc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-------QF--------------YL----------KYDEQ 55 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-------~~--------------~~----------~~~~~ 55 (172)
+.+|+|+|++||||||+++.|++++| +++++.|.+++.. +. |. ..++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g-~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~ 81 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS-MIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED 81 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-CEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-CceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence 46899999999999999999999999 9999999997641 11 10 01111
Q ss_pred cCCCCcch--hH----------HHHHH---HHHHh-cCCcEEeecccc--cCCcCCcCEEEEEeCChHHHHHHHHh----
Q psy6661 56 YECPELDE--DK----------LLDEL---EPRVQ-GGGKIIDYHSAE--MFPERWIDQVYVLSADNTTLYDRLVE---- 113 (172)
Q Consensus 56 ~~~~~~~~--~~----------~~~~~---~~~~~-~~~~ii~~~~~~--~~~~~~~~~~i~l~~~~~~~~~Rl~~---- 113 (172)
....+.+. .. +.+.+ ...++ .+++|+++.... +++ .++.+|||+||++++.+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~~~~~~--~~~~vi~l~a~~e~~~~R~~~~~~~ 159 (219)
T 2h92_A 82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLP--DADLKVYMIASVEERAERRYKDNQL 159 (219)
T ss_dssp CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCCCCCCT--TCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCccceecC--CCCEEEEEECCHHHHHHHHHHHHHh
Confidence 11111000 00 01111 12233 356888875322 232 247899999999999999753
Q ss_pred cCCCCchhhhhhchHHHHHHHHHHH---------hhcc-CC-cEEeCCCCChhhHHHHHHHHHHHHHhcC
Q psy6661 114 KGQSGKKLQDNLQCEIFQTILEEAR---------DSYK-ED-IVVSLPSNTHDDMSSNVTSIIQFVKQWK 172 (172)
Q Consensus 114 r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~-~~i~~~~~~~~e~~~~i~~i~~~~~~~~ 172 (172)
|+... ..+.+...+..+. +.|. .+ .+|++++.+++++ ++.|.+.+..+|
T Consensus 160 r~~~~-------~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~---~~~I~~~l~~~~ 219 (219)
T 2h92_A 160 RGIES-------NFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEV---TDEILAMVSQIK 219 (219)
T ss_dssp TTCCC-------CHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHH---HHHHHHHHHTC-
T ss_pred cCccc-------CHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHH---HHHHHHHHhccC
Confidence 34210 1111222233222 3343 34 7888888899999 666666666543
No 28
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.73 E-value=9.7e-17 Score=115.28 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=91.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHh---hc----ccccccccccCCCC-------------------
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAR---EN----QFYLKYDEQYECPE------------------- 60 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~---~~----~~~~~~~~~~~~~~------------------- 60 (172)
..+|.|+|++||||||+++.|++++| +++++.|.+.. +. ..+...++.....+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg-~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG-IHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSPN 92 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT-CEEECHHHHHHHHHCC-------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC-CcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccccc
Confidence 46899999999999999999999999 99999554432 11 11222222111100
Q ss_pred ---cchhHHH----HHHHHHHhcCCcEEeeccc-ccC---CcCCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhhchH
Q psy6661 61 ---LDEDKLL----DELEPRVQGGGKIIDYHSA-EMF---PERWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNLQCE 128 (172)
Q Consensus 61 ---~~~~~~~----~~~~~~~~~~~~ii~~~~~-~~~---~~~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~~~~ 128 (172)
...+.++ +.+.++...+++|+.+... ..+ +.....++|||++|++++.+|+..+. .+... ..+
T Consensus 93 ~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~-----a~~ 167 (223)
T 3hdt_A 93 DKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDCIDEER-----AKR 167 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHTCCHHH-----HHH
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCCCCeEEEEEECCHHHHHHHHHHhcCCCHHH-----HHH
Confidence 0011122 2223333457777775332 233 32222578999999999999998763 21111 112
Q ss_pred HHHHHHHHHHhhcc------------CCcEEeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 129 IFQTILEEARDSYK------------EDIVVSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 129 ~~~~~~~~~~~~~~------------~~~~i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
.+.....++.+.|. .+.+|+++..+++++ ++.|++.++.
T Consensus 168 ~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eev---v~~I~~~i~~ 218 (223)
T 3hdt_A 168 RIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEET---AELIKAYIRL 218 (223)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHH---HHHHHHHHHH
Confidence 24444445554443 479999999999999 6666666654
No 29
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.73 E-value=4.5e-18 Score=119.34 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=69.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-cccccccccCCCCcc--hhHHHHHHHHHHhcC-Cc
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDEQYECPELD--EDKLLDELEPRVQGG-GK 79 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~ 79 (172)
|+++.+|+|+|+|||||||+++.|+++++ +++++.|.+..... .+...+..+...... ...+...+...+..| ++
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 80 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLR-LPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL 80 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHT-CCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcC-CeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence 34567899999999999999999999999 99999988854321 010000000000000 011222334445454 57
Q ss_pred EEeecccc------c--CCc--CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 80 IIDYHSAE------M--FPE--RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 80 ii~~~~~~------~--~~~--~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
|+|+.... + +.. ..++.+|||+||++++.+|+..|+
T Consensus 81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 77765421 1 111 224578999999999999998886
No 30
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.73 E-value=8.6e-17 Score=115.87 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=69.2
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-ccccc---c---cCCCCcchhHHHHHHHHH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDE---Q---YECPELDEDKLLDELEPR 73 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~---~---~~~~~~~~~~~~~~~~~~ 73 (172)
|..+.++.+|+|+|+|||||||+++.|+++++ +++++.|++++....- ...+. + .....+ .......+.+.
T Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~-~~~~~~~~~~~ 78 (227)
T 1zd8_A 1 MGASARLLRAVIMGAPGSGKGTVSSRITTHFE-LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIP-DDVMTRLALHE 78 (227)
T ss_dssp ------CCEEEEEECTTSSHHHHHHHHHHHSS-SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCC-HHHHHHHHHHH
T ss_pred CCccccCcEEEEECCCCCCHHHHHHHHHHHcC-CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCC-HHHHHHHHHHH
Confidence 66777789999999999999999999999999 9999999987753100 00010 0 011222 12222223233
Q ss_pred Hh---cCCcEEeeccccc-----CC-cCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 74 VQ---GGGKIIDYHSAEM-----FP-ERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 74 ~~---~~~~ii~~~~~~~-----~~-~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
+. ..++|+++..... +. ...++.+|||+++++++.+|+..|
T Consensus 79 l~~~~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R 128 (227)
T 1zd8_A 79 LKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTAR 128 (227)
T ss_dssp HHTCTTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCE
T ss_pred HhcccCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcC
Confidence 32 3467887743221 11 134688999999999999999877
No 31
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.72 E-value=2.1e-16 Score=115.67 Aligned_cols=38 Identities=32% Similarity=0.614 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAR 44 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~ 44 (172)
++.+|.|+|++||||||+++.|+++|| +.+++.+.+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg-~~~~d~g~i~r 63 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN-WRLLDSGAIYR 63 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT-CEEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-CCcCCCCceeh
Confidence 467899999999999999999999999 99999998873
No 32
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.72 E-value=1.1e-16 Score=113.38 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=81.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---------cccccccccCC------------CCcchhHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---------FYLKYDEQYEC------------PELDEDKL 66 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---------~~~~~~~~~~~------------~~~~~~~~ 66 (172)
++|+|+|++||||||+++.|++ +| +++++.|++.++.. ++..+++.... ..+.....
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g-~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 79 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG-AYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEK 79 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT-CEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC-CEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHH
Confidence 5899999999999999999999 89 99999999876531 11111111100 01111111
Q ss_pred HHHHH------------HHHh--c--CCcEEeecccccCC---cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhch
Q psy6661 67 LDELE------------PRVQ--G--GGKIIDYHSAEMFP---ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQC 127 (172)
Q Consensus 67 ~~~~~------------~~~~--~--~~~ii~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~ 127 (172)
...+. ..+. . +.+|+++.. +++ ...++.+|||+||++++.+|+..|+.+...+...
T Consensus 80 ~~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~--l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~--- 154 (204)
T 2if2_A 80 LRKLEEITHRALYKEIEKITKNLSEDTLFILEASL--LVEKGTYKNYDKLIVVYAPYEVCKERAIKRGMSEEDFERR--- 154 (204)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSC--STTTTCGGGSSEEEEECCCHHHHHHHHHHTCCCHHHHHHH---
T ss_pred HHHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccc--cccCCchhhCCEEEEEECCHHHHHHHHHHcCCCHHHHHHH---
Confidence 11111 1111 2 345666542 222 2346889999999999999999985332221111
Q ss_pred HHHHHHHHHHHhhc-cCCcEEeCCCCChhhHHHHHHHHH
Q psy6661 128 EIFQTILEEARDSY-KEDIVVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 128 ~~~~~~~~~~~~~~-~~~~~i~~~~~~~~e~~~~i~~i~ 165 (172)
+...+.. ...+ .++++|+++ .+++++.+++..++
T Consensus 155 --~~~~~~~-~~~~~~ad~vId~~-~~~~~~~~~i~~~l 189 (204)
T 2if2_A 155 --WKKQMPI-EEKVKYADYVIDNS-GSIEETYKQVKKVY 189 (204)
T ss_dssp --HTTSCCH-HHHGGGCSEECCCS-SCHHHHHHHHHHHH
T ss_pred --HHhCCCh-hHHHhcCCEEEECC-CCHHHHHHHHHHHH
Confidence 1111110 1111 145666654 68888854444443
No 33
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.72 E-value=1e-16 Score=115.71 Aligned_cols=154 Identities=15% Similarity=0.210 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-------ccccc-----------cccc------CCCC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-------FYLKY-----------DEQY------ECPE 60 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-------~~~~~-----------~~~~------~~~~ 60 (172)
+++.+|.|+|+|||||||+++.|++++| +++++.+.+.+... +.... ...+ ...+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg-~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALG-ARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF 85 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence 4567899999999999999999999999 99999988865421 10000 0000 0000
Q ss_pred cc----------h----------------hHHHHHHHHHHhc-CCcEEeeccc--ccCCcCCcCEEEEEeCChHHHHHHH
Q psy6661 61 LD----------E----------------DKLLDELEPRVQG-GGKIIDYHSA--EMFPERWIDQVYVLSADNTTLYDRL 111 (172)
Q Consensus 61 ~~----------~----------------~~~~~~~~~~~~~-~~~ii~~~~~--~~~~~~~~~~~i~l~~~~~~~~~Rl 111 (172)
++ + ..+...-..+... +++|+++... ..++. .++.|||++|++++.+|.
T Consensus 86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pd--a~lkifl~A~~e~Ra~Rr 163 (233)
T 3r20_A 86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPD--ADVKIFLTASAEERARRR 163 (233)
T ss_dssp ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTT--CSEEEEEECCHHHHHHHH
T ss_pred ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCC--CCEEEEEECCHHHHHHHH
Confidence 00 0 1122222233345 7789988633 24543 468899999999999988
Q ss_pred Hhc----CC--CCchhhhhhchHHHHHHHHHHHhhcc-----C--CcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 112 VEK----GQ--SGKKLQDNLQCEIFQTILEEARDSYK-----E--DIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 112 ~~r----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
.+. +. +.+..... +...-......+. . +.+||+++++++++ ++.|+++++
T Consensus 164 ~~~l~~~~~~~~~~~~~~~-----i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~---v~~I~~~i~ 226 (233)
T 3r20_A 164 NAQNVANGLPDDYATVLAD-----VQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQV---IAHLLDLVT 226 (233)
T ss_dssp HHHHHHTTCCCCHHHHHHH-----HHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHH---HHHHHHHC-
T ss_pred HHHHHhccCCCCHHHHHHH-----HHHHHHhhhhccccccccccCcEEEECCCCCHHHH---HHHHHHHHH
Confidence 652 21 11111111 1111111111111 1 29999999999999 666666654
No 34
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.72 E-value=4.7e-17 Score=114.15 Aligned_cols=158 Identities=18% Similarity=0.297 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc--ccccc------ccCCCCcch---hHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY--LKYDE------QYECPELDE---DKLLDELEPRV 74 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~--~~~~~------~~~~~~~~~---~~~~~~~~~~~ 74 (172)
++.+|+|+|+|||||||+++.|+++++ +++++.|++++..... ...+. ......++. ..+...+...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 80 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG-YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTM 80 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhh
Confidence 357899999999999999999999999 9999999987653100 00000 001111111 11222222222
Q ss_pred ---h-cCCcEEeeccccc-----CC-----cCCcCEEEEEeCChHHHHHHHHhcCCC--CchhhhhhchHHHHHHHHHHH
Q psy6661 75 ---Q-GGGKIIDYHSAEM-----FP-----ERWIDQVYVLSADNTTLYDRLVEKGQS--GKKLQDNLQCEIFQTILEEAR 138 (172)
Q Consensus 75 ---~-~~~~ii~~~~~~~-----~~-----~~~~~~~i~l~~~~~~~~~Rl~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 138 (172)
. .+.+|+|+..... +. ...++.+|||+||++++.+|+.+|+.. +...........+..++....
T Consensus 81 ~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~ 160 (196)
T 1tev_A 81 AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTK 160 (196)
T ss_dssp HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHH
Confidence 1 2346677543211 10 113578999999999999999887421 111111111112333333322
Q ss_pred h---hcc--CCc-EEeCCCCChhhHHHHHHHHH
Q psy6661 139 D---SYK--EDI-VVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 139 ~---~~~--~~~-~i~~~~~~~~e~~~~i~~i~ 165 (172)
+ .|. +.. +||++ .+++++.+.|..++
T Consensus 161 ~~~~~y~~~~~~~~id~~-~~~~~v~~~i~~~l 192 (196)
T 1tev_A 161 PIIDLYEEMGKVKKIDAS-KSVDEVFDEVVQIF 192 (196)
T ss_dssp HHHHHHHHTTCEEEEETT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHH
Confidence 1 233 233 67765 78999955555444
No 35
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.71 E-value=7.3e-17 Score=117.53 Aligned_cols=110 Identities=16% Similarity=0.257 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccc-ccccccc----C-CCCcchhHHHHHHHHHHhc--
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFY-LKYDEQY----E-CPELDEDKLLDELEPRVQG-- 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~-~~~~~~~----~-~~~~~~~~~~~~~~~~~~~-- 76 (172)
.++.+|+|+|+|||||||+++.|+++++ +++++.+++++....- ...+... . ........+...+...+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g-~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC-YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC-CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence 4567899999999999999999999999 9999999998863100 0001100 0 1111223334444444332
Q ss_pred --CCcEEeecccccC-----C------cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 77 --GGKIIDYHSAEMF-----P------ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 77 --~~~ii~~~~~~~~-----~------~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.++++|+...... . ...++.+|+|++|++++.+|+..|.
T Consensus 106 ~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 106 CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 3578877322211 0 1336889999999999999999885
No 36
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.71 E-value=1.1e-16 Score=113.15 Aligned_cols=110 Identities=22% Similarity=0.292 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-ccccccccc------cCCCCcchhHHHHHHHHHH---
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-QFYLKYDEQ------YECPELDEDKLLDELEPRV--- 74 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--- 74 (172)
..+.+|+|+|+|||||||+++.|+++++ +++++.|++++.. ......+.. .....+ .......+.+.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~-~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG-IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP-SDLTNELVDDRLNNP 95 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT-CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CcEEehhHHHHHHHHcCChHHHHHHHHHHcCCccc-HHHHHHHHHHHHhcc
Confidence 3456899999999999999999999999 9999999987752 000000000 011122 122222232222
Q ss_pred -hcCCcEEeecccc---------cCC--cCCcCEEEEEeCChHHHHHHHHhcCC
Q psy6661 75 -QGGGKIIDYHSAE---------MFP--ERWIDQVYVLSADNTTLYDRLVEKGQ 116 (172)
Q Consensus 75 -~~~~~ii~~~~~~---------~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~ 116 (172)
..+++|+++.... ++. ...++.+|||+||++++.+|+..|++
T Consensus 96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r 149 (201)
T 2cdn_A 96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR 149 (201)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 2346788863221 111 12367899999999999999999863
No 37
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.71 E-value=7.1e-17 Score=111.92 Aligned_cols=149 Identities=12% Similarity=0.071 Sum_probs=83.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe--hhhHHhhccc-ccc--cccccCC--CCc---ch----hHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID--VNKIARENQF-YLK--YDEQYEC--PEL---DE----DKLLDELEP 72 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~--~d~~~~~~~~-~~~--~~~~~~~--~~~---~~----~~~~~~~~~ 72 (172)
+.+|+|+|+|||||||+++.|+++++ .++++ .|.+...... ... .+..+.. ... +. ..+...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP-EPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS-SCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-CCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 46899999999999999999999998 77764 7776543211 100 0000000 000 00 112222344
Q ss_pred HHhcC-CcEEeeccc---c----cCC--cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhc-
Q psy6661 73 RVQGG-GKIIDYHSA---E----MFP--ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY- 141 (172)
Q Consensus 73 ~~~~~-~~ii~~~~~---~----~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~- 141 (172)
....| ++|++.... . +.. ...+-.+|||+||++++.+|+..|+.. +..... ..+ +....+
T Consensus 82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~-~~~~~~-------~~~-~~~~~~~ 152 (178)
T 1qhx_A 82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDR-VAGMAA-------KQA-YVVHEGV 152 (178)
T ss_dssp HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSS-CTTHHH-------HHT-TGGGTTC
T ss_pred HHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCc-ccchhh-------hhc-hhhccCC
Confidence 44455 467776321 1 000 111124688999999999999998632 211110 001 111112
Q ss_pred cCCcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 142 KEDIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 142 ~~~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
..+++||+++.+++++ ++.|++++
T Consensus 153 ~~d~~idt~~~~~~~~---~~~I~~~l 176 (178)
T 1qhx_A 153 EYDVEVDTTHKESIEC---AWAIAAHV 176 (178)
T ss_dssp CCSEEEETTSSCHHHH---HHHHHTTC
T ss_pred CCcEEEECCCCCHHHH---HHHHHHHh
Confidence 2578999999999998 66665543
No 38
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.71 E-value=4.1e-17 Score=113.88 Aligned_cols=108 Identities=16% Similarity=0.269 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-ccccccccc----c--CCCCcchhHHHHHHHHHHhcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-QFYLKYDEQ----Y--ECPELDEDKLLDELEPRVQGG 77 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~ 77 (172)
+++.+|+|+|+|||||||+++.|++++| +++++.|++++.. ..-...+.. + ....+ .......+.+.+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~l~~~ 79 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG-FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVP-DDLILELIREELAER 79 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT-CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC-HHHHHHHHHHHCCSE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCC-HHHHHHHHHHHhcCC
Confidence 4556899999999999999999999999 9999999887643 000000000 0 11111 222333444444333
Q ss_pred CcEEeeccccc---------CCc--CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 78 GKIIDYHSAEM---------FPE--RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 78 ~~ii~~~~~~~---------~~~--~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+|+++..... +.. ..++.+|||+||++++.+|+..|.
T Consensus 80 -~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 80 -VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp -EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred -EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 7777532211 111 125789999999999999998874
No 39
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.71 E-value=2.1e-16 Score=112.93 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=67.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccc-ccc----cccCCC-CcchhHHHHHHHHHHh----cCC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL-KYD----EQYECP-ELDEDKLLDELEPRVQ----GGG 78 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~-~~~----~~~~~~-~~~~~~~~~~~~~~~~----~~~ 78 (172)
+|+|+|+|||||||+++.|++++| +++++.|++++..-.-. ..+ .-+... ......+...+...+. ..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 589999999999999999999999 99999999987630000 000 001111 1112233333333332 246
Q ss_pred cEEeeccccc-----CC------cCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 79 KIIDYHSAEM-----FP------ERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 79 ~ii~~~~~~~-----~~------~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
+++++..... +. ...++.+|+|++|++++.+|+..|
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 7888642211 11 123678999999999999999998
No 40
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.71 E-value=4e-16 Score=108.50 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE-ehhhHHhhc-ccccccccccCCCCcch-hHHHHHHHHHHhc-CC-c
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWI-DVNKIAREN-QFYLKYDEQYECPELDE-DKLLDELEPRVQG-GG-K 79 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i-~~d~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~ 79 (172)
+++.+|+|+|+|||||||+++.|+++++ ++++ +.+..-... ..+. .+.......... ..+.+.+...+.. ++ +
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i~d~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~v 80 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP-GSFVFEPEEMGQALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREAAGPL 80 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST-TCEECCTHHHHHHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHCSSCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC-CCEEEchhhhHHHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhCCCcE
Confidence 3567999999999999999999999999 9888 432221110 1222 111110000001 2233444455554 44 4
Q ss_pred EEeecccc---------cCCcC-CcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhccCCcEEeC
Q psy6661 80 IIDYHSAE---------MFPER-WIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYKEDIVVSL 149 (172)
Q Consensus 80 ii~~~~~~---------~~~~~-~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 149 (172)
+++..... .+... ..-..|||+||++++.+|+..|.. ++.. .+.+..++....+. ..+.+||+
T Consensus 81 i~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~--r~~~----~~~~~~~~~~~~~~-~~~~~Id~ 153 (183)
T 2vli_A 81 IVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ--PQVN----VGTVEDRLNELRGE-QFQTHIDT 153 (183)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC------CC----HHHHHHHHHHHTSG-GGCSEEEC
T ss_pred EEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccc--cchh----HHHHHHHHHhhccc-ccceEeeC
Confidence 55643210 11111 112349999999999999998862 1211 12233434433222 22348888
Q ss_pred CCCChhhHHHHHHHHHHHHHh
Q psy6661 150 PSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 150 ~~~~~~e~~~~i~~i~~~~~~ 170 (172)
++.+++++ +++|++.+.+
T Consensus 154 ~~~~~~~~---~~~I~~~l~~ 171 (183)
T 2vli_A 154 AGLGTQQV---AEQIAAQVGL 171 (183)
T ss_dssp TTCCHHHH---HHHHHHHHTC
T ss_pred CCCCHHHH---HHHHHHHHHH
Confidence 87899999 5666666543
No 41
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.70 E-value=5e-16 Score=110.34 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=73.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-cccccc------ccCCCCcchhHHHHHHHHHHhc-CCc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDE------QYECPELDEDKLLDELEPRVQG-GGK 79 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (172)
.+|+|.|||||||+|+|+.|++++| ++++++++++++.-. -...+. .....+ ..+.+...+.+.+.. +++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g-~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lv-pd~iv~~lv~~~l~~~~~~ 78 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG-FVHISTGDILREAVQKGTPLGKKAKEYMERGELV-PDDLIIALIEEVFPKHGNV 78 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCC-CHHHHHHHHHHHCCSSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcC-CHHHHHHHHHHhhccCCce
Confidence 3689999999999999999999999 999999999876400 000010 112222 234455555555544 578
Q ss_pred EEeeccccc-----CC------cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 80 IIDYHSAEM-----FP------ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 80 ii~~~~~~~-----~~------~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
++|+..+.. +. ...++.+|+|+||.+++.+|+..|.
T Consensus 79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 898854322 11 1235789999999999999999883
No 42
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.70 E-value=6.8e-16 Score=110.43 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---------cccccccccCC--CCcchhHH--------
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---------FYLKYDEQYEC--PELDEDKL-------- 66 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---------~~~~~~~~~~~--~~~~~~~~-------- 66 (172)
++.+|+|+|++||||||+++.|++ +| +++++.|.+.+... ++...++.... ..++...+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg-~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~ 80 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LG-INVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANP 80 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TT-CEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cC-CEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCH
Confidence 456899999999999999999998 89 99999999876531 11111222111 00111110
Q ss_pred -----HHH---------HHHHHh--cCC-cEEeecccccCC---cCCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhh
Q psy6661 67 -----LDE---------LEPRVQ--GGG-KIIDYHSAEMFP---ERWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNL 125 (172)
Q Consensus 67 -----~~~---------~~~~~~--~~~-~ii~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~ 125 (172)
++. +...+. .++ ++++.. .+++ ...++.+|||+||++++.+|+..|. .+...
T Consensus 81 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~--~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~----- 153 (218)
T 1vht_A 81 EEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVP--LLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREH----- 153 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECT--TTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEee--eeeccCccccCCEEEEEECCHHHHHHHHHHcCCCCHHH-----
Confidence 111 011122 233 344432 2222 1346899999999999999999874 21111
Q ss_pred chHHHHHHHHHHHhh----ccCCcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 126 QCEIFQTILEEARDS----YKEDIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 126 ~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
+...+..+... ..++.+|+++. +++++.+.+..++..+
T Consensus 154 ----~~~~~~~~~~~~~~~~~ad~vId~~~-~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 154 ----VEQILAAQATREARLAVADDVIDNNG-APDAIASDVARLHAHY 195 (218)
T ss_dssp ----HHHHHHHSCCHHHHHHHCSEEEECSS-CTTSHHHHHHHHHHHH
T ss_pred ----HHHHHHhcCChHHHHHhCCEEEECCC-CHHHHHHHHHHHHHHH
Confidence 11112111100 11468888876 8899977766666543
No 43
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.69 E-value=3.7e-16 Score=116.07 Aligned_cols=153 Identities=17% Similarity=0.225 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc---------cccccccccCC------------CCcchh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ---------FYLKYDEQYEC------------PELDED 64 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~---------~~~~~~~~~~~------------~~~~~~ 64 (172)
++.+|+|+|+|||||||+|+.|+ .+| ++++++|++.+... +...++..... .+|...
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg-~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLG-AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHT-CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCC-CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 46789999999999999999999 579 99999999865420 00011111100 011110
Q ss_pred HHH----------------HHHHHHHhc--CCcEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcC-CCCchhh
Q psy6661 65 KLL----------------DELEPRVQG--GGKIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQ 122 (172)
Q Consensus 65 ~~~----------------~~~~~~~~~--~~~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~ 122 (172)
... +.+...... ..+|+++.. +++. ..++.+|||+||++++.+|+..|. .+.+...
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~--l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~ 229 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAM--LLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQ 229 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTT--TTTTTGGGGCSEEEEEECCHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEech--hhccchHHhCCEEEEEcCCHHHHHHHHHHcCCCCHHHHH
Confidence 100 111111122 245667643 3332 336889999999999999999883 2222111
Q ss_pred hhhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 123 DNLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
...... +. ..+... .++++|+++. +++++.+++..++..+
T Consensus 230 ~ri~~q-~~--~~~~~~--~AD~vIdn~~-s~eel~~~I~~~l~~l 269 (281)
T 2f6r_A 230 SRLQSQ-MS--GQQLVE--QSNVVLSTLW-ESHVTQSQVEKAWNLL 269 (281)
T ss_dssp HHHHTS-CC--HHHHHH--TCSEEEECSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHc-CC--hHhhHh--hCCEEEECCC-CHHHHHHHHHHHHHHH
Confidence 111100 00 011111 2467887764 8999987777777655
No 44
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.69 E-value=6.9e-16 Score=107.97 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=84.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhc---ccccccccccCCCCcc-hhHHHH----HHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIAREN---QFYLKYDEQYECPELD-EDKLLD----ELEPRV 74 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~ 74 (172)
|++|+|+|+|||||||+++.|++++++ +.+++.++++.+. ..+......+...... ...++. .+.+.+
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 80 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEA 80 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999998863 5677777776531 1111111111111111 022222 223333
Q ss_pred --hcC-CcEEeeccccc-------------CCcCCcCEEEEEeCChHHHHHH-HHh--cCCCCchhhhh-hchHHHHHHH
Q psy6661 75 --QGG-GKIIDYHSAEM-------------FPERWIDQVYVLSADNTTLYDR-LVE--KGQSGKKLQDN-LQCEIFQTIL 134 (172)
Q Consensus 75 --~~~-~~ii~~~~~~~-------------~~~~~~~~~i~l~~~~~~~~~R-l~~--r~~~~~~~~~~-~~~~~~~~~~ 134 (172)
..+ .+|+|+..... +....++.+|||++|++++.+| +.. |++......+. ...+.+...+
T Consensus 81 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~ 160 (194)
T 1nks_A 81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYA 160 (194)
T ss_dssp HHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHH
T ss_pred hccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHH
Confidence 344 46777642111 1111268899999999998865 767 65311101111 1112244445
Q ss_pred HHHHhhc-cCC-cEEeCCCCChhhHHHHHHHHHHHH
Q psy6661 135 EEARDSY-KED-IVVSLPSNTHDDMSSNVTSIIQFV 168 (172)
Q Consensus 135 ~~~~~~~-~~~-~~i~~~~~~~~e~~~~i~~i~~~~ 168 (172)
.+....| ... .+|+.++.+++++ +++|.+.+
T Consensus 161 ~~~~~~~~~~~~~~I~d~~~~~e~v---~~~I~~~l 193 (194)
T 1nks_A 161 ATASAVLAGSTVKVIVNVEGDPSIA---ANEIIRSM 193 (194)
T ss_dssp HHHHHHHHTCEEEEEECCSSCHHHH---HHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeCCCCCHHHH---HHHHHHHh
Confidence 5555444 222 3441445688888 55555443
No 45
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.69 E-value=1.7e-16 Score=116.08 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCce----------EEehhhHHhhccc----cccccc-ccCC-CCcchhHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLE----------WIDVNKIARENQF----YLKYDE-QYEC-PELDEDKLLDE 69 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~----------~i~~d~~~~~~~~----~~~~~~-~~~~-~~~~~~~~~~~ 69 (172)
++.+|+|+|+|||||||+|+.|++++| ++ +++.|++.+.... ....+. .+.. ..+|...+.+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg-~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG-QNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT-GGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh-hhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 466899999999999999999999999 88 7899998763210 000010 0100 01233334555
Q ss_pred HHHHHh-------------------------cCCcEEeecccccC-Cc---CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 70 LEPRVQ-------------------------GGGKIIDYHSAEMF-PE---RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 70 ~~~~~~-------------------------~~~~ii~~~~~~~~-~~---~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+..+.. ...+|+++.. ++ .. ..++.+|||+|+++++.+|+..|.
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~--~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 172 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL--AFYSQEVRDLFQMKLFVDTDADTRLSRRVLRD 172 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTT--TTSSHHHHHHCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeec--cccCHHHHHhcCeeEEEeCCHHHHHHHHHHHH
Confidence 554431 1235666632 22 21 235889999999999999998773
No 46
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.69 E-value=4.6e-16 Score=107.62 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccc-ccccccCCC-Ccc-hhHHHHHHHHHHhcC-CcE
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL-KYDEQYECP-ELD-EDKLLDELEPRVQGG-GKI 80 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~i 80 (172)
+++.+|+|+|+|||||||+++.|++.+| ..+++.|++........ ..+..+... ... ...+...+......+ ++|
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g-~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 84 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH-AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSL 84 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT-CEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC-cEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEE
Confidence 4567899999999999999999999999 99999988753210000 001111000 000 011111122222333 467
Q ss_pred Eeeccc-----ccCCcCCcC-EEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhh-cc--CCcEEeCCC
Q psy6661 81 IDYHSA-----EMFPERWID-QVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDS-YK--EDIVVSLPS 151 (172)
Q Consensus 81 i~~~~~-----~~~~~~~~~-~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~ 151 (172)
++.... ..+....++ .+|||+||++++.+|+..|+..... ...+...+...... |. ++.+||++
T Consensus 85 i~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Id~~- 157 (175)
T 1knq_A 85 IVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK------TQMLVTQFETLQEPGADETDVLVVDID- 157 (175)
T ss_dssp EECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCC------HHHHHHHHHHCCCCCTTCTTEEEEECS-
T ss_pred EEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCc------hHHHHHHHHhhhCcccCCCCeEEEeCC-
Confidence 764321 112222235 6899999999999999998632111 11122222221122 32 35778876
Q ss_pred CChhhHHHHHHHHHHHHH
Q psy6661 152 NTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 152 ~~~~e~~~~i~~i~~~~~ 169 (172)
.+++++ +++|.+.+.
T Consensus 158 ~~~~~~---~~~i~~~l~ 172 (175)
T 1knq_A 158 QPLEGV---VASTIEVIK 172 (175)
T ss_dssp SCHHHH---HHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHh
Confidence 688888 566665554
No 47
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.69 E-value=9.2e-17 Score=114.73 Aligned_cols=104 Identities=18% Similarity=0.321 Sum_probs=67.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccc-ccccc------cCCCCcchhHHHHHHHHHHh----cC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYL-KYDEQ------YECPELDEDKLLDELEPRVQ----GG 77 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~----~~ 77 (172)
+|+|+|+|||||||+++.|++++| +++++.|++++..-.-. ..+.. ..... ....+...+...+. ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE-IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLV-PDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcccCCC
Confidence 689999999999999999999999 99999999987630000 00000 01111 12233333333332 24
Q ss_pred CcEEeeccccc-----CCc------CCcCEEEEEeCChHHHHHHHHhc
Q psy6661 78 GKIIDYHSAEM-----FPE------RWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 78 ~~ii~~~~~~~-----~~~------~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
++|+++..... +.. ..++.+|||++|++++.+|+..|
T Consensus 80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 67888642211 111 12678999999999999999998
No 48
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.69 E-value=2.1e-16 Score=111.64 Aligned_cols=72 Identities=18% Similarity=0.115 Sum_probs=44.7
Q ss_pred CcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc---CCcEEeCCCCChhhHHHHHHHHH
Q psy6661 93 WIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK---EDIVVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 93 ~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~e~~~~i~~i~ 165 (172)
.++.+|||+||++++.+|+..|++...........+.+...+......|. +..+|++++ +++++.+.|..++
T Consensus 124 ~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~-~~~~v~~~I~~~l 198 (205)
T 2jaq_A 124 SFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL-DVKTQIELIMNKL 198 (205)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS-CHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC-CHHHHHHHHHHHH
Confidence 46889999999999999999886321110001112335555655555553 356777665 8888855544444
No 49
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.68 E-value=3.5e-16 Score=110.65 Aligned_cols=110 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc--cccccccc------cCCCCcc---hhHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ--FYLKYDEQ------YECPELD---EDKLLDELEPR 73 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~--~~~~~~~~------~~~~~~~---~~~~~~~~~~~ 73 (172)
.++.+|+|+|+|||||||+++.|++++| +++++.|++++... .-...++. .....++ ...+.+.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g-~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS-FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS-CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC-ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999 99999998876420 00000000 0111111 11233333444
Q ss_pred HhcC--CcEEeecccc-----cCCc--CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 74 VQGG--GKIIDYHSAE-----MFPE--RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 74 ~~~~--~~ii~~~~~~-----~~~~--~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+..| ++++++.... .+.. ..++.+|||+||++++.+|+..|+
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence 4444 4666653211 1111 126889999999999999998874
No 50
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.68 E-value=3.8e-15 Score=105.72 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=89.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc-CCceEEehhhHHhhcccccccccccCC----CCcchhHHHHHHHHHHh----
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC-DSLEWIDVNKIARENQFYLKYDEQYEC----PELDEDKLLDELEPRVQ---- 75 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~~i~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---- 75 (172)
.++.+|+|+|+|||||||+++.|++.+ + +.+++.|+++............+.. ..++...+.+.+...+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~-~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 97 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPN-CSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESARH 97 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTT-EEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCC-cEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCC
Confidence 456789999999999999999999988 7 9999999886543111100111110 01222334333332221
Q ss_pred ------------cCCcEEeecccccCC--cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhc
Q psy6661 76 ------------GGGKIIDYHSAEMFP--ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY 141 (172)
Q Consensus 76 ------------~~~~ii~~~~~~~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (172)
...+++++......+ ...++.++|++++++++.+|+..|+++.+........ .....|......+
T Consensus 98 ~~~~~~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~-~~~~~~~~~~~~~ 176 (207)
T 2qt1_A 98 SVVSTDQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDG-HVWPMYLKYRQEM 176 (207)
T ss_dssp SSCCC-----CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHH-THHHHHHHHHHHG
T ss_pred CCcCCCeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHH-HHhHHHHHHHHHH
Confidence 123566663321111 2456899999999999999998887543322111110 1111222222222
Q ss_pred c--CCcE--EeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 142 K--EDIV--VSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 142 ~--~~~~--i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
. ++.+ ||. +.+++++ .++|.+.+.+
T Consensus 177 ~~~~~~v~~Id~-~~~~eev---~~~I~~~l~~ 205 (207)
T 2qt1_A 177 QDITWEVVYLDG-TKSEEDL---FLQVYEDLIQ 205 (207)
T ss_dssp GGCSSCCEEEET-TSCHHHH---HHHHHHHHTT
T ss_pred HhcCCeEEEecC-CCCHHHH---HHHHHHHHHh
Confidence 2 3444 554 4588888 5555555543
No 51
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.68 E-value=1.5e-15 Score=109.03 Aligned_cols=109 Identities=18% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-ccccccc------cCCCCcchhHHHHHHHHHH---
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDEQ------YECPELDEDKLLDELEPRV--- 74 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~--- 74 (172)
.++.+|+|+|+|||||||+++.|+++++ +++++.|++++.... -...+.. ..... ....+...+.+.+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~-~~~~~~~~~~~~~~~~ 80 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQ-LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLV-PDEIVVNMVKERLRQP 80 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHC-CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcC-CHHHHHHHHHHHHhhc
Confidence 3567899999999999999999999999 999999998775200 0000000 01111 1222333233222
Q ss_pred --hcCCcEEeeccccc-----CCc--CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 75 --QGGGKIIDYHSAEM-----FPE--RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 75 --~~~~~ii~~~~~~~-----~~~--~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..+++|+++..... +.. ..++.+|||+++++++.+|+..|.
T Consensus 81 ~~~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~ 130 (222)
T 1zak_A 81 DAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRR 130 (222)
T ss_dssp HHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEE
T ss_pred cccCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 24577788632211 111 235889999999999999998774
No 52
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.67 E-value=1.8e-15 Score=109.58 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARE 45 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~ 45 (172)
+++.+|+|+|++||||||+++.|++++| +++++.|.+.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg-~~~~d~d~~~~~ 53 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG-FTYLDTGAMYRA 53 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC-CEEEEHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC-CceecCCCeeEc
Confidence 4567899999999999999999999999 999999999764
No 53
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.66 E-value=1.7e-15 Score=108.53 Aligned_cols=109 Identities=14% Similarity=0.224 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-cccccccc------cCCCCcchhHHHHHHHHHHh--
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDEQ------YECPELDEDKLLDELEPRVQ-- 75 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-- 75 (172)
+++.+|+|+|+|||||||+++.|+++++ +++++.|++++... .-...+.. .....+ ...+...+.+.+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~-~~~~~~~l~~~l~~~ 79 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH-AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS-DDIMVNMIKDELTNN 79 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC-ceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCC-HHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999 99999999987530 00000000 011121 2233333433332
Q ss_pred ---cCCcEEeeccccc---------CC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 76 ---GGGKIIDYHSAEM---------FP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 76 ---~~~~ii~~~~~~~---------~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.+++|+++..... +. ...++.+|||++|++++.+|+..|.
T Consensus 80 ~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 80 PACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp GGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred cccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 2467888622111 11 1236789999999999999998874
No 54
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.66 E-value=4.1e-16 Score=111.64 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-ccccccc------cCCCCcchhHHHHHHHHHHh---
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDEQ------YECPELDEDKLLDELEPRVQ--- 75 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~--- 75 (172)
++.+|+|+|+|||||||+++.|+++++ +++++.|++++.... -...+.. .....+ .+.....+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~-~~~~~~~i~~~l~~~~ 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG-LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVG-DEIVLGLVKEKFDLGV 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCC-HHHHHHHHHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC-ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCC-HHHHHHHHHHHHhccc
Confidence 457899999999999999999999999 999999999875310 0000100 011122 2223333333332
Q ss_pred -cCCcEEeecccc---------cCC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 76 -GGGKIIDYHSAE---------MFP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 76 -~~~~ii~~~~~~---------~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.+++|+|+.... ++. ...++.+|||++|++++.+|+..|.
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 246788863221 111 1246799999999999999999875
No 55
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.65 E-value=1.8e-15 Score=106.82 Aligned_cols=151 Identities=16% Similarity=0.239 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc------cccccccccC-CCCcchhHH-----------
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ------FYLKYDEQYE-CPELDEDKL----------- 66 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~------~~~~~~~~~~-~~~~~~~~~----------- 66 (172)
+++.+|+|+|++||||||+++.|++. | +++++.|++.+... ++..+ +... ...++...+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g-~~~id~d~~~~~~~~~~~~~i~~~~-~~~~~~g~i~~~~l~~~~~~~~~~~ 82 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-G-YPVLDLDALAARARENKEEELKRLF-PEAVVGGRLDRRALARLVFSDPERL 82 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-T-CCEEEHHHHHHHHHHHTHHHHHHHC-GGGEETTEECHHHHHHHHTTSHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-C-CEEEcccHHHHHhcCChHHHHHHHH-HHHHhCCCcCHHHHHHHHhCCHHHH
Confidence 35678999999999999999999998 9 99999998865421 11111 1100 000111111
Q ss_pred --HHH----------HHHHHhc-CC-cEEeecccccCCc---CCcCEEEEEeCChHHHHHHHHhcC-CCCchhhhhhchH
Q psy6661 67 --LDE----------LEPRVQG-GG-KIIDYHSAEMFPE---RWIDQVYVLSADNTTLYDRLVEKG-QSGKKLQDNLQCE 128 (172)
Q Consensus 67 --~~~----------~~~~~~~-~~-~ii~~~~~~~~~~---~~~~~~i~l~~~~~~~~~Rl~~r~-~~~~~~~~~~~~~ 128 (172)
+.. +...... ++ +++++ +.+++. ..++.+|||++|++++.+|+..|. .+...+.......
T Consensus 83 ~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~--~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~~~ 160 (203)
T 1uf9_A 83 KALEAVVHPEVRRLLMEELSRLEAPLVFLEI--PLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQ 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC--TTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTTS
T ss_pred HHHHHHhChHHHHHHHHHhhhcCCCEEEEEe--cceeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHC
Confidence 111 1111123 23 45554 333332 335889999999999999999884 2222211111110
Q ss_pred HHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHH
Q psy6661 129 IFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
+.. + .... .++.+|+++. +++++.+.+..++.
T Consensus 161 -~~~-~-~~~~--~ad~vId~~~-~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 161 -MPE-E-EKRK--RATWVLENTG-SLEDLERALKAVLA 192 (203)
T ss_dssp -CCH-H-HHHH--HCSEEECCSS-HHHHHHHHHHHHHH
T ss_pred -CCh-h-HHHH--hCCEEEECCC-CHHHHHHHHHHHHH
Confidence 000 1 1011 1456777665 88888555555443
No 56
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.64 E-value=7.6e-15 Score=106.10 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccc-cccccc------ccCCCCcchhHHHHHHHHHHhc-
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQF-YLKYDE------QYECPELDEDKLLDELEPRVQG- 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~- 76 (172)
.++.+|+|+|+|||||||+++.|+++++ +++++.|+++++... -...+. ......+ .+.....+...+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~-~~~~~~~i~~~l~~~ 91 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC-VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS-DEMVLELIEKNLETP 91 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHTSG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCC-HHHHHHHHHHHHhcc
Confidence 3567899999999999999999999999 999999998775200 000000 0011122 22233333333322
Q ss_pred ---CCcEEeecccc---------cCC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 77 ---GGKIIDYHSAE---------MFP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 77 ---~~~ii~~~~~~---------~~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+++|+|+.... ++. ...++.+|||+++++++.+|+..|.
T Consensus 92 ~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 92 PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 46788853211 111 1236899999999999999999874
No 57
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.64 E-value=6.4e-16 Score=113.58 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH---cCCceEE--ehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcCCc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ---CDSLEWI--DVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGGGK 79 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~---l~~~~~i--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
.++++|+|+|+|||||||+++.|++. +| ++++ +.|.+......+...++.. + .......+...+....+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~~~l~~~~~~~e~~---~--~~~~~~~i~~~l~~~~v 75 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIRESFPVWKEKYEEF---I--KKSTYRLIDSALKNYWV 75 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHHTTSSSCCGGGHHH---H--HHHHHHHHHHHHTTSEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCC-CEEEEECchHHHHHHhhhhHHHHHH---H--HHHHHHHHHHHhhCCEE
Confidence 45679999999999999999999997 78 8877 7777654321111000000 0 01112233344444556
Q ss_pred EEeecccc-----cCC-----cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHH---HHhhc--c-C
Q psy6661 80 IIDYHSAE-----MFP-----ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEE---ARDSY--K-E 143 (172)
Q Consensus 80 ii~~~~~~-----~~~-----~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~-~ 143 (172)
|+|+.... .+. ...++.+|||+||++++.+|+..|+...+ .+.+..++.. ....| . .
T Consensus 76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~-------~~~l~~~~~~~e~~~~~~~~~~~ 148 (260)
T 3a4m_A 76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP-------NEVIKKMYEKFDEPGKKYKWDEP 148 (260)
T ss_dssp EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSC-------HHHHHHHHHHCCCTTSSCGGGCC
T ss_pred EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHhcCccccCCCCCC
Confidence 77753211 011 12246789999999999999999872111 1223222222 11222 2 4
Q ss_pred CcEEeCCC-CChhhHHHHHHHHHHHHH
Q psy6661 144 DIVVSLPS-NTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 144 ~~~i~~~~-~~~~e~~~~i~~i~~~~~ 169 (172)
..+||+++ .+++++ ++.|.+.+.
T Consensus 149 ~~~Id~~~~~~~~ei---~~~I~~~l~ 172 (260)
T 3a4m_A 149 FLIIDTTKDIDFNEI---AKKLIEKSK 172 (260)
T ss_dssp SEEEETTSCCCHHHH---HHHHHHHHT
T ss_pred EEEEeCCCCCCHHHH---HHHHHhccc
Confidence 57788776 577777 666666553
No 58
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.63 E-value=6.7e-15 Score=104.33 Aligned_cols=110 Identities=20% Similarity=0.304 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCC----------------------ceEEehhhHHhhc--ccccccccccCCC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDS----------------------LEWIDVNKIAREN--QFYLKYDEQYECP 59 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~----------------------~~~i~~d~~~~~~--~~~~~~~~~~~~~ 59 (172)
|....+|+|+|+|||||||+++.|++.+++ +.+++.+.+.... +.|..........
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF 88 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence 567889999999999999999999998852 2223333332211 1221111111111
Q ss_pred CcchhHHHHHHHHHHhcCC-cEEeecc--cccCCcCCc--C-EEEEEe-CChHHHHHHHHhcCC
Q psy6661 60 ELDEDKLLDELEPRVQGGG-KIIDYHS--AEMFPERWI--D-QVYVLS-ADNTTLYDRLVEKGQ 116 (172)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~-~ii~~~~--~~~~~~~~~--~-~~i~l~-~~~~~~~~Rl~~r~~ 116 (172)
+ ......+...+..|. +|++... ...+....+ + .+|||. +|++++.+|+..|+.
T Consensus 89 ~---~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~ 149 (204)
T 2qor_A 89 Y---GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT 149 (204)
T ss_dssp E---EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT
T ss_pred e---cCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC
Confidence 1 111234455556664 5665321 111122223 3 679998 999999999999874
No 59
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.62 E-value=7.7e-15 Score=105.44 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=69.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-ccccccccc------cCCCCcchhHHHHHHHHHHhc---CC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-QFYLKYDEQ------YECPELDEDKLLDELEPRVQG---GG 78 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~ 78 (172)
+|+|+|+|||||||+++.|+++++ ++++++|++++.. ......+.. ..... ....+...+.+.+.. .+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg-~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~-~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS-LAHIESGGIFREHIGGGTELGKKAKEFIDRGDLV-PDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCC-CHHHHHHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcC-cHHHHHHHHHHHHhcccCCe
Confidence 699999999999999999999999 9999999998764 000001110 01111 123344444544443 46
Q ss_pred cEEeecccc-----cCC------cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 79 KIIDYHSAE-----MFP------ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 79 ~ii~~~~~~-----~~~------~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+|+|+.... .+. ...++.+|||++|++++.+|+..|+
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 788853221 111 1246889999999999999999886
No 60
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.62 E-value=4.3e-15 Score=106.67 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-ccccccc------ccCCCCcchhHHHHHHHHHHhc--
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDE------QYECPELDEDKLLDELEPRVQG-- 76 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-- 76 (172)
+-.++.|+|+|||||||+|+.|+++++ +++++++++++... --...+. .....+. .+.+...+.+.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g-~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvp-dei~~~ll~~~l~~~~ 84 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG-IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVP-DSLIIGLVKERLKEAD 84 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT-CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCC-HHHHHHHHHHHHHSGG
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC-CCeeechHHHHHhccCCChHHHHHHHHHhhccccc-cHHHHHHHHHHHhCcc
Confidence 356789999999999999999999999 99999999988630 0000111 0112222 33444555554432
Q ss_pred --CCcEEeeccccc-----CCc--CCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 77 --GGKIIDYHSAEM-----FPE--RWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 77 --~~~ii~~~~~~~-----~~~--~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
.++|+|+..... +.. ..++.+|+|+||++++.+|+..|.
T Consensus 85 ~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 85 CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 478999853322 111 246889999999999999999984
No 61
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.61 E-value=1.6e-14 Score=101.16 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=78.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc---CCceEEehhhHHhh------cccccccccccCCC---Cc-ch---hHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC---DSLEWIDVNKIARE------NQFYLKYDEQYECP---EL-DE---DKLLDELE 71 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i~~d~~~~~------~~~~~~~~~~~~~~---~~-~~---~~~~~~~~ 71 (172)
++|+|+|+|||||||+++.|++++ | ++++++|..... ...+.. + ..... .+ +. ..+.+.+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g-~~~i~~d~~~~~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~~~l~~~i~ 77 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKG-YFVSLYREPGGTKVGEVLREILLT-E-ELDERTELLLFEASRSKLIEEKII 77 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEESSCSSHHHHHHHHHHHH-S-CCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeCCCCCchHHHHHHHHcC-C-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999988 8 999987642100 011110 1 00000 00 00 01112223
Q ss_pred HHHhcCC-cEEeec---------ccccC------------C-cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchH
Q psy6661 72 PRVQGGG-KIIDYH---------SAEMF------------P-ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCE 128 (172)
Q Consensus 72 ~~~~~~~-~ii~~~---------~~~~~------------~-~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 128 (172)
+.+..+. ++++.. .+... . ...++.+|||+||++++.+|+..|+... .. ...+
T Consensus 78 ~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~---~~-~~~~ 153 (195)
T 2pbr_A 78 PDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFE---NK-EFLE 153 (195)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCC---CH-HHHH
T ss_pred HHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccc---hH-HHHH
Confidence 3344554 344410 01100 1 0147899999999999999998765311 11 1112
Q ss_pred HHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHH
Q psy6661 129 IFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~ 165 (172)
.+...|.+....+....+|++ +.+++++.+++.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~Id~-~~~~~~~~~~i~~~l 189 (195)
T 2pbr_A 154 KVRKGFLELAKEEENVVVIDA-SGEEEEVFKEILRAL 189 (195)
T ss_dssp HHHHHHHHHHHHSTTEEEEET-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEC-CCCHHHHHHHHHHHH
Confidence 233334443333322366665 568888844444433
No 62
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.60 E-value=8.4e-15 Score=104.19 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceE
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEW 36 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~ 36 (172)
|+++.+|+|+|+|||||||+++.|+++++ ...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~-~~~ 37 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC-AAG 37 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH-HTT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-HcC
Confidence 35678999999999999999999999876 443
No 63
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.60 E-value=1.8e-14 Score=102.23 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
|+..+|+|+|+|||||||+++.|+++++ ..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~-~~ 31 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIE-LK 31 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT-TT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh-hc
Confidence 4457899999999999999999999998 63
No 64
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.60 E-value=5.8e-15 Score=103.66 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=73.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc---CCceEEehhhH--------HhhcccccccccccCCC----Cc--chhHHHHHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC---DSLEWIDVNKI--------ARENQFYLKYDEQYECP----EL--DEDKLLDELE 71 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i~~d~~--------~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~ 71 (172)
+|+|+|++||||||+++.|++++ | ++++..+.. ++. .+. ....... .+ +....+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g-~~v~~~~~~~~~~~g~~~~~--~~~--~~~~~~~~~~~~~~~~r~~~~~~i~ 76 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KKVILKREPGGTETGEKIRK--ILL--EEEVTPKAELFLFLASRNLLVTEIK 76 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC-C-EEEEESSCSSHHHHHHHH--HHH--HSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEeeCCCCCcHHHHHHH--HHH--hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999998 8 888864331 111 110 0000000 00 0000111122
Q ss_pred HHHhcCCc-EEeec---------ccccCC-------------cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchH
Q psy6661 72 PRVQGGGK-IIDYH---------SAEMFP-------------ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCE 128 (172)
Q Consensus 72 ~~~~~~~~-ii~~~---------~~~~~~-------------~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~ 128 (172)
+.+..+.. ++|.. .+.... ...++.+|||++|++++.+|+..|+..... ...+
T Consensus 77 ~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~----~~~~ 152 (197)
T 2z0h_A 77 QYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKR----EFLE 152 (197)
T ss_dssp TC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCH----HHHH
T ss_pred HHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHH----HHHH
Confidence 23333433 33411 000000 124789999999999999999998532221 1112
Q ss_pred HHHHHHHHHHhhccCC-cEEeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 129 IFQTILEEARDSYKED-IVVSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~~i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
.+...|.+....+... .+|| ++.+++++ .+++.+.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Id-~~~~~e~~---~~~i~~~l~~ 191 (197)
T 2z0h_A 153 RVREGYLVLAREHPERIVVLD-GKRSIEEI---HRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHHHHCTTTEEEEE-TTSCHHHH---HHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEe-CCCCHHHH---HHHHHHHHHH
Confidence 2333344444444333 4455 45688888 5555555543
No 65
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.59 E-value=3.4e-15 Score=107.77 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=78.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCC-ceEEehhh--------HHhhcccccccccccCCCCcchh--HHHHH---
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDS-LEWIDVNK--------IARENQFYLKYDEQYECPELDED--KLLDE--- 69 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~-~~~i~~d~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--- 69 (172)
+.++.+|+|.|+|||||||+++.|++.++. +.++.... .++. +... +.. ++.. .++-.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~--~~~~-~~~-----~~~~~~~ll~~a~r 94 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRK--IVLE-GND-----MDIRTEAMLFAASR 94 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHH--HTTC---------CCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHH--HHhC-CCC-----CCHHHHHHHHHHHH
Confidence 346788999999999999999999999861 34443211 1111 0000 000 1111 11111
Q ss_pred -------HHHHHhcCC-cEEe----------ecccccC------------CcCCcCEEEEEeCChHHHHHHHHhcCCCCc
Q psy6661 70 -------LEPRVQGGG-KIID----------YHSAEMF------------PERWIDQVYVLSADNTTLYDRLVEKGQSGK 119 (172)
Q Consensus 70 -------~~~~~~~~~-~ii~----------~~~~~~~------------~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~ 119 (172)
+.+.+..|. +++| +....+- ....++.+|||++|++++.+|+.+|+....
T Consensus 95 ~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~d 174 (229)
T 4eaq_A 95 REHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN 174 (229)
T ss_dssp HHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCcc
Confidence 122334454 4555 2111110 012478999999999999999999864222
Q ss_pred hhhh-h-hchHHHHHHHHHHHhhccCC-cEEeCCCCChhhHHHHHHHHHH
Q psy6661 120 KLQD-N-LQCEIFQTILEEARDSYKED-IVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 120 ~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
.+.. . ...+.+...|.+....+... .+|| ++.+++++.++|.+++.
T Consensus 175 r~e~~~~~~~~rv~~~y~~l~~~~~~~~~vID-a~~s~eev~~~I~~~l~ 223 (229)
T 4eaq_A 175 RLDQEDLKFHEKVIEGYQEIIHNESQRFKSVN-ADQPLENVVEDTYQTII 223 (229)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEE-TTSCHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCCEEEEe-CCCCHHHHHHHHHHHHH
Confidence 2211 1 11122333344443333322 3454 46789999555555443
No 66
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.59 E-value=5.7e-14 Score=100.16 Aligned_cols=106 Identities=16% Similarity=0.280 Sum_probs=68.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhc-cccccccccc-----CCCCcchhHHHHHHHHHHhc----CC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIAREN-QFYLKYDEQY-----ECPELDEDKLLDELEPRVQG----GG 78 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~ 78 (172)
+|+|+|+|||||||+++.|++++| +++++.|+++++. ..-...+... .........+...+.+.+.. .+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g-~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG-IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC-CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 589999999999999999999999 9999999998763 0000011110 00111123344444444432 36
Q ss_pred cEEeeccccc-----CC--cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 79 KIIDYHSAEM-----FP--ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 79 ~ii~~~~~~~-----~~--~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+|+++..... +. ...++.+|||+++++++.+|+..|.
T Consensus 81 ~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp EEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 7787632111 11 1246899999999999999998774
No 67
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.58 E-value=2.9e-14 Score=100.63 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc-CCceEEehhhHHhhc-------ccccccccccCCCCcchh--HH--------
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC-DSLEWIDVNKIAREN-------QFYLKYDEQYECPELDED--KL-------- 66 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~~i~~d~~~~~~-------~~~~~~~~~~~~~~~~~~--~~-------- 66 (172)
+++++|+|+|+|||||||+++.|++++ | +++++.+...+.. .++.. +. .++.. .+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g-~~~~~~~~~~~~~~~g~~i~~~~~~-~~-----~~~~~~~~~l~~~~r~~ 74 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPA-NTIKYLNFPQRSTVTGKMIDDYLTR-KK-----TYNDHIVNLLFCANRWE 74 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCG-GGEEEEESSCTTSHHHHHHHHHHTS-SC-----CCCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCC-CceEEEecCCCCCcHHHHHHHHHhc-CC-----CCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999998 6 8887654332110 11211 01 11111 11
Q ss_pred -HHHHHHHHhcCC-cEEeecc-------------ccc-----CCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhc
Q psy6661 67 -LDELEPRVQGGG-KIIDYHS-------------AEM-----FPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQ 126 (172)
Q Consensus 67 -~~~~~~~~~~~~-~ii~~~~-------------~~~-----~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~ 126 (172)
++.+.+.+..+. +++|... ... .....++.+|||++|++++.+ .|+..+ ......
T Consensus 75 ~~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~--~e~~~~ 149 (204)
T 2v54_A 75 FASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEI--YEDVTF 149 (204)
T ss_dssp THHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSST--TCCSHH
T ss_pred HHHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCccc--ccHHHH
Confidence 122233444454 4444210 000 011247899999999999887 443111 111111
Q ss_pred hHHHHHHHHHHHhhccCC-cEEeCCCCChhhHHHHHHHHHH
Q psy6661 127 CEIFQTILEEARDSYKED-IVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
.+.+...|.+....+... .+|++ +.+++++.+++.+++.
T Consensus 150 ~~rl~~~y~~~~~~~~~~~~~Id~-~~~~~~v~~~i~~~l~ 189 (204)
T 2v54_A 150 QQKVLQEYKKMIEEGDIHWQIISS-EFEEDVKKELIKNIVI 189 (204)
T ss_dssp HHHHHHHHHHHHTTCSSCEEEECT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHHHHH
Confidence 222444455544444333 44544 6788999666655554
No 68
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.56 E-value=3.3e-15 Score=106.15 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
|+++.+|+|+|+|||||||+++.|+++++ .++++.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~~~~ 41 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK-NNNVEV 41 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcE
Confidence 44678999999999999999999999987 665554
No 69
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.55 E-value=2.4e-15 Score=104.40 Aligned_cols=153 Identities=11% Similarity=0.071 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc---CCceEEehhhHHhhcccccccccccCCCCcchhHHHHHH---HHHH-hcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC---DSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDEL---EPRV-QGG 77 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~ 77 (172)
++..+|+|+|++||||||+++.|++.+ | ++++..|.......+....+ ....+....++.+ ...+ ..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g-~~~i~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHG-IPCYTLDGDNIRQGLNKNLG----FSPEDREENVRRIAEVAKLFADAG 77 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHTTTTTTTCC----SSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCC-CcEEEECChHHHHHHhhccc----cccccHHHHHHHHHHHHHHHHHCC
Confidence 346789999999999999999999987 8 88886544332221111100 0000111122222 1223 233
Q ss_pred CcEEeecc-ccc-----CC-----cCCcCEEEEEeCChHHHHHHHHhcCCC--CchhhhhhchHHHHHHHHHHHhhccCC
Q psy6661 78 GKIIDYHS-AEM-----FP-----ERWIDQVYVLSADNTTLYDRLVEKGQS--GKKLQDNLQCEIFQTILEEARDSYKED 144 (172)
Q Consensus 78 ~~ii~~~~-~~~-----~~-----~~~~~~~i~l~~~~~~~~~Rl~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (172)
.+++.+.. +.. +. ...++.+|||+||++++.+|+..|.+. +....... .. +...+.. . -.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~-~~ad 152 (179)
T 2pez_A 78 LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF-TG-IDSEYEK--P-EAPE 152 (179)
T ss_dssp CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC-BT-TTBCCCC--C-SSCS
T ss_pred CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc-cc-CCccccC--C-CCCc
Confidence 33333322 110 00 123457899999999999998653100 00000000 00 0000110 0 1145
Q ss_pred cEEeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 145 IVVSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 145 ~~i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
+++++++.+++++ .++|.+.+.+
T Consensus 153 ~vid~~~~~~~~~---~~~i~~~l~~ 175 (179)
T 2pez_A 153 LVLKTDSCDVNDC---VQQVVELLQE 175 (179)
T ss_dssp EEEETTTSCHHHH---HHHHHHHHHH
T ss_pred EEEECCCCCHHHH---HHHHHHHHHH
Confidence 8888888899999 4445555543
No 70
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.54 E-value=5.1e-15 Score=102.47 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=64.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH-HcCCceEEehhhHHhhcccccccc--cccCCCC--cchhHHHHHHHHHH---hcC-C
Q psy6661 8 PNILITGTPGTGKSTLCEEVVK-QCDSLEWIDVNKIARENQFYLKYD--EQYECPE--LDEDKLLDELEPRV---QGG-G 78 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~-~l~~~~~i~~d~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~---~~~-~ 78 (172)
.+|+|+|+|||||||+++.|++ .++ +.+++.|.+....... ..+ ..+.... .-...+...+...+ ..+ +
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~-~~~i~~d~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAH-EERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT-EEEECHHHHHHHHTTS-CCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC-cEEecHHHHHHHhhCC-CccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence 5799999999999999999998 688 9999998775432100 001 0010000 00012233444555 444 4
Q ss_pred cEEeecccc-----cCC----cC-CcCEEEEEeCChHHHHHHHHhcC
Q psy6661 79 KIIDYHSAE-----MFP----ER-WIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 79 ~ii~~~~~~-----~~~----~~-~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
+|+|+.... .+. .. ....+|||+||++++.+|+..|+
T Consensus 81 vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp EEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 677654321 111 11 12357999999999999999886
No 71
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.53 E-value=6.1e-14 Score=99.55 Aligned_cols=155 Identities=15% Similarity=0.206 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCC-ceEEeh--------hhHHhhcccccccccccCC----CCc--c-hhHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDS-LEWIDV--------NKIARENQFYLKYDEQYEC----PEL--D-EDKLLDEL 70 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~-~~~i~~--------d~~~~~~~~~~~~~~~~~~----~~~--~-~~~~~~~~ 70 (172)
.+.|.|.|+.||||||+++.|++.|.+ ++++.+ .+.++.. ... +..... ..+ + .+.+...+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~--l~~-~~~~~~~~~~lLf~a~R~~~~~~~i 78 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKI--VLE-GNDMDIRTEAMLFAASRREHLVLKV 78 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHH--HHS-SCCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHH--Hhc-ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999998831 554432 1112211 110 010000 000 0 01122334
Q ss_pred HHHHhcCCcEEeeccc-----------cc------------CCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhh-hh-
Q psy6661 71 EPRVQGGGKIIDYHSA-----------EM------------FPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQD-NL- 125 (172)
Q Consensus 71 ~~~~~~~~~ii~~~~~-----------~~------------~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~-~~- 125 (172)
.+.+..|.+|+...+. .+ ...-.||++|||++|++++.+|+.+|+.....+.. ..
T Consensus 79 ~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~ 158 (205)
T 4hlc_A 79 IPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLK 158 (205)
T ss_dssp HHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHH
T ss_pred HHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHH
Confidence 4455667655522110 00 00134799999999999999999988743222211 11
Q ss_pred chHHHHHHHHHHHhhccCC-cEEeCCCCChhhHHHHHHHHH
Q psy6661 126 QCEIFQTILEEARDSYKED-IVVSLPSNTHDDMSSNVTSII 165 (172)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~e~~~~i~~i~ 165 (172)
..+.+...|.+....+... .+|| .+.+++++.++|..++
T Consensus 159 f~~~v~~~Y~~l~~~~~~~~~~ID-a~~~~e~V~~~i~~~i 198 (205)
T 4hlc_A 159 FHEKVIEGYQEIIHNESQRFKSVN-ADQPLENVVEDTYQTI 198 (205)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEE-TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHHH
Confidence 1122333444444333332 3444 4678888855554433
No 72
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.51 E-value=1.3e-13 Score=97.31 Aligned_cols=145 Identities=13% Similarity=0.086 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc---CCce--EEehhhHHhhcccccccccccCCCCcch--hHHHHH---HH-HH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC---DSLE--WIDVNKIARENQFYLKYDEQYECPELDE--DKLLDE---LE-PR 73 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~--~i~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~-~~ 73 (172)
.++.+|+|+|+|||||||+++.|++.+ | .. +++.+++..... . .. .+.+. ...... +. ..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G-~~~~~~d~d~~~~~~~--~----~~--~~~~~~~~~~~~~~~~~~~~~ 93 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKG-KLCYILDGDNVRHGLN--R----DL--SFKAEDRAENIRRVGEVAKLF 93 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHTTTTT--T----TC--CSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC-ceEEEecCchhhhHhh--c----cc--CcChHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999998 5 55 888877754211 0 00 01001 111111 12 22
Q ss_pred HhcCCcEEe-ecccc-----cCCc---CCcCEEEEEeCChHHHHHHH------HhcCCCCchhhhhhchHHHHHHHHHHH
Q psy6661 74 VQGGGKIID-YHSAE-----MFPE---RWIDQVYVLSADNTTLYDRL------VEKGQSGKKLQDNLQCEIFQTILEEAR 138 (172)
Q Consensus 74 ~~~~~~ii~-~~~~~-----~~~~---~~~~~~i~l~~~~~~~~~Rl------~~r~~~~~~~~~~~~~~~~~~~~~~~~ 138 (172)
...+..++. ..... .+.. ...-..|||+||++++.+|+ ..|......... .. ..|..
T Consensus 94 ~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~-~~-----~~~~~-- 165 (200)
T 3uie_A 94 ADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTG-ID-----DPYEP-- 165 (200)
T ss_dssp HHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBT-TT-----BCCCC--
T ss_pred HhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCC-CC-----CcCcC--
Confidence 233433332 21110 1111 11124599999999999997 433321111111 00 00100
Q ss_pred hhccCCcEEeCCC-CChhhHHHHHHHHHHHHHh
Q psy6661 139 DSYKEDIVVSLPS-NTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 139 ~~~~~~~~i~~~~-~~~~e~~~~i~~i~~~~~~ 170 (172)
.-.++.+||+++ .+++++ ++.|++++.+
T Consensus 166 -~~~~~~~idt~~~~~~~e~---v~~i~~~l~~ 194 (200)
T 3uie_A 166 -PLNCEISLGREGGTSPIEM---AEKVVGYLDN 194 (200)
T ss_dssp -CSSCSEEECCSSCCCHHHH---HHHHHHHHHH
T ss_pred -CCCCCEEEecCCCCCHHHH---HHHHHHHHHH
Confidence 002468899988 799999 7777766643
No 73
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.49 E-value=5.5e-14 Score=113.93 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc---CCceEEehhhHHhhcccccccccccCCCCcchhHHHHHH----HHHHhcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC---DSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDEL----EPRVQGG 77 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 77 (172)
+++.+|+|+|+|||||||+++.|++++ | ++++.+|....+..+... ..+.. .+....++.+ ......|
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G-~~~v~lDgD~iR~~L~~~--~~fs~--~dree~~r~i~eva~~~l~~G 124 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHG-IPCYTLDGDNIRQGLNKN--LGFSP--EDREENVRRIAEVAKLFADAG 124 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEESHHHHTTTTTTT--CCSSH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEechHHhhhccCcc--ccCCh--hhhHHHHHHHHHHHHHHHhCC
Confidence 356789999999999999999999998 8 888877544333222110 00000 0011112222 2223345
Q ss_pred CcEEee-cccc---------cCCc-CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc----
Q psy6661 78 GKIIDY-HSAE---------MFPE-RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK---- 142 (172)
Q Consensus 78 ~~ii~~-~~~~---------~~~~-~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 142 (172)
.+|+.+ ..+. ++.. ..+..+|||+||++++.+|+.++.+.. .... . .. .+......|.
T Consensus 125 ~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~--aR~~-~---~~-~~~~~~~~Ye~p~~ 197 (630)
T 1x6v_B 125 LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKK--ARAG-E---IK-GFTGIDSEYEKPEA 197 (630)
T ss_dssp CEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHH--HTTC---------CBTTTBCCCCCSS
T ss_pred CEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchh--hhhh-h---HH-HHHHhhhhhcccCC
Confidence 444433 1111 0111 123568999999999999986321100 0000 0 00 0111122332
Q ss_pred CCcEEeCCCCChhhHHHHHHHHHHHHHhc
Q psy6661 143 EDIVVSLPSNTHDDMSSNVTSIIQFVKQW 171 (172)
Q Consensus 143 ~~~~i~~~~~~~~e~~~~i~~i~~~~~~~ 171 (172)
++.+||+++.+++++ +++|++++.++
T Consensus 198 ~dlvIDts~~s~eev---v~~Il~~L~~~ 223 (630)
T 1x6v_B 198 PELVLKTDSCDVNDC---VQQVVELLQER 223 (630)
T ss_dssp CSEEEETTSSCHHHH---HHHHHHHHHHT
T ss_pred CcEEEECCCCCHHHH---HHHHHHHHHhc
Confidence 458899888899999 67777776554
No 74
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.49 E-value=1e-13 Score=96.77 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcchhHHHHH---H-HHHHhc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDE---L-EPRVQG 76 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 76 (172)
+++.+|+|+|+|||||||+++.|++.++. +.+++.|.+... +... ..+ . ..+....... + ......
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~--~~~~--~~~-~-~~~r~~~~~~~~~~~~~~~~~ 84 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT--VSEG--AGF-T-REERLRHLKRIAWIARLLARN 84 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTT--TTTT--CCC-C-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHH--Hhhc--cCC-C-hhhHHHHHHHHHHHHHHHHhC
Confidence 35678999999999999999999988741 245676665322 1110 000 0 0001111111 1 112234
Q ss_pred CCcEE-eecccc---------cCC-cCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc---
Q psy6661 77 GGKII-DYHSAE---------MFP-ERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK--- 142 (172)
Q Consensus 77 ~~~ii-~~~~~~---------~~~-~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (172)
+.+|+ +..... +.. ...++.+|||+||++++.+|+..+.. ..... ...+.+ + .....|.
T Consensus 85 g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~--~~~~~-~~~~~~---~-~~~~~y~~~~ 157 (186)
T 2yvu_A 85 GVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLY--KKALK-GELENF---T-GITDPYEPPE 157 (186)
T ss_dssp TCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHH--HHHHT-TCCSSC---H-HHHSCCCCCS
T ss_pred CCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhh--hHHhh-cchhhh---h-hhhhcccCCC
Confidence 54444 432211 011 01246789999999999999754210 00000 000001 1 1112243
Q ss_pred -CCcEEeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 143 -EDIVVSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 143 -~~~~i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
.+.+||+++.+++++ +++|++.+.+
T Consensus 158 ~~~~~Id~~~~~~~ev---~~~I~~~l~~ 183 (186)
T 2yvu_A 158 NPQLVLDTESNTIEHN---VSYLYSLVKA 183 (186)
T ss_dssp SCSEEEETTTSCHHHH---HHHHHHHHHH
T ss_pred CCcEEEECCCCCHHHH---HHHHHHHHHH
Confidence 457888887899999 6666666654
No 75
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.48 E-value=4.8e-14 Score=101.45 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCC------ceEEehh--------hHHhhccccccc--ccccCCCCc--ch-h
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDS------LEWIDVN--------KIARENQFYLKY--DEQYECPEL--DE-D 64 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~------~~~i~~d--------~~~~~~~~~~~~--~~~~~~~~~--~~-~ 64 (172)
|++..+|+|.|++||||||+++.|++.++. +.++.+. +.++. +.... ........+ +. +
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~--~l~~~~~~~~~~~llf~a~R~~ 99 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLRE--ILLNQPMDLETEALLMFAGRRE 99 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHH--HHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHH--HHHcCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999998840 4443211 11111 01000 000000000 00 1
Q ss_pred HHHHHHHHHHhcCCcEE-ee--------ccc--cc----C--------CcCCcCEEEEEeCChHHHHHHHHhcCCCCchh
Q psy6661 65 KLLDELEPRVQGGGKII-DY--------HSA--EM----F--------PERWIDQVYVLSADNTTLYDRLVEKGQSGKKL 121 (172)
Q Consensus 65 ~~~~~~~~~~~~~~~ii-~~--------~~~--~~----~--------~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~ 121 (172)
.+.+.+.+.+..|.+|| |. ... .+ + .--.||++|||++|++++.+|+.+|+.. ..+
T Consensus 100 ~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~-dr~ 178 (227)
T 3v9p_A 100 HLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP-DKF 178 (227)
T ss_dssp HHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC----
T ss_pred HHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCc-cch
Confidence 12223444555665544 31 000 00 0 0134799999999999999999988521 111
Q ss_pred hh--hhchHHHHHHHHHHHhhccC-CcEEeCCCCChhhHHHHHHHHHH
Q psy6661 122 QD--NLQCEIFQTILEEARDSYKE-DIVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 122 ~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
.. ....+.+...|......+.. ..+||. +.+++++.+.|.++++
T Consensus 179 E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa-~~s~eeV~~~I~~~l~ 225 (227)
T 3v9p_A 179 ESESDAFFARTRAEYLRRAQEAPHRFVIVDS-SEPIAQIRKQLEGVLA 225 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCEEEEeC-CCCHHHHHHHHHHHHH
Confidence 11 01112344445444444433 245554 6799999555555443
No 76
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.45 E-value=6.9e-13 Score=94.62 Aligned_cols=158 Identities=14% Similarity=0.155 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC--ceEEehh--------hHHhhcccccccc-cccCC----CCc--c-hhHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS--LEWIDVN--------KIARENQFYLKYD-EQYEC----PEL--D-EDKL 66 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~--~~~i~~d--------~~~~~~~~~~~~~-~~~~~----~~~--~-~~~~ 66 (172)
|+..+|+|.|++||||||+++.|++.++. +.++.+. ..++. +..... ..... ..+ + .+.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~--~l~~~~~~~~~~~~~~llf~a~R~~~~ 81 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRE--LLLAPSDEPMAADTELLLMFAARAQHL 81 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHH--HHHSCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHH--HHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998742 4444321 11111 111000 00000 000 0 0112
Q ss_pred HHHHHHHHhcCCcEEeecc---------c--cc----C--------CcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhh
Q psy6661 67 LDELEPRVQGGGKIIDYHS---------A--EM----F--------PERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQD 123 (172)
Q Consensus 67 ~~~~~~~~~~~~~ii~~~~---------~--~~----~--------~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~ 123 (172)
.+.+.+.+..|.+|+...+ . .+ + .-..||++|||++|++++.+|+..|+.. ..+..
T Consensus 82 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~-dr~E~ 160 (213)
T 4edh_A 82 AGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL-DRFEQ 160 (213)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC-CTTTT
T ss_pred HHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc-Ccccc
Confidence 2333444556655442210 0 00 0 0134799999999999999999988521 11111
Q ss_pred --hhchHHHHHHHHHHHhhccC-CcEEeCCCCChhhHHHHHHHHHH
Q psy6661 124 --NLQCEIFQTILEEARDSYKE-DIVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
....+.+...|.+....+.. ..+||. +.+++++.++|.+++.
T Consensus 161 ~~~~~~~rv~~~y~~l~~~~~~~~~vIDa-~~s~eeV~~~I~~~l~ 205 (213)
T 4edh_A 161 EDRRFFEAVRQTYLQRAAQAPERYQVLDA-GLPLAEVQAGLDRLLP 205 (213)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCcEEEEeC-CCCHHHHHHHHHHHHH
Confidence 01112244445544444433 245554 5699999666655554
No 77
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.44 E-value=3.5e-13 Score=97.45 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=77.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCC--ce-EEehh--------hHHhhccccc-ccccccCCC-----Cc--c-h
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDS--LE-WIDVN--------KIARENQFYL-KYDEQYECP-----EL--D-E 63 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~--~~-~i~~d--------~~~~~~~~~~-~~~~~~~~~-----~~--~-~ 63 (172)
+|+..+|+|.|++||||||+++.|++.++. +. .+.+. +.++. +.. ......... .+ + .
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~--~l~~~~~~~~~~~~~e~lLf~A~R~ 101 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRA--LVKEEHPGEELQDITELLLVYAARV 101 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHH--HHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHH--HHhhCCCcccCCHHHHHHHHHHHHH
Confidence 356789999999999999999999988741 33 22111 11111 110 000000000 00 0 0
Q ss_pred hHHHHHHHHHHhcCCcEEeecc---------c--cc----C--------CcCCcCEEEEEeCChHHHHHHHHhcCCCCch
Q psy6661 64 DKLLDELEPRVQGGGKIIDYHS---------A--EM----F--------PERWIDQVYVLSADNTTLYDRLVEKGQSGKK 120 (172)
Q Consensus 64 ~~~~~~~~~~~~~~~~ii~~~~---------~--~~----~--------~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~ 120 (172)
+.+.+.+.+.+..|.+|+...+ . .+ + .--.||.+|||++|++++.+|+.+|+.. ..
T Consensus 102 ~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~-dr 180 (236)
T 3lv8_A 102 QLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL-DR 180 (236)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC-CT
T ss_pred HHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc-ch
Confidence 1122234445556655442211 0 00 0 0135799999999999999999988621 11
Q ss_pred hhh--hhchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 121 LQD--NLQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 121 ~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
+.. ....+.+...|.+....+....+|| .+.+++++.++|..+++.
T Consensus 181 ~E~~~~~~~~rv~~~y~~la~~~~~~~vID-a~~sieeV~~~I~~~l~~ 228 (236)
T 3lv8_A 181 IEKMDISFFERARERYLELANSDDSVVMID-AAQSIEQVTADIRRALQD 228 (236)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHCTTEEEEE-TTSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHCCCEEEEe-CCCCHHHHHHHHHHHHHH
Confidence 111 0112224444444444333334455 467999996666665543
No 78
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.42 E-value=9.1e-13 Score=92.04 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=82.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCce--EEehhhHHhhcccccccccccCCCCcc----hhHHHHHHH---HHH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLE--WIDVNKIARENQFYLKYDEQYECPELD----EDKLLDELE---PRV 74 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~--~i~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~ 74 (172)
..+..+|+|.|+|||||||+++.|+..++ .. +++.|++...... + .......+ ...+.+.+. ...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~-~g~i~i~~d~~~~~~~~----~-~~~~~~~~~~~~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPG-VPKVHFHSDDLWGYIKH----G-RIDPWLPQSHQQNRMIMQIAADVAGRY 79 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSS-SCEEEECTTHHHHTCCS----S-CCCTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccC-CCeEEEcccchhhhhhc----c-cccCCccchhhhhHHHHHHHHHHHHHH
Confidence 45677899999999999999999998765 55 6677776443210 0 00001111 011112221 111
Q ss_pred -hcCC-cEEeeccccc-C---Cc-CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-CCcE
Q psy6661 75 -QGGG-KIIDYHSAEM-F---PE-RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK-EDIV 146 (172)
Q Consensus 75 -~~~~-~ii~~~~~~~-~---~~-~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 146 (172)
..+. ++++...... + .. ...-..+++.++.+++.+|+..|. ++... +.+....++......+. ...+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~---~~~ll--d~~~~~~~~~~~~~l~~~~~~~ 154 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRG---GDSLS--DPLVVADLHSQFADLGAFEHHV 154 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTC---TTSCC--CHHHHHHHHHHTTCCGGGGGGE
T ss_pred hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC---CCccC--CHHHHHHHHHHHhccCcccccE
Confidence 2233 4455422111 1 00 112246899999999999999986 22221 12223333333222222 3578
Q ss_pred EeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 147 VSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 147 i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
+++++.+++++ +++|++.+..
T Consensus 155 i~t~~~~~~~~---~~~i~~~l~~ 175 (191)
T 1zp6_A 155 LPVSGKDTDQA---LQSAINALQS 175 (191)
T ss_dssp EECTTCCTTTT---TTTTHHHHHH
T ss_pred EECCCCCHHHH---HHHHHHHHHh
Confidence 88887888888 5555555543
No 79
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.41 E-value=1.7e-12 Score=92.55 Aligned_cols=158 Identities=14% Similarity=0.168 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC--c-eEEeh--------hhHHhhcccccccc----cccCCC----Cc--c-h
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS--L-EWIDV--------NKIARENQFYLKYD----EQYECP----EL--D-E 63 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~--~-~~i~~--------d~~~~~~~~~~~~~----~~~~~~----~~--~-~ 63 (172)
+.++|.|.|++||||||+++.|++.+.. + .++-+ +..++. +..... ...... .+ + .
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~--~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRS--LLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHH--HHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHH--HHhcccccccccCChHHHHHHHHHHHH
Confidence 4689999999999999999999988731 3 22211 111111 111000 000000 00 0 0
Q ss_pred hHHHHHHHHHHhcCCcEEeecc---------c--c----cC--------CcCCcCEEEEEeCChHHHHHHHHhcCCCCch
Q psy6661 64 DKLLDELEPRVQGGGKIIDYHS---------A--E----MF--------PERWIDQVYVLSADNTTLYDRLVEKGQSGKK 120 (172)
Q Consensus 64 ~~~~~~~~~~~~~~~~ii~~~~---------~--~----~~--------~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~ 120 (172)
+.+...+.+.+..|.+|+...+ . . ++ .-..||++|||++|++++.+|+.+|+.. ..
T Consensus 80 ~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~-dr 158 (213)
T 4tmk_A 80 QLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL-DR 158 (213)
T ss_dssp HHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC-CT
T ss_pred HHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-cc
Confidence 1122334455566765553211 0 0 00 0135799999999999999999998631 11
Q ss_pred hhh-h-hchHHHHHHHHHHHhhccCCcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 121 LQD-N-LQCEIFQTILEEARDSYKEDIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 121 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
+.. . ...+.+...|.+....+....+|| .+.+++++.++|.++++.
T Consensus 159 ~E~~~~~f~~rv~~~y~~la~~~~~~~vID-a~~s~eeV~~~I~~~l~~ 206 (213)
T 4tmk_A 159 IEQESFDFFNRTRARYLELAAQDKSIHTID-ATQPLEAVMDAIRTTVTH 206 (213)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTCTTEEEEE-TTSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHCCcEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 111 1 111223333444333332234555 467999996666655543
No 80
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.41 E-value=3.5e-13 Score=96.60 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCc----eEEe-h----h----hHHhhcccccccccccCC----CCc--ch-h
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSL----EWID-V----N----KIARENQFYLKYDEQYEC----PEL--DE-D 64 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~----~~i~-~----d----~~~~~~~~~~~~~~~~~~----~~~--~~-~ 64 (172)
+++.+|+|.|++||||||+++.|++.++ . .++. + + +.+++ ++.. ...+.. ..+ +. +
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~-~~~g~~v~~~treP~~t~~g~~ir~--~l~~-~~~~~~~~e~llf~a~R~~ 94 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS-EIYGVNNVVLTREPGGTLLNESVRN--LLFK-AQGLDSLSELLFFIAMRRE 94 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCGGGEEEEESSCSSHHHHHHHH--HHHT-CSSCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh-hccCceeeEeeeCCCCChHHHHHHH--HHhC-CCCCCHHHHHHHHHHHHHH
Confidence 4577899999999999999999999876 4 3222 1 1 11111 1111 001000 000 00 1
Q ss_pred HHHHHHHHHHhcCCcEEeeccc-----------c------------cCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchh
Q psy6661 65 KLLDELEPRVQGGGKIIDYHSA-----------E------------MFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKL 121 (172)
Q Consensus 65 ~~~~~~~~~~~~~~~ii~~~~~-----------~------------~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~ 121 (172)
.+.+.+.+.+..|.+||...+. . ... -.||++|||++|+++..+|+ .|++-+.
T Consensus 95 ~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr~E~-- 170 (223)
T 3ld9_A 95 HFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNGYEF-- 170 (223)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC------------------
T ss_pred HHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCcccc--
Confidence 1112234455566555521110 0 011 35899999999999999999 4432111
Q ss_pred hhhhchHHHHHHHHHHHhhccC-CcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 122 QDNLQCEIFQTILEEARDSYKE-DIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
......+.+...|.+....+.. ..+||. +.+++++ ++|.+++..
T Consensus 171 ~~~e~~~rv~~~y~~la~~~~~~~~vIDa-~~sieeV-~~I~~~l~~ 215 (223)
T 3ld9_A 171 ADMEFYYRVRDGFYDIAKKNPHRCHVITD-KSETYDI-DDINFVHLE 215 (223)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTTEEEEES-SCSSSCC-CHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCEEEEcC-CCCHHHH-HHHHHHHHH
Confidence 0111123355556655555543 345554 5688888 777666643
No 81
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.4e-12 Score=92.69 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.++.+|+|+||+||||||+++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578899999999999999999999875
No 82
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.36 E-value=1.3e-11 Score=86.95 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=25.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
|+++.+|+|+||+||||||+++.|+..++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45678999999999999999999998765
No 83
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.36 E-value=4.9e-12 Score=89.18 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=77.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc---CCceEEehh--------hHHhhcccccccccccCCCCc--chhHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC---DSLEWIDVN--------KIARENQFYLKYDEQYECPEL--DEDKLLDELEPRV 74 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l---~~~~~i~~d--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 74 (172)
..|.|.|+.||||||+++.|++.| | .+++.+. +.++..-......+......+ +.......+.+.+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g-~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRG-KKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999887 4 5554321 111111000000000000000 1122344455556
Q ss_pred hcCCcEEeeccc-----------c----c--------CCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHH
Q psy6661 75 QGGGKIIDYHSA-----------E----M--------FPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQ 131 (172)
Q Consensus 75 ~~~~~ii~~~~~-----------~----~--------~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~ 131 (172)
..|.+|+...+. . + ...-.||.+|||++|+++..+|...+.+-+ .....+.+.
T Consensus 80 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e----~~ef~~rv~ 155 (197)
T 3hjn_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFE----KREFLERVR 155 (197)
T ss_dssp TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTC----CHHHHHHHH
T ss_pred HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccc----cHHHHHHHH
Confidence 667665532110 0 0 001347999999999999999976654211 111222344
Q ss_pred HHHHHHHhhccCC-cEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 132 TILEEARDSYKED-IVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 132 ~~~~~~~~~~~~~-~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
..|.+....+... .+|| .+.+++++ .++|++.++
T Consensus 156 ~~y~~la~~~~~~~~~ID-a~~~~eeV---~~~I~~~i~ 190 (197)
T 3hjn_A 156 EGYLVLAREHPERIVVLD-GKRSIEEI---HRDVVREVK 190 (197)
T ss_dssp HHHHHHHHHCTTTEEEEE-TTSCHHHH---HHHHHHHHS
T ss_pred HHHHHHHHhCCCCEEEEc-CCCCHHHH---HHHHHHHHH
Confidence 4455444444333 3444 46789999 555555554
No 84
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.35 E-value=8.5e-12 Score=87.03 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+.|+|+|||||||||+++.|.+++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999998865
No 85
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.35 E-value=3e-11 Score=87.76 Aligned_cols=108 Identities=22% Similarity=0.311 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcc-cccccccc----cC-CCCcchhHHHHHHHHHHh---c
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQ-FYLKYDEQ----YE-CPELDEDKLLDELEPRVQ---G 76 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~-~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~---~ 76 (172)
++.+|+|.|++||||||+++.|++++| +..++.+++..... .....+.. .+ ...+......+.+...+. .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg-~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG-LQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC-CCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC-CeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 467999999999999999999999999 99999888766421 00000000 00 111112223333333222 2
Q ss_pred CCcEEeecccc-----cC-CcCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 77 GGKIIDYHSAE-----MF-PERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 77 ~~~ii~~~~~~-----~~-~~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
.++++++.... .+ .-..++.++||+++++++.+|+..|
T Consensus 105 ~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r 148 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR 148 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred CeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC
Confidence 34556542111 11 1134678999999999999999876
No 86
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.35 E-value=2.8e-12 Score=91.55 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=84.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE--eh---hhH----HhhcccccccccccCC----CCc--chhHHHH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWI--DV---NKI----ARENQFYLKYDEQYEC----PEL--DEDKLLD 68 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i--~~---d~~----~~~~~~~~~~~~~~~~----~~~--~~~~~~~ 68 (172)
|.+..+|+|.|++||||||+++.|+++++ .... .. ++. ++. +.......... ..+ +.....+
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~-~~~~~~~ep~~~t~~g~~ir~--~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQ-PNCKLLKFPERSTRIGGLINE--YLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHC-SSEEEEESSCTTSHHHHHHHH--HHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc-ccceEEEecCCCChHHHHHHH--HHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999998 5322 10 111 111 11100000000 000 0111233
Q ss_pred HHHHHHhcCCcEE-ee--------cccc--------c---C--CcCCcCEEEEE-eCChHHHHHHHHhcCCCCchhhhhh
Q psy6661 69 ELEPRVQGGGKII-DY--------HSAE--------M---F--PERWIDQVYVL-SADNTTLYDRLVEKGQSGKKLQDNL 125 (172)
Q Consensus 69 ~~~~~~~~~~~ii-~~--------~~~~--------~---~--~~~~~~~~i~l-~~~~~~~~~Rl~~r~~~~~~~~~~~ 125 (172)
.+.+.+..|.+|| |- .... . + .-..||++||| ++|++++.+|+..+....+ ...
T Consensus 79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E---~~~ 155 (216)
T 3tmk_A 79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYE---TVK 155 (216)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTC---CHH
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCccccc---HHH
Confidence 4445556666554 31 0000 0 0 01347999999 9999999999765431111 112
Q ss_pred chHHHHHHHHHHHhh----cc-CCcEEeCCCCChhhHHHHHHHHHHH
Q psy6661 126 QCEIFQTILEEARDS----YK-EDIVVSLPSNTHDDMSSNVTSIIQF 167 (172)
Q Consensus 126 ~~~~~~~~~~~~~~~----~~-~~~~i~~~~~~~~e~~~~i~~i~~~ 167 (172)
..+.+...|.+.... .. .-.+||+.+.+++++.+.|.+++..
T Consensus 156 f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~ 202 (216)
T 3tmk_A 156 FQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEP 202 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 223344555555443 22 2355664678999997666665543
No 87
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.35 E-value=7.4e-13 Score=94.21 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=56.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC---C--ceEEehhhHHhhcccccccccccCCCCcch--hHH----HHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD---S--LEWIDVNKIARENQFYLKYDEQYECPELDE--DKL----LDELEPR 73 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~ 73 (172)
.++.+|+|+|+|||||||+++.|++.++ . +.+++.|.+.... .. .. .+.+. ... ...+...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l--~~--~~----~~~~~~r~~~~~~~~~~~~~~ 94 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL--NK--DL----GFSEADRNENIRRIAEVAKLF 94 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT--TT--TC----CSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh--cc--cc----CCCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999998764 1 3455555543221 10 00 11101 112 2222334
Q ss_pred HhcCC-cEEeeccc-----ccCCc-----------CCcCEEEEEeCChHHHHHHH
Q psy6661 74 VQGGG-KIIDYHSA-----EMFPE-----------RWIDQVYVLSADNTTLYDRL 111 (172)
Q Consensus 74 ~~~~~-~ii~~~~~-----~~~~~-----------~~~~~~i~l~~~~~~~~~Rl 111 (172)
+..|. +|+++... ..+.. ..++.+|||+||++++.+|+
T Consensus 95 l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 95 ADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 45554 45553211 00110 13468899999999999995
No 88
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.34 E-value=2.2e-12 Score=94.33 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=32.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIA 43 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~ 43 (172)
++|+|+|+|||||||+|+.|+++++ +++++.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~-~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG-WPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-CCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC-CeEEeccHHh
Confidence 5899999999999999999999999 9999999875
No 89
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.33 E-value=4.5e-12 Score=94.43 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIAR 44 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~ 44 (172)
+..+|.|+|++||||||+++.|++.+++ +.+++.|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 4578999999999999999999997762 68899999875
No 90
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.32 E-value=7.3e-13 Score=98.95 Aligned_cols=104 Identities=23% Similarity=0.290 Sum_probs=64.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc-CCceEEehhhHHhhcccccccccccCCCCc-ch-----hHHHHHHHHHH---hcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC-DSLEWIDVNKIARENQFYLKYDEQYECPEL-DE-----DKLLDELEPRV---QGG 77 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l-~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~---~~~ 77 (172)
.+|+|+|+|||||||+++.|++++ + +.+++.|.+.... +. ........+. +. ..+...+...+ ..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~-~~~i~~D~~r~~~--~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSI--MA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT-EEEECHHHHHHHH--TT-SCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCC-cEEecccHHHHHh--cc-CCcccccccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 579999999999999999999985 7 9999999664432 11 0000000111 11 11233344555 444
Q ss_pred -CcEEeecccc-----cCC----cC-CcCEEEEEeCChHHHHHHHHhcC
Q psy6661 78 -GKIIDYHSAE-----MFP----ER-WIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 78 -~~ii~~~~~~-----~~~----~~-~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
++|+|+.... .+. .. ....+|||++|++++.+|+..|.
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 4677764322 111 11 12368999999999999999986
No 91
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.32 E-value=8.2e-11 Score=87.51 Aligned_cols=107 Identities=15% Similarity=0.316 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc--CCceEEehhhHHhhccccc----cccccc---CCCCcchhH-HHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC--DSLEWIDVNKIARENQFYL----KYDEQY---ECPELDEDK-LLDELEPRV 74 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l--~~~~~i~~d~~~~~~~~~~----~~~~~~---~~~~~~~~~-~~~~~~~~~ 74 (172)
+++.+|+|+|+|||||||+++.|++++ + +.+++.|.+.....-+. .+++.. .... ... ....+...+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~-~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~v~~~l 107 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGN-VIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPY--SNRMTEAIISRLS 107 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTC-CEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC-eEEEechHhHHhchhhHHHHHHccchhhhhhhHH--HHHHHHHHHHHHH
Confidence 346789999999999999999999998 6 88899887754332111 111110 0000 011 122334444
Q ss_pred hcC-CcEEeeccccc---------CCcCCcC-EEEEEeCChHHH----HHHHHhc
Q psy6661 75 QGG-GKIIDYHSAEM---------FPERWID-QVYVLSADNTTL----YDRLVEK 114 (172)
Q Consensus 75 ~~~-~~ii~~~~~~~---------~~~~~~~-~~i~l~~~~~~~----~~Rl~~r 114 (172)
..| ++|++...... +....+. .++++.+|++++ .+|+..|
T Consensus 108 ~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 108 DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 444 67777643221 1111122 368899999999 8888655
No 92
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.31 E-value=5.7e-12 Score=98.35 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhcccccccccccCCCCcchhHHHHHHHHHHhcC-CcEEee
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDEQYECPELDEDKLLDELEPRVQGG-GKIIDY 83 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~ 83 (172)
..+.+|+|+|+|||||||+++.|+++++ +.+++.|.+- . ...+...+...+..+ .+|+|.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~----------------~--~~~~~~~~~~~l~~g~~vIiD~ 316 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG-YVHVNRDTLG----------------S--WQRCVSSCQAALRQGKRVVIDN 316 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGT-CEECCGGGSC----------------S--HHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcC-cEEEccchHH----------------H--HHHHHHHHHHHHhcCCcEEEeC
Confidence 4568899999999999999999999999 9999988761 0 123444555555555 567775
Q ss_pred ccccc---------CCcC-CcCEEEEEeCChHHHHHHHHhcC
Q psy6661 84 HSAEM---------FPER-WIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 84 ~~~~~---------~~~~-~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
..... .... ..-.+|||+++.+++.+|+..|.
T Consensus 317 ~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 317 TNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence 43211 1111 11247899999999999999885
No 93
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.31 E-value=9.6e-13 Score=106.28 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC-----ceEEehhhHHhhcccccccccccCCCCcchh----HHHHHHHHHHhc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS-----LEWIDVNKIARENQFYLKYDEQYECPELDED----KLLDELEPRVQG 76 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 76 (172)
++.+|+|+|+|||||||+|+.|+++++. +.+++.|.+... +... ..+ + ..+.. .+...+......
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~--l~~~--~~f-~-~~er~~~i~ri~~v~~~~~~~ 468 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE--LSSE--LGF-T-REDRHTNIQRIAFVATELTRA 468 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH--TCTT--CCC-S-HHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH--hccc--cCC-C-hhHHHHHHHHHHHHHHHHHhC
Confidence 4568999999999999999999999761 245666665442 1110 000 0 00001 111222333445
Q ss_pred CCcEEee-cccc---------cCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhc---cC
Q psy6661 77 GGKIIDY-HSAE---------MFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY---KE 143 (172)
Q Consensus 77 ~~~ii~~-~~~~---------~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 143 (172)
+..|+.. ..+. ++.......+|||+||++++.+|...+ ...... ...+..+.......+ ..
T Consensus 469 g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~-----l~~~~~-~~~i~~~~~~r~~~~~p~~~ 542 (573)
T 1m8p_A 469 GAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG-----IYAAAR-RGEIKGFTGVDDPYETPEKA 542 (573)
T ss_dssp TCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC-----HHHHHH-TTSSSSCBTTTBCCCCCSSC
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhccc-----chhhhh-HHHHHHHHhccccccccCCC
Confidence 5544433 2210 111111236899999999999995321 100000 000000011111111 13
Q ss_pred CcEEeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 144 DIVVSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 144 ~~~i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
+.+||+++.+++++ +++|+..+.+
T Consensus 543 dl~IDts~~s~eev---v~~Il~~l~~ 566 (573)
T 1m8p_A 543 DLVVDFSKQSVRSI---VHEIILVLES 566 (573)
T ss_dssp SEEECTTTSCHHHH---HHHHHHHHHH
T ss_pred CEEEECCCCCHHHH---HHHHHHHHHh
Confidence 68888888899999 6666666643
No 94
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.31 E-value=1.4e-12 Score=104.80 Aligned_cols=146 Identities=19% Similarity=0.197 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHHhhcccccccccccCCCCcch----hHHHHHHHHHHhcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIARENQFYLKYDEQYECPELDE----DKLLDELEPRVQGG 77 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 77 (172)
...+|+|+|+|||||||+++.|+++++. +.+++.|.+.... ... ..+.. .+. ..+...+...+..|
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l--~~~--~~f~~--~er~~~l~~i~~~~~~~l~~G 444 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL--SRG--LGFSK--EDRITNILRVGFVASEIVKHN 444 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT--CTT--CCSSH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh--ccc--ccccH--HHHHHHHHHHHHHHHHHHhCC
Confidence 3567999999999999999999998761 3677877764432 110 00100 001 11222333445555
Q ss_pred C-cEEeeccc---------ccCCcCCcC-EEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhc----c
Q psy6661 78 G-KIIDYHSA---------EMFPERWID-QVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY----K 142 (172)
Q Consensus 78 ~-~ii~~~~~---------~~~~~~~~~-~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 142 (172)
+ +|++...+ .++.. ++ .+|||+||++++.+|+. |+ ..... ....+..++..+ ..| .
T Consensus 445 ~~VI~d~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e~~~~Rl~-r~----~~~~~-~~~~i~~~~~vr-~~~e~~~~ 515 (546)
T 2gks_A 445 GVVICALVSPYRSARNQVRNMMEE--GKFIEVFVDAPVEVCEERDV-KG----LYKKA-KEGLIKGFTGVD-DPYEPPVA 515 (546)
T ss_dssp CEEEEECCCCCHHHHHHHHTTSCT--TCEEEEEEECCGGGHHHHCC-SS----HHHHC-------CCBTTT-BCCCCCSS
T ss_pred CEEEEEcCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHHHHHHHhh-cc----ccccc-cHHHHHHHHhhh-hccccccC
Confidence 4 56664221 12221 46 68999999999999975 22 00000 000011111000 111 1
Q ss_pred CCcEEeCCCCChhhHHHHHHHHHHHHH
Q psy6661 143 EDIVVSLPSNTHDDMSSNVTSIIQFVK 169 (172)
Q Consensus 143 ~~~~i~~~~~~~~e~~~~i~~i~~~~~ 169 (172)
++.+||+++.+++++ +++|++++.
T Consensus 516 adivIDts~~s~eev---~~~I~~~L~ 539 (546)
T 2gks_A 516 PEVRVDTTKLTPEES---ALKILEFLK 539 (546)
T ss_dssp CSEEEETTTSCHHHH---HHHHHHHHH
T ss_pred CcEEEECCCCCHHHH---HHHHHHHHH
Confidence 468888887899999 555555554
No 95
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.28 E-value=2.4e-11 Score=89.19 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+++.+|+|.|++||||||+++.|++.++++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 4578899999999999999999999994266664
No 96
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.27 E-value=9.8e-11 Score=82.96 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC-CceEEehhhHHh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD-SLEWIDVNKIAR 44 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~-~~~~i~~d~~~~ 44 (172)
.++.+|.|+|++||||||+++.|+..++ .+.+++.|.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 4567899999999999999999998765 256777776654
No 97
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.27 E-value=6.8e-11 Score=82.45 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=76.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCc-eEEehhhHHhhcccccccccccCCCCcchhHHHHHH----HHHHhcC-CcEE
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSL-EWIDVNKIARENQFYLKYDEQYECPELDEDKLLDEL----EPRVQGG-GKII 81 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~-~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~ii 81 (172)
.+|+|+|++||||||+++.|++.++ . .+++.+++...... ..-.+.. .........+.+ ......+ .+++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~-g~~~i~~d~~~~~~~~--~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~il 78 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD-NSAYIEGDIINHMVVG--GYRPPWE-SDELLALTWKNITDLTVNFLLAQNDVVL 78 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS-SEEEEEHHHHHTTCCT--TCCCGGG-CHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC-CeEEEcccchhhhhcc--ccccCcc-chhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 5789999999999999999998876 5 78888877543210 0000000 000001111221 1222233 4566
Q ss_pred eecccc--------cC---CcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc-CCcEEeC
Q psy6661 82 DYHSAE--------MF---PERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK-EDIVVSL 149 (172)
Q Consensus 82 ~~~~~~--------~~---~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 149 (172)
+..... ++ .....-.+++|.++++++.+|+..|... ..+ +...... +......+. ...++++
T Consensus 79 d~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d-~~l----d~~~~~~-~~~~~~~~~~~~~ii~t 152 (189)
T 2bdt_A 79 DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD-EQM----GERCLEL-VEEFESKGIDERYFYNT 152 (189)
T ss_dssp ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC---------CGGGGHH-HHHHHHTTCCTTSEEEC
T ss_pred eeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc-ccC----CHHHHHH-HHHHhhcCCCccEEEeC
Confidence 652111 00 0000123578999999999999988632 111 1111222 233223232 3577877
Q ss_pred CCCChhhHHHHHHHHH
Q psy6661 150 PSNTHDDMSSNVTSII 165 (172)
Q Consensus 150 ~~~~~~e~~~~i~~i~ 165 (172)
++.+++++++.+++|+
T Consensus 153 sh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 153 SHLQPTNLNDIVKNLK 168 (189)
T ss_dssp SSSCGGGHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHh
Confidence 7762445555566665
No 98
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.25 E-value=5.7e-12 Score=88.54 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC--CceEEehhhHHhhc-----ccc-ccc--ccccCCCCc-chhHHHHHHH---
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD--SLEWIDVNKIAREN-----QFY-LKY--DEQYECPEL-DEDKLLDELE--- 71 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~--~~~~i~~d~~~~~~-----~~~-~~~--~~~~~~~~~-~~~~~~~~~~--- 71 (172)
.+++|+|+|.|||||+|+++.|.+++| .++++++.+.+++. ++- ... ...+...+- +-..+...+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d 89 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD 89 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence 567899999999999999999998774 27889988887742 110 000 000011000 0001111111
Q ss_pred ---------HHHhcCCcEEeeccc----ccCCcCCcC-E-EEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHH
Q psy6661 72 ---------PRVQGGGKIIDYHSA----EMFPERWID-Q-VYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEE 136 (172)
Q Consensus 72 ---------~~~~~~~~ii~~~~~----~~~~~~~~~-~-~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~ 136 (172)
+......+||++... ..|....+. + +|.+.++++++.+|.-.+.. ..+ +.+ .+.
T Consensus 90 ~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~----~~D--d~e-----sE~ 158 (202)
T 3ch4_B 90 PGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTP----GVD--DAE-----SEC 158 (202)
T ss_dssp TTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCT----TTT--TSH-----HHH
T ss_pred chHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccc----ccc--ccc-----ccc
Confidence 111112355655321 223332222 3 58899999999999422221 111 111 012
Q ss_pred HHhhc-cCCcEEeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 137 ARDSY-KEDIVVSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 137 ~~~~~-~~~~~i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
-+..+ ..+++|.++ .+.+++.++++.++..+++
T Consensus 159 gL~~~~~~D~vI~Nd-gt~eel~~~v~~ll~~~~~ 192 (202)
T 3ch4_B 159 GLDNFGDFDWVIENH-GVEQRLEEQLENLIEFIRS 192 (202)
T ss_dssp TTTTCCCCSEEEEEC-SCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCEEEEeC-CCHHHHHHHHHHHHHHHHH
Confidence 22333 356777655 4999999999999988864
No 99
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.23 E-value=1.6e-10 Score=81.92 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC----CceEEehhhHHhhccccccc---ccccCCCCcchhHHHHHHHHHHh--
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD----SLEWIDVNKIARENQFYLKY---DEQYECPELDEDKLLDELEPRVQ-- 75 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~----~~~~i~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-- 75 (172)
.+..+|.|.|++||||||+++.|+..+. ...++..|.+.......... ........++...+...+.....
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 99 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQE 99 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCC
Confidence 3467899999999999999999998864 14567766653221000000 00000112233333333332211
Q ss_pred ----------------------c--CCcEEeecccccCC------cCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 76 ----------------------G--GGKIIDYHSAEMFP------ERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 76 ----------------------~--~~~ii~~~~~~~~~------~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
. ..+++++....+-+ ...+|.+|||+++.+++.+|+..|
T Consensus 100 ~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 100 RVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp CEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 1 12344553321111 234688999999999999999887
No 100
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.23 E-value=4.3e-11 Score=86.20 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=35.9
Q ss_pred CCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhc--c--CC-cEEeCCCCChhhHHHHHHHHHH
Q psy6661 92 RWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSY--K--ED-IVVSLPSNTHDDMSSNVTSIIQ 166 (172)
Q Consensus 92 ~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~~i~~~~~~~~e~~~~i~~i~~ 166 (172)
..+|.+|||++|++++.+|+.+|++..+........+.+...|.+....| . .. .+||. +.+++++.+++.++++
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-~~~~eev~~~I~~~l~ 223 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA-DLNLENIGTEYQRSES 223 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-CC--------------
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC-CCCHHHHHHHHHHHHH
Confidence 34799999999999999999988743222111012233555566655433 1 22 45554 5688899666666554
Q ss_pred H
Q psy6661 167 F 167 (172)
Q Consensus 167 ~ 167 (172)
.
T Consensus 224 ~ 224 (230)
T 2vp4_A 224 S 224 (230)
T ss_dssp -
T ss_pred H
Confidence 3
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.23 E-value=2.1e-11 Score=86.09 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc---CCce--EEehhhHHhhcccccccc----cccCCCCcchhHHHHHHHHH--
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC---DSLE--WIDVNKIARENQFYLKYD----EQYECPELDEDKLLDELEPR-- 73 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~--~i~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-- 73 (172)
.++.+|.|+|++||||||+++.|+..+ + .. +++.|.+..........+ ..+....+|...+.+.+...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQG-ISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC-CeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 356789999999999999999999865 4 43 345565543210000000 00000112222332322100
Q ss_pred -----------------------HhcC-CcEEeecccccCC---cCCcCEEEEEeCChHHHHHHHHhcC
Q psy6661 74 -----------------------VQGG-GKIIDYHSAEMFP---ERWIDQVYVLSADNTTLYDRLVEKG 115 (172)
Q Consensus 74 -----------------------~~~~-~~ii~~~~~~~~~---~~~~~~~i~l~~~~~~~~~Rl~~r~ 115 (172)
...+ .+|+++.. ++. ...++.+|||+||++++.+|+..|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~--l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVF--LQRKEWRPFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETT--TTSTTTGGGCSEEEEECCC------------
T ss_pred cCCccccCceeccCCCCCCceEEeCCCcEEEEechh--hccHHHHhhcCEEEEEeCCHHHHHHHHhcCC
Confidence 0112 24556543 222 2346889999999999999999987
No 102
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.21 E-value=1.4e-11 Score=98.90 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=68.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC-----CceEEehhhHHhhccccccccc-ccCCCCcchhHHHHHHHHHHhcCCc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD-----SLEWIDVNKIARENQFYLKYDE-QYECPELDEDKLLDELEPRVQGGGK 79 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~~i~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
+..+|+|+|++||||||+++.|+..++ .+.+++.|.+......-..+.. +.. .. ...+..........+++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~-~~--~r~i~~v~q~l~~~~~i 444 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRD-VN--VRRIGFVASEITKNRGI 444 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHH-HH--HHHHHHHHHHHHHTTCE
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHH-HH--HHHHHHHHHHHHhcCCE
Confidence 456899999999999999999999873 1446787777542100000000 000 00 00111111222234554
Q ss_pred EEeecc-c---------ccCCcCCcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhhcc---CCcE
Q psy6661 80 IIDYHS-A---------EMFPERWIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDSYK---EDIV 146 (172)
Q Consensus 80 ii~~~~-~---------~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 146 (172)
++.... + .++.....-..|||++|.+++.+|....-+. . .....+..++..+.+.|. ++++
T Consensus 445 vi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~-----~-~~~~~i~~l~~~r~~~e~P~~adl~ 518 (552)
T 3cr8_A 445 AICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYA-----K-ARAGLIPEFTGVSDPYEVPETPELA 518 (552)
T ss_dssp EEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------CCCCCCSSCSEE
T ss_pred EEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccc-----c-ccHhHHHHHHhccccccCCCCCCEE
Confidence 443211 0 1111111115789999999999996532111 1 111124444544444432 4688
Q ss_pred EeCCCCChhhHHHHHHHHHHHHHh
Q psy6661 147 VSLPSNTHDDMSSNVTSIIQFVKQ 170 (172)
Q Consensus 147 i~~~~~~~~e~~~~i~~i~~~~~~ 170 (172)
||+++.+++++ +++|++++.+
T Consensus 519 Idt~~~s~~e~---v~~Il~~L~~ 539 (552)
T 3cr8_A 519 IDTTGLAIDEA---VQQILLKLEH 539 (552)
T ss_dssp ECCSSCCHHHH---HHHHHHHHHH
T ss_pred EECCCCCHHHH---HHHHHHHHHh
Confidence 88888899998 7777777753
No 103
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.20 E-value=1.9e-10 Score=83.25 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=48.6
Q ss_pred CcCEEEEEeCChHHHHHHHHhcCCCCchhhhhhchHHHHHHHHHHHhh---------ccC--CcEEeCCCCChhhHHHHH
Q psy6661 93 WIDQVYVLSADNTTLYDRLVEKGQSGKKLQDNLQCEIFQTILEEARDS---------YKE--DIVVSLPSNTHDDMSSNV 161 (172)
Q Consensus 93 ~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~i~~~~~~~~e~~~~i 161 (172)
.++.+|||++|++++.+|+.+|++...........+.+...|...... |.. ..+||.+. +++++...+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~-~~~~v~~~i 227 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVND-DFSEEVTKQ 227 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCS-CTTTCHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCC-ChhhCHHHH
Confidence 478999999999999999999875322211111123344445543321 222 24555544 788888888
Q ss_pred HHHHHHHHhc
Q psy6661 162 TSIIQFVKQW 171 (172)
Q Consensus 162 ~~i~~~~~~~ 171 (172)
..+++.+.++
T Consensus 228 ~~i~~~i~~~ 237 (241)
T 2ocp_A 228 EDLMREVNTF 237 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 104
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.19 E-value=7.4e-11 Score=86.17 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC-ceEEehhhHHhhcccccccccccCCCC---cc--hhHHH-HHHHHHHhcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS-LEWIDVNKIARENQFYLKYDEQYECPE---LD--EDKLL-DELEPRVQGG 77 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~-~~~i~~d~~~~~~~~~~~~~~~~~~~~---~~--~~~~~-~~~~~~~~~~ 77 (172)
+++.+|+|+|+|||||||+++.|+++++. +.+++.|.+.....-+........... .+ ...+. ..+...+..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 109 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSLG 109 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 34678999999999999999999999861 456677766432211000001111111 00 11222 2223344454
Q ss_pred -CcEEeeccccc---------CCcCCcCE-EEEEeCChHHHHHHHHhc
Q psy6661 78 -GKIIDYHSAEM---------FPERWIDQ-VYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 78 -~~ii~~~~~~~---------~~~~~~~~-~i~l~~~~~~~~~Rl~~r 114 (172)
++|+++..... +......+ ++|+.+|++++.+|+..|
T Consensus 110 ~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 110 YNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 78888754322 11111222 468899999999999877
No 105
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.18 E-value=1e-10 Score=81.48 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+++|+||+||||||+++.|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998754
No 106
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.16 E-value=1.1e-10 Score=82.26 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+++.+|+|+|+|||||||+++.|++.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999999876
No 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.14 E-value=5e-10 Score=81.30 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
.++.+|.|+|++||||||+++.|+..+| ..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG-~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG-QN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT-GG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc-hh
Confidence 3466899999999999999999999888 65
No 108
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.10 E-value=2.5e-10 Score=86.13 Aligned_cols=35 Identities=31% Similarity=0.534 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
.++|+|+||+||||||++..|+++++ ..+|+.|..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC-CcEEccccc
Confidence 35899999999999999999999999 999998887
No 109
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.08 E-value=1.3e-09 Score=82.02 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC------CceEEehhhHHhhc------ccccccccccCCCCcchhHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD------SLEWIDVNKIAREN------QFYLKYDEQYECPELDEDKLLDELEPR 73 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~------~~~~i~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (172)
++.+|.|+|++||||||+++.|...++ ...+++.|.+.... ......+. ...+|...+.+.+..+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~---P~~~D~~~l~~~L~~L 167 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGF---PESYDMPSLLRVLNAI 167 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTS---GGGBCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccC---cccccHHHHHHHHHhh
Confidence 456899999999999999999998764 14567777764321 11111110 1123444455555433
Q ss_pred HhcC--------------------------C-cEEeecccccC------------CcCCcCEEEEEeCChHHHHHHHHhc
Q psy6661 74 VQGG--------------------------G-KIIDYHSAEMF------------PERWIDQVYVLSADNTTLYDRLVEK 114 (172)
Q Consensus 74 ~~~~--------------------------~-~ii~~~~~~~~------------~~~~~~~~i~l~~~~~~~~~Rl~~r 114 (172)
.... . +|+++...... -...+|.+|||+++.+++.+|+..|
T Consensus 168 ~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~R 247 (321)
T 3tqc_A 168 KSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDR 247 (321)
T ss_dssp HTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred hccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHh
Confidence 2211 0 23333221111 1134688999999999999999888
Q ss_pred C
Q psy6661 115 G 115 (172)
Q Consensus 115 ~ 115 (172)
.
T Consensus 248 d 248 (321)
T 3tqc_A 248 V 248 (321)
T ss_dssp H
T ss_pred c
Confidence 5
No 110
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=99.08 E-value=4.7e-11 Score=86.48 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=32.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhh
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARE 45 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~ 45 (172)
.+|.|+|++||||||+++.|++++| ++++..++.+++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g-~~~~~~~~~~~~ 38 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS-AVKYQLAGPIKD 38 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC-EEECCTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-CeEEecChHHHH
Confidence 5899999999999999999999899 999987766544
No 111
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.05 E-value=5.3e-10 Score=77.49 Aligned_cols=27 Identities=11% Similarity=0.432 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+..+|+|+|||||||||+++.|.+.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999998764
No 112
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.05 E-value=2.2e-10 Score=82.37 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=17.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH-HHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVV-KQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~-~~l 31 (172)
++.+|+|+||+||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46789999999999999999999 765
No 113
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.01 E-value=7e-09 Score=77.80 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC------CceEEehhhHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD------SLEWIDVNKIA 43 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~------~~~~i~~d~~~ 43 (172)
.++.+|.|+|++||||||+++.|+..++ .+.+++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4567899999999999999999998754 14566767654
No 114
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.99 E-value=2.5e-09 Score=75.15 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=25.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++...|+|.||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4678899999999999999999998865
No 115
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.97 E-value=2.1e-09 Score=85.98 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCc-----eEEehhhHHhhc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSL-----EWIDVNKIAREN 46 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~-----~~i~~d~~~~~~ 46 (172)
+..+|+|+|.|||||||+|+.|++.++ + .+++.|++....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~-~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN-WIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCCeEEecccHHHHHh
Confidence 346799999999999999999999874 3 346778876653
No 116
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.97 E-value=2.1e-09 Score=85.52 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCc-------eEEehhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSL-------EWIDVNK 41 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~-------~~i~~d~ 41 (172)
...+|+|+|+|||||||++++|+++|+ . .+++.|.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~-~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL-QFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT-TSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH-HhhcCcceEEecCCC
Confidence 456899999999999999999999998 5 5666655
No 117
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.91 E-value=6.6e-10 Score=84.06 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=33.4
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
|+.|.+.++|+|+||+||||||++..|+++++ ..+++.|.+
T Consensus 1 ~~~m~m~~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~ 41 (340)
T 3d3q_A 1 MTEMTKPFLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSM 41 (340)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSS
T ss_pred CCCCCCCceEEEECCCcCcHHHHHHHHHHHcC-Cceeccccc
Confidence 55554345899999999999999999999999 999999987
No 118
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.91 E-value=3.9e-11 Score=85.08 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++|+|.|++||||||+++.|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999885
No 119
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.82 E-value=9e-09 Score=80.36 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++-|+|.||||||||++|+++|.+++ ++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~-~~f~~ 245 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN-ATFLK 245 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT-CEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC-CCEEE
Confidence 467799999999999999999999999 88875
No 120
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.81 E-value=2.7e-09 Score=80.23 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=32.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIA 43 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~ 43 (172)
++|+|+||+||||||++..|+++++ ..+++.|.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-CELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-EEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-CcEEeccchh
Confidence 5899999999999999999999999 9999998763
No 121
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.76 E-value=6.9e-09 Score=80.10 Aligned_cols=32 Identities=31% Similarity=0.634 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++-|+|.||||||||++|+++|.+++ ++++.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~-~~f~~ 212 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD-CKFIR 212 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT-CEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC-CCceE
Confidence 456799999999999999999999999 98875
No 122
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.74 E-value=8.9e-09 Score=77.79 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=26.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+++...|.|.|+.||||||+++.|++.++
T Consensus 4 ~~~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 4 MVTIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999999986
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.73 E-value=2.6e-07 Score=64.87 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+...++|.||+||||||+++.|...+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356789999999999999999998764
No 124
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.3e-08 Score=79.48 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++-|+|.||||||||++|+++|..++ ++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~-~~~~~ 245 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG-ANFIF 245 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT-CEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC-CCEEE
Confidence 457799999999999999999999999 88774
No 125
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.6e-08 Score=78.50 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++-|+|.||||||||++|+++|.+++ ++++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~-~~fi~ 246 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTS-ATFLR 246 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHT-CEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhC-CCEEE
Confidence 457799999999999999999999999 88875
No 126
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3e-08 Score=77.35 Aligned_cols=32 Identities=31% Similarity=0.593 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++-|+|.||||||||++|+++|+.++ ++++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~-~~~~~ 236 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK-AAFIR 236 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT-CEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-CCeEE
Confidence 456799999999999999999999999 88875
No 127
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.67 E-value=1.4e-07 Score=74.53 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCce-----EEehhhHHhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLE-----WIDVNKIARE 45 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~-----~i~~d~~~~~ 45 (172)
+...|+|+|.|||||||+++.|++.++ .. .++.|++...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRD 81 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhh
Confidence 345799999999999999999999875 44 4445555443
No 128
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.66 E-value=1.8e-08 Score=75.18 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
++++|+|+||+||||||++..|+++++ ..+++.|..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-VELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-CcEEecccc
Confidence 356799999999999999999999999 999987764
No 129
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.62 E-value=2.8e-07 Score=69.19 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC------CceEEehhhH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD------SLEWIDVNKI 42 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~------~~~~i~~d~~ 42 (172)
.+..+|.|.|++||||||+++.|+..+. .+.++..|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 4567899999999999999999998653 1445665554
No 130
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.61 E-value=2.7e-08 Score=74.36 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
+.++|+|+||+||||||++..|+++++ ..+|+.|..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc-cceeecCcc
Confidence 356899999999999999999999999 999998876
No 131
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.5e-08 Score=78.08 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
..++-|+|.||||||||++|+++|.+++ ++++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~-~~fi~ 273 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD-ATFIR 273 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT-CEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC-CCeEE
Confidence 3467799999999999999999999999 88875
No 132
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.50 E-value=3.8e-07 Score=76.14 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
..++-|+|.||||||||++|++++++++ .+++..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg-~~~~~v 269 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-AFFFLI 269 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT-CEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC-CeEEEE
Confidence 3467799999999999999999999999 887753
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.45 E-value=1.4e-07 Score=70.13 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+.+..++|.||||||||++|+++++.++ .+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~-~~~i~ 66 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG-INPIM 66 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT-CCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 3456789999999999999999999999 87764
No 134
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.36 E-value=2.3e-07 Score=77.42 Aligned_cols=32 Identities=28% Similarity=0.711 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
..+.|+|.||||||||.+|++++.+++ .+++.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~-~~f~~ 541 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ-ANFIS 541 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTT-CEEEE
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhC-CceEE
Confidence 456799999999999999999999999 99885
No 135
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.35 E-value=3.9e-07 Score=66.19 Aligned_cols=32 Identities=25% Similarity=0.564 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....|+|+|+|||||||+++++++.++ .+++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~-~~~~~ 69 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ-VPFLA 69 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT-CCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 456799999999999999999999998 77764
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.34 E-value=4.3e-07 Score=66.03 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...++|+|+|||||||+++++++.++ .+++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~-~~~~~ 75 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK-VPFFT 75 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT-CCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC-CCEEE
Confidence 45699999999999999999999988 77664
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.33 E-value=4.8e-07 Score=67.47 Aligned_cols=33 Identities=27% Similarity=0.720 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
....|+|+|||||||||+++++++.++ .+++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v 80 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISI 80 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEE
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEE
Confidence 456799999999999999999999998 887753
No 138
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.32 E-value=3.2e-07 Score=70.85 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNK 41 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~ 41 (172)
.++|+|+||+||||||++..|+++++ ..+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-CeEeecCc
Confidence 35799999999999999999999999 99999877
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.31 E-value=5.8e-07 Score=66.64 Aligned_cols=32 Identities=28% Similarity=0.706 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....++|+|+|||||||+++++++.++ .+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~-~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS-ATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT-CEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC-CCeEE
Confidence 357899999999999999999999998 87764
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.31 E-value=5.8e-07 Score=66.21 Aligned_cols=33 Identities=33% Similarity=0.614 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.....++|+|+|||||||+++++++.++ .+++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~-~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN-ATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT-CEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC-CCEEE
Confidence 3456799999999999999999999998 87764
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.29 E-value=6.1e-07 Score=68.55 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
....|+|+||||||||++|+++++.++ .+++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~-~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD-VPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-CCEEEe
Confidence 456799999999999999999999998 888754
No 142
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.28 E-value=8.1e-07 Score=69.56 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNK 41 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~ 41 (172)
.+..|+|.|||||||||++++|++.++ ++++..+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~-~~~~~v~~ 83 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-APFIKVEA 83 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEG
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcC-CCceeecc
Confidence 356799999999999999999999999 98887553
No 143
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.26 E-value=7.8e-07 Score=66.92 Aligned_cols=31 Identities=35% Similarity=0.644 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...|+|+||||||||++|+++++.++ .+++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~-~~~~~ 81 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN-STFFS 81 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT-CEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC-CCEEE
Confidence 56799999999999999999999998 88764
No 144
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.25 E-value=7.9e-07 Score=63.42 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
|.+..+++|.||+||||||+.+.|...+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56788999999999999999999998765
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.24 E-value=8.2e-07 Score=65.45 Aligned_cols=30 Identities=33% Similarity=0.739 Sum_probs=26.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.-++|.|||||||||++++++..++ ..++.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~-~~~i~ 74 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESG-LNFIS 74 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTT-CEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcC-CCEEE
Confidence 3499999999999999999999988 76654
No 146
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.22 E-value=6.5e-07 Score=65.64 Aligned_cols=33 Identities=21% Similarity=0.607 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
....++|+|+||||||++|+++++.++ ++++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~-~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN-FPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT-CSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC-CCEEEE
Confidence 456799999999999999999999998 887653
No 147
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.22 E-value=1.1e-06 Score=67.41 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
....|+|+|+|||||||+|+.+++.++ .+++..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~ 103 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD-IPIAIS 103 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC-CCEEEe
Confidence 356799999999999999999999998 887654
No 148
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.21 E-value=1.3e-06 Score=65.84 Aligned_cols=31 Identities=35% Similarity=0.589 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc-CCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC-DSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~~i~ 38 (172)
.+.|+|+||||||||++|+++++.+ + .+++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~-~~~~~ 76 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANN-STFFS 76 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTS-CEEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCC-CcEEE
Confidence 4679999999999999999999998 5 66653
No 149
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.21 E-value=1.1e-06 Score=65.16 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....++|+|+||||||++++.+++.++ .+++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~ 80 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN-APFIK 80 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT-CCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 356799999999999999999999998 77654
No 150
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.19 E-value=1.1e-06 Score=61.56 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
....|+|+|++||||||++..|+++ + ..+++.|..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~-g-~~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR-G-HRLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT-T-CEEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh-C-CeEEecchh
Confidence 3567999999999999999999987 6 577776654
No 151
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.19 E-value=1.3e-06 Score=66.58 Aligned_cols=31 Identities=35% Similarity=0.644 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...|+|+||||||||++|+++++.++ .+++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~-~~~~~ 114 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN-STFFS 114 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT-CEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC-CCEEE
Confidence 45699999999999999999999999 88764
No 152
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.18 E-value=1.2e-06 Score=60.33 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++++.++|+|++||||||+++.|.+.+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998764
No 153
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.18 E-value=1.7e-06 Score=59.26 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+|||||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999986
No 154
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.17 E-value=2e-05 Score=58.62 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=24.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...+|+|.|.-||||||+++.|.+.+.
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ld 111 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMN 111 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999999986
No 155
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.17 E-value=4.1e-07 Score=69.16 Aligned_cols=29 Identities=31% Similarity=0.708 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEW 36 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~ 36 (172)
...|+|.|+|||||||+++.|++.++ +++
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~-~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIIN-EKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-HHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhC-CCe
Confidence 45699999999999999999999999 888
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=1.1e-06 Score=60.58 Aligned_cols=28 Identities=39% Similarity=0.656 Sum_probs=24.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceE
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEW 36 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~ 36 (172)
.+++|+|++||||||+++.|+..++ +.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~-i~~ 28 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG-KRA 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG-GGE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CcC
Confidence 3689999999999999999999876 554
No 157
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.15 E-value=5.5e-07 Score=65.78 Aligned_cols=31 Identities=29% Similarity=0.641 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...++|+|+|||||||+++++++.++ .+++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~-~~~~~ 74 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH-VPFFS 74 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT-CCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC-CCEEE
Confidence 44589999999999999999999988 77664
No 158
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.15 E-value=1.4e-06 Score=59.58 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+++++|.|+|++||||||++..|...+
T Consensus 2 ~~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 2 NAMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999998765
No 159
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.15 E-value=2e-06 Score=65.66 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....|+|+|+|||||||+++++++.++ .+++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~-~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG-ATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT-CEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC-CeEEE
Confidence 456799999999999999999999998 88764
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.14 E-value=1.8e-06 Score=62.64 Aligned_cols=30 Identities=30% Similarity=0.664 Sum_probs=26.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+-++|.|+|||||||+++.++..++ .+++.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~-~~~i~ 79 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEAR-VPFIT 79 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT-CCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 3499999999999999999999887 66654
No 161
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.14 E-value=1.5e-06 Score=59.40 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+||+||||+++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999987
No 162
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.14 E-value=1.2e-06 Score=60.26 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc----C-CceEEehhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC----D-SLEWIDVNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l----~-~~~~i~~d~~~ 43 (172)
+...++|.||+||||||+++.++..+ | .+.+++..++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 35789999999999999999998775 3 13355555543
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.12 E-value=2.3e-06 Score=64.52 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
....++|+|+|||||||+++.+++.++ .+++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~-~~~~~~ 86 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMS-ANIKTT 86 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTT-CCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC-CCeEEe
Confidence 346799999999999999999999998 887654
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.12 E-value=2.9e-06 Score=63.07 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+||||||++++.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999887
No 165
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.11 E-value=1.6e-06 Score=64.48 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC------ceEE-ehhhHHh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS------LEWI-DVNKIAR 44 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~------~~~i-~~d~~~~ 44 (172)
.+..+|.|+|++||||||+++.|++.++. ...+ +.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 34678999999999999999999988751 2334 7787754
No 166
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.11 E-value=2.4e-06 Score=64.66 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceE
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEW 36 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~ 36 (172)
...++|.|||||||||+++.++..++ +++
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~-~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ-TNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT-CCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC-CCE
Confidence 46799999999999999999999987 654
No 167
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.10 E-value=3e-06 Score=65.35 Aligned_cols=31 Identities=26% Similarity=0.612 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...|+|+|+||||||++|++++++++ .+++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~-~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN-ATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT-CEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc-CcEEE
Confidence 56899999999999999999999999 88774
No 168
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.08 E-value=2e-06 Score=60.52 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
...++|.|||||||||+|.+|++.+. ..++.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~-g~i~~f 89 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ-GAVISF 89 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT-CEECCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC-CCeeeE
Confidence 35699999999999999999999987 665543
No 169
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.08 E-value=2.9e-06 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....|+|+|+||||||++|+++.+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999999865
No 170
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.07 E-value=2.8e-06 Score=60.45 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.||+||||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999999876
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=3.4e-06 Score=67.44 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
.+.++|+||||+||||+++++++.++ ++++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~-~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG-YDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT-CEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-CCEEEE
Confidence 46899999999999999999999999 888753
No 172
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.06 E-value=3.2e-06 Score=62.16 Aligned_cols=31 Identities=29% Similarity=0.643 Sum_probs=26.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
+-++|.|+|||||||+++.++..++ .+++..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~-~~~i~~ 104 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEAR-VPFITA 104 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT-CCEEEE
T ss_pred CeEEEECCCcChHHHHHHHHHHHcC-CCEEEe
Confidence 3499999999999999999999887 766543
No 173
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.06 E-value=2.4e-06 Score=58.46 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~ 43 (172)
+..++.|.|++||||||+++.+. .+ ...++.|.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~-~~~~~~d~~~ 42 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KP-TEVISSDFCR 42 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CG-GGEEEHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cC-CeEEccHHHH
Confidence 45689999999999999999864 24 6777766553
No 174
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.06 E-value=3.9e-06 Score=65.91 Aligned_cols=31 Identities=35% Similarity=0.589 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc-CCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC-DSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~~i~ 38 (172)
...|+|+||||||||++|+++++.+ + .+++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~-~~~~~ 198 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANN-STFFS 198 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCS-SEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC-CCEEE
Confidence 4679999999999999999999998 6 66653
No 175
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=98.05 E-value=3.4e-06 Score=57.65 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
..-|+|+|+||+||||++.+|.++ | +.++.-|.+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G-~~lvaDD~v 49 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-G-HQLVCDDVI 49 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-T-CEEEESSEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-C-CeEecCCEE
Confidence 456899999999999999999986 8 888875544
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.04 E-value=3.6e-06 Score=66.60 Aligned_cols=31 Identities=32% Similarity=0.661 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
++.|+|.|||||||||++++++.+++ .+++.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~-~~f~~ 79 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEAN-VPFFH 79 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHT-CCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-CCeee
Confidence 45699999999999999999999998 88764
No 177
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.03 E-value=3.8e-06 Score=63.08 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---CCce--EEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---DSLE--WIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~--~i~~d~~ 42 (172)
....++|+|+|||||||+++.+++.+ + .+ +++..++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~-~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRG-YRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEEHHHH
Confidence 35679999999999999999999877 5 44 4555544
No 178
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.02 E-value=4.1e-06 Score=58.98 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+..++.|.||+||||||+++.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999998764
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.01 E-value=3.4e-06 Score=60.07 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCC----ceEEehhhHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDS----LEWIDVNKIA 43 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~----~~~i~~d~~~ 43 (172)
....++|+|+|||||||+++.+++.+.. +.+++..++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 4678999999999999999999987531 3456655543
No 180
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.01 E-value=4.5e-05 Score=56.74 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+..+.|+|.|| ||+|+.+.|.+.+.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence 34577999998 79999999998764
No 181
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.00 E-value=5.5e-06 Score=65.15 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...++|+|+|||||||+++.+++.++ .+++.
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~-~~f~~ 80 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYAN-ADVER 80 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTT-CEEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhC-CCeEE
Confidence 35799999999999999999999998 87765
No 182
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.99 E-value=6.2e-06 Score=65.51 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
....|+|+|+||||||++++++++.++ .+++..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~-~~fv~v 269 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETG-AFFFLI 269 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCS-SEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhC-CCEEEE
Confidence 456799999999999999999999998 887753
No 183
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.98 E-value=4.5e-06 Score=58.29 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=28.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEehhhHHh
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDVNKIAR 44 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~d~~~~ 44 (172)
..++|+|++||||||+++++++.+ + .+.+++..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 789999999999999999999876 3 033456555433
No 184
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.97 E-value=3.7e-06 Score=56.30 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|.|++||||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999876
No 185
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.96 E-value=7.1e-06 Score=63.06 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.....|+|.|||||||||+++.|+..++ ..++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~-g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG-GKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC-CEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC-CcEEE
Confidence 3567899999999999999999999888 66655
No 186
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.95 E-value=3.4e-05 Score=57.29 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..+.|+|+|| ||+|+.+.|.+.+.
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYP 122 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhCh
Confidence 4566888888 49999999998876
No 187
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.95 E-value=4.1e-06 Score=57.80 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceE
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEW 36 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~ 36 (172)
+|+|+|++||||||+|..|+.. + .+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~ 26 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-PQV 26 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-SSE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-CCe
Confidence 3799999999999999999987 6 554
No 188
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.94 E-value=2.1e-06 Score=58.92 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++.+.|+|++||||||+++.|...+.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 47899999999999999999987753
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.93 E-value=6.2e-06 Score=61.67 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
...++|+|+||+||||+++.+++.++ .+++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~-~~~~~ 68 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG-VNLRV 68 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT-CCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 46799999999999999999999988 77653
No 190
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.92 E-value=5.3e-06 Score=62.32 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.++..++|+||||||||++++.+++++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999999987
No 191
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.91 E-value=7.1e-06 Score=57.47 Aligned_cols=25 Identities=32% Similarity=0.691 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++|+|++|+||||+++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999999875
No 192
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.91 E-value=7.4e-06 Score=62.43 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.....++|+|+||+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999887
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.91 E-value=6.4e-06 Score=62.71 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...++|+||||+|||++++++++.++
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999999987
No 194
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.90 E-value=9.1e-06 Score=64.67 Aligned_cols=31 Identities=29% Similarity=0.636 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.+-++|.|||||||||++++++..++ .+++.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~-~~~i~ 94 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR-VPFIT 94 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT-CCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 34599999999999999999999988 77664
No 195
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.89 E-value=6.6e-06 Score=61.89 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=26.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
..++|.|+||+|||++++.+++.++ .+++.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~-~~~~~ 76 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMD-LDFHR 76 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTT-CCEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC-CCeEE
Confidence 5799999999999999999999988 76543
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.89 E-value=9.3e-06 Score=65.34 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
+...++|.|||||||||+++.++..++ .+++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~ 138 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVR 138 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEE
Confidence 467899999999999999999999987 66553
No 197
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.89 E-value=7.4e-06 Score=64.53 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...++|.||||||||++|+++++.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46799999999999999999999986
No 198
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.88 E-value=1.1e-05 Score=61.61 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+||+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.88 E-value=9.5e-06 Score=64.13 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+||+|||++++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999986
No 200
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.87 E-value=9.2e-06 Score=60.37 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..++|+|+|||||||+++.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 369999999999999999999986
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.87 E-value=1.1e-05 Score=60.53 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
...+++.|+||+||||+++++++.++ .+++..
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~-~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN-ADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT-EEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC-CCEEEE
Confidence 45678888899999999999999998 887653
No 202
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.87 E-value=9.8e-06 Score=68.11 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEeh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDV 39 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~ 39 (172)
.....|+|+|+|||||||++++++..++ .+++..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~-~~~i~v 269 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETG-AFFFLI 269 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTT-CEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcC-CcEEEE
Confidence 3466799999999999999999999988 777643
No 203
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.87 E-value=9.7e-06 Score=54.82 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+..++.|.|+.||||||+.+.|+..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456899999999999999999998764
No 204
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.86 E-value=9.5e-06 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..++|+|++|+||||+++.+++.++
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998875
No 205
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.85 E-value=5.7e-06 Score=62.18 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+++++++|+|++||||||+.+.|....
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999998653
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.84 E-value=1.3e-05 Score=60.91 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|++|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999877
No 207
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.82 E-value=1.6e-05 Score=60.78 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.++|+|++|+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999987
No 208
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.82 E-value=3.7e-06 Score=55.74 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....|+|+|+||||||++|+++.+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34569999999999999999998753
No 209
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.81 E-value=1.3e-05 Score=57.58 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVV 28 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~ 28 (172)
+..++.|.||+||||||+++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 56789999999999999999887
No 210
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.81 E-value=1.1e-05 Score=58.09 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.||+||||||+.+.|+..+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356789999999999999999997654
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.81 E-value=1.1e-05 Score=58.96 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..+++|+||+||||||+.+.|...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999999999998764
No 212
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.80 E-value=1.4e-05 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999999875
No 213
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.79 E-value=1.5e-05 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..+++++|++||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999997666554
No 214
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=1.3e-05 Score=60.56 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+.++|+|||||||||+++.+++.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4499999999999999999999863
No 215
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.78 E-value=1.5e-05 Score=59.49 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
.+...+.|.||+||||||+++.|...+. -.++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~-G~I~ 155 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLG-GSVL 155 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHT-CEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcC-ceEE
Confidence 4567899999999999999999998764 4443
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.78 E-value=2e-05 Score=58.89 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.+|.|.|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 217
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.76 E-value=1.4e-05 Score=57.16 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997644
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.76 E-value=1.8e-05 Score=66.02 Aligned_cols=27 Identities=41% Similarity=0.721 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.....++|+|+|||||||+++.|++.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999997
No 219
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.75 E-value=2.4e-05 Score=54.91 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+.+++++|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3458999999999999999886433
No 220
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=97.74 E-value=6.4e-06 Score=62.17 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.....|.|.|+.||||||+++.|++.+.
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999999875
No 221
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.74 E-value=1.6e-05 Score=57.25 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..++.|.|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999754
No 222
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.74 E-value=2e-05 Score=61.78 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++|+|+||+||||+++++++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999876
No 223
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=1.8e-05 Score=59.75 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..++|+|+||+||||+++.+++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999998864
No 224
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.74 E-value=1.4e-05 Score=56.60 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.72 E-value=2.4e-05 Score=56.92 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+|+|+||||||++|+.+++.++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 346799999999999999999998763
No 226
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.72 E-value=8.7e-06 Score=62.34 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++...|.|.|+.||||||+++.|++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4566799999999999999999999875
No 227
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.72 E-value=2.1e-05 Score=58.80 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC-C--c--eEEehhhHHh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD-S--L--EWIDVNKIAR 44 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~-~--~--~~i~~d~~~~ 44 (172)
...++|+|+||+|||+++.++++.+. . . .++...++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 57899999999999999999987532 1 3 3456655543
No 228
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.72 E-value=2.3e-05 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..+++|.|++||||||+++.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999854
No 229
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=1.7e-05 Score=59.96 Aligned_cols=25 Identities=36% Similarity=0.705 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+.++|+||+||||||+++.+++.+
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3449999999999999999999853
No 230
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.71 E-value=0.00039 Score=55.27 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....+|+|.|..||||+|+++.|.+.+.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~ 68 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMD 68 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999999999986
No 231
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.70 E-value=2.1e-05 Score=57.56 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998654
No 232
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.70 E-value=2.4e-05 Score=56.44 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.++.|.|++||||||+.+.++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998654
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.70 E-value=2.6e-05 Score=54.88 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcCC-ceEEehh
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCDS-LEWIDVN 40 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~-~~~i~~d 40 (172)
.+..+++|.|+|||||||++..++..-+. ..+++.+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 45678999999999999999999863331 3455543
No 234
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.70 E-value=1.9e-05 Score=58.12 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.||+||||||+.+.|+..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 46789999999999999999998654
No 235
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.69 E-value=2e-05 Score=55.91 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 236
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.69 E-value=1.3e-05 Score=60.40 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..++|+|+||||||++++.+++.++
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4599999999999999999999876
No 237
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.69 E-value=2.2e-05 Score=57.60 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46789999999999999999998654
No 238
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.68 E-value=2.1e-05 Score=56.98 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999997654
No 239
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.68 E-value=2.7e-05 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..++.|.|++||||||+.+.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 240
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=2.7e-05 Score=58.01 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=23.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+.++|+|+||+||||+++.+++.+.
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34699999999999999999998863
No 241
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.67 E-value=2.4e-05 Score=57.25 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 56789999999999999999998654
No 242
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.67 E-value=2.2e-05 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..++.|.|++||||||+.+.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 243
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.67 E-value=2.4e-05 Score=56.05 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.67 E-value=3.9e-05 Score=56.12 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...|+|.||||||||+++.+|++.++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45699999999999999999998765
No 245
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.67 E-value=2.5e-05 Score=57.44 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998654
No 246
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.66 E-value=0.00049 Score=54.67 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...+|+|.|.-||||+|.++.|.+.+.
T Consensus 299 ~~vlIvfEG~DaAGKg~~Ik~l~~~ld 325 (500)
T 3czp_A 299 HSLVAVFEGNDAAGKGGAIRRVTDALD 325 (500)
T ss_dssp CEEEEEEEESTTSCHHHHHHHHHTTSC
T ss_pred CCEEEEEeccCCCCHHHHHHHHHHhcC
Confidence 456799999999999999999999885
No 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.66 E-value=2.1e-05 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 248
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.66 E-value=3.2e-05 Score=56.69 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..++.|.|++||||||+.+.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 249
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.66 E-value=2.5e-05 Score=57.02 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 56789999999999999999997644
No 250
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.66 E-value=2.6e-05 Score=58.35 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.+|+|+|++||||||++..|+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 251
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.65 E-value=2.5e-05 Score=56.37 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 252
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.65 E-value=2.7e-05 Score=56.76 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998654
No 253
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.65 E-value=2.5e-05 Score=56.95 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999997654
No 254
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.65 E-value=2.8e-05 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.++.|.|++||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999765
No 255
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.64 E-value=0.001 Score=48.86 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...+|+|.|..||||+++.+.|.+.+.
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ld 100 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMD 100 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcC
Confidence 456799999999999999999999986
No 256
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.64 E-value=2.8e-05 Score=58.69 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.+|.|.|++||||||+++.|+..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 257
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.64 E-value=4.9e-05 Score=51.41 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 3 SKRTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...+...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456788999999999999999999753
No 258
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.64 E-value=3.3e-05 Score=57.34 Aligned_cols=25 Identities=32% Similarity=0.691 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+.++|+|+||+||||+++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 38 IPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECcCCcCHHHHHHHHHHHh
Confidence 3459999999999999999999886
No 259
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.63 E-value=2.9e-05 Score=59.33 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....++|+|++||||||+.+.|...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999998764
No 260
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.62 E-value=2.7e-05 Score=59.49 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCce
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLE 35 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 35 (172)
...+.|.|++||||||+++.|+..+. ..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~-~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN-TT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT-CE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC-CC
Confidence 46789999999999999999999876 44
No 261
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.62 E-value=3e-05 Score=56.26 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999997654
No 262
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.62 E-value=3.5e-05 Score=58.77 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.-++.|.||+||||||+.+.++..+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 46789999999999999999998754
No 263
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.62 E-value=1.6e-05 Score=66.82 Aligned_cols=32 Identities=28% Similarity=0.711 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
....++|.|||||||||+++++++.++ .+++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~ 541 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ-ANFIS 541 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHT-CCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhC-CCEEE
Confidence 456799999999999999999999988 77664
No 264
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.61 E-value=3.2e-05 Score=56.64 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999998654
No 265
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.61 E-value=2.4e-05 Score=52.94 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=24.2
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|........|+|.|.+|+||||+.+.|...
T Consensus 1 m~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp -CCCEEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCccceeEEEEECCCCCCHHHHHHHHHcC
Confidence 444445678999999999999999999754
No 266
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.61 E-value=3.3e-05 Score=58.95 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..+|+|+||+||||||+.+.+...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3489999999999999999998765
No 267
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.61 E-value=4e-05 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..++.|.|+|||||||++..++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999999974
No 268
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.60 E-value=3.3e-05 Score=57.00 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999997654
No 269
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.60 E-value=1.5e-05 Score=60.30 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCCCHHHHH-HHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLC-EEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a-~~L~~~l~ 32 (172)
.+..+|.|.|+.||||||++ +.|++.++
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999 99999887
No 270
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.60 E-value=6.2e-05 Score=56.49 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=29.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
..++|+|++|+||||+++.+.++.+ +.+++....
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~~~~ 65 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP-GILIDCREL 65 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS-EEEEEHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC-cEEEEeecc
Confidence 6899999999999999999999988 888876543
No 271
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.59 E-value=4.3e-05 Score=58.07 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..++|+|++|+||||+++.+++.++
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999876
No 272
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.59 E-value=4.5e-05 Score=58.63 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.-++.|.||+||||||+.+.++..+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 46789999999999999999998654
No 273
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.59 E-value=3.9e-05 Score=57.32 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
..-|+|+|+||+||||+|..|.++ | +.++.-|.+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~-G-~~lv~DD~v 180 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK-N-HLFVGDDAI 180 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT-T-CEEEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-C-CEEEeCCEE
Confidence 456899999999999999999875 8 888875544
No 274
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.58 E-value=3.6e-05 Score=56.01 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 275
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.58 E-value=5.2e-05 Score=63.27 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=26.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCceEEe
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCDSLEWID 38 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~ 38 (172)
.++|+|+||||||++|+.+++.++ .+++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~-~~~~~ 518 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG-IELLR 518 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-CEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc-CCEEE
Confidence 699999999999999999999998 77654
No 276
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.58 E-value=4.6e-05 Score=56.42 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..+++|.|+|||||||+++.++..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999988654
No 277
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=4.5e-05 Score=56.73 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+.++|+|++|+||||+++.+++.+
T Consensus 42 ~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 42 MPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3459999999999999999999886
No 278
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.57 E-value=3.6e-05 Score=59.08 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...+|+|+|++||||||+.+.|...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999999998765
No 279
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.57 E-value=4.7e-05 Score=58.11 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.||+||||||+.+.++..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 46789999999999999999998654
No 280
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.57 E-value=4.8e-05 Score=53.33 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|....+...|+|.|.+|+||||+...|...
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 555556789999999999999999999864
No 281
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.57 E-value=5e-05 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.||+||||||+.+.++..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 46789999999999999999998654
No 282
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.57 E-value=4.9e-05 Score=52.42 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|+.......|+|.|.+|+||||+.+.|...
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 444456678999999999999999999763
No 283
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.57 E-value=4.7e-05 Score=64.38 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+|||||||+++.|++.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999987
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.56 E-value=3.4e-05 Score=61.43 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...|+|.|+||+|||++|+++++.++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 35799999999999999999999875
No 285
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.56 E-value=4.7e-05 Score=56.63 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc----C-CceEEehhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC----D-SLEWIDVNK 41 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l----~-~~~~i~~d~ 41 (172)
+..+|+|+|++||||||++..|+..+ | ...+++.|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46789999999999999999998654 3 134556554
No 286
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.56 E-value=5.3e-05 Score=58.13 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.||+||||||+.+.++..+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 46789999999999999999998654
No 287
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.55 E-value=5e-05 Score=57.89 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.||+||||||+.+.++..+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 288
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.54 E-value=4.6e-05 Score=58.20 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.+|.|.|++||||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46689999999999999999999765
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.54 E-value=5e-05 Score=50.43 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
++.|++.|.+|+||||+.+.|...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999865
No 290
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.54 E-value=6.4e-05 Score=56.25 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=28.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKI 42 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~ 42 (172)
..-++|+|+||+||||++..|.++ | +.++.-|..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g-~~lv~dD~~ 177 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-G-HRLVADDNV 177 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-T-CEEEESSEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-C-CceecCCeE
Confidence 456999999999999999999886 8 888864444
No 291
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.54 E-value=5.8e-05 Score=57.67 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.++..+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 356789999999999999999998654
No 292
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.53 E-value=4.8e-05 Score=55.86 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+.|.|++||||||+.+.|....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 293
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.53 E-value=0.0016 Score=54.18 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..+.|+|.||+ |+|+.+.|.+.+.
T Consensus 530 ~~r~vvl~GP~---K~tl~~~L~~~~~ 553 (721)
T 2xkx_A 530 YARPIIILGPT---KDRANDDLLSEFP 553 (721)
T ss_pred CCCEEEEECCC---HHHHHHHHHHhCc
Confidence 45778999993 9999999998764
No 294
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.52 E-value=5.4e-05 Score=54.00 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=23.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..+++++|++||||||++..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999888776
No 295
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.52 E-value=5.5e-05 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.+.|+|+|.+||||||++..|...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998775
No 296
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.51 E-value=6e-05 Score=57.82 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.||+||||||+.+.++..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45689999999999999999998654
No 297
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.51 E-value=5.2e-05 Score=56.26 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+.+.|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56789999999999999999997653
No 298
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.50 E-value=6.3e-05 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....++.|.||+||||||+.+.++..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 35678999999999999999999853
No 299
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.50 E-value=5.5e-05 Score=59.93 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..+|+|.|++||||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 46689999999999999999998764
No 300
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.50 E-value=5e-05 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
...|+|.|++|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999975
No 301
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=5.6e-05 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
++...|+|.|++|+||||+.+.|...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35578999999999999999999763
No 302
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.50 E-value=5.2e-05 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|++.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999764
No 303
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.50 E-value=3e-05 Score=57.96 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++.|.|++||||||+.+.|...+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356789999999999999999998755
No 304
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.49 E-value=7.6e-05 Score=50.06 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+.+...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 455678999999999999999999753
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.49 E-value=6.4e-05 Score=55.21 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..+++|.|++||||||++..++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998853
No 306
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.49 E-value=4.8e-05 Score=57.44 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...++|+|++||||||+.+.|...+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999987654
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.49 E-value=5.3e-05 Score=55.41 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..++.|.|++||||||+.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999997543
No 308
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.49 E-value=6.3e-05 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999764
No 309
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.48 E-value=4.3e-05 Score=58.10 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.||+||||||+.+.++..+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45789999999999999999998654
No 310
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.48 E-value=8e-05 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..+++|.|+|||||||++..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998877643
No 311
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.47 E-value=6.7e-05 Score=56.83 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|+|+|||||||+.+.|...+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998653
No 312
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.47 E-value=4.6e-05 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 313
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.47 E-value=6.6e-05 Score=58.47 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+..+|+|+||+||||||+.+.+...+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 345799999999999999999988764
No 314
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.46 E-value=6.2e-05 Score=50.98 Aligned_cols=30 Identities=33% Similarity=0.599 Sum_probs=22.0
Q ss_pred CCCC-CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 1 MSSK-RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 1 m~~~-~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|+.. .....|+|.|.+||||||+.+.|...
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 5442 34667999999999999999999764
No 315
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.46 E-value=9.9e-05 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|++|+||||+...|...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999875
No 316
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.46 E-value=7e-05 Score=56.96 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..+|.|+|+|||||||+.+.|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998753
No 317
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.45 E-value=7.1e-05 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999754
No 318
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.44 E-value=7.9e-05 Score=58.74 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.|++||||||+++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 56789999999999999999998754
No 319
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.44 E-value=0.00011 Score=54.77 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....|+|+|+||||||++|+.+.+..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 35679999999999999999999854
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.43 E-value=0.0001 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+.+|+|++||||||+.+++.--++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3789999999999999999987665
No 321
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.43 E-value=8.5e-05 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..|+|.|++||||||+.+.|...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 322
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.43 E-value=7.4e-05 Score=59.68 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=23.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
....|+|+|++||||||+.+.|...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 356799999999999999999988764
No 323
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.43 E-value=6.2e-05 Score=58.82 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.+|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998654
No 324
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.43 E-value=9.6e-05 Score=51.47 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++..+++++|++||||||.+..++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 325
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.42 E-value=0.00012 Score=61.02 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
....++|+|+|||||||+++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999999986
No 326
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.42 E-value=7e-05 Score=56.23 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC-CceEEeh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD-SLEWIDV 39 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~-~~~~i~~ 39 (172)
...++|.|+|||||||++..++...| .+.|+++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34579999999999999999987533 0456665
No 327
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.42 E-value=8.3e-05 Score=56.64 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..+|+|+|.||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998765
No 328
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.41 E-value=4.4e-05 Score=58.19 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.||+||||||+.+.++..+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46789999999999999999998654
No 329
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.41 E-value=8.6e-05 Score=55.83 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.+|.|+|++|+||||++..|+..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 330
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.40 E-value=0.0001 Score=60.03 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=23.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...++|.|+|||||||+++.+++.+.
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45799999999999999999999774
No 331
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.40 E-value=0.00011 Score=55.36 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...++|+|++|+||||+++.+++.+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHh
Confidence 34599999999999999999999876
No 332
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.40 E-value=8.4e-05 Score=58.18 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---CC-ceEEehhhH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---DS-LEWIDVNKI 42 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~~-~~~i~~d~~ 42 (172)
++.+|+++|++||||||++..|+..+ |. .-++++|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 36789999999999999999998654 30 335665544
No 333
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.39 E-value=8.9e-05 Score=54.23 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|+|||||||+.+.|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999753
No 334
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.39 E-value=9.1e-05 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|++.|.+|+||||+.+.|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999764
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00014 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|++||||||+...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999865
No 336
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.38 E-value=0.00013 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.....|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999864
No 337
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.38 E-value=8.7e-05 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4567999999999999999999854
No 338
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.38 E-value=0.00011 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|++||||||+.+.|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 339
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.38 E-value=0.00014 Score=49.29 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
++...|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999754
No 340
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.37 E-value=0.00011 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.+.|+|+|.+||||||++..|...+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998774
No 341
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.37 E-value=9.8e-05 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 367999999999999999999764
No 342
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.35 E-value=0.00013 Score=49.27 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
++...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 44567999999999999999999754
No 343
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.34 E-value=0.00013 Score=60.86 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.++|+||||||||++|+++++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999986
No 344
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.32 E-value=0.00011 Score=50.97 Aligned_cols=30 Identities=30% Similarity=0.613 Sum_probs=22.1
Q ss_pred CCCC-CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 1 MSSK-RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 1 m~~~-~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|+.. .....|+|.|.+|+||||+.+.|...
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 4442 34567999999999999999999764
No 345
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.32 E-value=0.00011 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 346
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.32 E-value=0.00016 Score=54.29 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=26.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCC-ceEEehh
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDS-LEWIDVN 40 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~-~~~i~~d 40 (172)
..++|+|++|+||||+++.+.++++. +.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 58999999999999999999988751 3455544
No 347
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.32 E-value=0.00015 Score=48.36 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+||||||+.+.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 348
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.32 E-value=0.00011 Score=57.44 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC----CceEEehhh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD----SLEWIDVNK 41 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~----~~~~i~~d~ 41 (172)
+.+|+|+|++||||||++..|+..+. ..-+++.|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 56899999999999999999997641 144566553
No 349
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.30 E-value=0.00015 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
..|+|.|++|+||||+.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 350
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.30 E-value=8.8e-05 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
.+...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3457899999999999999999974
No 351
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.29 E-value=0.00012 Score=55.69 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|.|+|||||||++..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999875
No 352
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.0001 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
....|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999999964
No 353
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.29 E-value=0.00016 Score=55.08 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..++.|.|+|||||||+.+.|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 467999999999999999999754
No 354
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.29 E-value=0.00017 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVV 28 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~ 28 (172)
...|+|.|.+|+||||+.+.|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 4679999999999999999985
No 355
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.29 E-value=0.00017 Score=53.75 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
..++.|.|++||||||+.+.|. .+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 5688999999999999999998 543
No 356
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.28 E-value=0.00018 Score=51.30 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...+|++.|++|+||||++-.++..+
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34569999999999999988887654
No 357
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.28 E-value=0.00011 Score=50.37 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
...|+|.|.+|+||||+.+.|...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45799999999999999999887654
No 358
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.27 E-value=0.00012 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 359
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.27 E-value=0.0002 Score=49.18 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999754
No 360
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.27 E-value=0.00018 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++..++++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998654
No 361
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.27 E-value=0.00014 Score=55.42 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|+|||||||++..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998763
No 362
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.26 E-value=0.00021 Score=48.87 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999754
No 363
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.26 E-value=7.7e-05 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
+...|+|.|++||||||+.+.|..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999864
No 364
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.25 E-value=0.00013 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999863
No 365
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.24 E-value=0.00014 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999754
No 366
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.24 E-value=0.00016 Score=61.16 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..++|+|+||||||++|++|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999987
No 367
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.24 E-value=0.00019 Score=58.10 Aligned_cols=25 Identities=40% Similarity=0.613 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..+++|+|+|||||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988753
No 368
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.24 E-value=0.00018 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|+.|+|.|.|||||||+.+.|...
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999753
No 369
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.24 E-value=0.0002 Score=49.11 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
++...|+|.|.+|+||||+.+.|...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999888754
No 370
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.24 E-value=0.00013 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|++.|.+|+||||+.+.|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 371
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.24 E-value=0.0002 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 372
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.00025 Score=50.69 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
....+++|+|+||+|||++|..++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999987653
No 373
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.23 E-value=0.00017 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3467999999999999999999743
No 374
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.23 E-value=0.00015 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 375
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.23 E-value=0.00014 Score=54.27 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=24.2
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 1 MSSKRTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 1 m~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|+.+.+...|.|.|.||+||||+.+.|...
T Consensus 1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp --CCCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCccCCEEEEECCCCCCHHHHHHHHhCC
Confidence 566566678999999999999999999753
No 376
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.22 E-value=0.00017 Score=55.47 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=22.5
Q ss_pred CCCeEEE--EcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILI--TGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l--~G~~GsGKsT~a~~L~~~l 31 (172)
....++| +|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3457888 9999999999999999876
No 377
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.22 E-value=0.00019 Score=54.41 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..+|.|+|++|+||||+++.|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998653
No 378
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.21 E-value=0.0002 Score=55.42 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVV 28 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~ 28 (172)
...++.|.|+|||||||++..|+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 46789999999999999999775
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.21 E-value=0.00023 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..|+|.|.+|+||||+.+.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999754
No 380
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.21 E-value=0.00015 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 381
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.20 E-value=0.0002 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..|+|.|.+|+||||+.+.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999753
No 382
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.20 E-value=0.00016 Score=50.34 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999754
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.20 E-value=0.00025 Score=47.41 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999854
No 384
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.20 E-value=0.0002 Score=53.19 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..+|.++|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998664
No 385
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.20 E-value=0.00024 Score=54.00 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEehh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDVN 40 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~d 40 (172)
+..++.|.|+|||||||++..++... + .+.|++.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 46789999999999999999988543 2 15566654
No 386
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.20 E-value=0.00021 Score=57.94 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+...+.|.|++||||||+.+.|...+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998765
No 387
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.19 E-value=0.00021 Score=55.75 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=21.0
Q ss_pred CCCe--EEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPN--ILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~--I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+.+ +.|.|++||||||+.+.|...
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3455 999999999999999999754
No 388
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.19 E-value=0.00026 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999764
No 389
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.19 E-value=0.00024 Score=48.89 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+...|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999863
No 390
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.19 E-value=0.00022 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..++.|.|+|||||||+.+.|+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4678999999999999999997543
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.19 E-value=0.00024 Score=47.48 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..|+|.|.+|+||||+.+.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999999753
No 392
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.19 E-value=0.00024 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 393
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.19 E-value=0.0059 Score=47.11 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccccccc-ccCCCCcchhHHHHHHHHHHhcCC-cEEee
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDE-QYECPELDEDKLLDELEPRVQGGG-KIIDY 83 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ii~~ 83 (172)
..+.|+|+||+| +|+.+.|.+.+. -.+.++ .+. +..++ +...+.| .-.+.+.+.+..|. +++|-
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p-~~~~~~---tr~----pR~gE~dG~~Y~F---v~~~~V~~~~~~Gk~~iLdI 296 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEP-DIYQIA---KSE----PRDAGTDQRSSGI---IRLHTIKQIIDQDKHALLDV 296 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCT-TTEEEC---CCC----CCCSSSCCC--CC---CCHHHHHHHHTTTCEEEECC
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCc-cccccc---cCC----CCCcccCCccCCc---CcHHHHHHHHHcCCEEEEEe
Confidence 467799999998 899999998877 334432 111 11111 1112222 13566777777775 45553
Q ss_pred c--ccccCC-cCCcCEEEEEeC-ChHHHHHHHHhc
Q psy6661 84 H--SAEMFP-ERWIDQVYVLSA-DNTTLYDRLVEK 114 (172)
Q Consensus 84 ~--~~~~~~-~~~~~~~i~l~~-~~~~~~~Rl~~r 114 (172)
. ....+. ....-.+|||.+ +.+++.+| ..|
T Consensus 297 d~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r 330 (391)
T 3tsz_A 297 TPNAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMR 330 (391)
T ss_dssp CHHHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHH
T ss_pred CHHHHHHHHhCCCCCEEEEEeCcCHHHHHHH-Hhc
Confidence 2 111111 112235677766 55666654 444
No 394
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.18 E-value=0.00023 Score=47.61 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 395
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.17 E-value=0.0002 Score=58.11 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+...+.|.|++||||||+.+.|...+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3567899999999999999999987653
No 396
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00017 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999754
No 397
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.17 E-value=0.0003 Score=55.10 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+..++.|.|++||||||+.+.++....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3567899999999999999999998764
No 398
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.16 E-value=0.00023 Score=57.21 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456789999999999999999998654
No 399
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.16 E-value=0.00024 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
..++|.|++||||||++..+.+.+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999999998775
No 400
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.15 E-value=0.00012 Score=59.55 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHcCCceEE
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQCDSLEWI 37 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i 37 (172)
..|+|.|+||+|||++|+++++.++ ...+
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~-r~~~ 356 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAP-RAVY 356 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCS-CEEC
T ss_pred cceEEECCCchHHHHHHHHHHHhCC-Ccee
Confidence 3799999999999999999998876 4443
No 401
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.15 E-value=0.00034 Score=53.19 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+..++.|.|++||||||+.+.++....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567899999999999999999998865
No 402
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.15 E-value=0.00027 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
..|+|.|.+|+||||+.+.|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999964
No 403
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.15 E-value=0.00028 Score=56.74 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+.-++.|.|++||||||+.+.|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 404
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.15 E-value=0.00035 Score=52.31 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+..+++|+|+||+||||++..++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999865
No 405
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.14 E-value=0.00021 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3567999999999999999999754
No 406
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=0.00023 Score=48.90 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 407
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.14 E-value=0.00025 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 408
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.13 E-value=0.00021 Score=48.52 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999999753
No 409
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.13 E-value=0.00024 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..++.|.|++||||||+.+.|...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999874
No 410
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.13 E-value=0.00033 Score=53.41 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEeh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDV 39 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~ 39 (172)
+..+++|+|+|||||||+|..++... | .+-|+++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 46789999999999999999988653 2 1556765
No 411
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.13 E-value=0.00033 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.|+|.|.+|+||||+.+.|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999764
No 412
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.13 E-value=0.00025 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.++.|.|++||||||+.+.|+..+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999998764
No 413
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.13 E-value=0.00032 Score=46.77 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999753
No 414
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.12 E-value=0.00032 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.583 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999854
No 415
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+||||||+.+.|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999754
No 416
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.10 E-value=0.00026 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+||||||+.+.|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999754
No 417
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.10 E-value=0.00026 Score=56.38 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---CC-ceEEehhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---DS-LEWIDVNK 41 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~~-~~~i~~d~ 41 (172)
+..+|.|+|++||||||++..|+..+ |. ..+++.|.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 45689999999999999999999654 31 34556543
No 418
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.10 E-value=0.00034 Score=47.07 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999864
No 419
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.09 E-value=0.00028 Score=53.92 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
+++..|+|.|.+||||||+++.+.=.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4577899999999999999999964433
No 420
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.09 E-value=0.00018 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVV 28 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~ 28 (172)
++...|+|.|.+|+||||+.+.|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999999885
No 421
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.09 E-value=0.00028 Score=48.72 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+...|+|.|.+|+||||+.+.|..++.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4577899999999999999998876543
No 422
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.09 E-value=0.00037 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++.|+|+|||||||++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 46789999999999999999998763
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.09 E-value=0.00025 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 424
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.09 E-value=0.0003 Score=49.00 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999999854
No 425
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.09 E-value=0.00028 Score=48.32 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999753
No 426
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.08 E-value=0.00032 Score=48.92 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999753
No 427
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.08 E-value=0.0003 Score=47.91 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
++...|+|.|.+|+||||+.+.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3467799999999999999999964
No 428
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=0.00032 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....++.|+|+|||||||++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999875
No 429
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.08 E-value=0.00032 Score=47.88 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4577999999999999999999653
No 430
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.08 E-value=0.00031 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.611 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999754
No 431
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.08 E-value=0.00023 Score=57.95 Aligned_cols=28 Identities=21% Similarity=0.528 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+...+.|.|++||||||+.+.|...+.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4567899999999999999999987553
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00036 Score=56.86 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 457789999999999999999998654
No 433
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.07 E-value=0.00021 Score=58.05 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+...+.|.|++||||||+.+.|...+.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3567899999999999999999987553
No 434
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.07 E-value=0.00035 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999864
No 435
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.07 E-value=0.00034 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999999999764
No 436
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.07 E-value=0.00038 Score=47.78 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 437
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.06 E-value=0.00048 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
.+...|.|.|+||+||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3467899999999999999999987
No 438
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00034 Score=47.78 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
++...|+|.|.+|+||||+.+.|...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999753
No 439
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.06 E-value=0.00042 Score=46.83 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999754
No 440
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00041 Score=46.86 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999764
No 441
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.05 E-value=0.00011 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..++.|.|+|||||||+.+.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4578999999999999999999643
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.04 E-value=0.00032 Score=56.38 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..++.|.|++||||||+++.|+..+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998654
No 443
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.04 E-value=0.00026 Score=52.66 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEehh
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDVN 40 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~d 40 (172)
+.+|+++|++|+||||++..|+..+ | ...+++.|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5689999999999999999998665 3 13455554
No 444
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.00027 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567999999999999999999764
No 445
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.03 E-value=0.00018 Score=58.35 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+...+.|.||+||||||+.+.|...+.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3567899999999999999999986553
No 446
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.02 E-value=0.00044 Score=47.44 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 567999999999999999999875
No 447
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.02 E-value=0.00048 Score=54.17 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+..+++|+|+||+||||++..++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998765
No 448
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.02 E-value=0.00031 Score=48.12 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3567999999999999999999753
No 449
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.02 E-value=0.00036 Score=54.56 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc----CC-ceEEehhh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC----DS-LEWIDVNK 41 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l----~~-~~~i~~d~ 41 (172)
++.+|+++|++||||||++..|+..+ |. .-++++|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45689999999999999999998554 30 33556654
No 450
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.02 E-value=0.00046 Score=45.97 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 8 PNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+.+|+|+.||||||+..++.=-+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999996443
No 451
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.01 E-value=0.00011 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=21.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 4 KRTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
......|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhc
Confidence 34456799999999999999999863
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.01 E-value=0.00017 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=10.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
...|+|.|.+|+||||+.+.|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 56799999999999999999974
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.01 E-value=0.00038 Score=48.00 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
++...|+|.|.+|+||||+.+.|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999953
No 454
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.00 E-value=0.00061 Score=48.16 Aligned_cols=27 Identities=22% Similarity=0.102 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++..+.+++|++||||||.+..++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346788999999999999999888775
No 455
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.00 E-value=0.00039 Score=54.25 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
++.+|.++|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999765
No 456
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.00 E-value=0.00048 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999764
No 457
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.99 E-value=0.00033 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
+...|+|.|.+|+||||+.+.|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999953
No 458
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.99 E-value=0.00029 Score=47.94 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999753
No 459
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.99 E-value=0.006 Score=48.10 Aligned_cols=90 Identities=9% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHcCCceEEehhhHHhhccccccccc-ccCCCCcchhHHHHHHHHHHhcCC-cEEee
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQCDSLEWIDVNKIARENQFYLKYDE-QYECPELDEDKLLDELEPRVQGGG-KIIDY 83 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~~i~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ii~~ 83 (172)
..+.|+|.||+|+| +.+.|.+.+. -.+...- -+ . ..++ +...+.| ...+.+.+.+..|. +|++-
T Consensus 223 ~~r~iVlsGPsG~G---l~~~Ll~~~p-~~f~s~~--TR-p----R~gE~dG~~Y~F---Ts~~~V~~vl~~Gk~~iLdI 288 (468)
T 3shw_A 223 FLRPVTIFGPIADV---AREKLAREEP-DIYQIAK--SE-P----RDAGTDQRSSGI---IRLHTIKQIIDQDKHALLDV 288 (468)
T ss_dssp SCCCEEEESTTHHH---HHHHHHHHCT-TTEEECC--CB-C--------------CB---CCHHHHHHHHTTTCEEEECC
T ss_pred CCCEEEEECCCHHH---HHHHHHHhCC-Cceeeec--CC-C----CCcccccccCCc---ccHHHHHHHHHCCCeEEEEe
Confidence 46779999999999 8888888876 3333321 11 1 1111 1112222 34566677777775 45543
Q ss_pred c--ccccCC-cCCcCEEEEEeC-ChHHHHH
Q psy6661 84 H--SAEMFP-ERWIDQVYVLSA-DNTTLYD 109 (172)
Q Consensus 84 ~--~~~~~~-~~~~~~~i~l~~-~~~~~~~ 109 (172)
. ....+. ....-.+|||.. +.+++.+
T Consensus 289 d~qg~~~l~~~~~~p~~IFI~PPS~e~L~~ 318 (468)
T 3shw_A 289 TPNAVDRLNYAQWYPIVVFLNPDSKQGVKT 318 (468)
T ss_dssp CHHHHHHHHHTTCCCEEEEEECSCHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEEEeCcCHHHHHH
Confidence 2 111111 122236677777 5555554
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.98 E-value=0.00048 Score=55.37 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.-++.|.|++||||||+.+.|+..+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998654
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.98 E-value=0.00044 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEV 27 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (172)
+..++.|.|++||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999999994
No 462
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.97 E-value=0.00038 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
+...|+|.|.+|+||||+.+.|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999974
No 463
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.96 E-value=0.00037 Score=47.92 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
.....|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999999964
No 464
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.96 E-value=0.00026 Score=57.49 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
.+...+.|.|++||||||+.+.|...+.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3567899999999999999999987653
No 465
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.96 E-value=0.00045 Score=54.35 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=21.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
|+.+.|+|.|.||+||||+.+.|...
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45688999999999999999999643
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.96 E-value=0.00054 Score=47.00 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.96 E-value=0.00043 Score=56.43 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.+..++.|.|++||||||+.+.|+..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 356789999999999999999998654
No 468
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.96 E-value=0.00034 Score=57.04 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
..+.|.|.|++||||||+.+.|+..
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCC
Confidence 3567999999999999999999864
No 469
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.96 E-value=0.00056 Score=46.88 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3457999999999999999999754
No 470
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.96 E-value=0.00042 Score=51.92 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...++.|+|+|||||||++..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 471
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.95 E-value=0.00036 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 472
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.95 E-value=0.00046 Score=48.89 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
+...|+|.|.+|+||||+.+.|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999964
No 473
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.95 E-value=0.00048 Score=56.16 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
...++|+|+|||||||++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988766443
No 474
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.95 E-value=0.00048 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999753
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.94 E-value=0.00057 Score=46.73 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999764
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.94 E-value=0.00054 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+.-++.|.|++||||||+.+.|+..+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998654
No 477
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.93 E-value=0.00053 Score=47.70 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+...|...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999753
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0006 Score=55.57 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
.-++.|.|++||||||+.+.|+..+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Confidence 3578999999999999999998654
No 479
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.91 E-value=0.00065 Score=52.03 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+..|.|.|.||+||||+.+.|...
T Consensus 1 ~~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 1 MLAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CCSEEEECCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999875
No 480
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.90 E-value=0.00053 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|.|.|.|||||||+.+.|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999853
No 481
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.90 E-value=6.5e-05 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQCD 32 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~l~ 32 (172)
++.|.||+||||||+.++++-.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 356889999999999999987653
No 482
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.00041 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+.++|+||+|+||||++++|++.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999986
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.88 E-value=0.00041 Score=47.51 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|+|.|.+|+||||+.+.|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4668999999999999999999654
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.88 E-value=0.00061 Score=54.56 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC 31 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l 31 (172)
+..+++|.|++||||||+++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998653
No 485
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.88 E-value=0.00058 Score=47.13 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
+...|+|.|.+|+||||+.+.|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999974
No 486
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.88 E-value=0.00046 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHHH
Q psy6661 8 PNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 8 ~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
..|+|.|++|+||||+.+.|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4579999999999999999864
No 487
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00066 Score=47.24 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
...|+|.|.+|+||||+.+.|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 488
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.87 E-value=0.00046 Score=58.15 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=17.5
Q ss_pred CCCeEEEEcCCCCCHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLC 24 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (172)
+.++++|||+||||||||+
T Consensus 35 ~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 35 RDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp SSSEEEEESSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999998
No 489
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.87 E-value=0.00064 Score=47.74 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 4567999999999999999999764
No 490
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.86 E-value=0.00082 Score=52.66 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.+..+++|+|+||+||||++..++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988865
No 491
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.86 E-value=0.00064 Score=46.75 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
...|+|.|.+|+||||+.+.|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999964
No 492
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.86 E-value=0.00044 Score=50.26 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
+...|+|.|.|||||||+.+.|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 346799999999999999999975
No 493
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.86 E-value=0.00051 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
...|+|.|.+|+|||||.+.|..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999853
No 494
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.85 E-value=0.00065 Score=47.06 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Q psy6661 7 KPNILITGTPGTGKSTLCEEVVK 29 (172)
Q Consensus 7 ~~~I~l~G~~GsGKsT~a~~L~~ 29 (172)
...|+|.|.+|+||||+.+.|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46799999999999999999974
No 495
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.85 E-value=0.0004 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHH
Q psy6661 5 RTKPNILITGTPGTGKSTLCEEVV 28 (172)
Q Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~L~ 28 (172)
++...|++.|.+|+||||+.+.|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999984
No 496
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.84 E-value=0.00077 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....++|.|++||||||+++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998865
No 497
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.84 E-value=0.0008 Score=51.48 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHc---C-CceEEehh
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQC---D-SLEWIDVN 40 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~l---~-~~~~i~~d 40 (172)
...++.|.|+|||||||+|..++... + .+.|++++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46789999999999999999887653 2 15566654
No 498
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.84 E-value=0.00065 Score=50.50 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
+...|.|.|+||+||||+.+.|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457999999999999999999753
No 499
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.84 E-value=0.00059 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHH
Q psy6661 9 NILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 9 ~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
.|+|.|++||||||+.+.|...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3799999999999999999753
No 500
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.83 E-value=0.00055 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Q psy6661 6 TKPNILITGTPGTGKSTLCEEVVKQ 30 (172)
Q Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L~~~ 30 (172)
....|+|.|.+|+||||+.+.|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4567999999999999999999754
Done!